Pregenerated sensors for DEFA29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074437Ensembl transcript IDs: ENSMUST00000098890.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTaGGGACCAAAAGCAAATGGTCATCTCAACCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: KELQLRLSTMGS*GPKANGHLNPD Trigger: ATCTGGGTTGAGATGACCATTTGCTTTTGGTCCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR CCA 90 bp | AGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGACCAAAAGCCACACTTGGCACTTCTaGCACACTCGGCACTTCCGG | + |
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Preference number: 4 (lower is better) Translates to: REGIAIEAKHNGIVRTKSHTWHF*HTRHFR Trigger: CCGGAAGTGCCGAGTGTGCCAGAAGTGCCAAGTGTG...GCTTTTGGTCCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR CCA 90 bp | GAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: EFMREGIAIEAKHNGIVRWIGSA*TWKASR Trigger: TCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCA...CCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGACCAAACACTTCTGGCACACTTaGCACTTCTGGCACACTCGG | + |
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Preference number: 4 (lower is better) Translates to: MREGIAIEAKHNGIVRTKHFWHT*HFWHTR Trigger: CCGAGTGTGCCAGAAGTGCCAAGTGTGCCAGAAGTG...TTTGGTCCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR GCA 90 bp | GGGATCGTGAGGACCAAAAGCAAATGGTCATCTCAACCCAGATTCCACATTCAGTCCTCTTCCTCTGGCTaGTCCTCAGTTTTAGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GIVRTKSKWSSQPRFHIQSSSSG*SSVLVS Trigger: AGAGACTAAAACTGAGGAGCAGCCAGAGGAAGAGGA...CTGAATGTGGAATCTGGGTTGAGATGACCATTTGCTTTTGGTCCTCACGATCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR GCA 90 bp | GAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGGAGCAGAGCCTTCTGTaGCTCCAAAGGAGACAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: EFMREGIAIEAKHNGIVREQSLL*LQRRQK Trigger: TTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTC...CCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR TCA 90 bp | GAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGTTGGAGCTTGGGTGGTaGTTGCAGTTTTATTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: EFMREGIAIEAKHNGIVRLELGW*LQFYFA Trigger: GGCAAAATAAAACTGCAATCACCACCCAAGCTCCAA...CCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR GCA 90 bp | ATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGACCAAAAGCTTGGGTGGTGATTaGAGTTTTATTTTGCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: MREGIAIEAKHNGIVRTKSLGGD*SFILPF Trigger: GAAAGGCAAAATAAAACTGCAATCACCACCCAAGCT...TTTGGTCCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCATTGCAGTTTTATTTTaGCTTTCTTCGCACAATGGC | + |
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Preference number: 4 (lower is better) Translates to: SKEFMREGIAIEAKHNGIIAVLF*LSSHNG Trigger: GCCATTGTGCGAAGAAAGGCAAAATAAAACTGCAAT...GATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTCCTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR CAA 90 bp | AGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGAGGACCAAAAGCGCACTTCTGGCACACTaGGCACTTCTGGCACACTCG | + |
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Preference number: 5 (lower is better) Translates to: REGIAIEAKHNGIVRTKSALLAH*ALLAHS Trigger: CGAGTGTGCCAGAAGTGCCAAGTGTGCCAGAAGTGC...GCTTTTGGTCCTCACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS GCA 90 bp | GTGCCTCCAAAGGAGACAGAAACAGCCTGGTCCTCTTCCTCTGGCTaGTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTGGATAGGATCA | + |
|
Preference number: 5 (lower is better) Translates to: VPPKETETAWSSSSG*SSVLVSSSVFWIGS Trigger: TGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGAGGAAGAGGACCAGGCTGTTTCTGTCTCCTTTGGAGGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS-3UTR CAA 90 bp | AAGGAGTTTATGAGAGAAGGAATTGCAATTGAGGCTAAGCACAATGGGATCGTGCCACGGAAACCTTCTTaGGGCTACATCTTGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: KEFMREGIAIEAKHNGIVPRKPS*GYILKS Trigger: GCTCTTCAAGATGTAGCCCAAAGAAGGTTTCCGTGG...CACGATCCCATTGTGCTTAGCCTCAATTGCAATTCCTTCTCTCATAAACTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CCA 72 bp | GGGCACTGGGGGCATGTCGGGCACACAGGGCACTTCTaGCACACTTGGCACTTCTGGCACACTCGGCACTTC | + |
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Preference number: 6 (lower is better) Translates to: GHWGHVGHTGHF*HTWHFWHTRHF Trigger: GAAGTGCCGAGTGTGCCAGAAGTGCCAAGTGTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CCA 72 bp | TTTTGCCTTTCTTCGCACAATGGCTGCTTTGGGCACTaGGGGCATGTCGGGCACACAGGGCACTTCTGGCAC | + |
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Preference number: 6 (lower is better) Translates to: FCLSSHNGCFGH*GHVGHTGHFWH Trigger: GTGCCAGAAGTGCCCTGTGTGCCCGACATGCCCCCAGTGCCCAAAGCAGCCATTGTGCGAAGAAAGGCAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CAA 90 bp | CACTCGGCACTTCCGGCACCACGGAAACCTTCTTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGACAGAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: HSALPAPRKPSLGYI*KSRAFCASKGDRNS Trigger: GCTGTTTCTGTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAGTGCCGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CAA 72 bp | CTTCCGGCACCACGGAAACCTTCTTTGGGCTACATCTaGAAGAGCAGAGCCTTCTGTGCCTCCAAAGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: LPAPRKPSLGYI*KSRAFCASKGD Trigger: GTCTCCTTTGGAGGCACAGAAGGCTCTGCTCTTCAAGATGTAGCCCAAAGAAGGTTTCCGTGGTGCCGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CAA 90 bp | CTCTTCCTCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGAACGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: LFLWLLLSFSLFICV*DRISLDLEGQQNEG Trigger: GCCCTCGTTCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGAGGAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CCA 72 bp | GGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GCSSVLVSSSVF*IGSAWTWKASR Trigger: TCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS GCA 72 bp | AAGGAGACAGAAACAGCCTGGTCCTCTTCCTCTGGCTaGTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: KETETAWSSSSG*SSVLVSSSVFW Trigger: CCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGAGGAAGAGGACCAGGCTGTTTCTGTCTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS CAA 90 bp | TTTATGCTGTGTATTTGGAGCTTGGGTGGTGATTGCAGTTTTATTTaGCCTTTCTTCGCACAATGGCTGCTTTGGGCACTGGGGGCATGT | + |
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Preference number: 6 (lower is better) Translates to: FMLCIWSLGGDCSFI*PFFAQWLLWALGAC Trigger: ACATGCCCCCAGTGCCCAAAGCAGCCATTGTGCGAAGAAAGGCAAAATAAAACTGCAATCACCACCCAAGCTCCAAATACACAGCATAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS GCA 72 bp | GTATTTGGAGCTTGGGTGGTGATTGCAGTTTTATTTTaGCTTTCTTCGCACAATGGCTGCTTTGGGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: VFGAWVVIAVLF*LSSHNGCFGHW Trigger: CCAGTGCCCAAAGCAGCCATTGTGCGAAGAAAGGCAAAATAAAACTGCAATCACCACCCAAGCTCCAAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS GCA 72 bp | GCCTTTATGCTGTGTATTTGGAGCTTGGGTGGTGATTaGAGTTTTATTTTGCCTTTCTTCGCACAATGGCTG | + |
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Preference number: 6 (lower is better) Translates to: AFMLCIWSLGGD*SFILPFFAQWL Trigger: CAGCCATTGTGCGAAGAAAGGCAAAATAAAACTGCAATCACCACCCAAGCTCCAAATACACAGCATAAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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| CDS TCA 72 bp | AACAGCCTTTATGCTGTGTATTTGGAGCTTGGGTGGTaGTTGCAGTTTTATTTTGCCTTTCTTCGCACAATG | + |
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Preference number: 6 (lower is better) Translates to: NSLYAVYLELGW*LQFYFAFLRTM Trigger: CATTGTGCGAAGAAAGGCAAAATAAAACTGCAATCACCACCCAAGCTCCAAATACACAGCATAAAGGCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098890.4 |
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