RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DEFA27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000082211

Ensembl transcript IDs: ENSMUST00000167683.3, ENSMUST00000168340.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TATTGTGAACAATTTATTGAGAAATGTTCATCAGGCCCCAGCATCAGTGGCCTCGATCTTCATTCCTCTTaGAGAGAAGAGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: YCEQFIEKCSSGPSISGLDLHSS*REEPSG
Trigger: CCCAGAAGGCTCTTCTCTTCAAGAGGAATGAAGATC...GAGGCCACTGATGCTGGGGCCTGATGAACATTTCTCAATAAATTGTTCACAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS-3UTR GCA 90 bp TGTGAACAATTTATTGAGAAATGTTCATCAGGCCCCAGCATCAGTGGCCTCAGTGGCGTTCTCTTCTTTTaGAGCCTCTTGTTCTACAAT +
Preference number: 4 (lower is better)
Translates to: CEQFIEKCSSGPSISGLSGVLFF*SLLFYN
Trigger: ATTGTAGAACAAGAGGCTGCAAAAGAAGAGAACGCC...ACTGAGGCCACTGATGCTGGGGCCTGATGAACATTTCTCAATAAATTGTTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS-3UTR CCA 90 bp TGTGAACAATTTATTGAGAAATGTTCATCAGGCCCCAGCATCAGTGGCCTCAGTTTGGTCTTCTTTCCCTaGCTGCTCATCAATTTTACT +
Preference number: 4 (lower is better)
Translates to: CEQFIEKCSSGPSISGLSLVFFP*LLINFT
Trigger: AGTAAAATTGATGAGCAGCCAGGGAAAGAAGACCAA...ACTGAGGCCACTGATGCTGGGGCCTGATGAACATTTCTCAATAAATTGTTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS CCA 90 bp TCATCAATTTTACTCTCTTCATCTCTGTTTTGGATAGGATCAGCCTaGACTTGGGAGGCCAGCAGGGCAAGGGCAGAGAGGAGGACTAGT +
Preference number: 5 (lower is better)
Translates to: SSILLSSSLFWIGSA*TWEASRARAERRTS
Trigger: ACTAGTCCTCCTCTCTGCCCTTGCCCTGCTGGCCTCCCAAGTCCAGGCTGATCCTATCCAAAACAGAGATGAAGAGAGTAAAATTGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CCA 90 bp GCATATCAGATCTCTCAACGATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTCTTTCCCTGG +
Preference number: 5 (lower is better)
Translates to: AYQISQRFLLKRRAF*VSKGDRNSLVFFPW
Trigger: CCAGGGAAAGAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGATATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS-3UTR CAA 90 bp AACAATTTATTGAGAAATGTTCATCAGGCCCCAGCATCAGTGGCCTCAGTACTCAGATCTTCATTCCTCTaGAAGAGAAGAGCCTTCTGG +
Preference number: 5 (lower is better)
Translates to: NNLLRNVHQAPASVASVLRSSFL*KRRAFW
Trigger: CCAGAAGGCTCTTCTCTTCAAGAGGAATGAAGATCT...GAGTACTGAGGCCACTGATGCTGGGGCCTGATGAACATTTCTCAATAAATTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS GCA 90 bp TTAAATGACCCTTTCTGCAGGTCCCATTCAGGCGTTCTCTTCTTTTaGAGCCTCTTGTTCTACAATAGCATATCAGATCTTCATTCCTCT +
Preference number: 5 (lower is better)
Translates to: LNDPFCRSHSGVLFF*SLLFYNSISDLHSS
Trigger: AGAGGAATGAAGATCTGATATGCTATTGTAGAACAAGAGGCTGCAAAAGAAGAGAACGCCTGAATGGGACCTGCAGAAAGGGTCATTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS GCA 90 bp TTAAATGACCCTTTCTGCAGGTCCCATTCAGGCGTTCTCTTCTTTTaGAGCCTCTTGTTCTACAATAGCATATCAGATCTCTCAACGATT +
Preference number: 5 (lower is better)
Translates to: LNDPFCRSHSGVLFF*SLLFYNSISDLSTI
Trigger: AATCGTTGAGAGATCTGATATGCTATTGTAGAACAAGAGGCTGCAAAAGAAGAGAACGCCTGAATGGGACCTGCAGAAAGGGTCATTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CCA 72 bp TTACTCTCTTCATCTCTGTTTTGGATAGGATCAGCCTaGACTTGGGAGGCCAGCAGGGCAAGGGCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: LLSSSLFWIGSA*TWEASRARAER
Trigger: CCTCTCTGCCCTTGCCCTGCTGGCCTCCCAAGTCCAGGCTGATCCTATCCAAAACAGAGATGAAGAGAGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CAA 90 bp TTCTTTCCCTGGCTGCTCATCAATTTTACTCTCTTCATCTCTGTTTaGGATAGGATCAGCCTGGACTTGGGAGGCCAGCAGGGCAAGGGC +
Preference number: 6 (lower is better)
Translates to: FFPWLLINFTLFISV*DRISLDLGGQQGKG
Trigger: GCCCTTGCCCTGCTGGCCTCCCAAGTCCAGGCTGATCCTATCCAAAACAGAGATGAAGAGAGTAAAATTGATGAGCAGCCAGGGAAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CAA 72 bp TGGCTGCTCATCAATTTTACTCTCTTCATCTCTGTTTaGGATAGGATCAGCCTGGACTTGGGAGGCCAGCAG +
Preference number: 6 (lower is better)
Translates to: WLLINFTLFISV*DRISLDLGGQQ
Trigger: CTGCTGGCCTCCCAAGTCCAGGCTGATCCTATCCAAAACAGAGATGAAGAGAGTAAAATTGATGAGCAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CCA 72 bp ATCTCTCAACGATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTC +
Preference number: 6 (lower is better)
Translates to: ISQRFLLKRRAF*VSKGDRNSLVF
Trigger: GAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS CAA 72 bp AGAGCCTTCTGGGTCTCCAAAGGAGACAGAAACAGCTaGGTCTTCTTTCCCTGGCTGCTCATCAATTTTACT +
Preference number: 6 (lower is better)
Translates to: RAFWVSKGDRNS*VFFPWLLINFT
Trigger: AGTAAAATTGATGAGCAGCCAGGGAAAGAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167683.3
ENSMUST00000168340.2
CDS CCA 72 bp ATCAGATCTTCATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTC +
Preference number: 6 (lower is better)
Translates to: IRSSFLLKRRAF*VSKGDRNSLVF
Trigger: GAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATGAAGATCTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168340.2
CDS CAA 72 bp TCTACAATAGCATATCAGATCTCTCAACGATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAGGAGAC +
Preference number: 6 (lower is better)
Translates to: STIAYQISQRFL*KRRAFWVSKGD
Trigger: GTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGATATGCTATTGTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3
CDS GCA 72 bp AAGGAGACAGAAACAGCTTGGTCTTCTTTCCCTGGCTaGTCATCAATTTTACTCTCTTCATCTCTGTTTTGG +
Preference number: 6 (lower is better)
Translates to: KETETAWSSFPG*SSILLSSSLFW
Trigger: CCAAAACAGAGATGAAGAGAGTAAAATTGATGAGCAGCCAGGGAAAGAAGACCAAGCTGTTTCTGTCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000167683.3