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Pregenerated sensors for DEFA26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060070

Ensembl transcript IDs: ENSMUST00000074343.6

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GCCCCAGCATCAGTGGCCTCAGTGTTCATGGAAGTCTTGTCCTCTGGGGTCTCCGAGACAGACACAGCCTaGTCCTCTTCCTGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: APASVASVFMEVLSSGVSETDTA*SSSCGC
Trigger: GCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTC...GGAGACCCCAGAGGACAAGACTTCCATGAACACTGAGGCCACTGATGCTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS-3UTR TCA 90 bp GTGGACATCAGGCCCCAGCATCAGTGGCCTCAGTGTTCATGGAAGTCTTGTCCTCTCAACGATTCTTCTTaGAGATCAGAGCCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: VDIRPQHQWPQCSWKSCPLNDSS*RSEPSG
Trigger: TCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAG...AGGACAAGACTTCCATGAACACTGAGGCCACTGATGCTGGGGCCTGATGTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 90 bp TCTTCCTGTGGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGAAAAGGGCA +
Preference number: 5 (lower is better)
Translates to: SSCGCTSVLVSSSVF*IGSAWTWKASRKRA
Trigger: TGCCCTTTTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 90 bp GTATTAGTCTCTTCATCTGTGTTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGAAAAGGGCAGAGAGGAGGACAAGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: VLVSSSVFWIGSAWT*KASRKRAERRTSVF
Trigger: GAAGACACTTGTCCTCCTCTCTGCCCTTTTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 90 bp GCATCCCAGATCTCTCAACGATTCTTCTTGAAGATCAGAGCCTTCTaGATTTCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: ASQISQRFFLKIRAF*ISKGDRHSLVLFLW
Trigger: CCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGAAATCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAGAGATCTGGGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS GCA 90 bp GGATTTCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCTGTGGCTaGACCTCAGTATTAGTCTCTTCATCTGTGTTTTGGATAGGATCA +
Preference number: 5 (lower is better)
Translates to: GFPKETDTAWSSSCG*TSVLVSSSVFWIGS
Trigger: TGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGAAATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 90 bp TTCTGGATTTCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCTGTaGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTTTTGGATAGG +
Preference number: 5 (lower is better)
Translates to: FWISKGDRHSLVLFL*LHLSISLFICVLDR
Trigger: CCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGAAATCCAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 72 bp GGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: GCTSVLVSSSVF*IGSAWTWKASR
Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CAA 90 bp CTCTTCCTGTGGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGAAAAGGGC +
Preference number: 6 (lower is better)
Translates to: LFLWLHLSISLFICV*DRISLDLEGQQEKG
Trigger: GCCCTTTTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 72 bp TTAGTCTCTTCATCTGTGTTTTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGGAAAAGGGCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: LVSSSVFWIGSA*TWKASRKRAER
Trigger: CCTCTCTGCCCTTTTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CAA 72 bp TGGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAG +
Preference number: 6 (lower is better)
Translates to: WLHLSISLFICV*DRISLDLEGQQ
Trigger: CTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS GCA 72 bp AAGGAGACAGACACAGCCTGGTCCTCTTCCTGTGGCTaGACCTCAGTATTAGTCTCTTCATCTGTGTTTTGG +
Preference number: 6 (lower is better)
Translates to: KETDTAWSSSCG*TSVLVSSSVFW
Trigger: CCAAAACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 72 bp TCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCTGTaGCTGCACCTCAGTATTAGTCTCTTCATCTGTGTT +
Preference number: 6 (lower is better)
Translates to: SKGDRHSLVLFL*LHLSISLFICV
Trigger: AACACAGATGAAGAGACTAATACTGAGGTGCAGCCACAGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CCA 72 bp ATCTCTCAACGATTCTTCTTGAAGATCAGAGCCTTCTaGATTTCCAAAGGAGACAGACACAGCCTGGTCCTC +
Preference number: 6 (lower is better)
Translates to: ISQRFFLKIRAF*ISKGDRHSLVL
Trigger: GAGGACCAGGCTGTGTCTGTCTCCTTTGGAAATCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6
CDS CAA 72 bp TCTACAATAGCATCCCAGATCTCTCAACGATTCTTCTaGAAGATCAGAGCCTTCTGGATTTCCAAAGGAGAC +
Preference number: 6 (lower is better)
Translates to: STIASQISQRFF*KIRAFWISKGD
Trigger: GTCTCCTTTGGAAATCCAGAAGGCTCTGATCTTCAAGAAGAATCGTTGAGAGATCTGGGATGCTATTGTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074343.6