Pregenerated sensors for DEFA25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094687Ensembl transcript IDs: ENSMUST00000095425.2
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | ATAGCATATCAGATCTTCACATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTCTTTCCCTGG | + |
Preference number: 5 (lower is better) Translates to: IAYQIFTFLLKRRAF*VSKGDRNSLVFFPW Trigger: CCAGGGAAAGAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATGTGAAGATCTGATATGCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095425.2 |
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CDS CCA 90 bp | TTCTGGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTCTTTCCCTaGCTGCTCATCAATTTTACTCTCTTCATCTCTGTTTTGGATAGG | + |
Preference number: 5 (lower is better) Translates to: FWVSKGDRNSLVFFP*LLINFTLFISVLDR Trigger: CCTATCCAAAACAGAGATGAAGAGAGTAAAATTGATGAGCAGCCAGGGAAAGAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095425.2 |
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CDS GCA 90 bp | TTAAATGACCCTTTCTGCAGGTCCCATTCAGGCGTTCTCTTCTTTTaGAGCCTCTTGTTCTACAATAGCATATCAGATCTTCACATTCCT | + |
Preference number: 5 (lower is better) Translates to: LNDPFCRSHSGVLFF*SLLFYNSISDLHIP Trigger: AGGAATGTGAAGATCTGATATGCTATTGTAGAACAAGAGGCTGCAAAAGAAGAGAACGCCTGAATGGGACCTGCAGAAAGGGTCATTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095425.2 |
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CDS CCA 72 bp | CAGATCTTCACATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAGGAGACAGAAACAGCTTGGTCTTC | + |
Preference number: 6 (lower is better) Translates to: QIFTFLLKRRAF*VSKGDRNSLVF Trigger: GAAGACCAAGCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATGTGAAGATCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095425.2 |
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CDS CAA 90 bp | GCAGCCTCTTGTTCTACAATAGCATATCAGATCTTCACATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAGGAGACAGAAACAGC | + |
Preference number: 6 (lower is better) Translates to: AASCSTIAYQIFTFL*KRRAFWVSKGDRNS Trigger: GCTGTTTCTGTCTCCTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATGTGAAGATCTGATATGCTATTGTAGAACAAGAGGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095425.2 |