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Pregenerated sensors for DEFA24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064213

Ensembl transcript IDs: ENSMUST00000080533.6

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTCTCAATGATTCCTCTTaGAGAGAAGCGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: QHQWPQYSWSSCPLWSPCLNDSS*REAPSG
Trigger: CCCAGAAGGCGCTTCTCTTCAAGAGGAATCATTGAG...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS-3UTR CCA 90 bp CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTAAGAGAAGCGCCTTCTaGGTCTCCAAAAGAGACAGA +
Preference number: 4 (lower is better)
Translates to: QHQWPQYSWSSCPLWSPCKRSAF*VSKRDR
Trigger: TCTGTCTCTTTTGGAGACCCAGAAGGCGCTTCTCTT...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS-3UTR TCA 90 bp CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTAGCATGTACAATAAATaGCCCTTACTGCAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: QHQWPQYSWSSCPLWSPCSMYNK*PLLQVP
Trigger: TGGGACCTGCAGTAAGGGTCATTTATTGTACATGCT...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS-3UTR TCA 90 bp CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTTACCAGATCTCTCAATaGTTCCTCTTGAAGAGAAGC +
Preference number: 4 (lower is better)
Translates to: QHQWPQYSWSSCPLWSPCYQISQ*FLLKRS
Trigger: GCTTCTCTTCAAGAGGAATCATTGAGAGATCTGGTA...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS CCA 90 bp GTTTTAGTCTCTTCATCTGTATTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGACGAGGGCAGAGAGGAGGATTAGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: VLVSSSVFWIGSAWT*KASRTRAERRISVF
Trigger: GAAGACACTAATCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS GCA 90 bp AGCAGAGCATGTACAATAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAATAGCATACCA +
Preference number: 5 (lower is better)
Translates to: SRACTINDPYCRSHS*VLFLCSLLLYNSIP
Trigger: TGGTATGCTATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTATTGTACATGCTCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS CCA 72 bp TTAGTCTCTTCATCTGTATTTTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGGACGAGGGCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: LVSSSVFWIGSA*TWKASRTRAER
Trigger: CCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS CCA 72 bp GGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTATTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: GCSSVLVSSSVF*IGSAWTWKASR
Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAACTGAGGAGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS CAA 72 bp TGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTATTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAG +
Preference number: 6 (lower is better)
Translates to: WLLLSFSLFICI*DRISLDLEGQQ
Trigger: CTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAACTGAGGAGCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS TCA 72 bp GCCTCTTGCTCTACAATAGCATACCAGATCTCTCAATaGTTCCTCTTGAAGAGAAGCGCCTTCTGGGTCTCC +
Preference number: 6 (lower is better)
Translates to: ASCSTIAYQISQ*FLLKRSAFWVS
Trigger: GGAGACCCAGAAGGCGCTTCTCTTCAAGAGGAATCATTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6
CDS GCA 72 bp TGTACAATAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAAT +
Preference number: 6 (lower is better)
Translates to: CTINDPYCRSHS*VLFLCSLLLYN
Trigger: ATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTATTGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080533.6