Pregenerated sensors for DEFA24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064213Ensembl transcript IDs: ENSMUST00000080533.6
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR TCA 90 bp | CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTCTCAATGATTCCTCTTaGAGAGAAGCGCCTTCTGGG | + |
Preference number: 4 (lower is better) Translates to: QHQWPQYSWSSCPLWSPCLNDSS*REAPSG Trigger: CCCAGAAGGCGCTTCTCTTCAAGAGGAATCATTGAG...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS-3UTR CCA 90 bp | CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTAAGAGAAGCGCCTTCTaGGTCTCCAAAAGAGACAGA | + |
Preference number: 4 (lower is better) Translates to: QHQWPQYSWSSCPLWSPCKRSAF*VSKRDR Trigger: TCTGTCTCTTTTGGAGACCCAGAAGGCGCTTCTCTT...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS-3UTR TCA 90 bp | CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTAGCATGTACAATAAATaGCCCTTACTGCAGGTCCCA | + |
Preference number: 4 (lower is better) Translates to: QHQWPQYSWSSCPLWSPCSMYNK*PLLQVP Trigger: TGGGACCTGCAGTAAGGGTCATTTATTGTACATGCT...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS-3UTR TCA 90 bp | CAGCATCAGTGGCCTCAGTACTCATGGTCATCTTGTCCTCTGTGGTCTCCATGTTACCAGATCTCTCAATaGTTCCTCTTGAAGAGAAGC | + |
Preference number: 4 (lower is better) Translates to: QHQWPQYSWSSCPLWSPCYQISQ*FLLKRS Trigger: GCTTCTCTTCAAGAGGAATCATTGAGAGATCTGGTA...ACATGGAGACCACAGAGGACAAGATGACCATGAGTACTGAGGCCACTGATGCTG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS CCA 90 bp | GTTTTAGTCTCTTCATCTGTATTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGACGAGGGCAGAGAGGAGGATTAGTGTCTTC | + |
Preference number: 5 (lower is better) Translates to: VLVSSSVFWIGSAWT*KASRTRAERRISVF Trigger: GAAGACACTAATCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS GCA 90 bp | AGCAGAGCATGTACAATAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAATAGCATACCA | + |
Preference number: 5 (lower is better) Translates to: SRACTINDPYCRSHS*VLFLCSLLLYNSIP Trigger: TGGTATGCTATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTATTGTACATGCTCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS CCA 72 bp | TTAGTCTCTTCATCTGTATTTTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGGACGAGGGCAGAGAGG | + |
Preference number: 6 (lower is better) Translates to: LVSSSVFWIGSA*TWKASRTRAER Trigger: CCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS CCA 72 bp | GGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTATTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGG | + |
Preference number: 6 (lower is better) Translates to: GCSSVLVSSSVF*IGSAWTWKASR Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAACTGAGGAGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS CAA 72 bp | TGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTATTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAG | + |
Preference number: 6 (lower is better) Translates to: WLLLSFSLFICI*DRISLDLEGQQ Trigger: CTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAATACAGATGAAGAGACTAAAACTGAGGAGCAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS TCA 72 bp | GCCTCTTGCTCTACAATAGCATACCAGATCTCTCAATaGTTCCTCTTGAAGAGAAGCGCCTTCTGGGTCTCC | + |
Preference number: 6 (lower is better) Translates to: ASCSTIAYQISQ*FLLKRSAFWVS Trigger: GGAGACCCAGAAGGCGCTTCTCTTCAAGAGGAATCATTGAGAGATCTGGTATGCTATTGTAGAGCAAGAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |
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CDS GCA 72 bp | TGTACAATAAATGACCCTTACTGCAGGTCCCATTCATaGGTTCTCTTCCTTTGCAGCCTCTTGCTCTACAAT | + |
Preference number: 6 (lower is better) Translates to: CTINDPYCRSHS*VLFLCSLLLYN Trigger: ATTGTAGAGCAAGAGGCTGCAAAGGAAGAGAACGCATGAATGGGACCTGCAGTAAGGGTCATTTATTGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080533.6 |