Pregenerated sensors for DEFA23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074446

Ensembl transcript IDs: ENSMUST00000098899.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	CTCTTTCCCTGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGATGAGGGC	+
Preference number: 6 (lower is better) Translates to: LFPWLLLSFSLFICV*DRISLDLEGQQDEG Trigger: GCCCTCATCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGGGAAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098899.4
CDS GCA 72 bp	AAAGAGACAGACACAGCCTGGTCCTCTTTCCCTGGCTaGTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTGG	+
Preference number: 6 (lower is better) Translates to: KETDTAWSSFPG*SSVLVSSSVFW Trigger: CCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCAGGGAAAGAGGACCAGGCTGTGTCTGTCTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098899.4
CDS CAA 90 bp	GCCTCTTGTTCTACAATAGCATACCAGATCTCTCAACGATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAAGAGACAGACACAGC	+
Preference number: 6 (lower is better) Translates to: ASCSTIAYQISQRFL*KRRAFWVSKRDRHS Trigger: GCTGTGTCTGTCTCTTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGGTATGCTATTGTAGAACAAGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098899.4
CDS GCA 72 bp	TGTATATTAAATGACCCTTTCTGCAGGTCCCATTCATaGGTTCTCTTCTTTTGCAGCCTCTTGTTCTACAAT	+
Preference number: 6 (lower is better) Translates to: CILNDPFCRSHS*VLFFCSLLFYN Trigger: ATTGTAGAACAAGAGGCTGCAAAAGAAGAGAACGCATGAATGGGACCTGCAGAAAGGGTCATTTAATATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098899.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu