Pregenerated sensors for DEFA22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074443

Ensembl transcript IDs: ENSMUST00000098897.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTCTTGGCCTCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCCCTaGCTGCTCCTCAGTATTAGTCTCTTCATCTGTGTTTTGGATAGG	+
Preference number: 5 (lower is better) Translates to: FLASKGDRHSLVLFP*LLLSISLFICVLDR Trigger: CCTATCCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGAGGCCAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS TCA 90 bp	CGACGTTTTCTACAAAGGCAGATCAGATCTCTCGACAATTTTTCATaGAGAGCAGATCCTTCTTGGCCTCCAAAGGAGACAGACACAGCC	+
Preference number: 5 (lower is better) Translates to: RRFLQRQIRSLDNFS*RADPSWPPKETDTA Trigger: GGCTGTGTCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTTCATGAAAAATTGTCGAGAGATCTGATCTGCCTTTGTAGAAAACGTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS CAA 90 bp	CTCTTCCCCTGGCTGCTCCTCAGTATTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGTCTGGACCTGGTAGGCCAGCAGGATGAGGGC	+
Preference number: 6 (lower is better) Translates to: LFPWLLLSISLFICV*DRISLDLVGQQDEG Trigger: GCCCTCATCCTGCTGGCCTACCAGGTCCAGACTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS CAA 90 bp	GCAGATCAGATCTCTCGACAATTTTTCATGAAGAGCAGATCCTTCTaGGCCTCCAAAGGAGACAGACACAGCCTGGTCCTCTTCCCCTGG	+
Preference number: 6 (lower is better) Translates to: ADQISRQFFMKSRSF*ASKGDRHSLVLFPW Trigger: CCAGGGGAAGAGGACCAGGCTGTGTCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTTCATGAAAAATTGTCGAGAGATCTGATCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS GCA 72 bp	AAGGAGACAGACACAGCCTGGTCCTCTTCCCCTGGCTaGTCCTCAGTATTAGTCTCTTCATCTGTGTTTTGG	+
Preference number: 6 (lower is better) Translates to: KETDTAWSSSPG*SSVLVSSSVFW Trigger: CCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAGGACCAGGCTGTGTCTGTCTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS CAA 72 bp	TGGCTGCTCCTCAGTATTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGTCTGGACCTGGTAGGCCAGCAG	+
Preference number: 6 (lower is better) Translates to: WLLLSISLFICV*DRISLDLVGQQ Trigger: CTGCTGGCCTACCAGGTCCAGACTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS CAA 72 bp	ATCTCTCGACAATTTTTCATGAAGAGCAGATCCTTCTaGGCCTCCAAAGGAGACAGACACAGCCTGGTCCTC	+
Preference number: 6 (lower is better) Translates to: ISRQFFMKSRSF*ASKGDRHSLVL Trigger: GAGGACCAGGCTGTGTCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTTCATGAAAAATTGTCGAGAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098897.2
CDS GCA 72 bp	GTCCTGCGCAGGTCCCATAAAATAGTTCTCCTCTATTaGAGCGACGTTTTCTACAAAGGCAGATCAGATCTC	+
Preference number: 6 (lower is better) Translates to: VLRRSHKIVLLY*SDVFYKGRSDL Trigger: GAGATCTGATCTGCCTTTGTAGAAAACGTCGCTGCAATAGAGGAGAACTATTTTATGGGACCTGCGCAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098897.2

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