Pregenerated sensors for DEFA21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074447Ensembl transcript IDs: ENSMUST00000076754.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AACAATTTATTGAGAAGTGTTCATCAGGCCCCAGCATCAGTGGCCTCAGAGCTGGAGACAGACACAGCCTaGTCATCTTCCCCTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NNLLRSVHQAPASVASELETDTA*SSSPGC Trigger: GCAGCCAGGGGAAGATGACCAGGCTGTGTCTGTCTC...CAGCTCTGAGGCCACTGATGCTGGGGCCTGATGAACACTTCTCAATAAATTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS-3UTR CAA 90 bp | GTTCATCAGGCCCCAGCATCAGTGGCCTCAGAGCTGATGGTTGTCATATCTTTGAAGAGCAGATCCTTCTaGGCCTCCAAAGGAGACAGA | + |
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Preference number: 5 (lower is better) Translates to: VHQAPASVASELMVVISLKSRSF*ASKGDR Trigger: TCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTT...CAAAGATATGACAACCATCAGCTCTGAGGCCACTGATGCTGGGGCCTGATGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS CCA 90 bp | TTCTTGGCCTCCAAAGGAGACAGACACAGCCTGGTCATCTTCCCCTaGCTGCTCCTCAGTATTAGTCTCTTCATCTGTGTTTTGGATAGG | + |
|
Preference number: 5 (lower is better) Translates to: FLASKGDRHSLVIFP*LLLSISLFICVLDR Trigger: CCTATCCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGATGACCAGGCTGTGTCTGTCTCCTTTGGAGGCCAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS-3UTR CAA 90 bp | AGTGTTCATCAGGCCCCAGCATCAGTGGCCTCAGAGCTGATGGTTGTCATATCTCTCTTCATCTGTGTTTaGGATAGGATCAGTCTGGAC | + |
|
Preference number: 5 (lower is better) Translates to: SVHQAPASVASELMVVISLFICV*DRISLD Trigger: GTCCAGACTGATCCTATCCAAAACACAGATGAAGAG...AGATATGACAACCATCAGCTCTGAGGCCACTGATGCTGGGGCCTGATGAACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS TCA 90 bp | CGACGATTTCTACAAAGGCAGATCAGATCTCTCGACAATTTTTCATaGAGAGCAGATCCTTCTTGGCCTCCAAAGGAGACAGACACAGCC | + |
|
Preference number: 5 (lower is better) Translates to: RRFLQRQIRSLDNFS*RADPSWPPKETDTA Trigger: GGCTGTGTCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTTCATGAAAAATTGTCGAGAGATCTGATCTGCCTTTGTAGAAATCGTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS-3UTR CAA 90 bp | GTTCATCAGGCCCCAGCATCAGTGGCCTCAGAGCTGATGGTTGTCATATCTTTGAATAGTTCTCCTCTATaGCAGCGACGATTTCTACAA | + |
|
Preference number: 5 (lower is better) Translates to: VHQAPASVASELMVVISLNSSPL*QRRFLQ Trigger: TTGTAGAAATCGTCGCTGCAATAGAGGAGAACTATT...CAAAGATATGACAACCATCAGCTCTGAGGCCACTGATGCTGGGGCCTGATGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS CAA 90 bp | ATCTTCCCCTGGCTGCTCCTCAGTATTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGTCTGGACCTGGTAGGCCAGCAGGATGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: IFPWLLLSISLFICV*DRISLDLVGQQDEG Trigger: GCCCTCATCCTGCTGGCCTACCAGGTCCAGACTGATCCTATCCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS CAA 90 bp | GCAGATCAGATCTCTCGACAATTTTTCATGAAGAGCAGATCCTTCTaGGCCTCCAAAGGAGACAGACACAGCCTGGTCATCTTCCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: ADQISRQFFMKSRSF*ASKGDRHSLVIFPW Trigger: CCAGGGGAAGATGACCAGGCTGTGTCTGTCTCCTTTGGAGGCCAAGAAGGATCTGCTCTTCATGAAAAATTGTCGAGAGATCTGATCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS GCA 72 bp | AAGGAGACAGACACAGCCTGGTCATCTTCCCCTGGCTaGTCCTCAGTATTAGTCTCTTCATCTGTGTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: KETDTAWSSSPG*SSVLVSSSVFW Trigger: CCAAAACACAGATGAAGAGACTAATACTGAGGAGCAGCCAGGGGAAGATGACCAGGCTGTGTCTGTCTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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| CDS GCA 72 bp | GTCCTGCGCAGGTCCCATAAAATAGTTCTCCTCTATTaGAGCGACGATTTCTACAAAGGCAGATCAGATCTC | + |
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Preference number: 6 (lower is better) Translates to: VLRRSHKIVLLY*SDDFYKGRSDL Trigger: GAGATCTGATCTGCCTTTGTAGAAATCGTCGCTGCAATAGAGGAGAACTATTTTATGGGACCTGCGCAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076754.3 |
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