Pregenerated sensors for DEFA20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095066

Ensembl transcript IDs: ENSMUST00000084042.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCTCCCCTGGCTGCTCCTCAGTATTAGTCTCCTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGGACGAGGGCA	+
Preference number: 5 (lower is better) Translates to: SSPGCSSVLVSSSVF*IGSAWTWKASRTRA Trigger: TGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAGGAGACTAATACTGAGGAGCAGCCAGGGGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084042.4
CDS GCA 90 bp	GGGTCTCCAAAGGAGACAGACACAGCCTGGTCCTCCTCCCCTGGCTaGTCCTCAGTATTAGTCTCCTCATCTGTGTTTTGGATAGGATCA	+
Preference number: 5 (lower is better) Translates to: GSPKETDTAWSSSPG*SSVLVSSSVFWIGS Trigger: TGATCCTATCCAAAACACAGATGAGGAGACTAATACTGAGGAGCAGCCAGGGGAGGAGGACCAGGCTGTGTCTGTCTCCTTTGGAGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084042.4
CDS CCA 90 bp	GTATTAGTCTCCTCATCTGTGTTTTGGATAGGATCAGCCTGGACCTaGAAGGCCAGCAGGACGAGGGCAGAGAGGAGGACAAGTGTCTTC	+
Preference number: 5 (lower is better) Translates to: VLVSSSVFWIGSAWT*KASRTRAERRTSVF Trigger: GAAGACACTTGTCCTCCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAGGAGACTAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084042.4
CDS CCA 90 bp	GCATATCAGATCTCTCGACGATTTTTCATGAAGAGCAGATCCTTCTaGGTCTCCAAAGGAGACAGACACAGCCTGGTCCTCCTCCCCTGG	+
Preference number: 5 (lower is better) Translates to: AYQISRRFFMKSRSF*VSKGDRHSLVLLPW Trigger: CCAGGGGAGGAGGACCAGGCTGTGTCTGTCTCCTTTGGAGACCCAGAAGGATCTGCTCTTCATGAAAAATCGTCGAGAGATCTGATATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084042.4
CDS GCA 72 bp	AAGGAGACAGACACAGCCTGGTCCTCCTCCCCTGGCTaGTCCTCAGTATTAGTCTCCTCATCTGTGTTTTGG	+
Preference number: 6 (lower is better) Translates to: KETDTAWSSSPG*SSVLVSSSVFW Trigger: CCAAAACACAGATGAGGAGACTAATACTGAGGAGCAGCCAGGGGAGGAGGACCAGGCTGTGTCTGTCTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000084042.4

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