Pregenerated sensors for DEFA17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060208

Ensembl transcript IDs: ENSMUST00000079528.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 72 bp	TTAGTCTCTTCATCTGTGTTTTGGATAGGATCAGCCTaGACCTGGAAGGCCAGCAGGACGAGGGCAGAGAGG	+
Preference number: 6 (lower is better) Translates to: LVSSSVFWIGSA*TWKASRTRAER Trigger: CCTCTCTGCCCTCGTCCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079528.6
CDS CCA 72 bp	GGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTTaGATAGGATCAGCCTGGACCTGGAAGGCCAGCAGG	+
Preference number: 6 (lower is better) Translates to: GCSSVLVSSSVF*IGSAWTWKASR Trigger: CCTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079528.6
CDS CAA 72 bp	TGGCTGCTCCTCAGTTTTAGTCTCTTCATCTGTGTTTaGGATAGGATCAGCCTGGACCTGGAAGGCCAGCAG	+
Preference number: 6 (lower is better) Translates to: WLLLSFSLFICV*DRISLDLEGQQ Trigger: CTGCTGGCCTTCCAGGTCCAGGCTGATCCTATCCAAAACACAGATGAAGAGACTAAAACTGAGGAGCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079528.6
CDS CCA 72 bp	ATCTCTCAACGATTCCTCTTGAAGAGAAGAGCCTTCTaGGTCTCCAAAAGAGACAGACACAGCCTGGTCGTC	+
Preference number: 6 (lower is better) Translates to: ISQRFLLKRRAF*VSKRDRHSLVV Trigger: GACGACCAGGCTGTGTCTGTCTCTTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079528.6
CDS CAA 72 bp	TCTACAATAGCATACCAGATCTCTCAACGATTCCTCTaGAAGAGAAGAGCCTTCTGGGTCTCCAAAAGAGAC	+
Preference number: 6 (lower is better) Translates to: STIAYQISQRFL*KRRAFWVSKRD Trigger: GTCTCTTTTGGAGACCCAGAAGGCTCTTCTCTTCAAGAGGAATCGTTGAGAGATCTGGTATGCTATTGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079528.6
CDS GCA 72 bp	TGTACATTAAATGACCCTTTCTGCAGGTCCCATTCATaGGTTCTCTTCTTTTGCAGCCTCTTTTTCTACAAT	+
Preference number: 6 (lower is better) Translates to: CTLNDPFCRSHS*VLFFCSLFFYN Trigger: ATTGTAGAAAAAGAGGCTGCAAAAGAAGAGAACGCATGAATGGGACCTGCAGAAAGGGTCATTTAATGTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079528.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu