Pregenerated sensors for DDX56 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004393Ensembl transcript IDs: ENSMUST00000004507.11, ENSMUST00000151446.2
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCATCCAGGCCAGGATaGCCAATTCAGTGTCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: TVCPHTEHQNVPTNRAESPSRPG*PIQCPQ Trigger: CTGAGGACACTGAATTGGGCATCCTGGCCTGGATGG...GCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| 3UTR-3UTR GCA 90 bp | GATTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCCTGAGCACCAGAATGTaGCCACAAACAGAGCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: DLGKQSFPTFQRVTARGSLSTRM*PQTEQK Trigger: TTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAG...GCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| 3UTR GCA 72 bp | AGCCCAGTAGTACCAAGGAGATGGGGTGTCCAAAGCTaGTTCCTCAAAGTACAGTCTGTCCACACACTGAGC | + |
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Preference number: 3 (lower is better) Translates to: SPVVPRRWGVQS*FLKVQSVHTLS Trigger: GCTCAGTGTGTGGACAGACTGTACTTTGAGGAAGCAGCTTTGGACACCCCATCTCCTTGGTACTACTGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| 3UTR GCA 72 bp | AAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTaGCCACAAACAGAGCAGAAAGCCCACTCCATCCAG | + |
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Preference number: 3 (lower is better) Translates to: KVQSVHTLSTRM*PQTEQKAHSIQ Trigger: CTGGATGGAGTGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| 3UTR CCA 72 bp | TTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCTaGAATCTTTATTCTGCTAATGGACAAAATGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: FPTFQRVTARGS*NLYSANGQNGS Trigger: GCTGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| 3UTR CCA 72 bp | AATGGACAAAATGGCAGCCCAGTAGTACCAAGGAGATaGGGTGTCCAAAGCTGCTTCCTCAAAGTACAGTCT | + |
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Preference number: 3 (lower is better) Translates to: NGQNGSPVVPRR*GVQSCFLKVQS Trigger: AGACTGTACTTTGAGGAAGCAGCTTTGGACACCCCATCTCCTTGGTACTACTGGGCTGCCATTTTGTCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | GCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCAGGCAACGCCTCTCGAATGGCCTaGTTGGTCACTGAGCGCATG | + |
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Preference number: 4 (lower is better) Translates to: AHSIQARMPNSVSSGSGNASRMA*LVTERM Trigger: CATGCGCTCAGTGACCAAGCAGGCCATTCGAGAGGC...GTTGCCTGAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | CAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCTTGCTGGAGCTGGTCTaGCCCCGGCAGCTGGGACTC | + |
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Preference number: 4 (lower is better) Translates to: QSVHTLSTRMCPQTEQKALLELV*PRQLGL Trigger: GAGTCCCAGCTGCCGGGGCCAGACCAGCTCCAGCAA...GGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | AAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCAGGCGCAGAAGCTCCTCCTTaGTCTCCTTCAGTCTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: KAHSIQARMPNSVSSGSGAEAPP*SPSVSP Trigger: AGGCGAGACTGAAGGAGATCAAGGAGGAGCTTCTGC...GCCTGAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | TCCAGAGGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAGGCCTGGGCCTGCCGTaGCAGCTCCTTGGTAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: SRGSQPGAAGIFILLMDKGLGLP*QLLGRN Trigger: GTTCCTACCAAGGAGCTGGCACGGCAGGCCCAGGCC...TTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCCTCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | CCCACAAACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTATCATGGCCTGGGCCTaGCGTGCCAGCTCCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: PTNRAESPLHPGQDAQFSIMAWA*RASSLV Trigger: TACCAAGGAGCTGGCACGGCAGGCCCAGGCCATGAT...ACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTTTGTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | TCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCACGGTATGGAAGCAGGATaGGGGCCTCGCCCTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SVHTLSTRMCPQTEQKAHGMEAG*GPRPLH Trigger: GTGGAGAGGGCGAGGCCCCCATCCTGCTTCCATACC...GTGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | AAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCAGGCGAGGAAGGTCAAAATTaGGGACCGCAGACACGTGGT | + |
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Preference number: 4 (lower is better) Translates to: KAHSIQARMPNSVSSGSGEEGQN*GPQTRG Trigger: ACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTC...GCCTGAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | GGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCAGGGACATGGCCCAAATaGGGCTTCACCACTGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: GSQPGAAGIFILLMDKMAGTWPK*GFTTAG Trigger: CCCGGCAGTGGTGAAGCCTCATTTGGGCCATGTCCC...TGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | AAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGTGCTGGATCATGGCCTaGGCCTGCCGTGCCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KVQSVHTLSTRMCPQTEQCWIMA*ACRASS Trigger: GGAGCTGGCACGGCAGGCCCAGGCCATGATCCAGCA...CTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | AGATTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGGCACCTGGAGCGCAGTaGGAGTTCTCCGTTGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: RFGKAIFSHIPEGHSPGQAPGAQ*EFSVEH Trigger: GTGCTCAACGGAGAACTCCCACTGCGCTCCAGGTGC...CTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | TTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCTGAGGACCGCAGACACGTaGTGGAAGTCTATGCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: FGKAIFSHIPEGHSPGQLRTADT*WKSMPR Trigger: TCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCT...CAGCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | CTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGGCCCCGAGCCACACCTaGCTCTGGATCAGAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LKVQSVHTLSTRMCPQTEAPSHT*LWIRGL Trigger: AAGGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGC...CTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | AAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGGGCCTGCTTGGTCACTaGGCGCATGGCATCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: KVQSVHTLSTRMCPQTEQGLLGH*AHGIPA Trigger: TGCAGGGATGCCATGCGCTCAGTGACCAAGCAGGCC...CTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | ATTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCTCGTGGTGGAAGTCTATaGCCCGAGCCACACCTGACT | + |
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Preference number: 4 (lower is better) Translates to: IWESNLFPHSRGSQPGAARGGSL*PEPHLT Trigger: AGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACG...AGCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | GGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCATCTGGCCCCGGCAGCTaGGACTCCTGTAACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSQPGAAGIFILLMDKMASGPGS*DSCNLR Trigger: CCTCAAGTTACAGGAGTCCCAGCTGCCGGGGCCAGA...TGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | AACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAACTGTGAGATGATGTaGCACCTGGAGCGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: NRAESPLHPGQDAQFSVLNCEMM*HLERSG Trigger: CCCACTGCGCTCCAGGTGCCACATCATCTCACAGTT...GAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | GGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCAACCGCAGACACGTGGTaGAAGTCTATGCCCCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GSQPGAAGIFILLMDKMATADTW*KSMPRA Trigger: GGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGT...TGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | GTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCACTATGCCTGGGTTGTTaGCTCGAGCTGTCCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VCPHTEHQNVPTNRAESPLCLGC*LELSCQ Trigger: CTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAG...TGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | AACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCTTTGCCCCGAATCAGTaGCAGCTTGAGCAGGGCATA | + |
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Preference number: 4 (lower is better) Translates to: NRAESPLHPGQDAQFSVLFAPNQ*QLEQGI Trigger: TATGCCCTGCTCAAGCTGTCACTGATTCGGGGCAAA...GAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | ACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGCCTTGGTTGAACTGTaGGATGATGTGGCACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: TEQKAHSIQARMPNSVSSALVEL*DDVAPG Trigger: TCCAGGTGCCACATCATCTCACAGTTCAACCAAGGC...TGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | ACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCAGCCCATTCACCACTGCCGGGTaGAAGGGCAGATCATGGCGA | + |
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Preference number: 4 (lower is better) Translates to: TARGSWNLYSANGQNGSPFTTAG*KGRSWR Trigger: TCGCCATGATCTGCCCTTGCACCCGGCAGTGGTGAA...TGGGCTGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | GGGTGTCCAAAGCTGCTTCCTCAAAGTACAGTCTGTCCACACACTGAGCACCAGCCAGCGCCAGAGGAATaGCCTTTTCCTGGATCAACG | + |
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Preference number: 4 (lower is better) Translates to: GCPKLLPQSTVCPHTEHQPAPEE*PFPGST Trigger: CGTTGATCCAGGAAAAGGCCATTCCTCTGGCGCTGG...CTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAGGAAGCAGCTTTGGACACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | GCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCGACAGAGAAGACTCTTaGGTTCATCCTCAAAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: AESPLHPGQDAQFSVLRLDREDS*VHPQSQ Trigger: TTGGCTTTGAGGATGAACTCAAGAGTCTTCTCTGTC...GAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | CAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCTCATGGCGAAGTAGCTaGAGGTCTCTGGGGTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: QSVHTLSTRMCPQTEQKASWRSS*RSLGLS Trigger: AGACAACCCCAGAGACCTTCAGCTACTTCGCCATGA...GGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | CCCACAAACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTATGGACATAAGCCTCTaGGGTGGGAGGAAGGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: PTNRAESPLHPGQDAQFSMDISL*GGRKVK Trigger: TTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCAT...ACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTTTGTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | AACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCATCAACACAGCTCTCTaGGAAGCTGAGTCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: NRAESPLHPGQDAQFSVLINTAL*EAESSA Trigger: TGCAGAAGACTCAGCTTCTCAGAGAGCTGTGTTGAT...GAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | ACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCGAATCAGTGACAGCTTaGGCAGGGCATACAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TVCPHTEHQNVPTNRAESESVTA*AGHTAA Trigger: TGCTGCTGTATGCCCTGCTCAAGCTGTCACTGATTC...GCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | TCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCACCAAAGGTCAGAACTATaGCTGGGTTGTTGGCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: SVHTLSTRMCPQTEQKAHQRSEL*LGCWLE Trigger: CTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTG...GTGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | AACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCTCAAGAAGGCTTTGCTaGGGGCTTAGGTTTCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: NRAESPLHPGQDAQFSVLSRRLC*GLRFLS Trigger: GGAAAGAAACCTAAGCCCGCAGCAAAGCCTTCTTGA...GAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | CAGAGGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATCTCGAATGGCCTGCTTaGTCACTGAGCGCATGGCAT | + |
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Preference number: 4 (lower is better) Translates to: QRVTARGSWNLYSANGQNLEWPA*SLSAWH Trigger: ATGCCATGCGCTCAGTGACCAAGCAGGCCATTCGAG...ATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | CTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGTCACGCAGTGGGTTCTaGGCCTTCACCTTCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: LKVQSVHTLSTRMCPQTESRSGF*AFTFLA Trigger: GGCTAAGAAGGTGAAGGCCCAGAACCCACTGCGTGA...CTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | ACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCTGTCTTGAGCTTCTCTaGGTGCAGAAGCTCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: TVCPHTEHQNVPTNRAESCLELL*VQKLLL Trigger: AAGGAGGAGCTTCTGCACTCAGAGAAGCTCAAGACA...GCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | TTCCTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACACGGAATAGCATAAGCTaGGGTCTTCCCGGAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: FLKVQSVHTLSTRMCPQTRNSIS*GLPGAC Trigger: ACAGGCTCCGGGAAGACCGCAGCTTATGCTATTCCG...TGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | ACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCAGCCCAGGTTTCTTTCCCCTGTaGTTAAAGTCACGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: TARGSWNLYSANGQNGSPGFFPL*LKSRSG Trigger: CCCACTGCGTGACTTTAAGCACAGGGGAAAGAAACC...TGGGCTGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | CTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGGGAATGGCCTTTTCCTaGATCAACGTAGGTCGCGAC | + |
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Preference number: 4 (lower is better) Translates to: LKVQSVHTLSTRMCPQTEGMAFS*INVGRD Trigger: GTCGCGACCTACGTTGATCCAGGAAAAGGCCATTCC...CTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | GCTAATGGACAAAATGGCAGCCCAGTAGTACCAAGGAGATGGGGTGTCCAAAGCTTGAGCTTCTCTGAGTaGAGAAGCTCCTCCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: ANGQNGSPVVPRRWGVQSLSFSE*RSSSLI Trigger: GATCAAGGAGGAGCTTCTGCACTCAGAGAAGCTCAA...GCTTTGGACACCCCATCTCCTTGGTACTACTGGGCTGCCATTTTGTCCATTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | ACATTCCAGAGGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACGTTTGCCTTTGACTTaGGGTCCCAAGATTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TFQRVTARGSWNLYSANGRLPLT*GPKISA Trigger: TGCTGAAATCTTGGGACCCCAAGTCAAAGGCAAACG...TCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCCTCTGGAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | TCCAGAGGGTCACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAGTAGCTGAAGGTCTCTaGGGTTGTCTTCAAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: SRGSQPGAAGIFILLMDKVAEGL*GCLQSM Trigger: CATACTTTGAAGACAACCCCAGAGACCTTCAGCTAC...TTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGTGACCCTCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR TCA 90 bp | CTTTATTCTGCTAATGGACAAAATGGCAGCCCAGTAGTACCAAGGAGATGGGGTCGCAGGAAGGAATGCTaGACTGTTCCAGGAAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: LYSANGQNGSPVVPRRWGRRKEC*TVPGKD Trigger: GTCTTTTCCTGGAACAGTTCAGCATTCCTTCCTGCG...ACCCCATCTCCTTGGTACTACTGGGCTGCCATTTTGTCCATTAGCAGAATAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR GCA 90 bp | TTCCTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAAGTTTCAAGGTGTTCTaGTGCAAGTGGCTTAACACT | + |
|
Preference number: 4 (lower is better) Translates to: FLKVQSVHTLSTRMCPQTSFKVF*CKWLNT Trigger: AGTGTTAAGCCACTTGCAGCAGAACACCTTGAAACT...TGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CCA 90 bp | CCTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGACAATCATACAAGCCTTaGTTGAACTGTGAGATGATG | + |
|
Preference number: 4 (lower is better) Translates to: PQSTVCPHTEHQNVPTNRQSYKP*LNCEMM Trigger: CATCATCTCACAGTTCAACCAAGGCTTGTATGATTG...TCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 90 bp | GAGGACCGCAGACACGTGGTGGAAGTCTATGCCCCGAGCCACACCTaGCTCTGGATCAGAGGCCTTGTTTCCTTTGGACCCGCGGCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: EDRRHVVEVYAPSHT*LWIRGLVSFGPAAS Trigger: CGAGGCCGCGGGTCCAAAGGAAACAAGGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 90 bp | CGCCTTCTTGTGGAGAAGCGACTGAAGCATCGGAATAGCATAAGCTaGGGTCTTCCCGGAGCCTGTGCGGGCGCGGGCCAGGAGGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: RLLVEKRLKHRNSIS*GLPGACAGAGQEVL Trigger: AAGGACCTCCTGGCCCGCGCCCGCACAGGCTCCGGGAAGACCGCAGCTTATGCTATTCCGATGCTTCAGTCGCTTCTCCACAAGAAGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004507.11 ENSMUST00000151446.2 |
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| CDS CCA 90 bp | TCTGCGGTGGGAGGAAGGTCAAAATTGAGGACCGCAGACACGTGGTaGAAGTCTATGCCCCGAGCCACACCTGACTCTGGATCAGAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SAVGGRSKLRTADTW*KSMPRATPDSGSEA Trigger: GGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 90 bp | GCCTCTGCGGTGGGAGGAAGGTCAAAATTGAGGACCGCAGACACGTaGTGGAAGTCTATGCCCCGAGCCACACCTGACTCTGGATCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: ASAVGGRSKLRTADT*WKSMPRATPDSGSE Trigger: CTCTGATCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 90 bp | GCTGTTCCGCGGGCAACACAAAGGTCAGAACTATGCCTGGGTTGTTaGCTCGAGCTGTCCTGCCAGCTCGATGGACATAAGCCTCTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: AVPRATQRSELCLGC*LELSCQLDGHKPLR Trigger: CCGCAGAGGCTTATGTCCATCGAGCTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCGCGGAACAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 90 bp | CAGCTCGATGGACATAAGCCTCTGCGGTGGGAGGAAGGTCAAAATTaGGGACCGCAGACACGTGGTGGAAGTCTATGCCCCGAGCCACAC | + |
|
Preference number: 5 (lower is better) Translates to: QLDGHKPLRWEEGQN*GPQTRGGSLCPEPH Trigger: GTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCATCGAGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 90 bp | GTTGTTGGCTCGAGCTGTCCTGCCAGCTCGATGGACATAAGCCTCTaGGGTGGGAGGAAGGTCAAAATTGAGGACCGCAGACACGTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VVGSSCPASSMDISL*GGRKVKIEDRRHVV Trigger: CACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCATCGAGCTGGCAGGACAGCTCGAGCCAACAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | GATTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCACAGACCACCTGAAATaGCTGGAGCTGGTCTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: DLGKQSFPTFQRVTARGSTDHLK*LELVWP Trigger: GGGCCAGACCAGCTCCAGCAATTTCAGGTGGTCTGT...GCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS-3UTR CAA 90 bp | GCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCACAAAGAGCAAGGCTTaGCCCCGAATCAGTGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: AESPLHPGQDAQFSVLRLTKSKA*PRISDS Trigger: GCTGTCACTGATTCGGGGCAAAGCCTTGCTCTTTGT...GAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | TTTGGGAAAGCAATCTTTTCCCACATTCCAGAGGGTCACAGCCCGGGGCAGCTGTCTCGAATGGCCTGCTaGGTCACTGAGCGCATGGCA | + |
|
Preference number: 5 (lower is better) Translates to: FGKAIFSHIPEGHSPGQLSRMAC*VTERMA Trigger: TGCCATGCGCTCAGTGACCAAGCAGGCCATTCGAGA...CAGCTGCCCCGGGCTGTGACCCTCTGGAATGTGGGAAAAGATTGCTTTCCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 90 bp | TTCCCAAGAAAGGCTGTTCCGCGGGCAACACAAAGGTCAGAACTATaGCTGGGTTGTTGGCTCGAGCTGTCCTGCCAGCTCGATGGACAT | + |
|
Preference number: 5 (lower is better) Translates to: FPRKAVPRATQRSEL*LGCWLELSCQLDGH Trigger: ATGTCCATCGAGCTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCGCGGAACAGCCTTTCTTGGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 90 bp | TGCTGCGGGCTTAGGTTTCTTTCCCCTGTGCTTAAAGTCACGCAGTaGGTTCTGGGCCTTCACCTTCTTAGCCTTCCTAGAGAAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: CCGLRFLSPVLKVTQ*VLGLHLLSLPREGH Trigger: GTGCCCTTCTCTAGGAAGGCTAAGAAGGTGAAGGCCCAGAACCCACTGCGTGACTTTAAGCACAGGGGAAAGAAACCTAAGCCCGCAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS-3UTR CAA 90 bp | TCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCACAGAACTATGCCTGGGTaGTTGGCTCGAGCTGTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: SVHTLSTRMCPQTEQKAHRTMPG*LARAVL Trigger: CAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCT...GTGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | GTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCCCATGCAGAAGCTCCTCCTaGATCTCCTTCAGTCTCGCC | + |
|
Preference number: 5 (lower is better) Translates to: VCPHTEHQNVPTNRAESPCRSSS*ISFSLA Trigger: GGCGAGACTGAAGGAGATCAAGGAGGAGCTTCTGCA...TGGGCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS TCA 90 bp | CTTGATCTCCTTCAGTCTCGCCTCTCGAATGGCCTGCTTGGTCACTaGGCGCATGGCATCCCTGCAGCGATAACGAAAGCTTTCAATCTC | + |
|
Preference number: 5 (lower is better) Translates to: LDLLQSRLSNGLLGH*AHGIPAAITKAFNL Trigger: GAGATTGAAAGCTTTCGTTATCGCTGCAGGGATGCCATGCGCTCAGTGACCAAGCAGGCCATTCGAGAGGCGAGACTGAAGGAGATCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 90 bp | GGCTTCACCACTGCCGGGTGCAAGGGCAGATCATGGCGAAGTAGCTaGAGGTCTCTGGGGTTGTCTTCAAAGTATGTCTTGAGCTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GFTTAGCKGRSWRSS*RSLGLSSKYVLSFS Trigger: AGAGAAGCTCAAGACATACTTTGAAGACAACCCCAGAGACCTTCAGCTACTTCGCCATGATCTGCCCTTGCACCCGGCAGTGGTGAAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 90 bp | GGCCCCGGCAGCTGGGACTCCTGTAACTTGAGGGTAACCGGGTTATaGAGTACCAGCTCCTTCAGAGTTTGTACATCCTCATTGAAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GPGSWDSCNLRVTGL*STSSFRVCTSSLKV Trigger: CACTTTCAATGAGGATGTACAAACTCTGAAGGAGCTGGTACTGCATAACCCGGTTACCCTCAAGTTACAGGAGTCCCAGCTGCCGGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004507.11 ENSMUST00000151446.2 |
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| CDS CCA 90 bp | GCCTTGTTTCCTTTGGACCCGCGGCCTCGACGTTTGCCTTTGACTTaGGGTCCCAAGATTTCAGCATCTGTCGCTATGACGCAATCATAC | + |
|
Preference number: 5 (lower is better) Translates to: ALFPLDPRPRRLPLT*GPKISASVAMTQSY Trigger: GTATGATTGCGTCATAGCGACAGATGCTGAAATCTTGGGACCCCAAGTCAAAGGCAAACGTCGAGGCCGCGGGTCCAAAGGAAACAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 90 bp | GAAAGCTTTCAATCTCCTCCATCTGGAACTGGTATGGAAGCAGGATaGGGGCCTCGCCCTCTCCACTCAGAAGGTCCTCAATCTTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: ESFQSPPSGTGMEAG*GPRPLHSEGPQSFP Trigger: TGGGAAAGATTGAGGACCTTCTGAGTGGAGAGGGCGAGGCCCCCATCCTGCTTCCATACCAGTTCCAGATGGAGGAGATTGAAAGCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | CCCACAAACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTCCCCTCTCTAGAGTGTaGACAAAGAGCAAGGCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: PTNRAESPLHPGQDAQFSPLSRV*TKSKAL Trigger: CAAAGCCTTGCTCTTTGTCAACACTCTAGAGAGGGG...ACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGTTTGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | GCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGGCTCTCATACAAGCCTTGGTaGAACTGTGAGATGATGTGG | + |
|
Preference number: 5 (lower is better) Translates to: AESPLHPGQDAQFSVLRLSYKPW*NCEMMW Trigger: CCACATCATCTCACAGTTCAACCAAGGCTTGTATGA...GAGCCTGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 90 bp | GGCTTAGGTTTCTTTCCCCTGTGCTTAAAGTCACGCAGTGGGTTCTaGGCCTTCACCTTCTTAGCCTTCCTAGAGAAGGGCACCTTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GLGFFPLCLKSRSGF*AFTFLAFLEKGTFL Trigger: GAGAAAGGTGCCCTTCTCTAGGAAGGCTAAGAAGGTGAAGGCCCAGAACCCACTGCGTGACTTTAAGCACAGGGGAAAGAAACCTAAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | GCTAATGGACAAAATGGCAGCCCAGTAGTACCAAGGAGATGGGGTGTCCAAAGCCCTCGACGTTTGCCTTaGACTTGGGGTCCCAAGATT | + |
|
Preference number: 5 (lower is better) Translates to: ANGQNGSPVVPRRWGVQSPRRLP*TWGPKI Trigger: AATCTTGGGACCCCAAGTCAAAGGCAAACGTCGAGG...GCTTTGGACACCCCATCTCCTTGGTACTACTGGGCTGCCATTTTGTCCATTAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 90 bp | CCCAAGATTTCAGCATCTGTCGCTATGACGCAATCATACAAGCCTTaGTTGAACTGTGAGATGATGTGGCACCTGGAGCGCAGTGGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: PKISASVAMTQSYKP*LNCEMMWHLERSGS Trigger: ACTCCCACTGCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTGTATGATTGCGTCATAGCGACAGATGCTGAAATCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | ACAGAGCAGAAAGCCCACTCCATCCAGGCCAGGATGCCCAATTCAGTGTCCTCAGTTTGTACATCCTCATaGAAAGTGGCCGACATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: TEQKAHSIQARMPNSVSSVCTSS*KVADMR Trigger: TCTCATGTCGGCCACTTTCAATGAGGATGTACAAAC...TGAGGACACTGAATTGGGCATCCTGGCCTGGATGGAGTGGGCTTTCTGCTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | CTCAAAGTACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGTGGGACTCCTGTAACTaGAGGGTAACCGGGTTATGC | + |
|
Preference number: 5 (lower is better) Translates to: LKVQSVHTLSTRMCPQTEWDSCN*RVTGLC Trigger: GCATAACCCGGTTACCCTCAAGTTACAGGAGTCCCA...CTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGTACTTTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | ACAGCCCGGGGCAGCTGGAATCTTTATTCTGCTAATGGACAAAATGGCAGCCCATACAGCAGCAAGAACTaGTCCTCTTCTGTCTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: TARGSWNLYSANGQNGSPYSSKN*SSSVSQ Trigger: CTGTGAGACAGAAGAGGACAAGTTCTTGCTGCTGTA...TGGGCTGCCATTTTGTCCATTAGCAGAATAAAGATTCCAGCTGCCCCGGGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS-3UTR CAA 90 bp | ACAGTCTGTCCACACACTGAGCACCAGAATGTGCCCACAAACAGAGCAGAAAGCTCTTCAAAGTATGTCTaGAGCTTCTCTGAGTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: TVCPHTEHQNVPTNRAESSSKYV*SFSECR Trigger: TCTGCACTCAGAGAAGCTCAAGACATACTTTGAAGA...GCTTTCTGCTCTGTTTGTGGGCACATTCTGGTGCTCAGTGTGTGGACAGACTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 72 bp | GTGGAGAAGCGACTGAAGCATCGGAATAGCATAAGCTaGGGTCTTCCCGGAGCCTGTGCGGGCGCGGGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: VEKRLKHRNSIS*GLPGACAGAGQ Trigger: CTGGCCCGCGCCCGCACAGGCTCCGGGAAGACCGCAGCTTATGCTATTCCGATGCTTCAGTCGCTTCTCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004507.11 ENSMUST00000151446.2 |
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| CDS CAA 90 bp | ATGCCCCGAGCCACACCTGACTCTGGATCAGAGGCCTTGTTTCCTTaGGACCCGCGGCCTCGACGTTTGCCTTTGACTTGGGGTCCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: MPRATPDSGSEALFP*DPRPRRLPLTWGPK Trigger: CTTGGGACCCCAAGTCAAAGGCAAACGTCGAGGCCGCGGGTCCAAAGGAAACAAGGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 90 bp | TGGAAGTCTATGCCCCGAGCCACACCTGACTCTGGATCAGAGGCCTaGTTTCCTTTGGACCCGCGGCCTCGACGTTTGCCTTTGACTTGG | + |
|
Preference number: 6 (lower is better) Translates to: WKSMPRATPDSGSEA*FPLDPRPRRLPLTW Trigger: CCAAGTCAAAGGCAAACGTCGAGGCCGCGGGTCCAAAGGAAACAAGGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 72 bp | TCAGAACTATGCCTGGGTTGTTGGCTCGAGCTGTCCTaGCAGCTCGATGGACATAAGCCTCTGCGGTGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SELCLGCWLELS*QLDGHKPLRWE Trigger: CTCCCACCGCAGAGGCTTATGTCCATCGAGCTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 72 bp | AAGGCTGTTCCGCGGGCAACACAAAGGTCAGAACTATaGCTGGGTTGTTGGCTCGAGCTGTCCTGCCAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: KAVPRATQRSEL*LGCWLELSCQL Trigger: GAGCTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCGCGGAACAGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS GCA 72 bp | TCCTTGATCTCCTTCAGTCTCGCCTCTCGAATGGCCTaGTTGGTCACTGAGCGCATGGCATCCCTGCAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: SLISFSLASRMA*LVTERMASLQR Trigger: TCGCTGCAGGGATGCCATGCGCTCAGTGACCAAGCAGGCCATTCGAGAGGCGAGACTGAAGGAGATCAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | AGACACGTGGTGGAAGTCTATGCCCCGAGCCACACCTaGCTCTGGATCAGAGGCCTTGTTTCCTTTGGACCC | + |
|
Preference number: 6 (lower is better) Translates to: RHVVEVYAPSHT*LWIRGLVSFGP Trigger: GGGTCCAAAGGAAACAAGGCCTCTGATCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | GGACATAAGCCTCTGCGGTGGGAGGAAGGTCAAAATTaGGGACCGCAGACACGTGGTGGAAGTCTATGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: GHKPLRWEEGQN*GPQTRGGSLCP Trigger: GGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | CTTCAGTCTCGCCTCTCGAATGGCCTGCTTGGTCACTaGGCGCATGGCATCCCTGCAGCGATAACGAAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LQSRLSNGLLGH*AHGIPAAITKA Trigger: AGCTTTCGTTATCGCTGCAGGGATGCCATGCGCTCAGTGACCAAGCAGGCCATTCGAGAGGCGAGACTGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS GCA 72 bp | TCGAGCTGTCCTGCCAGCTCGATGGACATAAGCCTCTaGGGTGGGAGGAAGGTCAAAATTGAGGACCGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: SSCPASSMDISL*GGRKVKIEDRR Trigger: TCTGCGGTCCTCAATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCATCGAGCTGGCAGGACAGCTCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 72 bp | AGGGAGTCCCGGAGTTTCAAGGTGTTCTGCTGCAAGTaGCTTAACACTCGGGATGGGGTTCCCACCACCACA | + |
|
Preference number: 6 (lower is better) Translates to: RESRSFKVFCCK*LNTRDGVPTTT Trigger: TGTGGTGGTGGGAACCCCATCCCGAGTGTTAAGCCACTTGCAGCAGAACACCTTGAAACTCCGGGACTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004507.11 ENSMUST00000151446.2 |
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| CDS CCA 72 bp | CCTTTGGACCCGCGGCCTCGACGTTTGCCTTTGACTTaGGGTCCCAAGATTTCAGCATCTGTCGCTATGACG | + |
|
Preference number: 6 (lower is better) Translates to: PLDPRPRRLPLT*GPKISASVAMT Trigger: CGTCATAGCGACAGATGCTGAAATCTTGGGACCCCAAGTCAAAGGCAAACGTCGAGGCCGCGGGTCCAAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 72 bp | GGAGGAAGGTCAAAATTGAGGACCGCAGACACGTGGTaGAAGTCTATGCCCCGAGCCACACCTGACTCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: GGRSKLRTADTW*KSMPRATPDSG Trigger: TCCAGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 72 bp | GTGGGAGGAAGGTCAAAATTGAGGACCGCAGACACGTaGTGGAAGTCTATGCCCCGAGCCACACCTGACTCT | + |
|
Preference number: 6 (lower is better) Translates to: VGGRSKLRTADT*WKSMPRATPDS Trigger: AGAGTCAGGTGTGGCTCGGGGCATAGACTTCCACCACGTGTCTGCGGTCCTCAATTTTGACCTTCCTCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 72 bp | CAATCTCCTCCATCTGGAACTGGTATGGAAGCAGGATaGGGGCCTCGCCCTCTCCACTCAGAAGGTCCTCAA | + |
|
Preference number: 6 (lower is better) Translates to: QSPPSGTGMEAG*GPRPLHSEGPQ Trigger: TTGAGGACCTTCTGAGTGGAGAGGGCGAGGCCCCCATCCTGCTTCCATACCAGTTCCAGATGGAGGAGATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CAA 72 bp | ATGATGTGGCACCTGGAGCGCAGTGGGAGTTCTCCGTaGAGCACGCAGGAAGGAATGCTGAACTGTTCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: MMWHLERSGSSP*STQEGMLNCSR Trigger: CCTGGAACAGTTCAGCATTCCTTCCTGCGTGCTCAACGGAGAACTCCCACTGCGCTCCAGGTGCCACATCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS CCA 72 bp | CGGGCAACACAAAGGTCAGAACTATGCCTGGGTTGTTaGCTCGAGCTGTCCTGCCAGCTCGATGGACATAAG | + |
|
Preference number: 6 (lower is better) Translates to: RATQRSELCLGC*LELSCQLDGHK Trigger: CTTATGTCCATCGAGCTGGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
||
| CDS TCA 72 bp | CGCTATGACGCAATCATACAAGCCTTGGTTGAACTGTaGGATGATGTGGCACCTGGAGCGCAGTGGGAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: RYDAIIQALVEL*DDVAPGAQWEF Trigger: GAACTCCCACTGCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTGTATGATTGCGTCATAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | ACTGCCGGGTGCAAGGGCAGATCATGGCGAAGTAGCTaGAGGTCTCTGGGGTTGTCTTCAAAGTATGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TAGCKGRSWRSS*RSLGLSSKYVL Trigger: CAAGACATACTTTGAAGACAACCCCAGAGACCTTCAGCTACTTCGCCATGATCTGCCCTTGCACCCGGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 72 bp | TTCTTTCCCCTGTGCTTAAAGTCACGCAGTGGGTTCTaGGCCTTCACCTTCTTAGCCTTCCTAGAGAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: FFPLCLKSRSGF*AFTFLAFLEKG Trigger: GCCCTTCTCTAGGAAGGCTAAGAAGGTGAAGGCCCAGAACCCACTGCGTGACTTTAAGCACAGGGGAAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 72 bp | TATGTCTTGAGCTTCTCTGAGTGCAGAAGCTCCTCCTaGATCTCCTTCAGTCTCGCCTCTCGAATGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: YVLSFSECRSSS*ISFSLASRMAC Trigger: GCAGGCCATTCGAGAGGCGAGACTGAAGGAGATCAAGGAGGAGCTTCTGCACTCAGAGAAGCTCAAGACATA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | CAAAGAGCAAGGCTTTGCCCCGAATCAGTGACAGCTTaGGCAGGGCATACAGCAGCAAGAACTTGTCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: QRARLCPESVTA*AGHTAARTCPL Trigger: AAGAGGACAAGTTCTTGCTGCTGTATGCCCTGCTCAAGCTGTCACTGATTCGGGGCAAAGCCTTGCTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 72 bp | TCAGCATCTGTCGCTATGACGCAATCATACAAGCCTTaGTTGAACTGTGAGATGATGTGGCACCTGGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: SASVAMTQSYKP*LNCEMMWHLER Trigger: GCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTGTATGATTGCGTCATAGCGACAGATGCTGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 72 bp | GCATCTGTCGCTATGACGCAATCATACAAGCCTTGGTaGAACTGTGAGATGATGTGGCACCTGGAGCGCAGT | + |
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Preference number: 6 (lower is better) Translates to: ASVAMTQSYKPW*NCEMMWHLERS Trigger: ACTGCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTGTATGATTGCGTCATAGCGACAGATGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 90 bp | TCTTCAAAGTATGTCTTGAGCTTCTCTGAGTGCAGAAGCTCCTCCTaGATCTCCTTCAGTCTCGCCTCTCGAATGGCCTGCTTGGTCACT | + |
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Preference number: 6 (lower is better) Translates to: SSKYVLSFSECRSSS*ISFSLASRMACLVT Trigger: AGTGACCAAGCAGGCCATTCGAGAGGCGAGACTGAAGGAGATCAAGGAGGAGCTTCTGCACTCAGAGAAGCTCAAGACATACTTTGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS TCA 72 bp | AGTGTTGACAAAGAGCAAGGCTTTGCCCCGAATCAGTaGCAGCTTGAGCAGGGCATACAGCAGCAAGAACTT | + |
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Preference number: 6 (lower is better) Translates to: SVDKEQGFAPNQ*QLEQGIQQQEL Trigger: AAGTTCTTGCTGCTGTATGCCCTGCTCAAGCTGTCACTGATTCGGGGCAAAGCCTTGCTCTTTGTCAACACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CCA 72 bp | CTTAGGTTTCTTTCCCCTGTGCTTAAAGTCACGCAGTaGGTTCTGGGCCTTCACCTTCTTAGCCTTCCTAGA | + |
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Preference number: 6 (lower is better) Translates to: LRFLSPVLKVTQ*VLGLHLLSLPR Trigger: TCTAGGAAGGCTAAGAAGGTGAAGGCCCAGAACCCACTGCGTGACTTTAAGCACAGGGGAAAGAAACCTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 90 bp | AAGATTTCAGCATCTGTCGCTATGACGCAATCATACAAGCCTTGGTaGAACTGTGAGATGATGTGGCACCTGGAGCGCAGTGGGAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: KISASVAMTQSYKPW*NCEMMWHLERSGSS Trigger: AGAACTCCCACTGCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTGTATGATTGCGTCATAGCGACAGATGCTGAAATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004507.11 |
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| CDS CAA 72 bp | GGTAACCGGGTTATGCAGTACCAGCTCCTTCAGAGTTaGTACATCCTCATTGAAAGTGGCCGACATGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: GNRVMQYQLLQS*YILIESGRHEK Trigger: TTTCTCATGTCGGCCACTTTCAATGAGGATGTACAAACTCTGAAGGAGCTGGTACTGCATAACCCGGTTACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004507.11 ENSMUST00000151446.2 |
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