RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDX54 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029599

Ensembl transcript IDs: ENSMUST00000031598.11

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGTTGGCGCAGGCTGCTTTCTCTCTTCCATGTGAAGAAGGGCAATaGCACCACAGCCTTTCTCTGCCCCGCAGCAGTCCTGAGCTGCCT +
Preference number: 1 (lower is better)
Translates to: GLAQAAFSLPCEEGQ*HHSLSLPRSSPELP
Trigger: AGGCAGCTCAGGACTGCTGCGGGGCAGAGAAAGGCTGTGGTGGCATTGCCCTTCTTCACATGGAAGAGAGAAAGCAGCCTGCGCCAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CCA 90 bp TGCCACCACAGCCTTTCTCTGCCCCGCAGCAGTCCTGAGCTGCCTTaGGTGACTCATTTTCCTCATCTCAGTGACCAGGAGGGACACGCA +
Preference number: 1 (lower is better)
Translates to: CHHSLSLPRSSPELP*VTHFPHLSDQEGHA
Trigger: TGCGTGTCCCTCCTGGTCACTGAGATGAGGAAAATGAGTCACCCAAGGCAGCTCAGGACTGCTGCGGGGCAGAGAAAGGCTGTGGTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 90 bp AGGGACACGCAGGCATGGCCACCTGCTCTCAGCCTCAACAACAGCTaGGACACCTTCCAAAAACATCCTGAGGAAGCCACACTCCTGGTC +
Preference number: 1 (lower is better)
Translates to: RDTQAWPPALSLNNS*DTFQKHPEEATLLV
Trigger: GACCAGGAGTGTGGCTTCCTCAGGATGTTTTTGGAAGGTGTCTCAGCTGTTGTTGAGGCTGAGAGCAGGTGGCCATGCCTGCGTGTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 90 bp GCATCCTTTCAGAGGTCACCCAATGTCCCAGTCAAAAGCAGCTGTTaGTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGCCTGT +
Preference number: 1 (lower is better)
Translates to: ASFQRSPNVPVKSSC*SVAIWHYSSQSSAC
Trigger: ACAGGCGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGACTGGGACATTGGGTGACCTCTGAAAGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 90 bp TGCTCTCAGCCTCAACAACAGCTGAGACACCTTCCAAAAACATCCTaGGGAAGCCACACTCCTGGTCTACTAGAGGCAGTAAAGTTTATT +
Preference number: 1 (lower is better)
Translates to: CSQPQQQLRHLPKTS*GSHTPGLLEAVKFI
Trigger: AATAAACTTTACTGCCTCTAGTAGACCAGGAGTGTGGCTTCCTCAGGATGTTTTTGGAAGGTGTCTCAGCTGTTGTTGAGGCTGAGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCGCAGGCATGGCCACCTaGTCTCAGCCTCAACAACAG +
Preference number: 2 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPAGMAT*SQPQQQ
Trigger: CTGTTGTTGAGGCTGAGAGCAGGTGGCCATGCCTGC...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGACCACAGCCTTTCTCTaGCCCGCAGCAGTCCTGAGC +
Preference number: 2 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERTTAFL*PAAVLS
Trigger: GCTCAGGACTGCTGCGGGGCAGAGAAAGGCTGTGGT...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR TCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCGCATCCACACGGCCCTaGTCTCTGAATCCTGAAGGT +
Preference number: 2 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCASTRP*SLNPEG
Trigger: ACCTTCAGGATTCAGAGATCAGGGCCGTGTGGATGC...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCCTGGGGTCTGGCTACTaGAGGATGCTTCACACACAC +
Preference number: 2 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPLGSGY*RMLHTH
Trigger: GTGTGTGTGAAGCATCCTCCAGTAGCCAGACCCCAG...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTCCACCACAACAGGCTTaGGGACAGGCCTCTCCCAGC +
Preference number: 2 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTPPQQA*GQASPS
Trigger: GCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGG...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR TCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCTTTCTCTCTTCCATGTaGAGAAGGGCAATGCCACCA +
Preference number: 2 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPFLSSM*RRAMPP
Trigger: TGGTGGCATTGCCCTTCTTCACATGGAAGAGAGAAA...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CCA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCAGGAAGCCACACTCCTaGTCTACTAGAGGCAGTAAA +
Preference number: 2 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLRKPHS*STRGSK
Trigger: TTTACTGCCTCTAGTAGACCAGGAGTGTGGCTTCCT...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCAATGTGTGCCTGACCTaGACTGGGGTCTGGCTACTG +
Preference number: 2 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGNVCLT*TGVWLL
Trigger: CAGTAGCCAGACCCCAGTGCAGGTCAGGCACACATT...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CAA 90 bp AAGCAAGAGGTGGAAAAAGCCACCAGCAGAATGAAGACACGAGGGTaGGCGCAGGCTGCTTTCTCTCTTCCATGTGAAGAAGGGCAATGC +
Preference number: 2 (lower is better)
Translates to: KQEVEKATSRMKTRG*AQAAFSLPCEEGQC
Trigger: GCATTGCCCTTCTTCACATGGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCTTTTTCCACCTCTTGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCATCAGATGGAGCCCAGTaGACTCCAGGATGTGCACTT +
Preference number: 2 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSSDGAQ*TPGCAL
Trigger: AAGTGCACATCCTGGAGTGCACTGGGCTCCATCTGA...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAGTCAAAAGCAGCTGTTaGTCTGTGGCCATATGGCAC +
Preference number: 2 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSVKSSC*SVAIWH
Trigger: GTGCCATATGGCCACAGAGCAACAGCTGCTTTTGAC...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR GCA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAGTCAGGACTTGGGTCTaGCTGCTTTGCATAGCTAGA +
Preference number: 2 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSVRTWV*LLCIAR
Trigger: TCTAGCTATGCAAAGCAGGCAGACCCAAGTCCTGAC...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CCA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAATTAAAACTCAATGCTaGGTCAGAGGCATCCACACG +
Preference number: 2 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSIKTQC*VRGIHT
Trigger: CGTGTGGATGCCTCTGACCCAGCATTGAGTTTTAAT...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGTCCACCACAACAGGCTaGGGGACAGGCCTCTCCCAG +
Preference number: 3 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERSTTTG*GTGLSQ
Trigger: CTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGA...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CAA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCTTGCAGGGTCAGGACTaGGGTCTGCCTGCTTTGCAT +
Preference number: 3 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPLQGQD*GLPALH
Trigger: ATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAA...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp TGGAAGGATCTTCCAACAGCACATGGACATAGTCCCTaGCGTCCACACCCGGGGCTACCAGGAAGCCCCAGG +
Preference number: 3 (lower is better)
Translates to: WKDLPTAHGHSP*RPHPGLPGSPR
Trigger: CCTGGGGCTTCCTGGTAGCCCCGGGTGTGGACGTCAGGGACTATGTCCATGTGCTGTTGGAAGATCCTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp CTTCCTAATCCGGCCTGGCGAACGGTGAAGGGGACCTaGGGGACCAAGTCCCACATTTCTTGGTGTGCAGGC +
Preference number: 3 (lower is better)
Translates to: LPNPAWRTVKGT*GTKSHISWCAG
Trigger: GCCTGCACACCAAGAAATGTGGGACTTGGTCCCTCAGGTCCCCTTCACCGTTCGCCAGGCCGGATTAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CAA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCAGCGGCAGGGGATTATaGGTACCATCTGCTCTTCGG +
Preference number: 3 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLSGRGL*VPSALR
Trigger: CCGAAGAGCAGATGGTACCAATAATCCCCTGCCGCT...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGAGTCAAAAGCAGCTGTaGCTCTGTGGCCATATGGCA +
Preference number: 3 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERSQKQL*LCGHMA
Trigger: TGCCATATGGCCACAGAGCAACAGCTGCTTTTGACT...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp ATGCCACCACAGCCTTTCTCTGCCCCGCAGCAGTCCTaGGCTGCCTTGGGTGACTCATTTTCCTCATCTCAG +
Preference number: 3 (lower is better)
Translates to: MPPQPFSAPQQS*AALGDSFSSSQ
Trigger: CTGAGATGAGGAAAATGAGTCACCCAAGGCAGCTCAGGACTGCTGCGGGGCAGAGAAAGGCTGTGGTGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp ACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCATGTaGAGAAGGGCAATGCCACCACAGCCTTTCTCTGCC +
Preference number: 3 (lower is better)
Translates to: TRVGAGCFLSSM*RRAMPPQPFSA
Trigger: GGCAGAGAAAGGCTGTGGTGGCATTGCCCTTCTTCACATGGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp CAGGCTGCTTTCTCTCTTCCATGTGAAGAAGGGCAATaGCACCACAGCCTTTCTCTGCCCCGCAGCAGTCCT +
Preference number: 3 (lower is better)
Translates to: QAAFSLPCEEGQ*HHSLSLPRSSP
Trigger: AGGACTGCTGCGGGGCAGAGAAAGGCTGTGGTGGCATTGCCCTTCTTCACATGGAAGAGAGAAAGCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CCA 72 bp GTCCCAGTCAAAAGCAGCTGTTGCTCTGTGGCCATATaGCACTACTCCTCACAGAGCAGCGCCTGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: VPVKSSCCSVAI*HYSSQSSACGR
Trigger: CCTTCCACAGGCGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGACTGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CCA 72 bp AGCCTTTCTCTGCCCCGCAGCAGTCCTGAGCTGCCTTaGGTGACTCATTTTCCTCATCTCAGTGACCAGGAG +
Preference number: 3 (lower is better)
Translates to: SLSLPRSSPELP*VTHFPHLSDQE
Trigger: CTCCTGGTCACTGAGATGAGGAAAATGAGTCACCCAAGGCAGCTCAGGACTGCTGCGGGGCAGAGAAAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CCA 72 bp GAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTaGGTCTGCCTGCTTTGCATAGCTAGACTCCTATGC +
Preference number: 3 (lower is better)
Translates to: EPEAAVTCRVRT*VCLLCIARLLC
Trigger: GCATAGGAGTCTAGCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp AAACTCAATGCTGGGTCAGAGGCATCCACACGGCCCTaGTCTCTGAATCCTGAAGGTGTGGAACCAGAAGCC +
Preference number: 3 (lower is better)
Translates to: KLNAGSEASTRP*SLNPEGVEPEA
Trigger: GGCTTCTGGTTCCACACCTTCAGGATTCAGAGATCAGGGCCGTGTGGATGCCTCTGACCCAGCATTGAGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp CAGAGGTCACCCAATGTCCCAGTCAAAAGCAGCTGTTaGTCTGTGGCCATATGGCACTACTCCTCACAGAGC +
Preference number: 3 (lower is better)
Translates to: QRSPNVPVKSSC*SVAIWHYSSQS
Trigger: GCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGACTGGGACATTGGGTGACCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp GAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTaGCTGCTTTGCATAGCTAGACTCCTATGCATCCTT +
Preference number: 3 (lower is better)
Translates to: EAAVTCRVRTWV*LLCIARLLCIL
Trigger: AAGGATGCATAGGAGTCTAGCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp GGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTaGCCCCAGGTGAAGCGGTTTATCATGAACATCTCA +
Preference number: 3 (lower is better)
Translates to: GWGEDVLWPCHL*PQVKRFIMNIS
Trigger: TGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR TCA 72 bp CCTCAACAACAGCTGAGACACCTTCCAAAAACATCCTaGGGAAGCCACACTCCTGGTCTACTAGAGGCAGTA +
Preference number: 3 (lower is better)
Translates to: PQQQLRHLPKTS*GSHTPGLLEAV
Trigger: TACTGCCTCTAGTAGACCAGGAGTGTGGCTTCCTCAGGATGTTTTTGGAAGGTGTCTCAGCTGTTGTTGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp ACTTGGGTCTGCCTGCTTTGCATAGCTAGACTCCTATaGATCCTTTCAGAGGTCACCCAATGTCCCAGTCAA +
Preference number: 3 (lower is better)
Translates to: TWVCLLCIARLL*ILSEVTQCPSQ
Trigger: TTGACTGGGACATTGGGTGACCTCTGAAAGGATGCATAGGAGTCTAGCTATGCAAAGCAGGCAGACCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR GCA 72 bp GTTTATCATGAACATCTCAGCCACACTGGCCAAACTTaGCCTGGCTCAGCCTACAGCTACTGCTTCCTAATC +
Preference number: 3 (lower is better)
Translates to: VYHEHLSHTGQT*PGSAYSYCFLI
Trigger: GATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CTGGGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCCGGCCAAAGGCGCCCTaGCGCAGCTCCTGGGCTCGG +
Preference number: 4 (lower is better)
Translates to: LGLPLWGWGEDVLWPCHLRPKAP*RSSWAR
Trigger: CCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCG...GAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCCAGCTGGCTGGCGGTCCCACTTGAGCTaGTGCTGCCCCCGGCTCATG +
Preference number: 4 (lower is better)
Translates to: GHSIHHNRLGDRPLPAGWRSHLS*CCPRLM
Trigger: CATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCG...CCAGCCAGCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCGCACCAGCCACCTGCTaGTCAAAGGCCCCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPAPATC*SKAPPA
Trigger: GGCTGGAGGGGCCTTTGAGCAGCAGGTGGCTGGTGC...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp CTGGGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCCGAGCGCATGCGGCCTaGGGGTACACTGGAAGCTCG +
Preference number: 4 (lower is better)
Translates to: LGLPLWGWGEDVLWPCHLRAHAA*GYTGSS
Trigger: CGAGCTTCCAGTGTACCCGCAGGCCGCATGCGCTCG...GAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CTGGGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTCGCTGTCGCGGCCTTaGGAAGCCCCAGTTCGGCGT +
Preference number: 4 (lower is better)
Translates to: LGLPLWGWGEDVLWPCHLSLSRP*EAPVRR
Trigger: ACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGA...GAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCGACGTTGTCCAGCAGTaGGATGTCCAGGCCCCGGGC +
Preference number: 4 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPDVVQQ*DVQAPG
Trigger: GCCCGGGGCCTGGACATCCCACTGCTGGACAACGTC...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCAGCTGGGCCTTCCTaGCTTTCCTGGCGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLSAGPS*LSWRRC
Trigger: GCAGCGGCGCCAGGAAAGGCAGGAAGGCCCAGCTGA...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGAACAGCACCGTCTGGTaGCCCCCAGGAAGGCGGCCT +
Preference number: 4 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERNSTVW*PPGRRP
Trigger: AGGCCGCCTTCCTGGGGGCCACCAGACGGTGCTGTT...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCCAGCTCCCGGGTGGGTaGGAGGATGAGGGCTCGAGC +
Preference number: 4 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSQLPGG*EDEGSS
Trigger: GCTCGAGCCCTCATCCTCTCACCCACCCGGGAGCTG...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCACGCGGTGCAGGCCCTaGAGATCCAGGGATGCCCCC +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSTRCRP*RSRDAP
Trigger: GGGGGCATCCCTGGATCTTCAGGGCCTGCACCGCGT...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGCGCACATACTGCTGCTaGGCGTTGTTGGCCACGCGG +
Preference number: 4 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERRTYCC*ALLATR
Trigger: CCGCGTGGCCAACAACGCTCAGCAGCAGTATGTGCG...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCGCCCCCATGGCAGTCTaGAGGCTGCTGTCCTCATCA +
Preference number: 4 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPAPMAV*RLLSSS
Trigger: TGATGAGGACAGCAGCCTGCAGACTGCCATGGGGGC...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCGAGAACAGCACCGTCTaGTGGCCCCCAGGAAGGCGG +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCENSTV*WPPGRR
Trigger: CCGCCTTCCTGGGGGCCACCAGACGGTGCTGTTCTC...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCGCCGCTGCTGGAAACTaGCAACAGCTTTCCGGTCCC +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCAAAGN*QQLSGP
Trigger: GGGACCGGAAAGCTGTTGCCAGTTTCCAGCAGCGGC...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCCAGCTGGCTGGTCCTGGCGCCGCTGCTaGAAACTGGCAACAGCTTTC +
Preference number: 4 (lower is better)
Translates to: GHSIHHNRLGDRPLPAGWSWRRC*KLATAF
Trigger: GAAAGCTGTTGCCAGTTTCCAGCAGCGGCGCCAGGA...CCAGCCAGCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAAAGGACGGGCCAGGGTaGCAGAGCGGCCCAGGAACA +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIKDGPG*QSGPGT
Trigger: TGTTCCTGGGCCGCTCTGTCACCCTGGCCCGTCCTT...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCAACCGCATCTGCCACTaGAGGCTCCTCACAAGGACG +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCNRICH*RLLTRT
Trigger: CGTCCTTGTGAGGAGCCTTCAGTGGCAGATGCGGTT...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCGGTGCAGGAAGAGCTTaGCCTTGGCAGGGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCGAGRA*PWQGSC
Trigger: ACAGCTTCCCTGCCAAGGGCAAGCTCTTCCTGCACC...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCCAGCTGGCTGGGGTAACTCAGGCCCATaGACTGGAAGCCTCCAGACT +
Preference number: 4 (lower is better)
Translates to: GHSIHHNRLGDRPLPAGWGNSGP*TGSLQT
Trigger: AGTCTGGAGGCTTCCAGTCCATGGGCCTGAGTTACC...CCAGCCAGCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCGGGGGCTGGGTCAGCTaGGCCTTCCTGCCTTTCCTG +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSGGWVS*AFLPFL
Trigger: CAGGAAAGGCAGGAAGGCCCAGCTGACCCAGCCCCC...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp TCAAAAGCAGCTGTTGCTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGCGAGGGCGCTGGCCGTaGGCGCACATACTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SKAAVALWPYGTTPHRAARGRWP*AHILLL
Trigger: CAGCAGCAGTATGTGCGCTCACGGCCAGCGCCCTCG...CGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCGCTCCTTGGCTCTCTTaGTGGACTCAGGCGAGGGCG +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSAPWLS*WTQARA
Trigger: CGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGC...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCTCTTCCGGTCCCACTTaGGCTGCTGCTGCCCCCGGC +
Preference number: 4 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGSSGPT*AAAAPG
Trigger: GCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGA...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCCCCCCGTCTGTGCACTaGGTGCCTTCAGCCGCTCAA +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSPPSVH*VPSAAQ
Trigger: TTGAGCGGCTGAAGGCACGCAGTGCACAGACGGGGG...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
60% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGTGCCACTTCGGCCTaGTCGGGCCACACGGCCCAC +
Preference number: 4 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTCATSA*SGHTAH
Trigger: GTGGGCCGTGTGGCCCGAGCAGGCCGAAGTGGCACA...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCGAGCTGAAGAGTGGGTaGAAGCCCAGCTCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCELKSG*KPSSAR
Trigger: CCTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTC...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCACAAACACCACAGTCTaGTCCTGGGGCCGAACGACA +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCTNTTV*SWGRTT
Trigger: TGTCGTTCGGCCCCAGGACCAGACTGTGGTGTTTGT...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACCAGGGATGCCCCCATaGCAGTCTGCAGGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIPGMPP*QSAGCC
Trigger: ACAGCAGCCTGCAGACTGCCATGGGGGCATCCCTGG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCCTTGTCTTCTTGGCCTaGCTGCCCCACAAACCGCTT +
Preference number: 4 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLLVFLA*LPHKPL
Trigger: AAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAG...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCAGGCCGTCTTGCCACTaGCTGTCCGGGCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGRPSCH*LSGPWP
Trigger: TGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCT...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCGTGAACTTCATGGTCTaGAGGGCCAGCTCCCGGGTG +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSVNFMV*RASSRV
Trigger: CACCCGGGAGCTGGCCCTGCAGACCATGAAGTTCAC...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCACTTGAGCTGCTGCTaGCCCCGGCTCATGTTCTGT +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCHLSCC*PRLMFC
Trigger: ACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTG...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATATCATCTTGCCCTTCCTaGAGGGAGCACCCCGGCCAA +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCISSCPS*REHPGQ
Trigger: TTGGCCGGGGTGCTCCCTCCAGGAAGGGCAAGATGA...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACAGGAAGGCGGCCTATaGTCTCCTGTAGCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIQEGGL*SPVAAQ
Trigger: CTGAGCAGCTACAGGAGATCATAGGCCGCCTTCCTG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCGCGTGCGATAGTTCTTaGTGCTGTCCACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCACDSS*CCPPAS
Trigger: TGAGGCTGGTGGACAGCATCAAGAACTATCGCACGC...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACTTGCCGGCGCTGCTTaGGGATTTGCTCCTTGGTCT +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCILAGAA*GFAPWS
Trigger: AGACCAAGGAGCAAATCCTCAAGCAGCGCCGGCAAG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCTTTTCCTCATCTTaGCCTTCCTGGAGGGAGCAC +
Preference number: 4 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLSFSSS*PSWREH
Trigger: GTGCTCCCTCCAGGAAGGGCAAGATGAGGAAAAGGA...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCGTGAGGTACTCCGCATaGTGCTTTGTGGCTACAAAC +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCVRYSA*CFVATN
Trigger: GTTTGTAGCCACAAAGCACCATGCGGAGTACCTCAC...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCACCAGCCTCAGGCGTTaGAGCTCTCCCTCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSTSLRR*SSPSSK
Trigger: CTTTGAGGAGGGAGAGCTCCAACGCCTGAGGCTGGT...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCTGGCCACCACATCCTTaGCATCCAAGATCACGGGGA +
Preference number: 4 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSWPPHP*HPRSRG
Trigger: TCCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCA...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCATGTCAGGGTTCTCGTaGAGGGCTGCAAACTGGTCT +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCMSGFS*RAANWS
Trigger: AGACCAGTTTGCAGCCCTGCACGAGAACCCTGACAT...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTCCCACTTGAGCTGCTaGTGCCCCCGGCTCATGTTC +
Preference number: 4 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTSHLSC*CPRLMF
Trigger: GAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGA...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TTGACAGCTGGGCTGGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCCGCTGCTTGAGGATTTaGTCCTTGGTCTTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: LTAGLVTPSTTTGLGTGLRCLRI*SLVLSS
Trigger: GGAACTCAAGACCAAGGAGCAAATCCTCAAGCAGCG...GAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACCAGCCCAGCTGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp TCAAAAGCAGCTGTTGCTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGGCGTCATCCTCCGCCTaGATCTCGAACTCGCCGTCA +
Preference number: 4 (lower is better)
Translates to: SKAAVALWPYGTTPHRAAASSSA*ISNSPS
Trigger: TGACGGCGAGTTCGAGATCCAGGCGGAGGATGACGC...CGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACTCAGGCCCATGGACTaGAAGCCTCCAGACTTCTTC +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCILRPMD*KPPDFF
Trigger: GAAGAAGTCTGGAGGCTTCCAGTCCATGGGCCTGAG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCTGTCCGGGCCATaGCCACCACATCCTTGCCAT +
Preference number: 4 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTCLSGP*PPHPCH
Trigger: ATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCA...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp GGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCTGCAGGGCTGCAAACTaGTCTTCCATTTTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GLPLWGWGEDVLWPCHLCCRAAN*SSILSP
Trigger: TGGAGACAAAATGGAAGACCAGTTTGCAGCCCTGCA...GCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTCTTGGGCAGTGTAGCTaGGAACAGCACCGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTLGQCS*EQHRLV
Trigger: CACCAGACGGTGCTGTTCTCAGCTACACTGCCCAAG...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCTCTTCTTGGCCTGACTaGCCCACAAACCGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSSSWPD*PTNRFF
Trigger: GAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGA...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAGGGCTCGGCGTCGGTTaGGTGCTGAAAGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSGLGVG*VLKAAS
Trigger: TGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCC...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTCCAAGATCACGGGGATaGTCTTCCTCTGGATGGGCG +
Preference number: 4 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTPRSRG*SSSGWA
Trigger: CGCCCATCCAGAGGAAGACCATCCCCGTGATCTTGG...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CAA 72 bp GCTCAGATGGAGCCCAGTGCACTCCAGGATGTGCACTaGCTATGTACAGTGGATCTGAGCGGCAGGGGATTA +
Preference number: 4 (lower is better)
Translates to: AQMEPSALQDVH*LCTVDLSGRGL
Trigger: TAATCCCCTGCCGCTCAGATCCACTGTACATAGCAAGTGCACATCCTGGAGTGCACTGGGCTCCATCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR TCA 90 bp TCAAAAGCAGCTGTTGCTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGCCTCAAAGCATGAGCTaGAGAGTGGGTGCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: SKAAVALWPYGTTPHRAAPQSMS*RVGASP
Trigger: TGGGCTTGCACCCACTCTTCAGCTCATGCTTTGAGG...CGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACCGCATGGTGCTTTGTaGCTACAAACACCACAGTCT +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIPHGAL*LQTPQS
Trigger: AGACTGTGGTGTTTGTAGCCACAAAGCACCATGCGG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATACACTGTCGAAATCCTTaGGCCGGTAGGGGACATAAA +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIHCRNP*AGRGHK
Trigger: TTTATGTCCCCTACCGGCCCAAGGATTTCGACAGTG...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp AGCCACCAGCAGAATGAAGACACGAGGGTTGGCGCAGGCTGCTTTCTCTCTTCCGTTCTCGTGCAGGGCTaGAAACTGGTCTTCCATTTT +
Preference number: 4 (lower is better)
Translates to: SHQQNEDTRVGAGCFLSSVLVQG*KLVFHF
Trigger: AAAATGGAAGACCAGTTTGCAGCCCTGCACGAGAAC...GGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCATGATCTCCTGTAGCTaGTCAGCAAAGCCCATTTCA +
Preference number: 4 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCMISCS*SAKPIS
Trigger: TGAAATGGGCTTTGCTGAGCAGCTACAGGAGATCAT...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp CCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATATTCTTTTTCTTGTTCTaGGCTCGCACCATCTCCCGA +
Preference number: 4 (lower is better)
Translates to: PEAAVTCRVRTWVCLLCIFFFLF*ARTISR
Trigger: TCGGGAGATGGTGCGAGCCCAGAACAAGAAAAAGAA...TATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCAAGGAGGTCTTGAGCTaGTCATTGAGCTTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGKEVLS*SLSLES
Trigger: AGACTCCAAGCTCAATGAGCAGCTCAAGACCTCCTT...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
3UTR CAA 72 bp GTGGAAAAAGCCACCAGCAGAATGAAGACACGAGGGTaGGCGCAGGCTGCTTTCTCTCTTCCATGTGAAGAA +
Preference number: 4 (lower is better)
Translates to: VEKATSRMKTRG*AQAAFSLPCEE
Trigger: TTCTTCACATGGAAGAGAGAAAGCAGCCTGCGCCAACCCTCGTGTCTTCATTCTGCTGGTGGCTTTTTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CCA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCTTTTTCTTGTCTTCTTaGCCTGACTGCCCCACAAAC +
Preference number: 4 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGFFLSS*PDCPTN
Trigger: GTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAA...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR GCA 90 bp TCAAAAGCAGCTGTTGCTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGTTCAAAGAGCCTGTCTaGTTCATCGAACACCACATA +
Preference number: 4 (lower is better)
Translates to: SKAAVALWPYGTTPHRAAFKEPV*FIEHHI
Trigger: TATGTGGTGTTCGATGAAGCAGACAGGCTCTTTGAA...CGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CCCGGCCAAAGGCGCCCTGGCGCAGCTCCTGGGCTCGGCGTCGGTTaGGTGCTGAAAGCTGCTTCAGGCCCCCTCGCTGCAGGAAGCGCT +
Preference number: 5 (lower is better)
Translates to: PGQRRPGAAPGLGVG*VLKAASGPLAAGSA
Trigger: AGCGCTTCCTGCAGCGAGGGGGCCTGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp GCTCTGCCAGGGCCCAGCTTCCTCGCCCGGGCGTCATCCTCCGCCTaGATCTCGAACTCGCCGTCATCCGAGTCGCTGTCGCGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: ALPGPSFLARASSSA*ISNSPSSESLSRPW
Trigger: CCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGAGATCCAGGCGGAGGATGACGCCCGGGCGAGGAAGCTGGGCCCTGGCAGAGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp TTCCTGGAGGGAGCACCCCGGCCAAAGGCGCCCTGGCGCAGCTCCTaGGCTCGGCGTCGGTTGCGTGCTGAAAGCTGCTTCAGGCCCCCT +
Preference number: 5 (lower is better)
Translates to: FLEGAPRPKAPWRSS*ARRRLRAESCFRPP
Trigger: AGGGGGCCTGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGGGTGCTCCCTCCAGGAA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp ATGCGGCCTGCGGGTACACTGGAAGCTCGGGGCTGGGATGTGCCTTaGCTACGACCTCGCTTTCCACCTCTGCGGGGCCCAGGGCCTCGC +
Preference number: 5 (lower is better)
Translates to: MRPAGTLEARGWDVP*LRPRFPPLRGPGPR
Trigger: GCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAGGTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCCGCAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp AGCGCATGCGGCCTGCGGGTACACTGGAAGCTCGGGGCTGGGATGTaGCTTGACTACGACCTCGCTTTCCACCTCTGCGGGGCCCAGGGC +
Preference number: 5 (lower is better)
Translates to: SACGLRVHWKLGAGM*LDYDLAFHLCGAQG
Trigger: GCCCTGGGCCCCGCAGAGGTGGAAAGCGAGGTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCCGCATGCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp GCGAGGGCGCTGGCCGTGAGCGCACATACTGCTGCTGAGCGTTGTTaGCCACGCGGTGCAGGCCCTGAAGATCCAGGGATGCCCCCATGG +
Preference number: 5 (lower is better)
Translates to: ARALAVSAHTAAERC*PRGAGPEDPGMPPW
Trigger: CCATGGGGGCATCCCTGGATCTTCAGGGCCTGCACCGCGTGGCCAACAACGCTCAGCAGCAGTATGTGCGCTCACGGCCAGCGCCCTCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp GGGGCTGGGTCAGCTGGGCCTTCCTGCCTTTCCTGGCGCCGCTGCTaGAAACTGGCAACAGCTTTCCGGTCCCTCTGCCGCTTGGCACGC +
Preference number: 5 (lower is better)
Translates to: GAGSAGPSCLSWRRC*KLATAFRSLCRLAR
Trigger: GCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAGTTTCCAGCAGCGGCGCCAGGAAAGGCAGGAAGGCCCAGCTGACCCAGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCCAGCTGGCTGGAGGAAGCAGGCCGTCTaGCCACTGCCTGTCCGGGCC +
Preference number: 5 (lower is better)
Translates to: GHSIHHNRLGDRPLPAGWRKQAV*PLPVRA
Trigger: GGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCT...CCAGCCAGCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCGGCTGGGTCCCGGCCTaGGCCGTTTCTGGCCCACGA +
Preference number: 5 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPGWVPA*AVSGPR
Trigger: TCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCC...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CAAGCAGGTAGGGGACCTCGTCTGGGGCCACCAAAGAATAGGCTGTaGCACTTCGGCCTGCTCGGGCCACACGGCCCACTCGGTGCAGGA +
Preference number: 5 (lower is better)
Translates to: QAGRGPRLGPPKNRL*HFGLLGPHGPLGAG
Trigger: TCCTGCACCGAGTGGGCCGTGTGGCCCGAGCAGGCCGAAGTGGCACAGCCTATTCTTTGGTGGCCCCAGACGAGGTCCCCTACCTGCTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp CAGCTCCTTGGCTCTCTTGATGGACTCAGGCGAGGGCGCTGGCCGTaGGCGCACATACTGCTGCTGAGCGTTGTTGGCCACGCGGTGCAG +
Preference number: 5 (lower is better)
Translates to: QLLGSLDGLRRGRWP*AHILLLSVVGHAVQ
Trigger: CTGCACCGCGTGGCCAACAACGCTCAGCAGCAGTATGTGCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp GTGGGTGCAAGCCCAGCTCTGCCAGGTCCAGCTCCTTGGCTCTCTTaGTGGACTCAGGCGAGGGCGCTGGCCGTGAGCGCACATACTGCT +
Preference number: 5 (lower is better)
Translates to: VGASPALPGPAPWLS*WTQARALAVSAHTA
Trigger: AGCAGTATGTGCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGCTGGACCTGGCAGAGCTGGGCTTGCACCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CCCATGGCAGTCTGCAGGCTGCTGTCCTCATCATCCACTACACTCTaGGGCACGCGACCCAGCACTCCGTCCCTGCCAACCGCATCTGCC +
Preference number: 5 (lower is better)
Translates to: PMAVCRLLSSSSTTL*GTRPSTPSLPTASA
Trigger: GGCAGATGCGGTTGGCAGGGACGGAGTGCTGGGTCGCGTGCCCCAGAGTGTAGTGGATGATGAGGACAGCAGCCTGCAGACTGCCATGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCTCCATCCTCCGCCTCTaGGCTCCTTGGCTGGGTCCC +
Preference number: 5 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPSILRL*APWLGP
Trigger: GGGACCCAGCCAAGGAGCCAAGAGGCGGAGGATGGA...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp AGGCCGTCTTGCCACTGCCTGTCCGGGCCATGGCCACCACATCCTTaGCATCCAAGATCACGGGGATGGTCTTCCTCTGGATGGGCGTCG +
Preference number: 5 (lower is better)
Translates to: RPSCHCLSGPWPPHP*HPRSRGWSSSGWAS
Trigger: CGACGCCCATCCAGAGGAAGACCATCCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp GTGCCTTCAGCCGCTCAAACATCGGGAGGAGGAAGCAGGCCGTCTTaGCACTGCCTGTCCGGGCCATGGCCACCACATCCTTGCCATCCA +
Preference number: 5 (lower is better)
Translates to: VPSAAQTSGGGSRPS*HCLSGPWPPHPCHP
Trigger: TGGATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTGAGCGGCTGAAGGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp GCAGGCCCTGAAGATCCAGGGATGCCCCCATGGCAGTCTGCAGGCTaGTGTCCTCATCATCCACTACACTCTGGGGCACGCGACCCAGCA +
Preference number: 5 (lower is better)
Translates to: AGPEDPGMPPWQSAG*CPHHPLHSGARDPA
Trigger: TGCTGGGTCGCGTGCCCCAGAGTGTAGTGGATGATGAGGACAGCAGCCTGCAGACTGCCATGGGGGCATCCCTGGATCTTCAGGGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CTTCCGGTCCCACTTGAGCTGCTGCTGCCCCCGGCTCATGTTCTGTaGTTCATCCCCCATCAGGTCCAGGACTGCACCAGCCACCTGCTG +
Preference number: 5 (lower is better)
Translates to: LPVPLELLLPPAHVL*FIPHQVQDCTSHLL
Trigger: CAGCAGGTGGCTGGTGCAGTCCTGGACCTGATGGGGGATGAAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp GCCTGGATCTCGAACTCGCCGTCATCCGAGTCGCTGTCGCGGCCTTaGGAAGCCCCAGTTCGGCGTTTCCGCAGCCTCTTCTTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: AWISNSPSSESLSRP*EAPVRRFRSLFFFH
Trigger: GTGGAAGAAGAAGAGGCTGCGGAAACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGAGATCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CATAAAACTCCTGGTCTCGCTGACGGGTCTCCATCCTCCGCCTCTTaGCTCCTTGGCTGGGTCCCGGCCTTGGCCGTTTCTGGCCCACGA +
Preference number: 5 (lower is better)
Translates to: HKTPGLADGSPSSAS*LLGWVPALAVSGPR
Trigger: TCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAAGAGGCGGAGGATGGAGACCCGTCAGCGAGACCAGGAGTTTTATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp GAGGCCTGCCCGTGCAAATTCCACCAGCAGCTTGGGCAGTGTAGCTaGGAACAGCACCGTCTGGTGGCCCCCAGGAAGGCGGCCTATGAT +
Preference number: 5 (lower is better)
Translates to: EACPCKFHQQLGQCS*EQHRLVAPRKAAYD
Trigger: ATCATAGGCCGCCTTCCTGGGGGCCACCAGACGGTGCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp CAACCGCATCTGCCACTGAAGGCTCCTCACAAGGACGGGCCAGGGTaGCAGAGCGGCCCAGGAACAGGTGTAGGTCAAGCAGGTAGGGGA +
Preference number: 5 (lower is better)
Translates to: QPHLPLKAPHKDGPG*QSGPGTGVGQAGRG
Trigger: TCCCCTACCTGCTTGACCTACACCTGTTCCTGGGCCGCTCTGTCACCCTGGCCCGTCCTTGTGAGGAGCCTTCAGTGGCAGATGCGGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp GCTGTCCACCAGCCTCAGGCGTTGGAGCTCTCCCTCCTCAAAGCATaGGCTGAAGAGTGGGTGCAAGCCCAGCTCTGCCAGGTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: AVHQPQALELSLLKA*AEEWVQAQLCQVQL
Trigger: GAGCTGGACCTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTCATGCTTTGAGGAGGGAGAGCTCCAACGCCTGAGGCTGGTGGACAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CTGAGCGTTGTTGGCCACGCGGTGCAGGCCCTGAAGATCCAGGGATaGCCCCATGGCAGTCTGCAGGCTGCTGTCCTCATCATCCACTAC +
Preference number: 5 (lower is better)
Translates to: LSVVGHAVQALKIQG*PHGSLQAAVLIIHY
Trigger: GTAGTGGATGATGAGGACAGCAGCCTGCAGACTGCCATGGGGGCATCCCTGGATCTTCAGGGCCTGCACCGCGTGGCCAACAACGCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CTTGCCCTTGGCAGGGAAGCTGTAGTTGATGACGTTGTCCAGCAGTaGGATGTCCAGGCCCCGGGCGGCCAGGTCAGTCACGATGAGGGT +
Preference number: 5 (lower is better)
Translates to: LALGREAVVDDVVQQ*DVQAPGGQVSHDEG
Trigger: ACCCTCATCGTGACTGACCTGGCCGCCCGGGGCCTGGACATCCCACTGCTGGACAACGTCATCAACTACAGCTTCCCTGCCAAGGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp GGTCTCCATCCTCCGCCTCTTGGCTCCTTGGCTGGGTCCCGGCCTTaGCCGTTTCTGGCCCACGACTTCTGTGAAGACACCCTCTACAGT +
Preference number: 5 (lower is better)
Translates to: GLHPPPLGSLAGSRP*PFLAHDFCEDTLYS
Trigger: ACTGTAGAGGGTGTCTTCACAGAAGTCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAAGAGGCGGAGGATGGAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp TCAGCCGCTCAAACATCGGGAGGAGGAAGCAGGCCGTCTTGCCACTaGCTGTCCGGGCCATGGCCACCACATCCTTGCCATCCAAGATCA +
Preference number: 5 (lower is better)
Translates to: SAAQTSGGGSRPSCH*LSGPWPPHPCHPRS
Trigger: TGATCTTGGATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTGAGCGGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CTCCGCCTCTTGGCTCCTTGGCTGGGTCCCGGCCTTGGCCGTTTCTaGCCCACGACTTCTGTGAAGACACCCTCTACAGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: LRLLAPWLGPGLGRF*PTTSVKTPSTVSTI
Trigger: GATGGTTGAGACTGTAGAGGGTGTCTTCACAGAAGTCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAAGAGGCGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp ACCTCGCTTTCCACCTCTGCGGGGCCCAGGGCCTCGCTGGTTGGATaGCCCTTCTTCCTCGGAGTCCCGGTCATCAATTTTCTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: TSLSTSAGPRASLVG*PFFLGVPVINFLLL
Trigger: CAGAAGCAGAAAATTGATGACCGGGACTCCGAGGAAGAAGGGCCATCCAACCAGCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGGGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCGCCAGGTCCAGCTCCTaGGCTCTCTTGATGGACTCA +
Preference number: 5 (lower is better)
Translates to: LGLPLWGWGEDVLWPCHLARSSS*ALLMDS
Trigger: TGAGTCCATCAAGAGAGCCAAGGAGCTGGACCTGGC...GAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp GCTGAAAGCTGCTTCAGGCCCCCTCGCTGCAGGAAGCGCTGCTTCTaGGCTTGCCGGCGCTGCTTGAGGATTTGCTCCTTGGTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: AESCFRPPRCRKRCF*ACRRCLRICSLVLS
Trigger: ACTCAAGACCAAGGAGCAAATCCTCAAGCAGCGCCGGCAAGCTCAGAAGCAGCGCTTCCTGCAGCGAGGGGGCCTGAAGCAGCTTTCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCAGGATCAAGGCAGTCTaGAGGCCGGTGAACTTGCCT +
Preference number: 5 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPRIKAV*RPVNLP
Trigger: AGGCAAGTTCACCGGCCTCAAGACTGCCTTGATCCT...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCCGGTGCAGGAAGAGCTaGCCCTTGGCAGGGAAGCTG +
Preference number: 5 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSRCRKS*PLAGKL
Trigger: CAGCTTCCCTGCCAAGGGCAAGCTCTTCCTGCACCG...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CTCACACCCTGGCCCATCAGCAACTCTGTGAGGTACTCCGCATGGTaGTTTGTGGCTACAAACACCACAGTCTGGTCCTGGGGCCGAACG +
Preference number: 5 (lower is better)
Translates to: LTPWPISNSVRYSAW*FVATNTTVWSWGRT
Trigger: CGTTCGGCCCCAGGACCAGACTGTGGTGTTTGTAGCCACAAAGCACCATGCGGAGTACCTCACAGAGTTGCTGATGGGCCAGGGTGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp AGGCGTTGGAGCTCTCCCTCCTCAAAGCATGAGCTGAAGAGTGGGTaGAAGCCCAGCTCTGCCAGGTCCAGCTCCTTGGCTCTCTTGATG +
Preference number: 5 (lower is better)
Translates to: RRWSSPSSKHELKSG*KPSSARSSSLALLM
Trigger: CATCAAGAGAGCCAAGGAGCTGGACCTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTCATGCTTTGAGGAGGGAGAGCTCCAACGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCCACCAGCCTCAGGCGTaGGAGCTCTCCCTCCTCAAA +
Preference number: 5 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSHQPQA*ELSLLK
Trigger: TTTGAGGAGGGAGAGCTCCAACGCCTGAGGCTGGTG...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGTGGCTGCTTGGGTCCTaGCTGGAGGCATTGATCTCA +
Preference number: 5 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERWLLGS*LEALIS
Trigger: TGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCA...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp TCAAAAGCAGCTGTTGCTCTGTGGCCATATGGCACTACTCCTCACAGAGCAGCGTTCTTCCGGTCCCACTaGAGCTGCTGCTGCCCCCGG +
Preference number: 5 (lower is better)
Translates to: SKAAVALWPYGTTPHRAAFFRSH*SCCCPR
Trigger: CCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGAA...CGCTGCTCTGTGAGGAGTAGTGCCATATGGCCACAGAGCAACAGCTGCTTTTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGATTTGCTCCTTGGTCTaGAGTTCCGAGCGCATGCGG +
Preference number: 5 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERICSLV*SSERMR
Trigger: CCGCATGCGCTCGGAACTCAAGACCAAGGAGCAAAT...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CAACTCACACCCTGGCCCATCAGCAACTCTGTGAGGTACTCCGCATaGTGCTTTGTGGCTACAAACACCACAGTCTGGTCCTGGGGCCGA +
Preference number: 5 (lower is better)
Translates to: QLTPWPISNSVRYSA*CFVATNTTVWSWGR
Trigger: TCGGCCCCAGGACCAGACTGTGGTGTTTGTAGCCACAAAGCACCATGCGGAGTACCTCACAGAGTTGCTGATGGGCCAGGGTGTGAGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGAATTCCACCAGCAGCTaGGGCAGTGTAGCTGAGAAC +
Preference number: 5 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERNSTSS*GSVAEN
Trigger: GTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATT...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GGTCACTCCATCCACCACAACAGGCTTGGGGACAGGCCTCTCCCAGCTGGCTGGAGGGTGGAACATTTGTaGTGTGTGAACTTGGCCAAG +
Preference number: 5 (lower is better)
Translates to: GHSIHHNRLGDRPLPAGWRVEHL*CVNLAK
Trigger: CTTGGCCAAGTTCACACACAACAAATGTTCCACCCT...CCAGCCAGCTGGGAGAGGCCTGTCCCCAAGCCTGTTGTGGTGGATGGAGTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp AGCTTTCCGGTCCCTCTGCCGCTTGGCACGCATCATTTGGCTGCTTaGGTCCTTGCTGGAGGCATTGATCTCAAAGATGGTTGTGCGCGT +
Preference number: 5 (lower is better)
Translates to: SFPVPLPLGTHHLAA*VLAGGIDLKDGCAR
Trigger: ACGCGCACAACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGGGCCTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCGACTTCTTCTTTTTCTaGTTCTGGGCTCGCACCATC +
Preference number: 5 (lower is better)
Translates to: LGLPLWGWGEDVLWPCHLDFFFF*FWARTI
Trigger: GATGGTGCGAGCCCAGAACAAGAAAAAGAAGAAGTC...GAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAGGCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCAGGAGGAAGGAGGTCTaGAGCTGCTCATTGAGCTTG +
Preference number: 5 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCRRKEV*SCSLSL
Trigger: CAAGCTCAATGAGCAGCTCAAGACCTCCTTCCTCCT...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp TCATCTCTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCAGCTCCTTGGCTCTCTaGATGGACTCAGGCGAGGGC +
Preference number: 5 (lower is better)
Translates to: SSLPPGEAVYHEHLSHTGSSLAL*MDSGEG
Trigger: GCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGCT...GCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAGAGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGCCTCTGTGGGGGTGGGGAGAGGATGTACTCTGGCCATGTCATCTCTGCCCCTCCTTGCTGGAGGCATaGATCTCAAAGATGGTTGTG +
Preference number: 5 (lower is better)
Translates to: LPLWGWGEDVLWPCHLCPSLLEA*ISKMVV
Trigger: CACAACCATCTTTGAGATCAATGCCTCCAGCAAGGA...GGGGCAGAGATGACATGGCCAGAGTACATCCTCTCCCCACCCCCACAGAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCATCCTTTTCCTCATCTaGCCCTTCCTGGAGGGAGCA +
Preference number: 5 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCILFLI*PFLEGA
Trigger: TGCTCCCTCCAGGAAGGGCAAGATGAGGAAAAGGAT...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp TGCACCAGACGCCCAGGGGTGGCAATGATTATGTCAGGGTTCTCGTaGAGGGCTGCAAACTGGTCTTCCATTTTGTCTCCACCCAGGATC +
Preference number: 5 (lower is better)
Translates to: CTRRPGVAMIMSGFS*RAANWSSILSPPRI
Trigger: GATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGCAGCCCTGCACGAGAACCCTGACATAATCATTGCCACCCCTGGGCGTCTGGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp CGGCCGCTCTCTGTCTTGATCTTTTTCTTGTCTTCTTGGCCTGACTaGCCCACAAACCGCTTCTTCTTCCGGTCCCACTTGAGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: RPLSVLIFFLSSWPD*PTNRFFFRSHLSCC
Trigger: GCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAGCGGCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CTGGCAACAGCTTTCCGGTCCCTCTGCCGCTTGGCACGCATCATTTaGCTGCTTGGGTCCTTGCTGGAGGCATTGATCTCAAAGATGGTT +
Preference number: 5 (lower is better)
Translates to: LATAFRSLCRLARII*LLGSLLEALISKMV
Trigger: AACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp AGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCCTGCTTTGCATAGCACTCCGCATGGTGCTTaGTGGCTACAAACACCACAG +
Preference number: 5 (lower is better)
Translates to: RSRCDLQGQDLGLPALHSTPHGA*WLQTPQ
Trigger: CTGTGGTGTTTGTAGCCACAAAGCACCATGCGGAGT...GCTATGCAAAGCAGGCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp ACTTGCCCTGGCTCAGCCTACAGCTACTGCTTCCTAATCCGGCCTGGCGAACGGCGGCCGCTCTCTGTCTaGATCTTTTTCTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: TCPGSAYSYCFLIRPGERRPLSV*IFFLSS
Trigger: AGAAGACAAGAAAAAGATCAAGACAGAGAGCGGCCG...CCGTTCGCCAGGCCGGATTAGGAAGCAGTAGCTGTAGGCTGAGCCAGGGCAAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp ACGCCCAGGGGTGGCAATGATTATGTCAGGGTTCTCGTGCAGGGCTaGAAACTGGTCTTCCATTTTGTCTCCACCCAGGATCAAGGCAGT +
Preference number: 5 (lower is better)
Translates to: TPRGGNDYVRVLVQG*KLVFHFVSTQDQGS
Trigger: ACTGCCTTGATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGCAGCCCTGCACGAGAACCCTGACATAATCATTGCCACCCCTGGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAATGGCCACCACATCCTaGCCATCCAAGATCACGGGG +
Preference number: 5 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSMATTS*PSKITG
Trigger: CCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCAT...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCTTGTTGTGTGTGAACTaGGCCAAGTTGATCTTGCGG +
Preference number: 5 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCLLCVN*AKLILR
Trigger: CCGCAAGATCAACTTGGCCAAGTTCACACACAACAA...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 90 bp AAACCGGCCGCTCTCTGTCTTGATCTTTTTCTTGTCTTCTTGGCCTaGCTGCCCCACAAACCGCTTCTTCTTCCGGTCCCACTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: KPAALCLDLFLVFLA*LPHKPLLLPVPLEL
Trigger: CAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAGCGGCCGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp CTGCCCCCAGGTGAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTGTCTTGAGCTGCTCATaGAGCTTGGAGTCTACGTCC +
Preference number: 5 (lower is better)
Translates to: LPPGEAVYHEHLSHTGQTVLSCS*SLESTS
Trigger: GGACGTAGACTCCAAGCTCAATGAGCAGCTCAAGAC...AGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTCACCTGGGGGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGGTGTGGAACCAGAAGCCGCTGTGACTTGCAGGGTCAGGACTTGGGTCTGCGTCTTGATCTTTTTCTaGTCTTCTTGGCCTGACTGC +
Preference number: 5 (lower is better)
Translates to: EGVEPEAAVTCRVRTWVCVLIFF*SSWPDC
Trigger: GCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGAC...GCAGACCCAAGTCCTGACCCTGCAAGTCACAGCGGCTTCTGGTTCCACACCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 90 bp TCAAAGAGCCTGTCTGCTTCATCGAACACCACATACTCCACACTCTaGAGCTTCAAGTTCATCTCCACAGCCACATGCACCAGACGCCCA +
Preference number: 5 (lower is better)
Translates to: SKSLSASSNTTYSTL*SFKFISTATCTRRP
Trigger: TGGGCGTCTGGTGCATGTGGCTGTGGAGATGAACTTGAAGCTGCAGAGTGTGGAGTATGTGGTGTTCGATGAAGCAGACAGGCTCTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 90 bp CTGATAAACCGGCCGCTCTCTGTCTTGATCTTTTTCTTGTCTTCTTaGCCTGACTGCCCCACAAACCGCTTCTTCTTCCGGTCCCACTTG +
Preference number: 5 (lower is better)
Translates to: LINRPLSVLIFFLSS*PDCPTNRFFFRSHL
Trigger: CAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAGCGGCCGGTTTATCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS-3UTR CAA 90 bp GAAGCGGTTTATCATGAACATCTCAGCCACACTGGCCAAACTTGCCCTGGCTCAGCGCTGCTTGAGGATTaGCTCCTTGGTCTTGAGTTC +
Preference number: 5 (lower is better)
Translates to: EAVYHEHLSHTGQTCPGSALLED*LLGLEF
Trigger: GAACTCAAGACCAAGGAGCAAATCCTCAAGCAGCGC...TGAGCCAGGGCAAGTTTGGCCAGTGTGGCTGAGATGTTCATGATAAACCGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CCCTTCCTGGAGGGAGCACCCCGGCCAAAGGCGCCCTaGCGCAGCTCCTGGGCTCGGCGTCGGTTGCGTGCT +
Preference number: 6 (lower is better)
Translates to: PFLEGAPRPKAP*RSSWARRRLRA
Trigger: AGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGGGTGCTCCCTCCAGGAAGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CCCCGGCCAAAGGCGCCCTGGCGCAGCTCCTGGGCTCGGCGTCGGTaGCGTGCTGAAAGCTGCTTCAGGCCCCCTCGCTGCAGGAAGCGC +
Preference number: 6 (lower is better)
Translates to: PRPKAPWRSSWARRR*RAESCFRPPRCRKR
Trigger: GCGCTTCCTGCAGCGAGGGGGCCTGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp AGGCGCCCTGGCGCAGCTCCTGGGCTCGGCGTCGGTTaGGTGCTGAAAGCTGCTTCAGGCCCCCTCGCTGCA +
Preference number: 6 (lower is better)
Translates to: RRPGAAPGLGVG*VLKAASGPLAA
Trigger: TGCAGCGAGGGGGCCTGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GGAGCACCCCGGCCAAAGGCGCCCTGGCGCAGCTCCTaGGCTCGGCGTCGGTTGCGTGCTGAAAGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: GAPRPKAPWRSS*ARRRLRAESCF
Trigger: GAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTTTGGCCGGGGTGCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp AAGGCGCCCTGGCGCAGCTCCTGGGCTCGGCGTCGGTaGCGTGCTGAAAGCTGCTTCAGGCCCCCTCGCTGC +
Preference number: 6 (lower is better)
Translates to: KAPWRSSWARRR*RAESCFRPPRC
Trigger: GCAGCGAGGGGGCCTGAAGCAGCTTTCAGCACGCAACCGACGCCGAGCCCAGGAGCTGCGCCAGGGCGCCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GGGCCCAGCTTCCTCGCCCGGGCGTCATCCTCCGCCTaGATCTCGAACTCGCCGTCATCCGAGTCGCTGTCG +
Preference number: 6 (lower is better)
Translates to: GPSFLARASSSA*ISNSPSSESLS
Trigger: CGACAGCGACTCGGATGACGGCGAGTTCGAGATCCAGGCGGAGGATGACGCCCGGGCGAGGAAGCTGGGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CATGCGGCCTGCGGGTACACTGGAAGCTCGGGGCTGGGATGTGCCTaGACTACGACCTCGCTTTCCACCTCTGCGGGGCCCAGGGCCTCG +
Preference number: 6 (lower is better)
Translates to: HAACGYTGSSGLGCA*TTTSLSTSAGPRAS
Trigger: CGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAGGTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCCGCATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CCTCGCTTTCCACCTCTGCGGGGCCCAGGGCCTCGCTaGTTGGATGGCCCTTCTTCCTCGGAGTCCCGGTCA +
Preference number: 6 (lower is better)
Translates to: PRFPPLRGPGPR*LDGPSSSESRS
Trigger: TGACCGGGACTCCGAGGAAGAAGGGCCATCCAACCAGCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp AGGGGACCTCGTCTGGGGCCACCAAAGAATAGGCTGTaGCACTTCGGCCTGCTCGGGCCACACGGCCCACTC +
Preference number: 6 (lower is better)
Translates to: RGPRLGPPKNRL*HFGLLGPHGPL
Trigger: GAGTGGGCCGTGTGGCCCGAGCAGGCCGAAGTGGCACAGCCTATTCTTTGGTGGCCCCAGACGAGGTCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GACGGGTCTCCATCCTCCGCCTCTTGGCTCCTTGGCTaGGTCCCGGCCTTGGCCGTTTCTGGCCCACGACTT +
Preference number: 6 (lower is better)
Translates to: DGSPSSASWLLG*VPALAVSGPRL
Trigger: AAGTCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAAGAGGCGGAGGATGGAGACCCGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp CGCTTTCCACCTCTGCGGGGCCCAGGGCCTCGCTGGTaGGATGGCCCTTCTTCCTCGGAGTCCCGGTCATCA +
Preference number: 6 (lower is better)
Translates to: RFPPLRGPGPRW*DGPSSSESRSS
Trigger: TGATGACCGGGACTCCGAGGAAGAAGGGCCATCCAACCAGCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp GAGCTGAAGAGTGGGTGCAAGCCCAGCTCTGCCAGGTCCAGCTCCTaGGCTCTCTTGATGGACTCAGGCGAGGGCGCTGGCCGTGAGCGC +
Preference number: 6 (lower is better)
Translates to: ELKSGCKPSSARSSS*ALLMDSGEGAGRER
Trigger: GCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGCTGGACCTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp GCGGGTACACTGGAAGCTCGGGGCTGGGATGTGCCTTaGCTACGACCTCGCTTTCCACCTCTGCGGGGCCCA +
Preference number: 6 (lower is better)
Translates to: AGTLEARGWDVP*LRPRFPPLRGP
Trigger: TGGGCCCCGCAGAGGTGGAAAGCGAGGTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp TGGGGCCACCAAAGAATAGGCTGTGCCACTTCGGCCTaGTCGGGCCACACGGCCCACTCGGTGCAGGAAGAG +
Preference number: 6 (lower is better)
Translates to: WGHQRIGCATSA*SGHTAHSVQEE
Trigger: CTCTTCCTGCACCGAGTGGGCCGTGTGGCCCGAGCAGGCCGAAGTGGCACAGCCTATTCTTTGGTGGCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GTTGGCCACGCGGTGCAGGCCCTGAAGATCCAGGGATaGCCCCATGGCAGTCTGCAGGCTGCTGTCCTCATC +
Preference number: 6 (lower is better)
Translates to: VGHAVQALKIQG*PHGSLQAAVLI
Trigger: GATGAGGACAGCAGCCTGCAGACTGCCATGGGGGCATCCCTGGATCTTCAGGGCCTGCACCGCGTGGCCAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GGGTCAGCTGGGCCTTCCTGCCTTTCCTGGCGCCGCTaGTGGAAACTGGCAACAGCTTTCCGGTCCCTCTGC +
Preference number: 6 (lower is better)
Translates to: GSAGPSCLSWRR*WKLATAFRSLC
Trigger: GCAGAGGGACCGGAAAGCTGTTGCCAGTTTCCAGCAGCGGCGCCAGGAAAGGCAGGAAGGCCCAGCTGACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GGCCTGCGGGTACACTGGAAGCTCGGGGCTGGGATGTaGCTTGACTACGACCTCGCTTTCCACCTCTGCGGG +
Preference number: 6 (lower is better)
Translates to: GLRVHWKLGAGM*LDYDLAFHLCG
Trigger: CCCGCAGAGGTGGAAAGCGAGGTCGTAGTCAAGGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp TCGAACTCGCCGTCATCCGAGTCGCTGTCGCGGCCTTaGGAAGCCCCAGTTCGGCGTTTCCGCAGCCTCTTC +
Preference number: 6 (lower is better)
Translates to: SNSPSSESLSRP*EAPVRRFRSLF
Trigger: GAAGAGGCTGCGGAAACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp TCAGCTGGGCCTTCCTGCCTTTCCTGGCGCCGCTGCTaGAAACTGGCAACAGCTTTCCGGTCCCTCTGCCGC +
Preference number: 6 (lower is better)
Translates to: SAGPSCLSWRRC*KLATAFRSLCR
Trigger: GCGGCAGAGGGACCGGAAAGCTGTTGCCAGTTTCCAGCAGCGGCGCCAGGAAAGGCAGGAAGGCCCAGCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CCTCCGCCTCTTGGCTCCTTGGCTGGGTCCCGGCCTTaGCCGTTTCTGGCCCACGACTTCTGTGAAGACACC +
Preference number: 6 (lower is better)
Translates to: PPPLGSLAGSRP*PFLAHDFCEDT
Trigger: GGTGTCTTCACAGAAGTCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAAGAGGCGGAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp CTCGAACTCGCCGTCATCCGAGTCGCTGTCGCGGCCTaGGGAAGCCCCAGTTCGGCGTTTCCGCAGCCTCTT +
Preference number: 6 (lower is better)
Translates to: LELAVIRVAVAA*GSPSSAFPQPL
Trigger: AAGAGGCTGCGGAAACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp AGCCGCTCAAACATCGGGAGGAGGAAGCAGGCCGTCTaGCCACTGCCTGTCCGGGCCATGGCCACCACATCC +
Preference number: 6 (lower is better)
Translates to: SRSNIGRRKQAV*PLPVRAMATTS
Trigger: GGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTGAGCGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CGTGCCTTCAGCCGCTCAAACATCGGGAGGAGGAAGCAGGCCGTCTaGCCACTGCCTGTCCGGGCCATGGCCACCACATCCTTGCCATCC +
Preference number: 6 (lower is better)
Translates to: RAFSRSNIGRRKQAV*PLPVRAMATTSLPS
Trigger: GGATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTGAGCGGCTGAAGGCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp AGTGGGTGCAAGCCCAGCTCTGCCAGGTCCAGCTCCTTGGCTCTCTaGATGGACTCAGGCGAGGGCGCTGGCCGTGAGCGCACATACTGC +
Preference number: 6 (lower is better)
Translates to: SGCKPSSARSSSLAL*MDSGEGAGRERTYC
Trigger: GCAGTATGTGCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCCAAGGAGCTGGACCTGGCAGAGCTGGGCTTGCACCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp ACCCAGCACTCCGTCCCTGCCAACCGCATCTGCCACTaGAGGCTCCTCACAAGGACGGGCCAGGGTGACAGA +
Preference number: 6 (lower is better)
Translates to: TQHSVPANRICH*RLLTRTGQGDR
Trigger: TCTGTCACCCTGGCCCGTCCTTGTGAGGAGCCTTCAGTGGCAGATGCGGTTGGCAGGGACGGAGTGCTGGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp GGCTCTCTTGATGGACTCAGGCGAGGGCGCTGGCCGTaGGCGCACATACTGCTGCTGAGCGTTGTTGGCCAC +
Preference number: 6 (lower is better)
Translates to: GSLDGLRRGRWP*AHILLLSVVGH
Trigger: GTGGCCAACAACGCTCAGCAGCAGTATGTGCGCTCACGGCCAGCGCCCTCGCCTGAGTCCATCAAGAGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GAGGATGAGGGCTCGAGCCCCCGTCTGTGCACTGCGTaGCTTCAGCCGCTCAAACATCGGGAGGAGGAAGCA +
Preference number: 6 (lower is better)
Translates to: EDEGSSPRLCTA*LQPLKHREEEA
Trigger: TGCTTCCTCCTCCCGATGTTTGAGCGGCTGAAGGCACGCAGTGCACAGACGGGGGCTCGAGCCCTCATCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp TTGCTCCTTGGTCTTGAGTTCCGAGCGCATGCGGCCTaGGGGTACACTGGAAGCTCGGGGCTGGGATGTGCC +
Preference number: 6 (lower is better)
Translates to: LLLGLEFRAHAA*GYTGSSGLGCA
Trigger: GGCACATCCCAGCCCCGAGCTTCCAGTGTACCCGCAGGCCGCATGCGCTCGGAACTCAAGACCAAGGAGCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GGCAGGGAAGCTGTAGTTGATGACGTTGTCCAGCAGTaGGATGTCCAGGCCCCGGGCGGCCAGGTCAGTCAC +
Preference number: 6 (lower is better)
Translates to: GREAVVDDVVQQ*DVQAPGGQVSH
Trigger: GTGACTGACCTGGCCGCCCGGGGCCTGGACATCCCACTGCTGGACAACGTCATCAACTACAGCTTCCCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GTCTGCAGGCTGCTGTCCTCATCATCCACTACACTCTaGGGCACGCGACCCAGCACTCCGTCCCTGCCAACC +
Preference number: 6 (lower is better)
Translates to: VCRLLSSSSTTL*GTRPSTPSLPT
Trigger: GGTTGGCAGGGACGGAGTGCTGGGTCGCGTGCCCCAGAGTGTAGTGGATGATGAGGACAGCAGCCTGCAGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CTGGCCGTGAGCGCACATACTGCTGCTGAGCGTTGTTaGCCACGCGGTGCAGGCCCTGAAGATCCAGGGATG +
Preference number: 6 (lower is better)
Translates to: LAVSAHTAAERC*PRGAGPEDPGM
Trigger: CATCCCTGGATCTTCAGGGCCTGCACCGCGTGGCCAACAACGCTCAGCAGCAGTATGTGCGCTCACGGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CGCCTGGATCTCGAACTCGCCGTCATCCGAGTCGCTGTCGCGGCCTaGGGAAGCCCCAGTTCGGCGTTTCCGCAGCCTCTTCTTCTTCCA +
Preference number: 6 (lower is better)
Translates to: RLDLELAVIRVAVAA*GSPSSAFPQPLLLP
Trigger: TGGAAGAAGAAGAGGCTGCGGAAACGCCGAACTGGGGCTTCCCAAGGCCGCGACAGCGACTCGGATGACGGCGAGTTCGAGATCCAGGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CAGGCCGTCTTGCCACTGCCTGTCCGGGCCATGGCCACCACATCCTaGCCATCCAAGATCACGGGGATGGTCTTCCTCTGGATGGGCGTC +
Preference number: 6 (lower is better)
Translates to: QAVLPLPVRAMATTS*PSKITGMVFLWMGV
Trigger: GACGCCCATCCAGAGGAAGACCATCCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp AGCACGGGCTCTGTGAGGCCTGCCCGTGCAAATTCCACCAGCAGCTaGGGCAGTGTAGCTGAGAACAGCACCGTCTGGTGGCCCCCAGGA +
Preference number: 6 (lower is better)
Translates to: STGSVRPARANSTSS*GSVAENSTVWWPPG
Trigger: TCCTGGGGGCCACCAGACGGTGCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGCCTCACAGAGCCCGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp CTACGACCTCGCTTTCCACCTCTGCGGGGCCCAGGGCCTCGCTGGTaGGATGGCCCTTCTTCCTCGGAGTCCCGGTCATCAATTTTCTGC +
Preference number: 6 (lower is better)
Translates to: LRPRFPPLRGPGPRW*DGPSSSESRSSIFC
Trigger: GCAGAAAATTGATGACCGGGACTCCGAGGAAGAAGGGCCATCCAACCAGCGAGGCCCTGGGCCCCGCAGAGGTGGAAAGCGAGGTCGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp CCGTGCAAATTCCACCAGCAGCTTGGGCAGTGTAGCTaGGAACAGCACCGTCTGGTGGCCCCCAGGAAGGCG +
Preference number: 6 (lower is better)
Translates to: PCKFHQQLGQCS*EQHRLVAPRKA
Trigger: CGCCTTCCTGGGGGCCACCAGACGGTGCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp TGCTTCAGGCCCCCTCGCTGCAGGAAGCGCTGCTTCTaGGCTTGCCGGCGCTGCTTGAGGATTTGCTCCTTG +
Preference number: 6 (lower is better)
Translates to: CFRPPRCRKRCF*ACRRCLRICSL
Trigger: CAAGGAGCAAATCCTCAAGCAGCGCCGGCAAGCTCAGAAGCAGCGCTTCCTGCAGCGAGGGGGCCTGAAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp CAAACATCGGGAGGAGGAAGCAGGCCGTCTTGCCACTaGCTGTCCGGGCCATGGCCACCACATCCTTGCCAT +
Preference number: 6 (lower is better)
Translates to: QTSGGGSRPSCH*LSGPWPPHPCH
Trigger: ATGGCAAGGATGTGGTGGCCATGGCCCGGACAGGCAGTGGCAAGACGGCCTGCTTCCTCCTCCCGATGTTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp CCACTTGAGCTGCTGCTGCCCCCGGCTCATGTTCTGTaGTTCATCCCCCATCAGGTCCAGGACTGCACCAGC +
Preference number: 6 (lower is better)
Translates to: PLELLLPPAHVL*FIPHQVQDCTS
Trigger: GCTGGTGCAGTCCTGGACCTGATGGGGGATGAAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp GCTTGCCGGCGCTGCTTGAGGATTTGCTCCTTGGTCTaGAGTTCCGAGCGCATGCGGCCTGCGGGTACACTG +
Preference number: 6 (lower is better)
Translates to: ACRRCLRICSLV*SSERMRPAGTL
Trigger: CAGTGTACCCGCAGGCCGCATGCGCTCGGAACTCAAGACCAAGGAGCAAATCCTCAAGCAGCGCCGGCAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp CAGCCTCAGGCGTTGGAGCTCTCCCTCCTCAAAGCATaGGCTGAAGAGTGGGTGCAAGCCCAGCTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: QPQALELSLLKA*AEEWVQAQLCQ
Trigger: CTGGCAGAGCTGGGCTTGCACCCACTCTTCAGCTCATGCTTTGAGGAGGGAGAGCTCCAACGCCTGAGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp TTGGCTCCTTGGCTGGGTCCCGGCCTTGGCCGTTTCTaGCCCACGACTTCTGTGAAGACACCCTCTACAGTC +
Preference number: 6 (lower is better)
Translates to: LAPWLGPGLGRF*PTTSVKTPSTV
Trigger: GACTGTAGAGGGTGTCTTCACAGAAGTCGTGGGCCAGAAACGGCCAAGGCCGGGACCCAGCCAAGGAGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp GACTGCCCCACAAACCGCTTCTTCTTCCGGTCCCACTaGAGCTGCTGCTGCCCCCGGCTCATGTTCTGTGCT +
Preference number: 6 (lower is better)
Translates to: DCPTNRFFFRSH*SCCCPRLMFCA
Trigger: AGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp ACTGCCCCACAAACCGCTTCTTCTTCCGGTCCCACTTaGGCTGCTGCTGCCCCCGGCTCATGTTCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: TAPQTASSSGPT*AAAAPGSCSVL
Trigger: AAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp AACCGCTTCTTCTTCCGGTCCCACTTGAGCTGCTGCTaGCCCCGGCTCATGTTCTGTGCTTCATCCCCCATC +
Preference number: 6 (lower is better)
Translates to: NRFFFRSHLSCC*PRLMFCASSPI
Trigger: GATGGGGGATGAAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp ACAAACCGCTTCTTCTTCCGGTCCCACTTGAGCTGCTaGTGCCCCCGGCTCATGTTCTGTGCTTCATCCCCC +
Preference number: 6 (lower is better)
Translates to: TNRFFFRSHLSC*CPRLMFCASSP
Trigger: GGGGGATGAAGCACAGAACATGAGCCGGGGGCAGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp TGGCCACCACATCCTTGCCATCCAAGATCACGGGGATaGTCTTCCTCTGGATGGGCGTCGGCACCTTGTAGC +
Preference number: 6 (lower is better)
Translates to: WPPHPCHPRSRG*SSSGWASAPCS
Trigger: GCTACAAGGTGCCGACGCCCATCCAGAGGAAGACCATCCCCGTGATCTTGGATGGCAAGGATGTGGTGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GGAAACTGGCAACAGCTTTCCGGTCCCTCTGCCGCTTaGCACGCATCATTTGGCTGCTTGGGTCCTTGCTGG +
Preference number: 6 (lower is better)
Translates to: GNWQQLSGPSAA*HASFGCLGPCW
Trigger: CCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAGTTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp TCTGTGAGGCCTGCCCGTGCAAATTCCACCAGCAGCTaGGGCAGTGTAGCTGAGAACAGCACCGTCTGGTGG +
Preference number: 6 (lower is better)
Translates to: SVRPARANSTSS*GSVAENSTVWW
Trigger: CCACCAGACGGTGCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGCCTCACAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp TCTTCGCGCACAAGGAGGAAGGAGGTCTTGAGCTGCTCATTGAGCTaGGAGTCTACGTCCAGGCGGATGAGCACGGGCTCTGTGAGGCCT +
Preference number: 6 (lower is better)
Translates to: SSRTRRKEVLSCSLS*ESTSRRMSTGSVRP
Trigger: AGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACTCCAAGCTCAATGAGCAGCTCAAGACCTCCTTCCTCCTTGTGCGCGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp ACAGCACCGTCTGGTGGCCCCCAGGAAGGCGGCCTATaGTCTCCTGTAGCTGCTCAGCAAAGCCCATTTCAA +
Preference number: 6 (lower is better)
Translates to: TAPSGGPQEGGL*SPVAAQQSPFQ
Trigger: TTGAAATGGGCTTTGCTGAGCAGCTACAGGAGATCATAGGCCGCCTTCCTGGGGGCCACCAGACGGTGCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp TGGAAACTGGCAACAGCTTTCCGGTCCCTCTGCCGCTaGGCACGCATCATTTGGCTGCTTGGGTCCTTGCTG +
Preference number: 6 (lower is better)
Translates to: WKLATAFRSLCR*ARIIWLLGSLL
Trigger: CAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAGTTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GTGTCTTCGCGCACAAGGAGGAAGGAGGTCTTGAGCTaGTCATTGAGCTTGGAGTCTACGTCCAGGCGGATG +
Preference number: 6 (lower is better)
Translates to: VSSRTRRKEVLS*SLSLESTSRRM
Trigger: CATCCGCCTGGACGTAGACTCCAAGCTCAATGAGCAGCTCAAGACCTCCTTCCTCCTTGTGCGCGAAGACAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CCCTGGCCCATCAGCAACTCTGTGAGGTACTCCGCATaGTGCTTTGTGGCTACAAACACCACAGTCTGGTCC +
Preference number: 6 (lower is better)
Translates to: PWPISNSVRYSA*CFVATNTTVWS
Trigger: GGACCAGACTGTGGTGTTTGTAGCCACAAAGCACCATGCGGAGTACCTCACAGAGTTGCTGATGGGCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp ACTGGCAACAGCTTTCCGGTCCCTCTGCCGCTTGGCACGCATCATTaGGCTGCTTGGGTCCTTGCTGGAGGCATTGATCTCAAAGATGGT +
Preference number: 6 (lower is better)
Translates to: TGNSFPVPLPLGTHH*AAWVLAGGIDLKDG
Trigger: ACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGACCGGAAAGCTGTTGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp TGGCCCATCAGCAACTCTGTGAGGTACTCCGCATGGTaGTTTGTGGCTACAAACACCACAGTCTGGTCCTGG +
Preference number: 6 (lower is better)
Translates to: WPISNSVRYSAW*FVATNTTVWSW
Trigger: CCAGGACCAGACTGTGGTGTTTGTAGCCACAAAGCACCATGCGGAGTACCTCACAGAGTTGCTGATGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp GTCCCTCTGCCGCTTGGCACGCATCATTTGGCTGCTTaGGTCCTTGCTGGAGGCATTGATCTCAAAGATGGT +
Preference number: 6 (lower is better)
Translates to: VPLPLGTHHLAA*VLAGGIDLKDG
Trigger: ACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCAGAGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp TGCCGCTTGGCACGCATCATTTGGCTGCTTGGGTCCTaGCTGGAGGCATTGATCTCAAAGATGGTTGTGCGC +
Preference number: 6 (lower is better)
Translates to: CRLARIIWLLGS*LEALISKMVVR
Trigger: GCGCACAACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGCGTGCCAAGCGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp CGGCCGCTCTCTGTCTTGATCTTTTTCTTGTCTTCTTaGCCTGACTGCCCCACAAACCGCTTCTTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: RPLSVLIFFLSS*PDCPTNRFFFR
Trigger: CCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAGCGGCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp GCATCATTTGGCTGCTTGGGTCCTTGCTGGAGGCATTaGTCTCAAAGATGGTTGTGCGCGTGCGATAGTTCT +
Preference number: 6 (lower is better)
Translates to: ASFGCLGPCWRH*SQRWLCACDSS
Trigger: AGAACTATCGCACGCGCACAACCATCTTTGAGATCAATGCCTCCAGCAAGGACCCAAGCAGCCAAATGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS TCA 72 bp GCTCTCTGTCTTGATCTTTTTCTTGTCTTCTTGGCCTaGCTGCCCCACAAACCGCTTCTTCTTCCGGTCCCA +
Preference number: 6 (lower is better)
Translates to: ALCLDLFLVFLA*LPHKPLLLPVP
Trigger: TGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGAGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp GGTGGCAATGATTATGTCAGGGTTCTCGTGCAGGGCTaGAAACTGGTCTTCCATTTTGTCTCCACCCAGGAT +
Preference number: 6 (lower is better)
Translates to: GGNDYVRVLVQG*KLVFHFVSTQD
Trigger: ATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGCAGCCCTGCACGAGAACCCTGACATAATCATTGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 90 bp GCAAACTGGTCTTCCATTTTGTCTCCACCCAGGATCAAGGCAGTCTaGAGGCCGGTGAACTTGCCTAGCTCTTTAGTGAACTTCATGGTC +
Preference number: 6 (lower is better)
Translates to: ANWSSILSPPRIKAV*RPVNLPSSLVNFMV
Trigger: GACCATGAAGTTCACTAAAGAGCTAGGCAAGTTCACCGGCCTCAAGACTGCCTTGATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS GCA 72 bp TCTGTCTTGATCTTTTTCTTGTCTTCTTGGCCTGACTaGCCCACAAACCGCTTCTTCTTCCGGTCCCACTTG +
Preference number: 6 (lower is better)
Translates to: SVLIFFLSSWPD*PTNRFFFRSHL
Trigger: CAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGGCAGTCAGGCCAAGAAGACAAGAAAAAGATCAAGACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CCA 72 bp ATGATTATGTCAGGGTTCTCGTGCAGGGCTGCAAACTaGTCTTCCATTTTGTCTCCACCCAGGATCAAGGCA +
Preference number: 6 (lower is better)
Translates to: MIMSGFSCRAAN*SSILSPPRIKA
Trigger: TGCCTTGATCCTGGGTGGAGACAAAATGGAAGACCAGTTTGCAGCCCTGCACGAGAACCCTGACATAATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11
CDS CAA 72 bp TCTTCCATTTTGTCTCCACCCAGGATCAAGGCAGTCTaGAGGCCGGTGAACTTGCCTAGCTCTTTAGTGAAC +
Preference number: 6 (lower is better)
Translates to: SSILSPPRIKAV*RPVNLPSSLVN
Trigger: GTTCACTAAAGAGCTAGGCAAGTTCACCGGCCTCAAGACTGCCTTGATCCTGGGTGGAGACAAAATGGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031598.11