RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDX46 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021500

Ensembl transcript IDs: ENSMUST00000099479.4, ENSMUST00000172272.8, ENSMUST00000223736.2, ENSMUST00000231097.2

Found 362 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCACCGCACCGGTGTGGAGTTTCCGGGAGCACCACTGCACCGGTGTaGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATG +
Preference number: 1 (lower is better)
Translates to: PPHRCGVSGSTTAPV*LLCTLKLTSYTWAM
Trigger: CATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCTCCCGGAAACTCCACACCGGTGCGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 90 bp CTTTCTGCTATATGGATCCAAGATATTGAACTGAGTGATCAGGTTTaGAAGCAAGACTCACATCCACCAAGTCACCTCGCCTGCCCAACA +
Preference number: 1 (lower is better)
Translates to: LSAIWIQDIELSDQV*KQDSHPPSHLACPT
Trigger: TGTTGGGCAGGCGAGGTGACTTGGTGGATGTGAGTCTTGCTTTCAAACCTGATCACTCAGTTCAATATCTTGGATCCATATAGCAGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 90 bp AATAAACCAAGGCCGGAAGAAGTGCTGGTGACAGGGATTCCAGTGTaGTGTTCTAGTTCCTCCTGCTGTAATTGCTCTTTTCTTGAAGTG +
Preference number: 1 (lower is better)
Translates to: NKPRPEEVLVTGIPV*CSSSSCCNCSFLEV
Trigger: CACTTCAAGAAAAGAGCAATTACAGCAGGAGGAACTAGAACATCACACTGGAATCCCTGTCACCAGCACTTCTTCCGGCCTTGGTTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR GCA 90 bp TTATATAAGGCCAAACTGGCTTCAAATTCATCATCTTTCTACCCTTaGCTACTAGGTGCTATGATTACAGGCATGCACCACCTTGCCTCG +
Preference number: 1 (lower is better)
Translates to: LYKAKLASNSSSFYP*LLGAMITGMHHLAS
Trigger: CGAGGCAAGGTGGTGCATGCCTGTAATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGATGAATTTGAAGCCAGTTTGGCCTTATATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR GCA 90 bp GTAATTTCTTTATTTCGATTTACTACATTTATTTACACCTGTGTGTaGATGAGAGAGCACACACGCACAGTAATGCGAATCATAGAACAA +
Preference number: 1 (lower is better)
Translates to: VISLFRFTTFIYTCV*MREHTRTVMRIIEQ
Trigger: TTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCTCATGCACACACAGGTGTAAATAAATGTAGTAAATCGAAATAAAGAAATTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCACACTGTAGCTCTGGCTaGCCTGAAACTCACTATGTA +
Preference number: 2 (lower is better)
Translates to: ARELREHYCTSMEFPGAPHCSSG*PETHYV
Trigger: TACATAGTGAGTTTCAGGCCAGCCAGAGCTACAGTG...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGGGACCATCCTGCCTCTaGCTCCCAAAGGCTGGATTA +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETGPSCL*LPKAGL
Trigger: TAATCCAGCCTTTGGGAGGCAGAGGCAGGATGGTCC...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCACTAAGGGACCATCCTaGCTCTGCCTCCCAAAGGCT +
Preference number: 2 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTTKGPS*LCLPKA
Trigger: AGCCTTTGGGAGGCAGAGGCAGGATGGTCCCTTAGT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGACACCACAATTCCACTaGAAGGACAGGTCAGTGGCC +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETTPQFH*KDRSVA
Trigger: GGCCACTGACCTGTCCTTTCAGTGGAATTGTGGTGT...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCACAACAGGCTGGTCTTaGACTAAGGGACCATCCTGC +
Preference number: 2 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTTTGWS*TKGPSC
Trigger: GCAGGATGGTCCCTTAGTTCAAGACCAGCCTGTTGT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAGTAGATGGTTTTGGATaGGTATGGGGTAGTACTTAC +
Preference number: 2 (lower is better)
Translates to: ARELREHYCTSMEFPGAPVDGFG*VWGSTY
Trigger: GTAAGTACTACCCCATACCCATCCAAAACCATCTAC...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGGAAAGGACAGGTCAGTaGCCCTTAGTGCCTGACAGA +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETERTGQ*PLVPDR
Trigger: TCTGTCAGGCACTAAGGGCCACTGACCTGTCCTTTC...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGGCTAAAACCAAGCACTaGAGAGACAGCTGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETAKTKH*RDSWRR
Trigger: CCTCCTCCAGCTGTCTCTCCAGTGCTTGGTTTTAGC...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCAGACAACTGTAAGCTaGCATGTGGGTGTTGAGACC +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETQTTVS*HVGVET
Trigger: GGTCTCAACACCCACATGGCAGCTTACAGTTGTCTG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTGTGGCCCTTAGTGCCTaGCAGACTTTATTACAGCAT +
Preference number: 2 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPVALSA*QTLLQH
Trigger: ATGCTGTAATAAAGTCTGTCAGGCACTAAGGGCCAC...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCGTGGCCCTTAGTGCCTaGCAGACTTTATTACAGCAT +
Preference number: 2 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCVALSA*QTLLQH
Trigger: ATGCTGTAATAAAGTCTGTCAGGCACTAAGGGCCAC...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCTGAGTGATCAGGTTTaGAAGCAAGACTCACATCCA +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETLSDQV*KQDSHP
Trigger: TGGATGTGAGTCTTGCTTTCAAACCTGATCACTCAG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGCTATATCCTCAGCCTTaGCTGCACGGTTTTTCCACA +
Preference number: 2 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLLYPQP*LHGFST
Trigger: TGTGGAAAAACCGTGCAGGCAAGGCTGAGGATATAG...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGATTTACACCTGTGTGTaGATGAGAGAGCACACACGC +
Preference number: 2 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLIYTCV*MREHTR
Trigger: GCGTGTGTGCTCTCTCATGCACACACAGGTGTAAAT...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCCTATGTAAAACCAGATaGAGAGGACAACAGGCTGGT +
Preference number: 2 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTLCKTR*RGQQAG
Trigger: ACCAGCCTGTTGTCCTCTGCATCTGGTTTTACATAG...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCAAGCTCAGCAGGCTATaGCCAGAGCTTTTTACCTTT +
Preference number: 2 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCKLSRL*PELFTF
Trigger: AAAGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTT...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGAAGCTCAGCAGGCTATaGCCAGAGCTTTTTACCTTT +
Preference number: 2 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLKLSRL*PELFTF
Trigger: AAAGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTT...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTGAAAGGACAGGTCAGTaGCCCTTAGTGCCTGACAGA +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSAERTGQ*PLVPDR
Trigger: TCTGTCAGGCACTAAGGGCCACTGACCTGTCCTTTC...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTGCTAAAACCAAGCACTaGAGAGACAGCTGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSAAKTKH*RDSWRR
Trigger: CCTCCTCCAGCTGTCTCTCCAGTGCTTGGTTTTAGC...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGAAGCTCAGCAGGCTATaGCCAGAGCTTTTTACCTTT +
Preference number: 2 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLKLSRL*PELFTF
Trigger: AAAGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTGTGGCCCTTAGTGCCTaGCAGACTTTATTACAGCAT +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSAVALSA*QTLLQH
Trigger: ATGCTGTAATAAAGTCTGTCAGGCACTAAGGGCCAC...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTACACCACAATTCCACTaGAAGGACAGGTCAGTGGCC +
Preference number: 2 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCTPQFH*KDRSVA
Trigger: GGCCACTGACCTGTCCTTTCAGTGGAATTGTGGTGT...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGATAACTCCATCATCCTaGAGGAAAGTCAGATTAGAA +
Preference number: 2 (lower is better)
Translates to: GVAAVYSEINKLHLGDETITPSS*RKVRLE
Trigger: TTCTAATCTGACTTTCCTTCAGGATGATGGAGTTAT...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTCCCTTGCCTACTAGGTaGTATGATTACAGGCATGCA +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSAPLPTR*YDYRHA
Trigger: TGCATGCCTGTAATCATAGCACCTAGTAGGCAAGGG...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCTCATCTTTCTACCCTTaGCTACTAGGTGCTATGATT +
Preference number: 2 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSSSFYP*LLGAMI
Trigger: AATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGA...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGATGCTCCTAACCTCTaGGTCACTGCCCTTGCCTTA +
Preference number: 2 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCDAPNL*VTALAL
Trigger: TAAGGCAAGGGCAGTGACGCAGAGGTTAGGAGCATC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCGCACTTTCTGCTATATaGATCCAAGATATTGAACTG +
Preference number: 2 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTALSAI*IQDIEL
Trigger: CAGTTCAATATCTTGGATCCATATAGCAGAAAGTGC...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCAGGTGGCTGTCACTATaGCTTTTAAATATGTTACAC +
Preference number: 2 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTRWLSL*LLNMLH
Trigger: GTGTAACATATTTAAAAGCCATAGTGACAGCCACCT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGGCACTTTCTGCTATATaGATCCAAGATATTGAACTG +
Preference number: 2 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLALSAI*IQDIEL
Trigger: CAGTTCAATATCTTGGATCCATATAGCAGAAAGTGC...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTGTAGATGGTTTTGGATaGGTATGGGGTAGTACTTAC +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSAVDGFG*VWGSTY
Trigger: GTAAGTACTACCCCATACCCATCCAAAACCATCTAC...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTATAACTCCATCATCCTaGAGGAAAGTCAGATTAGAA +
Preference number: 2 (lower is better)
Translates to: PPSHLACPTTSSNKNALFITPSS*RKVRLE
Trigger: TTCTAATCTGACTTTCCTTCAGGATGATGGAGTTAT...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTTCATCTTTCTACCCTTaGCTACTAGGTGCTATGATT +
Preference number: 2 (lower is better)
Translates to: REHTRTVMRIIEQLALSASSFYP*LLGAMI
Trigger: AATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGA...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGTAGATGGTTTTGGATaGGTATGGGGTAGTACTTAC +
Preference number: 2 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCVDGFG*VWGSTY
Trigger: GTAAGTACTACCCCATACCCATCCAAAACCATCTAC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTATAACTCCATCATCCTaGAGGAAAGTCAGATTAGAA +
Preference number: 2 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCITPSS*RKVRLE
Trigger: TTCTAATCTGACTTTCCTTCAGGATGATGGAGTTAT...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR CCA 72 bp CAGTATGGAGTTTCCGGGAGCACCACCGCACCGGTGTaGAGTTTCCGGGAGCACCACTGCACCGGTGTGGCT +
Preference number: 3 (lower is better)
Translates to: QYGVSGSTTAPV*SFREHHCTGVA
Trigger: AGCCACACCGGTGCAGTGGTGCTCCCGGAAACTCCACACCGGTGCGGTGGTGCTCCCGGAAACTCCATACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR CCA 72 bp GCCAAGTGTGCTAAAACCAAGCACTGGAGAGACAGCTaGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCC +
Preference number: 3 (lower is better)
Translates to: AKCAKTKHWRDS*RRITSSRPAHA
Trigger: GGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTCTCCAGTGCTTGGTTTTAGCACACTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR CCA 72 bp CGGTGTGGAGTTTCCGGGAGCACCACTGCACCGGTGTaGCTGCTGTGTACTCTGAAATTAACAAGCTACACC +
Preference number: 3 (lower is better)
Translates to: RCGVSGSTTAPV*LLCTLKLTSYT
Trigger: GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCTCCCGGAAACTCCACACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGGCTGCCATGTGGGTGTaGAGACCTGAACCTGGGTCT +
Preference number: 3 (lower is better)
Translates to: GVAAVYSEINKLHLGDETAAMWV*RPEPGS
Trigger: AGACCCAGGTTCAGGTCTCAACACCCACATGGCAGC...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR GCA 72 bp AAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATaGTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTAT +
Preference number: 3 (lower is better)
Translates to: KLPSQHSRVLLT*SSLRGVSSAGY
Trigger: ATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAATCATCTTTCTACCCTaGCCTACTAGGTGCTATGAT +
Preference number: 3 (lower is better)
Translates to: ARELREHYCTSMEFPGAPIIFLP*PTRCYD
Trigger: ATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGAT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR GCA 72 bp CAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATaGCCCACAGTGACTTTCTCAAAAGTAGGAAGAAAT +
Preference number: 3 (lower is better)
Translates to: QLEEDHKFKASP*PTVTFSKVGRN
Trigger: ATTTCTTCCTACTTTTGAGAAAGTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 72 bp GGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTaGGACCTGAACCTGGGTCTTCAAAAAGAGCAGCAG +
Preference number: 3 (lower is better)
Translates to: GITDNCKLPCGC*DLNLGLQKEQQ
Trigger: CTGCTGCTCTTTTTGAAGACCCAGGTTCAGGTCTCAACACCCACATGGCAGCTTACAGTTGTCTGTAATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 72 bp AGGCCGGAAGAAGTGCTGGTGACAGGGATTCCAGTGTaGTGTTCTAGTTCCTCCTGCTGTAATTGCTCTTTT +
Preference number: 3 (lower is better)
Translates to: RPEEVLVTGIPV*CSSSSCCNCSF
Trigger: AAAAGAGCAATTACAGCAGGAGGAACTAGAACATCACACTGGAATCCCTGTCACCAGCACTTCTTCCGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCATCATCTTTCTACCCTaGCCTACTAGGTGCTATGAT +
Preference number: 3 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTIIFLP*PTRCYD
Trigger: ATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGAT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR GCA 72 bp GCCAAACTGGCTTCAAATTCATCATCTTTCTACCCTTaGCTACTAGGTGCTATGATTACAGGCATGCACCAC +
Preference number: 3 (lower is better)
Translates to: AKLASNSSSFYP*LLGAMITGMHH
Trigger: GTGGTGCATGCCTGTAATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGATGAATTTGAAGCCAGTTTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 72 bp ATATGGATCCAAGATATTGAACTGAGTGATCAGGTTTaGAAGCAAGACTCACATCCACCAAGTCACCTCGCC +
Preference number: 3 (lower is better)
Translates to: IWIQDIELSDQV*KQDSHPPSHLA
Trigger: GGCGAGGTGACTTGGTGGATGTGAGTCTTGCTTTCAAACCTGATCACTCAGTTCAATATCTTGGATCCATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR TCA 72 bp TTGCACTTTCTGCTATATGGATCCAAGATATTGAACTaGGTGATCAGGTTTGAAAGCAAGACTCACATCCAC +
Preference number: 3 (lower is better)
Translates to: LHFLLYGSKILN*VIRFESKTHIH
Trigger: GTGGATGTGAGTCTTGCTTTCAAACCTGATCACTCAGTTCAATATCTTGGATCCATATAGCAGAAAGTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACCTAGCTTCTCAGCATTaGCTGCAGTGGGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDLASQH*LQWARA
Trigger: TGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAG...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACACGACCTCGAGATGCTaGGCGTTTTCGGTAGTGGCG +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDTTSRC*AFSVVA
Trigger: CGCCACTACCGAAAACGCTCAGCATCTCGAGGTCGT...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACCCTGTGAGGGCCGTTTaGAGGTCAACTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDPVRAV*RSTSSS
Trigger: GGAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGG...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACTCCGGTCTCTGTCTCTaGTCCGAGAGCGTCTGTCAT +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDSGLCL*SESVCH
Trigger: ATGACAGACGCTCTCGGAGCAGAGACAGAGACCGGA...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAAACTTCCTCCTCCTCTaGGGAATACTCCATGGCGTC +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPNFLLL*GILHGV
Trigger: GACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACCAGTCTTCTTGGTTTTaGTGCCAGGACTGGAGGACC +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDQSSWF*CQDWRT
Trigger: GGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTG...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACTACTCGCTGATCCTCTaGAGGGCTTCCTTTGAGGTG +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDYSLIL*RASFEV
Trigger: CACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTA...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCACTCCTGCCTCCAACCTaGACTTCAATAGGTTTGCTC +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPLLPPT*TSIGLL
Trigger: GAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAG...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACCTCAGCAAGCTGCTCTaGAATGGTTTTCGCAGACAC +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDLSKLL*NGFRRH
Trigger: GTGTCTGCGAAAACCATTGCAGAGCAGCTTGCTGAG...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCCTTCCTTGGGCTCCTTaGCGGGAGGGAAGTAGGTGC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTLPWAP*REGSRC
Trigger: GCACCTACTTCCCTCCCGGCAAGGAGCCCAAGGAAG...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACCTGAGGAATACTCCATaGCGTCCTGGTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDLRNTP*RPGHSP
Trigger: TGGAGAATGACCAGGACGCCATGGAGTATTCCTCAG...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCCTGTGAGGGCCGTTTaGAGGTCAACTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETPVRAV*RSTSSS
Trigger: GGAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCATATCCACAATGCGCATaGCCTGTGGTTCAAAACCCA +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPYPQCA*PVVQNP
Trigger: TGGGTTTTGAACCACAGGTCATGCGCATTGTGGATA...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCACTTCAGAAGACCATCTaGGTGTTCCTGCTTATCCAC +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPLQKTI*VFLLIH
Trigger: GTGGATAAGCAGGAACACGCAGATGGTCTTCTGAAG...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCAGGCATAACCCTTGTTaGCCGCTCTTCCAGTCCGCC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTRHNPC*PLFQSA
Trigger: GGCGGACTGGAAGAGCGGGCAACAAGGGTTATGCCT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCTAGCTTCTCAGCATTaGCTGCAGTGGGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCLASQH*LQWARA
Trigger: TGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAG...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCGCGCTTCCTGTCCCTTaGCCGAGATCTTCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTALPVP*PRSSLV
Trigger: GACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGC...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCCTGTGAGGGCCGTTTaGAGGTCAACTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSPVRAV*RSTSSS
Trigger: GGAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGGGGCTTCCTTTGAGGTaGCTTTCCACCTCGCAGTCT +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETGLPLR*LSTSQS
Trigger: AGACTGCGAGGTGGAAAGTCACCTCAAAGGAAGCCC...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACGTTGGTTGGTTGGTATaGATTTTGCAGTCGGATCAG +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDVGWLV*ILQSDQ
Trigger: CTGATCCGACTGCAAAATTCATACCAACCAACCAAC...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCTTCTTGGTTTTGCTaGCAGGACTGGAGGACCGGG +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSSWFC*QDWRTG
Trigger: CCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAATAGCCTTCTTACGCTaGTCTTCGCGCCATTTTTCA +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPIAFLR*SSRHFS
Trigger: TGAAAAATGGCGCGAAGAGCAGCGTAAGAAGGCTAT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACTTCCTGTCTTGGCAATaGCAATCAAATCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDFLSWQ*QSNLVQ
Trigger: CTGGACGAGATTTGATTGGCATTGCCAAGACAGGAA...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCAGGCATAACCCTTGTTaGCCGCTCTTCCAGTCCGCC +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCRHNPC*PLFQSA
Trigger: GGCGGACTGGAAGAGCGGGCAACAAGGGTTATGCCT...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCGCTGGATGTGCCGGGTaGAGCCATGTCCTTTACTCT +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTAGCAG*SHVLYS
Trigger: AGAGTAAAGGACATGGCTGCACCCGGCACATCCAGC...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAATCTTCTCAGCAAGCTaGTCTGCAATGGTTTTCGCA +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPIFSAS*SAMVFA
Trigger: TGCGAAAACCATTGCAGAGCAGCTTGCTGAGAAGAT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACACTTCCTTGGGCTCCTTaGCGGGAGGGAAGTAGGTGC +
Preference number: 4 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTLPWAP*REGSRC
Trigger: GCACCTACTTCCCTCCCGGCAAGGAGCCCAAGGAAG...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGCCAGGTAGATCTTaGGCTCTCCTTCCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTWPGRS*ALLPWA
Trigger: AGCCCAAGGAAGGAGAGCGCAAGATCTACCTGGCCA...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTGGCCAGGTAGATCTTaGGCTCTCCTTCCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETWPGRS*ALLPWA
Trigger: AGCCCAAGGAAGGAGAGCGCAAGATCTACCTGGCCA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGACGACCTCGAGATGCTaGGCGTTTTCGGTAGTGGCG +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLTTSRC*AFSVVA
Trigger: CGCCACTACCGAAAACGCTCAGCATCTCGAGGTCGT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTGCAGGGCTTCCTTTaGGGTGACTTTCCACCTCGC +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLLQGFL*GDFPPR
Trigger: GCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCAG...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCAGCGCCTTCTATCTCTaGTCCGAGATCTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTSAFYL*SEIFSA
Trigger: AGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTATCGAGACCACGAGCTaGAACAGATGTGGCAACGAG +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPIETTS*NRCGNE
Trigger: CTCGTTGCCACATCTGTTGCAGCTCGTGGTCTCGAT...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCTACCTGAGACTCGATaGCCAGGTTCTTCTGAGCGT +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETLPETR*PGSSER
Trigger: ACGCTCAGAAGAACCTGGGCATCGAGTCTCAGGTAG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTCTGCCTTTGCTTTCTaGACAGCCAGCTCGTTGGCA +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETSAFAF*TASSLA
Trigger: TGCCAACGAGCTGGCTGTGCAGAAAGCAAAGGCAGA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCGAGCCTGGTGATCTCTaGCTTTGCTTTCTGCACAGC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTEPGDL*LCFLHS
Trigger: GCTGTGCAGAAAGCAAAGGCAGAGATCACCAGGCTC...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGAACTTCCTCCTCCTCTaGGGAATACTCCATGGCGTC +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLNFLLL*GILHGV
Trigger: GACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTT...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATCTTCTTGGTTTTGCTaGCAGGACTGGAGGACCGGG +
Preference number: 4 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTSSWFC*QDWRTG
Trigger: CCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGA...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCTCCACTTCTTCCCCTaGTTCATCTCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETLHFFP*FISSIS
Trigger: GGAGATTGAGGAGATGAAGCAGGGGAAGAAGTGGAG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTCTCCACTTCTTCCCCTaGTTCATCTCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPLHFFP*FISSIS
Trigger: GGAGATTGAGGAGATGAAGCAGGGGAAGAAGTGGAG...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTCTCCTGCCTCCAACCTaGACTTCAATAGGTTTGCTC +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPLLPPT*TSIGLL
Trigger: GAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAG...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTCTCCGTGAAGAGACATaGAAGGGTACGATGCTCTCA +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPLREET*KGTMLS
Trigger: TGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAG...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCATCGAGACCACGAGCTaGAACAGATGTGGCAACGAG +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCIETTS*NRCGNE
Trigger: CTCGTTGCCACATCTGTTGCAGCTCGTGGTCTCGAT...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCATCGAGACCACGAGCTaGAACAGATGTGGCAACGAG +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSIETTS*NRCGNE
Trigger: CTCGTTGCCACATCTGTTGCAGCTCGTGGTCTCGAT...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCATTCATCAATATCAACTaGAGCATCCTCGTCATCAGA +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPFININ*SILVIR
Trigger: TCTGATGACGAGGATGCTGCAGTTGATATTGATGAA...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGACTAGCTTCTCAGCATTaGCTGCAGTGGGCGCGGGCA +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGLASQH*LQWARA
Trigger: TGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAG...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCTACCTGAGACTCGATaGCCAGGTTCTTCTGAGCGT +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSLPETR*PGSSER
Trigger: ACGCTCAGAAGAACCTGGGCATCGAGTCTCAGGTAG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTACTCGCTGATCCTCTaGAGGGCTTCCTTTGAGGTG +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCYSLIL*RASFEV
Trigger: CACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGGAGCCTGGTGATCTCTaGCTTTGCTTTCTGCACAGC +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLEPGDL*LCFLHS
Trigger: GCTGTGCAGAAAGCAAAGGCAGAGATCACCAGGCTC...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCCTTTTTCTTCTCCTTaGAGCTGTCCCCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETPFSSP*SCPHLL
Trigger: CAGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAAACTTTTGTGACTGTTaGCCCAGACTTCTTCTCATT +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPNFCDC*PRLLLI
Trigger: AATGAGAAGAAGTCTGGGCCAACAGTCACAAAAGTT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAAGTTTGGATTGGTGTTaGCTTTTCATAGCCATGCTT +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPSLDWC*LFIAML
Trigger: AAGCATGGCTATGAAAAGCCAACACCAATCCAAACT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACAGTTTGGATTGGTGTTaGCTTTTCATAGCCATGCTT +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDSLDWC*LFIAML
Trigger: AAGCATGGCTATGAAAAGCCAACACCAATCCAAACT...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTCCACACTGGACCCATaGTTTAATTGGTTTCGGGCA +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETSTLDP*FNWFRA
Trigger: TGCCCGAAACCAATTAAATCATGGGTCCAGTGTGGA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGATAGCAGGAATCGCTTaGGTTTGGATTGGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETIAGIA*VWIGVG
Trigger: GCCAACACCAATCCAAACTCAAGCGATTCCTGCTAT...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGACTGCAGGGCTTCCTTTaGGGTGACTTTCCACCTCGC +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGLQGFL*GDFPPR
Trigger: GCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCAG...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTATCCACAATGCGCATaGCCTGTGGTTCAAAACCCA +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETYPQCA*PVVQNP
Trigger: TGGGTTTTGAACCACAGGTCATGCGCATTGTGGATA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTGTCATCCCCACGTTTaGTTCTTTTGTCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETCHPHV*FFCQRV
Trigger: CACCCTCTGACAAAAGAAGCAAACGTGGGGATGACA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGAGCGCCTTCTATCTCTaGTCCGAGATCTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSAFYL*SEIFSA
Trigger: AGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCGCTGTCCCCACCTTCTaGTTTCTCTTTGGACCTAGA +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCAVPTF*FLFGPR
Trigger: TCTAGGTCCAAAGAGAAAGCAGAAGGTGGGGACAGC...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGGCTGTCCCCACCTTCTaGTTTCTCTTTGGACCTAGA +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLAVPTF*FLFGPR
Trigger: TCTAGGTCCAAAGAGAAAGCAGAAGGTGGGGACAGC...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGCTCCACTTCTTCCCCTaGTTCATCTCCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLLHFFP*FISSIS
Trigger: GGAGATTGAGGAGATGAAGCAGGGGAAGAAGTGGAG...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCCTTCAGAAGACCATCTaGGTGTTCCTGCTTATCCAC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTLQKTI*VFLLIH
Trigger: GTGGATAAGCAGGAACACGCAGATGGTCTTCTGAAG...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCTCCGTGAAGAGACATaGAAGGGTACGATGCTCTCA +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSLREET*KGTMLS
Trigger: TGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTCGTCATCAGAATCTTaGAGGCCAAGAGCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETSSSES*RPRAAF
Trigger: GAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTGCTGGATGTGCCGGGTaGAGCCATGTCCTTTACTCT +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFAGCAG*SHVLYS
Trigger: AGAGTAAAGGACATGGCTGCACCCGGCACATCCAGC...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTACCTGAGACTCGATaGCCAGGTTCTTCTGAGCGT +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLLPETR*PGSSER
Trigger: ACGCTCAGAAGAACCTGGGCATCGAGTCTCAGGTAG...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTACTCGCTGATCCTCTaGAGGGCTTCCTTTGAGGTG +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLYSLIL*RASFEV
Trigger: CACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGGAGCCTGGTGATCTCTaGCTTTGCTTTCTGCACAGC +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLEPGDL*LCFLHS
Trigger: GCTGTGCAGAAAGCAAAGGCAGAGATCACCAGGCTC...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTGTTCTCAGTCTTCTTaGTTTTGCTGCCAGGACTGG +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPCSQSS*FCCQDW
Trigger: CCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCCTTTTTCTTCTCCTTaGAGCTGTCCCCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSPFSSP*SCPHLL
Trigger: CAGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTACTCCATGGCGTCCTaGTCATTCTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCYSMAS*SFSMSS
Trigger: GGAACTCATGGAGAATGACCAGGACGCCATGGAGTA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAAATTTAGTATCTTCATaGAAATTCCACACTGGACCC +
Preference number: 4 (lower is better)
Translates to: ARELREHYCTSMEFPGAPNLVSS*KFHTGP
Trigger: GGGTCCAGTGTGGAATTTCCATGAAGATACTAAATT...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTCCACACTGGACCCATaGTTTAATTGGTTTCGGGCA +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCSTLDP*FNWFRA
Trigger: TGCCCGAAACCAATTAAATCATGGGTCCAGTGTGGA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGAGGCACTGCGGTCCCTaGCAATTCAAGAGCTTTAAT +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLRHCGP*QFKSFN
Trigger: ATTAAAGCTCTTGAATTGTCAGGGACCGCAGTGCCT...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGATCCGGTCTCTGTCTCTaGTCCGAGAGCGTCTGTCAT +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGSGLCL*SESVCH
Trigger: ATGACAGACGCTCTCGGAGCAGAGACAGAGACCGGA...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCATAGCCTTCTTACGCTaGTCTTCGCGCCATTTTTCA +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTIAFLR*SSRHFS
Trigger: TGAAAAATGGCGCGAAGAGCAGCGTAAGAAGGCTAT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTTCCTGTCTTGGCAATaGCAATCAAATCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPFLSWQ*QSNLVQ
Trigger: CTGGACGAGATTTGATTGGCATTGCCAAGACAGGAA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGAGCAAACCACACTCCTaGCTCCAACCTGCACTTCAA +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSKPHS*LQPALQ
Trigger: TTGAAGTGCAGGTTGGAGGCAGGAGTGTGGTTTGCT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAGCTGGATGTGCCGGGTaGAGCCATGTCCTTTACTCT +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGAGCAG*SHVLYS
Trigger: AGAGTAAAGGACATGGCTGCACCCGGCACATCCAGC...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTCAGCAAGCTGCTCTaGAATGGTTTTCGCAGACAC +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLLSKLL*NGFRRH
Trigger: GTGTCTGCGAAAACCATTGCAGAGCAGCTTGCTGAG...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTATCTTCTCAGCAAGCTaGTCTGCAATGGTTTTCGCA +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPIFSAS*SAMVFA
Trigger: TGCGAAAACCATTGCAGAGCAGCTTGCTGAGAAGAT...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTTCTGCCTTTGCTTTCTaGACAGCCAGCTCGTTGGCA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFSAFAF*TASSLA
Trigger: TGCCAACGAGCTGGCTGTGCAGAAAGCAAAGGCAGA...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTGTTCTCAGTCTTCTTaGTTTTGCTGCCAGGACTGG +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCCSQSS*FCCQDW
Trigger: CCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACACTGAGGAATACTCCATaGCGTCCTGGTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTLRNTP*RPGHSP
Trigger: TGGAGAATGACCAGGACGCCATGGAGTATTCCTCAG...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACTGTATCGTCCTTTGTTaGTTGGTTGGTATGAATTTT +
Preference number: 4 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDCIVLC*LVGMNF
Trigger: AAAATTCATACCAACCAACCAACAAAGGACGATACA...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTACGACCTCGAGATGCTaGGCGTTTTCGGTAGTGGCG +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCTTSRC*AFSVVA
Trigger: CGCCACTACCGAAAACGCTCAGCATCTCGAGGTCGT...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAAACTTCCTCCTCCTCTaGGGAATACTCCATGGCGTC +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGNFLLL*GILHGV
Trigger: GACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTT...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCATAATAAAATACCCGTaGCTTACCACTGTTAGCCGC +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTIIKYP*LTTVSR
Trigger: GCGGCTAACAGTGGTAAGTCACGGGTATTTTATTAT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099479.4
CDS-3UTR TCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCCTTCAGCTTTCTGTTaGTCTTTGAAGTCACTCCAG +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCPSAFC*SLKSLQ
Trigger: CTGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGG...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCGTTGGTTGGTTGGTATaGATTTTGCAGTCGGATCAG +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSVGWLV*ILQSDQ
Trigger: CTGATCCGACTGCAAAATTCATACCAACCAACCAAC...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGTCATCCCCACGTTTaGTTCTTTTGTCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTCHPHV*FFCQRV
Trigger: CACCCTCTGACAAAAGAAGCAAACGTGGGGATGACA...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTCAGTCTTCTTGGTTTTaGTGCCAGGACTGGAGGACC +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSAQSSWF*CQDWRT
Trigger: GGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTG...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCATAGCCTTCTTACGCTaGTCTTCGCGCCATTTTTCA +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSIAFLR*SSRHFS
Trigger: TGAAAAATGGCGCGAAGAGCAGCGTAAGAAGGCTAT...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTTCCTGTCTTGGCAATaGCAATCAAATCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCFLSWQ*QSNLVQ
Trigger: CTGGACGAGATTTGATTGGCATTGCCAAGACAGGAA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCTCCTGCCTCCAACCTaGACTTCAATAGGTTTGCTC +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFLLPPT*TSIGLL
Trigger: GAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTAGCAAACCACACTCCTaGCTCCAACCTGCACTTCAA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFSKPHS*LQPALQ
Trigger: TTGAAGTGCAGGTTGGAGGCAGGAGTGTGGTTTGCT...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCTCCGTGAAGAGACATaGAAGGGTACGATGCTCTCA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFLREET*KGTMLS
Trigger: TGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCGTCATCAGAATCTTaGAGGCCAAGAGCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSSSES*RPRAAF
Trigger: GAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTTCTGCCTTTGCTTTCTaGACAGCCAGCTCGTTGGCA +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSASAFAF*TASSLA
Trigger: TGCCAACGAGCTGGCTGTGCAGAAAGCAAAGGCAGA...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTGGTTGGTATGAATTTTaGAGTCGGATCAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPGWYEF*SRISSS
Trigger: AGAGGAACTGATCCGACTGCAAAATTCATACCAACC...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCTGAGGAATACTCCATaGCGTCCTGGTCATTCTCCA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFLRNTP*RPGHSP
Trigger: TGGAGAATGACCAGGACGCCATGGAGTATTCCTCAG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCCCTTTGTTGGTTGGTTaGTATGAATTTTGCAGTCGG +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTPLLVG*YEFCSR
Trigger: CCGACTGCAAAATTCATACCAACCAACCAACAAAGG...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCAATGCGCATGACCTGTaGTTCAAAACCCATGTCAAA +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTNAHDL*FKTHVK
Trigger: TTTGACATGGGTTTTGAACCACAGGTCATGCGCATT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGCGCTTCCTGTCCCTTaGCCGAGATCTTCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCALPVP*PRSSLV
Trigger: GACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCTTCTAATGACCTCTaGTCCATGATGTGTCTAAAC +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSSNDL*SMMCLN
Trigger: GTTTAGACACATCATGGATCAGAGGTCATTAGAAGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCTAGGGAAAGTGGCTaGAAACATAACTGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSRESG*KHNCLS
Trigger: CGACAGACAGTTATGTTTTCAGCCACTTTCCCTAGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATCTAGGGAAAGTGGCTaGAAACATAACTGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTSRESG*KHNCLS
Trigger: CGACAGACAGTTATGTTTTCAGCCACTTTCCCTAGA...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCTTCTTGGTTTTGCTaGCAGGACTGGAGGACCGGG +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSSWFC*QDWRTG
Trigger: CCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCCATCTGCGTGTTCCTaGTTATCCACAAATATAATG +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETPSACS*LSTNIM
Trigger: CATTATATTTGTGGATAAGCAGGAACACGCAGATGG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTCCATCTGCGTGTTCCTaGTTATCCACAAATATAATG +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPPSACS*LSTNIM
Trigger: CATTATATTTGTGGATAAGCAGGAACACGCAGATGG...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGATCTTCTCAGCAAGCTaGTCTGCAATGGTTTTCGCA +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLIFSAS*SAMVFA
Trigger: TGCGAAAACCATTGCAGAGCAGCTTGCTGAGAAGAT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTGGCCAGGTAGATCTTaGGCTCTCCTTCCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCWPGRS*ALLPWA
Trigger: AGCCCAAGGAAGGAGAGCGCAAGATCTACCTGGCCA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGGGTTGGTATGAATTTTaGAGTCGGATCAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLGWYEF*SRISSS
Trigger: AGAGGAACTGATCCGACTGCAAAATTCATACCAACC...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCAACTTTTGTGACTGTTaGCCCAGACTTCTTCTCATT +
Preference number: 4 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTNFCDC*PRLLLI
Trigger: AATGAGAAGAAGTCTGGGCCAACAGTCACAAAAGTT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTAACTTTTGTGACTGTTaGCCCAGACTTCTTCTCATT +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPNFCDC*PRLLLI
Trigger: AATGAGAAGAAGTCTGGGCCAACAGTCACAAAAGTT...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTAGTTTGGATTGGTGTTaGCTTTTCATAGCCATGCTT +
Preference number: 4 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSLDWC*LFIAML
Trigger: AAGCATGGCTATGAAAAGCCAACACCAATCCAAACT...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTTCCACTTCCTGTCTTaGCAATGCCAATCAAATCTC +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCFHFLS*QCQSNL
Trigger: GAGATTTGATTGGCATTGCCAAGACAGGAAGTGGAA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TCTGGCTGGCCTGAAACTCACTATGTAAAACCAGATGCAGAGGACAACAGGCTGCCTTTGTTGGTTGGTTaGTATGAATTTTGCAGTCGG +
Preference number: 4 (lower is better)
Translates to: SGWPETHYVKPDAEDNRLPLLVG*YEFCSR
Trigger: CCGACTGCAAAATTCATACCAACCAACCAACAAAGG...CAGCCTGTTGTCCTCTGCATCTGGTTTTACATAGTGAGTTTCAGGCCAGCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGATCCACACTGGACCCATaGTTTAATTGGTTTCGGGCA +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGSTLDP*FNWFRA
Trigger: TGCCCGAAACCAATTAAATCATGGGTCCAGTGTGGA...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAAGGCACTGCGGTCCCTaGCAATTCAAGAGCTTTAAT +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGRHCGP*QFKSFN
Trigger: ATTAAAGCTCTTGAATTGTCAGGGACCGCAGTGCCT...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCCTTCAGCTTTCTGTTaGTCTTTGAAGTCACTCCAG +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFPSAFC*SLKSLQ
Trigger: CTGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGATGTCATCCCCACGTTTaGTTCTTTTGTCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGCHPHV*FFCQRV
Trigger: CACCCTCTGACAAAAGAAGCAAACGTGGGGATGACA...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTCAGTCTTCTTGGTTTTaGTGCCAGGACTGGAGGACC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCQSSWF*CQDWRT
Trigger: GGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTG...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGACTTCAGAAGACCATCTaGGTGTTCCTGCTTATCCAC +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGLQKTI*VFLLIH
Trigger: GTGGATAAGCAGGAACACGCAGATGGTCTTCTGAAG...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCTTCATCAATATCAACTaGAGCATCCTCGTCATCAGA +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCFININ*SILVIR
Trigger: TCTGATGACGAGGATGCTGCAGTTGATATTGATGAA...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTTCCACTTCCTGTCTTaGCAATGCCAATCAAATCTC +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLFHFLS*QCQSNL
Trigger: GAGATTTGATTGGCATTGCCAAGACAGGAAGTGGAA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
3UTR CAA 72 bp GGCCAAACTGGCTTCAAATTCATCATCTTTCTACCCTaGCCTACTAGGTGCTATGATTACAGGCATGCACCA +
Preference number: 4 (lower is better)
Translates to: GQTGFKFIIFLP*PTRCYDYRHAP
Trigger: TGGTGCATGCCTGTAATCATAGCACCTAGTAGGCAAGGGTAGAAAGATGATGAATTTGAAGCCAGTTTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCATAGCCATGCTTTTTaGGGGAATTTAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCHSHAF*GNLVSS
Trigger: TGAAGATACTAAATTCCCTCAAAAAGCATGGCTATG...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCATAGCCATGCTTTTTaGGGGAATTTAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSHSHAF*GNLVSS
Trigger: TGAAGATACTAAATTCCCTCAAAAAGCATGGCTATG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCCTTTCTGTTGATCTTTaGAGTCACTCCAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSLSVDL*SHSRVF
Trigger: AAAAACTCTGGAGTGACTTCAAAGATCAACAGAAAG...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTGTTGGTTGGTTGGTATaGATTTTGCAGTCGGATCAG +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSAVGWLV*ILQSDQ
Trigger: CTGATCCGACTGCAAAATTCATACCAACCAACCAAC...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGCTGTCCCCACCTTCTaGTTTCTCTTTGGACCTAGA +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCAVPTF*FLFGPR
Trigger: TCTAGGTCCAAAGAGAAAGCAGAAGGTGGGGACAGC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTTCAATCACAATCACCTaGTGTTCCACATCGGAGCAA +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSASITIT*CSTSEQ
Trigger: TTGCTCCGATGTGGAACAGCAGGTGATTGTGATTGA...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAAGGCATAACCCTTGTTaGCCGCTCTTCCAGTCCGCC +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVRHNPC*PLFQSA
Trigger: GGCGGACTGGAAGAGCGGGCAACAAGGGTTATGCCT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTCTCAGCAAGCTGCTCTaGAATGGTTTTCGCAGACAC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCLSKLL*NGFRRH
Trigger: GTGTCTGCGAAAACCATTGCAGAGCAGCTTGCTGAG...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTACTCCATGGCGTCCTaGTCATTCTCCATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCYSMAS*SFSMSS
Trigger: GGAACTCATGGAGAATGACCAGGACGCCATGGAGTA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCATGGAAATTCCACACTaGACCCATGATTTAATTGGT +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSMEIPH*THDLIG
Trigger: ACCAATTAAATCATGGGTCCAGTGTGGAATTTCCAT...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTGTATCGTCCTTTGTTaGTTGGTTGGTATGAATTTT +
Preference number: 4 (lower is better)
Translates to: GVAAVYSEINKLHLGDETCIVLC*LVGMNF
Trigger: AAAATTCATACCAACCAACCAACAAAGGACGATACA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAGGGCTTCCTTTGAGGTaGCTTTCCACCTCGCAGTCT +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVGLPLR*LSTSQS
Trigger: AGACTGCGAGGTGGAAAGTCACCTCAAAGGAAGCCC...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCGTCATCAGAATCTTaGAGGCCAAGAGCAGCTTTC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSSSES*RPRAAF
Trigger: GAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTTTCATCAATATCAACTaGAGCATCCTCGTCATCAGA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFFININ*SILVIR
Trigger: TCTGATGACGAGGATGCTGCAGTTGATATTGATGAA...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGATGGAAATTCCACACTaGACCCATGATTTAATTGGT +
Preference number: 4 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLMEIPH*THDLIG
Trigger: ACCAATTAAATCATGGGTCCAGTGTGGAATTTCCAT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCTGTATCGTCCTTTGTTaGTTGGTTGGTATGAATTTT +
Preference number: 4 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSCIVLC*LVGMNF
Trigger: AAAATTCATACCAACCAACCAACAAAGGACGATACA...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCTAGGGAAAGTGGCTaGAAACATAACTGTCTGTCG +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSRESG*KHNCLS
Trigger: CGACAGACAGTTATGTTTTCAGCCACTTTCCCTAGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTCCTTCAGCTTTCTGTTaGTCTTTGAAGTCACTCCAG +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCPSAFC*SLKSLQ
Trigger: CTGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGG...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCAATCACAATCACCTaGTGTTCCACATCGGAGCAA +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSITIT*CSTSEQ
Trigger: TTGCTCCGATGTGGAACAGCAGGTGATTGTGATTGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTCCATCTGCGTGTTCCTaGTTATCCACAAATATAATG +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSAPSACS*LSTNIM
Trigger: CATTATATTTGTGGATAAGCAGGAACACGCAGATGG...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTAATTTAGTATCTTCATaGAAATTCCACACTGGACCC +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFNLVSS*KFHTGP
Trigger: GGGTCCAGTGTGGAATTTCCATGAAGATACTAAATT...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTCTTTCTGTTGATCTTTaGAGTCACTCCAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: REHTRTVMRIIEQLALSALSVDL*SHSRVF
Trigger: AAAAACTCTGGAGTGACTTCAAAGATCAACAGAAAG...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAATGGAAATTCCACACTaGACCCATGATTTAATTGGT +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGMEIPH*THDLIG
Trigger: ACCAATTAAATCATGGGTCCAGTGTGGAATTTCCAT...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTAATCTTCATAATGATTaGGGCAGCTGTAATTCACTA +
Preference number: 4 (lower is better)
Translates to: PPSHLACPTTSSNKNALFNLHND*GSCNSL
Trigger: TAGTGAATTACAGCTGCCCCAATCATTATGAAGATT...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAATAGCAGGAATCGCTTaGGTTTGGATTGGTGTTGGC +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVIAGIA*VWIGVG
Trigger: GCCAACACCAATCCAAACTCAAGCGATTCCTGCTAT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCTTCTAATGACCTCTaGTCCATGATGTGTCTAAAC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSSNDL*SMMCLN
Trigger: GTTTAGACACATCATGGATCAGAGGTCATTAGAAGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTATCCACAATGCGCATaGCATCTGCTTCAACAAAAA +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCYPQCA*HLLQQK
Trigger: TTTTTGTTGAAGCAGATGTCATGCGCATTGTGGATA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099479.4
CDS-3UTR CCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTATGTTCTCAGTCTTCTTaGTTTTGCTGCCAGGACTGG +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVCSQSS*FCCQDW
Trigger: CCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACA...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAAATCTTCATAATGATTaGGGCAGCTGTAATTCACTA +
Preference number: 4 (lower is better)
Translates to: QGREKTLNSNTSTVERRGNLHND*GSCNSL
Trigger: TAGTGAATTACAGCTGCCCCAATCATTATGAAGATT...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTAATGCGCATGACATCTaGTTCAACAAAAATCATGTC +
Preference number: 4 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCNAHDI*FNKNHV
Trigger: GACATGATTTTTGTTGAAGCAGATGTCATGCGCATT...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099479.4
CDS-3UTR GCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTATCAATCACAATCACCTaGTGTTCCACATCGGAGCAA +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVSITIT*CSTSEQ
Trigger: TTGCTCCGATGTGGAACAGCAGGTGATTGTGATTGA...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR GCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAGGTTGGTATGAATTTTaGAGTCGGATCAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVGWYEF*SRISSS
Trigger: AGAGGAACTGATCCGACTGCAAAATTCATACCAACC...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAAATGCGCATGACCTGTaGTTCAAAACCCATGTCAAA +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVNAHDL*FKTHVK
Trigger: TTTGACATGGGTTTTGAACCACAGGTCATGCGCATT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTATCTTCTAATGACCTCTaGTCCATGATGTGTCTAAAC +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVSSNDL*SMMCLN
Trigger: GTTTAGACACATCATGGATCAGAGGTCATTAGAAGA...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR TCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTACTTTCTGTTGATCTTTaGAGTCACTCCAGAGTTTTT +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVLSVDL*SHSRVF
Trigger: AAAAACTCTGGAGTGACTTCAAAGATCAACAGAAAG...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAAATTTAGTATCTTCATaGAAATTCCACACTGGACCC +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVNLVSS*KFHTGP
Trigger: GGGTCCAGTGTGGAATTTCCATGAAGATACTAAATT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CCA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAAATCTTCATAATGATTaGGGCAGCTGTAATTCACTA +
Preference number: 4 (lower is better)
Translates to: NSIILKESQIRSIMVENVNLHND*GSCNSL
Trigger: TAGTGAATTACAGCTGCCCCAATCATTATGAAGATT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 90 bp GCCAGGACTGGAGGACCGGGACCGCCTGCCCCGGCTTCGACTCCTTaGGCGCCTTCTATCTCTGCTCCGAGATCTTCTCCGCTCTCGGCT +
Preference number: 5 (lower is better)
Translates to: ARTGGPGPPAPASTP*APSISAPRSSPLSA
Trigger: AGCCGAGAGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCAGTCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp GGGACCGCCTGCCCCGGCTTCGACTCCTTGAGCGCCTTCTATCTCTaGTCCGAGATCTTCTCCGCTCTCGGCTTCTGTCTCGCTCTCTAC +
Preference number: 5 (lower is better)
Translates to: GTACPGFDSLSAFYL*SEIFSALGFCLALY
Trigger: GTAGAGAGCGAGACAGAAGCCGAGAGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCAGGCGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp GTGCCCCTGATGGTGATGGCGGCCTCAGAGTACTCGCTGATCCTCTaGAGGGCTTCCTTTGAGGTGACTTTCCACCTCGCAGTCTGTGGG +
Preference number: 5 (lower is better)
Translates to: VPLMVMAASEYSLIL*RASFEVTFHLAVCG
Trigger: CCCACAGACTGCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTACTCTGAGGCCGCCATCACCATCAGGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp TCTGCACAGCCAGCTCGTTGGCACTTTCGATGGCCAGGTAGATCTTaGGCTCTCCTTCCTTGGGCTCCTTGCCGGGAGGGAAGTAGGTGC +
Preference number: 5 (lower is better)
Translates to: SAQPARWHFRWPGRS*ALLPWAPCREGSRC
Trigger: GCACCTACTTCCCTCCCGGCAAGGAGCCCAAGGAAGGAGAGCGCAAGATCTACCTGGCCATCGAAAGTGCCAACGAGCTGGCTGTGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 90 bp GAGCCAATCTCTTGGCGATTTCTAGCTTCTCAGCATTGCCTGCAGTaGGCGCGGGCACGCTGGATGTGCCGGGTGCAGCCATGTCCTTTA +
Preference number: 5 (lower is better)
Translates to: EPISWRFLASQHCLQ*ARARWMCRVQPCPL
Trigger: TAAAGGACATGGCTGCACCCGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGAGATTGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS TCA 90 bp GTCTCGCTCTCTACTTCTGGAGCGCCTCAGGCGCTTCCTGTCCCTTaGCCGAGATCTTCTCTTGTCCCTACTCCGAGACCTCTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: VSLSTSGAPQALPVP*PRSSLVPTPRPLSP
Trigger: AGGAGAGAGAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAGGCGCTCCAGAAGTAGAGAGCGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCATGCACTTCAATAGGTTaGCTCAGGATCCTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: ARELREHYCTSMEFPGAPCTSIG*LRILRA
Trigger: GGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCA...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp ACCTGCTGTTCCACATCGGAGCAAACCACACTCCTGCCTCCAACCTaGACTTCAATAGGTTTGCTCAGGATCCTGCGGGCCAAAGCCTCC +
Preference number: 5 (lower is better)
Translates to: TCCSTSEQTTLLPPT*TSIGLLRILRAKAS
Trigger: GGAGGCTTTGGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAGTGTGGTTTGCTCCGATGTGGAACAGCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCACCACGTTTGCTTCTTTaGTCAGAGGGTGAGCGACTC +
Preference number: 5 (lower is better)
Translates to: ARELREHYCTSMEFPGAPPRLLL*SEGERL
Trigger: GAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGG...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCTAGCTTCTCAGCATaGCCTGCAGTGGGCGCGGGC +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSSFSA*PAVGAG
Trigger: GCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 90 bp CTGGTAGCCTGTGAGGGCCGTTTGAAGGTCAACTTCCTCCTCCTCTaGGGAATACTCCATGGCGTCCTGGTCATTCTCCATGAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: LVACEGRLKVNFLLL*GILHGVLVILHEFP
Trigger: GGGGAACTCATGGAGAATGACCAGGACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGGCTACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp TCTTGTCCCTACTCCGAGACCTCTCTCTCCTCCGGTCTCTGTCTCTaGTCCGAGAGCGTCTGTCATCCCCACGTTTGCTTCTTTTGTCAG +
Preference number: 5 (lower is better)
Translates to: SCPYSETSLSSGLCL*SESVCHPHVCFFCQ
Trigger: CTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAGAGACCGGAGGAGAGAGAGGTCTCGGAGTAGGGACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 90 bp CGATTTCTAGCTTCTCAGCATTGCCTGCAGTGGGCGCGGGCACGCTaGATGTGCCGGGTGCAGCCATGTCCTTTACTCTCTTCTTTGAAT +
Preference number: 5 (lower is better)
Translates to: RFLASQHCLQWARAR*MCRVQPCPLLSSLN
Trigger: ATTCAAAGAAGAGAGTAAAGGACATGGCTGCACCCGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCATCCTTTTTCTTCTCCTaGGAGCTGTCCCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: ARELREHYCTSMEFPGAPSFFFS*ELSPPS
Trigger: AGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGGA...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCCTCTGAGGATGGCGTaGGTGGCCTGCTGCATCACA +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETPLRMA*VACCIT
Trigger: TGTGATGCAGCAGGCCACCAACGCCATCCTCAGAGG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCGCCTGTGAGGGCCGTTaGAAGGTCAACTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTACEGR*KVNFLL
Trigger: GAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGGC...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCTAGCTTCTCAGCATaGCCTGCAGTGGGCGCGGGC +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSSFSA*PAVGAG
Trigger: GCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 90 bp GATGGCGGCCTCAGAGTACTCGCTGATCCTCTGCAGGGCTTCCTTTaGGGTGACTTTCCACCTCGCAGTCTGTGGGAAGTCATTAATTTC +
Preference number: 5 (lower is better)
Translates to: DGGLRVLADPLQGFL*GDFPPRSLWEVINF
Trigger: GAAATTAATGACTTCCCACAGACTGCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTACTCTGAGGCCGCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp AGGCACGTAGTTGAGCTTGGCATTGATCTTCTCAGCAAGCTGCTCTaGAATGGTTTTCGCAGACACAGTGGGAGCCAGGATAGTGCCACC +
Preference number: 5 (lower is better)
Translates to: RHVVELGIDLLSKLL*NGFRRHSGSQDSAT
Trigger: GGTGGCACTATCCTGGCTCCCACTGTGTCTGCGAAAACCATTGCAGAGCAGCTTGCTGAGAAGATCAATGCCAAGCTCAACTACGTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCAGAGTTTGGATTGGTGTaGGCTTTTCATAGCCATGCT +
Preference number: 5 (lower is better)
Translates to: ARELREHYCTSMEFPGAPEFGLV*AFHSHA
Trigger: AGCATGGCTATGAAAAGCCAACACCAATCCAAACTC...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACAGGAATCGCTTGAGTTaGGATTGGTGTTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDRNRLS*DWCWLF
Trigger: GAAAAGCCAACACCAATCCAAACTCAAGCGATTCCT...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTGAGGGAGCACTACTGCACCAGTATGGAGTTTCCGGGAGCACCATATAGCAGGAATCGCTaGAGTTTGGATTGGTGTTGG +
Preference number: 5 (lower is better)
Translates to: ARELREHYCTSMEFPGAPYSRNR*SLDWCW
Trigger: CCAACACCAATCCAAACTCAAGCGATTCCTGCTATA...TGGTGCTCCCGGAAACTCCATACTGGTGCAGTAGTGCTCCCTCAACTCCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTGCACTTCAATAGGTTaGCTCAGGATCCTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETCTSIG*LRILRA
Trigger: GGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTGCACTTCAATAGGTTaGCTCAGGATCCTGCGGGCC +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPCTSIG*LRILRA
Trigger: GGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCTCTGAGGATGGCGTaGGTGGCCTGCTGCATCACA +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLPLRMA*VACCIT
Trigger: TGTGATGCAGCAGGCCACCAACGCCATCCTCAGAGG...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCGACCGAGATCTTCTCTaGTCCCTACTCCGAGACCTC +
Preference number: 5 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSDRDLL*SLLRDL
Trigger: GAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTC...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTCAGTCTTCTTGGTTTaGCTGCCAGGACTGGAGGAC +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETSVFLV*LPGLED
Trigger: GTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCAGTCTTCTTGGTTTaGCTGCCAGGACTGGAGGAC +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSVFLV*LPGLED
Trigger: GTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GAGACAGCTGGAGGAGGATCACAAGTTCAAGGCCAGCCCATGCCCCACAGTGACTCTGTTTCATCAAACTaGAATCCCTTGCCAGAGAAG +
Preference number: 5 (lower is better)
Translates to: ETAGGGSQVQGQPMPHSDSVSSN*NPLPEK
Trigger: CTTCTCTGGCAAGGGATTCAAGTTTGATGAAACAGA...GTCACTGTGGGGCATGGGCTGGCCTTGAACTTGTGATCCTCCTCCAGCTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGATCTAGCTTCTCAGCATaGCCTGCAGTGGGCGCGGGC +
Preference number: 5 (lower is better)
Translates to: QGREKTLNSNTSTVERRGSSFSA*PAVGAG
Trigger: GCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGA...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCCTCTGAGGATGGCGTaGGTGGCCTGCTGCATCACA +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFPLRMA*VACCIT
Trigger: TGTGATGCAGCAGGCCACCAACGCCATCCTCAGAGG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 90 bp TACTGCTTTCTTGGTGGTCACCACAGTGACAACTTTTGTGACTGTTaGCCCAGACTTCTTCTCATTTCCTGCGCCGCCTTTCACGCTCCT +
Preference number: 5 (lower is better)
Translates to: YCFLGGHHSDNFCDC*PRLLLISCAAFHAP
Trigger: AGGAGCGTGAAAGGCGGCGCAGGAAATGAGAAGAAGTCTGGGCCAACAGTCACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTCTGTCATCCCCACGTTaGCTTCTTTTGTCAGAGGGT +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPLSSPR*LLLSEG
Trigger: ACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAG...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACAGGCGCTTCCTGTCCCTaGACCGAGATCTTCTCTTGT +
Preference number: 5 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTGASCP*TEIFSC
Trigger: ACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCC...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTCCTTTTTCTTCTCCTaGGAGCTGTCCCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETSFFFS*ELSPPS
Trigger: AGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGGA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCTGTCATCCCCACGTTaGCTTCTTTTGTCAGAGGGT +
Preference number: 5 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCLSSPR*LLLSEG
Trigger: ACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAG...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCAGTCTTCTTGGTTTaGCTGCCAGGACTGGAGGAC +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSVFLV*LPGLED
Trigger: GTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGCCTTCTGCTTTCTCTTaGGACCTAGACCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETPSAFS*DLDLFS
Trigger: TGAGAACAGGTCTAGGTCCAAAGAGAAAGCAGAAGG...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCGTGGCAACGAGGAGCTaGCAGGTTCCATTCTTAAAG +
Preference number: 5 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCVATRS*QVPFLK
Trigger: CTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCAC...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCCTGAGAGCCAATCTCTaGGCGATTTCTAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTLRANL*AISSFS
Trigger: TGAGAAGCTAGAAATCGCCAAGAGATTGGCTCTCAG...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCCTTCTGCTTTCTCTTaGGACCTAGACCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCPSAFS*DLDLFS
Trigger: TGAGAACAGGTCTAGGTCCAAAGAGAAAGCAGAAGG...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCTTTCTCGTCCTCCTaGTCATCCTTGTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSFSSS*SSLSFF
Trigger: GAAAAAGGACAAGGATGACAAGGAGGACGAGAAAGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TGCTCCAGTCTGCGAGGTGTAAGCTCAGCAGGCTATGACCAGAGCTTTTTACCTTCGCTTGAGTTTGGATaGGTGTTGGCTTTTCATAGC +
Preference number: 5 (lower is better)
Translates to: CSSLRGVSSAGYDQSFLPSLEFG*VLAFHS
Trigger: GCTATGAAAAGCCAACACCAATCCAAACTCAAGCGA...AGGTAAAAAGCTCTGGTCATAGCCTGCTGAGCTTACACCTCGCAGACTGGAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTATAGCAGGAATCGCTaGAGTTTGGATTGGTGTTGG +
Preference number: 5 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTYSRNR*SLDWCW
Trigger: CCAACACCAATCCAAACTCAAGCGATTCCTGCTATA...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCACCAGCATATCGAGCTaGATCCTCTGTGATGAAGGT +
Preference number: 5 (lower is better)
Translates to: FVNFHHSTLGSCSHAPVCTSISS*ILCDEG
Trigger: ACCTTCATCACAGAGGATCAAGCTCGATATGCTGGT...GCAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp GTCATTCTCCATGAGTTCCCCCTTCTTCTTATCCGCGTCTACTACTaGTTTCTTGGTGGTCACCACAGTGACAACTTTTGTGACTGTTGG +
Preference number: 5 (lower is better)
Translates to: VILHEFPLLLIRVYY*FLGGHHSDNFCDCW
Trigger: CCAACAGTCACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTAGTAGACGCGGATAAGAAGAAGGGGGAACTCATGGAGAATGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp GCAGCATCCTCGTCATCAGAATCTTGCAGGCCAAGAGCAGCTTTCTaGAGCTTTTTCCTCTCATTGGCTAAAGCCTGTTCTGTTTCATCA +
Preference number: 5 (lower is better)
Translates to: AASSSSESCRPRAAF*SFFLSLAKACSVSS
Trigger: TGATGAAACAGAACAGGCTTTAGCCAATGAGAGGAAAAAGCTGCAGAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGAGGATGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGCCTTCTGCTTTCTCTTaGGACCTAGACCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLPSAFS*DLDLFS
Trigger: TGAGAACAGGTCTAGGTCCAAAGAGAAAGCAGAAGG...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGCCTGTGAGGGCCGTTaGAAGGTCAACTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCACEGR*KVNFLL
Trigger: GAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGGC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGTTTCCACTTCCTGTCTaGGCAATGCCAATCAAATCT +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETFPLPV*AMPIKS
Trigger: AGATTTGATTGGCATTGCCAAGACAGGAAGTGGAAA...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGACCAGCATATCGAGCTaGATCCTCTGTGATGAAGGT +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLTSISS*ILCDEG
Trigger: ACCTTCATCACAGAGGATCAAGCTCGATATGCTGGT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTCCTTCAGCTTTCTGTaGATCTTTGAAGTCACTCCA +
Preference number: 5 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTSFSFL*IFEVTP
Trigger: TGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGGA...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 90 bp GTCATATTGATCAATACCTCCGTGAAGAGACATGCAAGGGTACGATaGTCTCATCAAGTCCTTCAGAAGACCATCTGCGTGTTCCTGCTT +
Preference number: 5 (lower is better)
Translates to: VILINTSVKRHARVR*SHQVLQKTICVFLL
Trigger: AAGCAGGAACACGCAGATGGTCTTCTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAGGTATTGATCAATATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGACCGAGATCTTCTCTaGTCCCTACTCCGAGACCTC +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCDRDLL*SLLRDL
Trigger: GAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGGCGCTTCCTGTCCCTaGACCGAGATCTTCTCTTGT +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCGASCP*TEIFSC
Trigger: ACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTTCCTTTTTCTTCTCCTaGGAGCTGTCCCCACCTTCT +
Preference number: 5 (lower is better)
Translates to: REHTRTVMRIIEQLALSASFFFS*ELSPPS
Trigger: AGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGGA...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCGCTTGAGTTTGGATaGGTGTTGGCTTTTCATAGC +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSLEFG*VLAFHS
Trigger: GCTATGAAAAGCCAACACCAATCCAAACTCAAGCGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACAAGGAATCGCTTGAGTTaGGATTGGTGTTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTRNRLS*DWCWLF
Trigger: GAAAAGCCAACACCAATCCAAACTCAAGCGATTCCT...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCAAGTGCGTTACCACTGAACTATATCCTCAGCCTTGCCTGCACGGTTTTTCCTTTCCACTTCCTGTCTaGGCAATGCCAATCAAATCT +
Preference number: 5 (lower is better)
Translates to: SKCVTTELYPQPCLHGFSFPLPV*AMPIKS
Trigger: AGATTTGATTGGCATTGCCAAGACAGGAAGTGGAAA...GGAAAAACCGTGCAGGCAAGGCTGAGGATATAGTTCAGTGGTAACGCACTTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGACTGTCCCTGTCATATaGATCAATACCTCCGTGAAG +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLTVPVI*INTSVK
Trigger: CTTCACGGAGGTATTGATCAATATGACAGGGACAGT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAGTGGCAACGAGGAGCTaGCAGGTTCCATTCTTAAAG +
Preference number: 5 (lower is better)
Translates to: QGREKTLNSNTSTVERRGVATRS*QVPFLK
Trigger: CTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCAC...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTTCAAACTTGAATCCCTaGCCAGAGAAGCCACTACTC +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFSNLNP*PEKPLL
Trigger: GAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGA...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTCTGAGAGCCAATCTCTaGGCGATTTCTAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFLRANL*AISSFS
Trigger: TGAGAAGCTAGAAATCGCCAAGAGATTGGCTCTCAG...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp GGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCTGGGCGATGAGACGATCGTCCTTTGTTGGTaGGTTGGTATGAATTTTGCA +
Preference number: 5 (lower is better)
Translates to: GVAAVYSEINKLHLGDETIVLCW*VGMNFA
Trigger: TGCAAAATTCATACCAACCAACCAACAAAGGACGAT...CGTCTCATCGCCCAGGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGCACCACTGCACCGGTGTGGCTGCTGTGTACTCTGAAATTAACAAGCTACACCACTTTGTATCGTCCTTaGTTGGTTGGTTGGTATGAA +
Preference number: 5 (lower is better)
Translates to: STTAPVWLLCTLKLTSYTTLYRP*LVGWYE
Trigger: TTCATACCAACCAACCAACAAAGGACGATACAAAGT...GGTGTAGCTTGTTAATTTCAGAGTACACAGCAGCCACACCGGTGCAGTGGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTCCACGTTTGCTTCTTTaGTCAGAGGGTGAGCGACTC +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCPRLLL*SEGERL
Trigger: GAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGG...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTTCTTTCTCGTCCTCCTaGTCATCCTTGTCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFSFSSS*SSLSFF
Trigger: GAAAAAGGACAAGGATGACAAGGAGGACGAGAAAGA...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp ACTCTGAGCCTGTTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATTTCCACTTCCTGTCTaGGCAATGCCAATCAAATCT +
Preference number: 5 (lower is better)
Translates to: TLSLFCKLPSQHSRVLLTFPLPV*AMPIKS
Trigger: AGATTTGATTGGCATTGCCAAGACAGGAAGTGGAAA...TGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAACAGGCTCAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTCCTTCAGCTTTCTGTaGATCTTTGAAGTCACTCCA +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLSFSFL*IFEVTP
Trigger: TGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGGA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 90 bp CACGCTGGATGTGCCGGGTGCAGCCATGTCCTTTACTCTCTTCTTTaGATTAAACATGCTTTCAATCTGTTCATCAATATCAACTGCAGC +
Preference number: 5 (lower is better)
Translates to: HAGCAGCSHVLYSLL*IKHAFNLFININCS
Trigger: GCTGCAGTTGATATTGATGAACAGATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGACATGGCTGCACCCGGCACATCCAGCGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAGCCTGTGAGGGCCGTTaGAAGGTCAACTTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVACEGR*KVNFLL
Trigger: GAGGAGGAAGTTGACCTTCAAACGGCCCTCACAGGC...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGAAGGAATCGCTTGAGTTaGGATTGGTGTTGGCTTTTC +
Preference number: 5 (lower is better)
Translates to: QGREKTLNSNTSTVERRGRNRLS*DWCWLF
Trigger: GAAAAGCCAACACCAATCCAAACTCAAGCGATTCCT...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CAGGGGCGAGAGAAAACCTTAAATAGTAACACTAGCACAGTAGAAAGACGTGGATATAGCAGGAATCGCTaGAGTTTGGATTGGTGTTGG +
Preference number: 5 (lower is better)
Translates to: QGREKTLNSNTSTVERRGYSRNR*SLDWCW
Trigger: CCAACACCAATCCAAACTCAAGCGATTCCTGCTATA...TCCACGTCTTTCTACTGTGCTAGTGTTACTATTTAAGGTTTTCTCTCGCCCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGACTTTGTATCGTCCTTaGTTGGTTGGTTGGTATGAA +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLTLYRP*LVGWYE
Trigger: TTCATACCAACCAACCAACAAAGGACGATACAAAGT...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 90 bp CTCTTCCAGTCCGCCCAGCTCTGTGCACATAATCTTCATAATGATTaGGGCAGCTGTAATTCACTACAAGAATTAGATGTTTCACATCGA +
Preference number: 5 (lower is better)
Translates to: LFQSAQLCAHNLHND*GSCNSLQELDVSHR
Trigger: TCGATGTGAAACATCTAATTCTTGTAGTGAATTACAGCTGCCCCAATCATTATGAAGATTATGTGCACAGAGCTGGGCGGACTGGAAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAGACCGAGATCTTCTCTaGTCCCTACTCCGAGACCTC +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVDRDLL*SLLRDL
Trigger: GAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTC...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCAAACTTGAATCCCTaGCCAGAGAAGCCACTACTC +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSNLNP*PEKPLL
Trigger: GAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTCTGAGAGCCAATCTCTaGGCGATTTCTAGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCLRANL*AISSFS
Trigger: TGAGAAGCTAGAAATCGCCAAGAGATTGGCTCTCAG...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTATCGTCCTTTGTTGGTaGGTTGGTATGAATTTTGCA +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFIVLCW*VGMNFA
Trigger: TGCAAAATTCATACCAACCAACCAACAAAGGACGAT...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TTTTGTAAACTTCCATCACAGCACTCTAGGGTCCTGCTCACATGCTCCAGTCTGTTGTATCGTCCTTTGTaGGTTGGTTGGTATGAATTT +
Preference number: 5 (lower is better)
Translates to: FCKLPSQHSRVLLTCSSLLYRPL*VGWYEF
Trigger: AAATTCATACCAACCAACCAACAAAGGACGATACAA...CAGACTGGAGCATGTGAGCAGGACCCTAGAGTGCTGTGATGGAAGTTTACAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 90 bp GTCATGATGACAGCTATTGGTCCCTCTCCTTCTTCTAATGACCTCTaGTCCATGATGTGTCTAAACATGGGCAAAAGAAAAGCAATGGTT +
Preference number: 5 (lower is better)
Translates to: VMMTAIGPSPSSNDL*SMMCLNMGKRKAMV
Trigger: AACCATTGCTTTTCTTTTGCCCATGTTTAGACACATCATGGATCAGAGGTCATTAGAAGAAGGAGAGGGACCAATAGCTGTCATCATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTACCACGTTTGCTTCTTTaGTCAGAGGGTGAGCGACTC +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVPRLLL*SEGERL
Trigger: GAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGG...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTGAGTTTGGATTGGTGTaGGCTTTTCATAGCCATGCT +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCEFGLV*AFHSHA
Trigger: AGCATGGCTATGAAAAGCCAACACCAATCCAAACTC...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTTCGCTTGAGTTTGGATaGGTGTTGGCTTTTCATAGC +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCSLEFG*VLAFHS
Trigger: GCTATGAAAAGCCAACACCAATCCAAACTCAAGCGA...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp TCTTTAGACTTATTCACTGGAATTACAGACAACTGTAAGCTGCCATGTGGGTGTACTGTCCCTGTCATATaGATCAATACCTCCGTGAAG +
Preference number: 5 (lower is better)
Translates to: SLDLFTGITDNCKLPCGCTVPVI*INTSVK
Trigger: CTTCACGGAGGTATTGATCAATATGACAGGGACAGT...ACACCCACATGGCAGCTTACAGTTGTCTGTAATTCCAGTGAATAAGTCTAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp CCACCAAGTCACCTCGCCTGCCCAACAACCAGTAGTAACAAAAATGCTTTGTTTTTGTATCGTCCTTTGTaGGTTGGTTGGTATGAATTT +
Preference number: 5 (lower is better)
Translates to: PPSHLACPTTSSNKNALFLYRPL*VGWYEF
Trigger: AAATTCATACCAACCAACCAACAAAGGACGATACAA...AAACAAAGCATTTTTGTTACTACTGGTTGTTGGGCAGGCGAGGTGACTTGGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AGAGAGCACACACGCACAGTAATGCGAATCATAGAACAACTTGCACTTTCTGCTACTTTGTATCGTCCTTaGTTGGTTGGTTGGTATGAA +
Preference number: 5 (lower is better)
Translates to: REHTRTVMRIIEQLALSATLYRP*LVGWYE
Trigger: TTCATACCAACCAACCAACAAAGGACGATACAAAGT...AGCAGAAAGTGCAAGTTGTTCTATGATTCGCATTACTGTGCGTGTGTGCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAGTGGCAACGAGGAGCTaGCAGGTTCCATTCTTAAAG +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVVATRS*QVPFLK
Trigger: CTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCAC...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAACCAGCATATCGAGCTaGATCCTCTGTGATGAAGGT +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVTSISS*ILCDEG
Trigger: ACCTTCATCACAGAGGATCAAGCTCGATATGCTGGT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTATCAAACTTGAATCCCTaGCCAGAGAAGCCACTACTC +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVSNLNP*PEKPLL
Trigger: GAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGA...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 90 bp CCATGCTTTTTGAGGGAATTTAGTATCTTCATGGAAATTCCACACTaGACCCATGATTTAATTGGTTTCGGGCAACCTTTTCCTTTAACT +
Preference number: 5 (lower is better)
Translates to: PCFLREFSIFMEIPH*THDLIGFGQPFPLT
Trigger: AGTTAAAGGAAAAGGTTGCCCGAAACCAATTAAATCATGGGTCCAGTGTGGAATTTCCATGAAGATACTAAATTCCCTCAAAAAGCATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTAATCGTCCTTTGTTGGTaGGTTGGTATGAATTTTGCA +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVIVLCW*VGMNFA
Trigger: TGCAAAATTCATACCAACCAACCAACAAAGGACGAT...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS-3UTR CAA 90 bp AACTCCATCATCCTGAAGGAAAGTCAGATTAGAAGTATTATGGTAGAGAATGTATTGTATCGTCCTTTGTaGGTTGGTTGGTATGAATTT +
Preference number: 5 (lower is better)
Translates to: NSIILKESQIRSIMVENVLYRPL*VGWYEF
Trigger: AAATTCATACCAACCAACCAACAAAGGACGATACAA...TACATTCTCTACCATAATACTTCTAATCTGACTTTCCTTCAGGATGATGGAGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp TGCCAGGACTGGAGGACCGGGACCGCCTGCCCCGGCTTCGACTCCTaGAGCGCCTTCTATCTCTGCTCCGAGATCTTCTCCGCTCTCGGC +
Preference number: 6 (lower is better)
Translates to: CQDWRTGTACPGFDS*SAFYLCSEIFSALG
Trigger: GCCGAGAGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCAGTCCTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp GGAGGACCGGGACCGCCTGCCCCGGCTTCGACTCCTTaGGCGCCTTCTATCTCTGCTCCGAGATCTTCTCCG +
Preference number: 6 (lower is better)
Translates to: GGPGPPAPASTP*APSISAPRSSP
Trigger: CGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp TGGAGGACCGGGACCGCCTGCCCCGGCTTCGACTCCTaGAGCGCCTTCTATCTCTGCTCCGAGATCTTCTCC +
Preference number: 6 (lower is better)
Translates to: WRTGTACPGFDS*SAFYLCSEIFS
Trigger: GGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 72 bp ACCTGTTCTCAGTCTTCTTGGTTTTGCTGCCAGGACTaGAGGACCGGGACCGCCTGCCCCGGCTTCGACTCC +
Preference number: 6 (lower is better)
Translates to: TCSQSSWFCCQD*RTGTACPGFDS
Trigger: GGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 72 bp GCTTCTCAGCATTGCCTGCAGTGGGCGCGGGCACGCTaGATGTGCCGGGTGCAGCCATGTCCTTTACTCTCT +
Preference number: 6 (lower is better)
Translates to: ASQHCLQWARAR*MCRVQPCPLLS
Trigger: AGAGAGTAAAGGACATGGCTGCACCCGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS CCA 72 bp TCTTGGCGATTTCTAGCTTCTCAGCATTGCCTGCAGTaGGCGCGGGCACGCTGGATGTGCCGGGTGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SWRFLASQHCLQ*ARARWMCRVQP
Trigger: TGGCTGCACCCGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS GCA 72 bp CCAGCTCGTTGGCACTTTCGATGGCCAGGTAGATCTTaGGCTCTCCTTCCTTGGGCTCCTTGCCGGGAGGGA +
Preference number: 6 (lower is better)
Translates to: PARWHFRWPGRS*ALLPWAPCREG
Trigger: TCCCTCCCGGCAAGGAGCCCAAGGAAGGAGAGCGCAAGATCTACCTGGCCATCGAAAGTGCCAACGAGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp TGCCCCGGCTTCGACTCCTTGAGCGCCTTCTATCTCTaGTCCGAGATCTTCTCCGCTCTCGGCTTCTGTCTC +
Preference number: 6 (lower is better)
Translates to: CPGFDSLSAFYL*SEIFSALGFCL
Trigger: GAGACAGAAGCCGAGAGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAAGGAGTCGAAGCCGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp AGAGCCAATCTCTTGGCGATTTCTAGCTTCTCAGCATaGCCTGCAGTGGGCGCGGGCACGCTGGATGTGCCG +
Preference number: 6 (lower is better)
Translates to: RANLLAISSFSA*PAVGAGTLDVP
Trigger: CGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGAGATTGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS CAA 90 bp TTGATTCTGAGAGCCAATCTCTTGGCGATTTCTAGCTTCTCAGCATaGCCTGCAGTGGGCGCGGGCACGCTGGATGTGCCGGGTGCAGCC +
Preference number: 6 (lower is better)
Translates to: LILRANLLAISSFSA*PAVGAGTLDVPGAA
Trigger: GGCTGCACCCGGCACATCCAGCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGAGATTGGCTCTCAGAATCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS CAA 90 bp TGTCTCGCTCTCTACTTCTGGAGCGCCTCAGGCGCTTCCTGTCCCTaGACCGAGATCTTCTCTTGTCCCTACTCCGAGACCTCTCTCTCC +
Preference number: 6 (lower is better)
Translates to: CLALYFWSASGASCP*TEIFSCPYSETSLS
Trigger: GGAGAGAGAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAGGCGCTCCAGAAGTAGAGAGCGAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp TCTGCTTTCTCTTTGGACCTAGACCTGTTCTCAGTCTTCTTGGTTTaGCTGCCAGGACTGGAGGACCGGGACCGCCTGCCCCGGCTTCGA +
Preference number: 6 (lower is better)
Translates to: SAFSLDLDLFSVFLV*LPGLEDRDRLPRLR
Trigger: TCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACAGGTCTAGGTCCAAAGAGAAAGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp ACTCCTCGATCGACTTCCAGAACGACCTCGAGATGCTaGGCGTTTTCGGTAGTGGCGAGACTCCCGGCCCAT +
Preference number: 6 (lower is better)
Translates to: TPRSTSRTTSRC*AFSVVARLPAH
Trigger: ATGGGCCGGGAGTCTCGCCACTACCGAAAACGCTCAGCATCTCGAGGTCGTTCTGGAAGTCGATCGAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp TACTCCGAGACCTCTCTCTCCTCCGGTCTCTGTCTCTaGTCCGAGAGCGTCTGTCATCCCCACGTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: YSETSLSSGLCL*SESVCHPHVCF
Trigger: GAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAGAGACCGGAGGAGAGAGAGGTCTCGGAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp CTCAGGCGCTTCCTGTCCCTTGACCGAGATCTTCTCTaGTCCCTACTCCGAGACCTCTCTCTCCTCCGGTCT +
Preference number: 6 (lower is better)
Translates to: LRRFLSLDRDLL*SLLRDLSLLRS
Trigger: AGACCGGAGGAGAGAGAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp CTCTACTTCTGGAGCGCCTCAGGCGCTTCCTGTCCCTaGACCGAGATCTTCTCTTGTCCCTACTCCGAGACC +
Preference number: 6 (lower is better)
Translates to: LYFWSASGASCP*TEIFSCPYSET
Trigger: GGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAGGCGCTCCAGAAGTAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp TCTTTGGACCTAGACCTGTTCTCAGTCTTCTTGGTTTaGCTGCCAGGACTGGAGGACCGGGACCGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: SLDLDLFSVFLV*LPGLEDRDRLP
Trigger: GGGCAGGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACAGGTCTAGGTCCAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp CTCCGGTCTCTGTCTCTGCTCCGAGAGCGTCTGTCATCCCCACGTTaGCTTCTTTTGTCAGAGGGTGAGCGACTCCTCGATCGACTTCCA +
Preference number: 6 (lower is better)
Translates to: LRSLSLLRERLSSPR*LLLSEGERLLDRLP
Trigger: TGGAAGTCGATCGAGGAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAGAGACCGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp TCTACTTCTGGAGCGCCTCAGGCGCTTCCTGTCCCTTaGCCGAGATCTTCTCTTGTCCCTACTCCGAGACCT +
Preference number: 6 (lower is better)
Translates to: STSGAPQALPVP*PRSSLVPTPRP
Trigger: AGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAGGCGCTCCAGAAGTAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp TCCACATCGGAGCAAACCACACTCCTGCCTCCAACCTaGACTTCAATAGGTTTGCTCAGGATCCTGCGGGCC +
Preference number: 6 (lower is better)
Translates to: STSEQTTLLPPT*TSIGLLRILRA
Trigger: GGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAGTGTGGTTTGCTCCGATGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp ATGGTGATGGCGGCCTCAGAGTACTCGCTGATCCTCTaGAGGGCTTCCTTTGAGGTGACTTTCCACCTCGCA +
Preference number: 6 (lower is better)
Translates to: MVMAASEYSLIL*RASFEVTFHLA
Trigger: TGCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCAGAGGATCAGCGAGTACTCTGAGGCCGCCATCACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp CTGTCTCTGCTCCGAGAGCGTCTGTCATCCCCACGTTTGCTTCTTTaGTCAGAGGGTGAGCGACTCCTCGATCGACTTCCAGAACGACCT +
Preference number: 6 (lower is better)
Translates to: LSLLRERLSSPRLLL*SEGERLLDRLPERP
Trigger: AGGTCGTTCTGGAAGTCGATCGAGGAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp CTCCGAGAGCGTCTGTCATCCCCACGTTTGCTTCTTTaGTCAGAGGGTGAGCGACTCCTCGATCGACTTCCA +
Preference number: 6 (lower is better)
Translates to: LRERLSSPRLLL*SEGERLLDRLP
Trigger: TGGAAGTCGATCGAGGAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp CTGTCTCTGCTCCGAGAGCGTCTGTCATCCCCACGTTaGCTTCTTTTGTCAGAGGGTGAGCGACTCCTCGAT +
Preference number: 6 (lower is better)
Translates to: LSLLRERLSSPR*LLLSEGERLLD
Trigger: ATCGAGGAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp GCTTTCTCTTTGGACCTAGACCTGTTCTCAGTCTTCTaGGTTTTGCTGCCAGGACTGGAGGACCGGGACCGC +
Preference number: 6 (lower is better)
Translates to: AFSLDLDLFSVF*VLLPGLEDRDR
Trigger: GCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACAGGTCTAGGTCCAAAGAGAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp ACCACACTCCTGCCTCCAACCTGCACTTCAATAGGTTaGCTCAGGATCCTGCGGGCCAAAGCCTCCATAGCT +
Preference number: 6 (lower is better)
Translates to: TTLLPPTCTSIG*LRILRAKASIA
Trigger: AGCTATGGAGGCTTTGGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCAGGTTGGAGGCAGGAGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp TCTGTCATCCCCACGTTTGCTTCTTTTGTCAGAGGGTaGGCGACTCCTCGATCGACTTCCAGAACGACCTCG +
Preference number: 6 (lower is better)
Translates to: SVIPTFASFVRG*ATPRSTSRTTS
Trigger: CGAGGTCGTTCTGGAAGTCGATCGAGGAGTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp TGTGAGGGCCGTTTGAAGGTCAACTTCCTCCTCCTCTaGGGAATACTCCATGGCGTCCTGGTCATTCTCCAT +
Preference number: 6 (lower is better)
Translates to: CEGRLKVNFLLL*GILHGVLVILH
Trigger: ATGGAGAATGACCAGGACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTTGACCTTCAAACGGCCCTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 72 bp ACTTCCTCCTCCTCTGAGGAATACTCCATGGCGTCCTaGTCATTCTCCATGAGTTCCCCCTTCTTCTTATCC +
Preference number: 6 (lower is better)
Translates to: TSSSSEEYSMAS*SFSMSSPFFLS
Trigger: GGATAAGAAGAAGGGGGAACTCATGGAGAATGACCAGGACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp TCCATGAGTTCCCCCTTCTTCTTATCCGCGTCTACTACTGCTTTCTaGGTGGTCACCACAGTGACAACTTTTGTGACTGTTGGCCCAGAC +
Preference number: 6 (lower is better)
Translates to: SMSSPFFLSASTTAF*VVTTVTTFVTVGPD
Trigger: GTCTGGGCCAACAGTCACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTAGTAGACGCGGATAAGAAGAAGGGGGAACTCATGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp TTCTCCTTGGAGCTGTCCCCACCTTCTGCTTTCTCTTaGGACCTAGACCTGTTCTCAGTCTTCTTGGTTTTG +
Preference number: 6 (lower is better)
Translates to: FSLELSPPSAFS*DLDLFSVFLVL
Trigger: CAAAACCAAGAAGACTGAGAACAGGTCTAGGTCCAAAGAGAAAGCAGAAGGTGGGGACAGCTCCAAGGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp TTCACATCGAGACCACGAGCTGCAACAGATGTGGCAACGAGGAGCTaGCAGGTTCCATTCTTAAAGTCATTTATGATACTGTCCCTGTCA +
Preference number: 6 (lower is better)
Translates to: FTSRPRAATDVATRS*QVPFLKSFMILSLS
Trigger: TGACAGGGACAGTATCATAAATGACTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCACATCTGTTGCAGCTCGTGGTCTCGATGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp CATGAGTTCCCCCTTCTTCTTATCCGCGTCTACTACTaGTTTCTTGGTGGTCACCACAGTGACAACTTTTGT +
Preference number: 6 (lower is better)
Translates to: HEFPLLLIRVYY*FLGGHHSDNFC
Trigger: ACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTAGTAGACGCGGATAAGAAGAAGGGGGAACTCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp TCCCCCTTCTTCTTATCCGCGTCTACTACTGCTTTCTaGGTGGTCACCACAGTGACAACTTTTGTGACTGTT +
Preference number: 6 (lower is better)
Translates to: SPFFLSASTTAF*VVTTVTTFVTV
Trigger: AACAGTCACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTAGTAGACGCGGATAAGAAGAAGGGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp TTCAGCTCTCCTATGTTCTCCATAGCCTTCTTACGCTaGTCTTCGCGCCATTTTTCAACTCTTTCTTTCCGT +
Preference number: 6 (lower is better)
Translates to: FSSPMFSIAFLR*SSRHFSTLSFR
Trigger: ACGGAAAGAAAGAGTTGAAAAATGGCGCGAAGAGCAGCGTAAGAAGGCTATGGAGAACATAGGAGAGCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp CCCTGTCATATTGATCAATACCTCCGTGAAGAGACATaGAAGGGTACGATGCTCTCATCAAGTCCTTCAGAA +
Preference number: 6 (lower is better)
Translates to: PCHIDQYLREET*KGTMLSSSPSE
Trigger: TTCTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAGGTATTGATCAATATGACAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp AGACCACGAGCTGCAACAGATGTGGCAACGAGGAGCTaGCAGGTTCCATTCTTAAAGTCATTTATGATACTG +
Preference number: 6 (lower is better)
Translates to: RPRAATDVATRS*QVPFLKSFMIL
Trigger: CAGTATCATAAATGACTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCACATCTGTTGCAGCTCGTGGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS GCA 72 bp CTCATCAAGTCCTTCAGAAGACCATCTGCGTGTTCCTaGTTATCCACAAATATAATGACAGATCCTGACTCC +
Preference number: 6 (lower is better)
Translates to: LIKSFRRPSACS*LSTNIMTDPDS
Trigger: GGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAACACGCAGATGGTCTTCTGAAGGACTTGATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp GGCAATGCCAATCAAATCTCGTCCAGACATTATAGCAGGAATCGCTaGAGTTTGGATTGGTGTTGGCTTTTCATAGCCATGCTTTTTGAG +
Preference number: 6 (lower is better)
Translates to: GNANQISSRHYSRNR*SLDWCWLFIAMLFE
Trigger: CTCAAAAAGCATGGCTATGAAAAGCCAACACCAATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGACGAGATTTGATTGGCATTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp TCTGTCGGTCAGGACGAACGTTATCCACAATGCGCATaGCATCTGCTTCAACAAAAATCATGTCAAGTACAA +
Preference number: 6 (lower is better)
Translates to: SVGQDERYPQCA*HLLQQKSCQVQ
Trigger: TTGTACTTGACATGATTTTTGTTGAAGCAGATGTCATGCGCATTGTGGATAACGTTCGTCCTGACCGACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099479.4
CDS CCA 72 bp TCCAGACATTATAGCAGGAATCGCTTGAGTTTGGATTaGTGTTGGCTTTTCATAGCCATGCTTTTTGAGGGA +
Preference number: 6 (lower is better)
Translates to: SRHYSRNRLSLD*CWLFIAMLFEG
Trigger: TCCCTCAAAAAGCATGGCTATGAAAAGCCAACACCAATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp TTCAAGAGCTTTAATGATGTCACCAGCATATCGAGCTaGATCCTCTGTGATGAAGGTGTAGGCATAACCCTT +
Preference number: 6 (lower is better)
Translates to: FKSFNDVTSISS*ILCDEGVGITL
Trigger: AAGGGTTATGCCTACACCTTCATCACAGAGGATCAAGCTCGATATGCTGGTGACATCATTAAAGCTCTTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp GCCAATCAAATCTCGTCCAGACATTATAGCAGGAATCGCTTGAGTTaGGATTGGTGTTGGCTTTTCATAGCCATGCTTTTTGAGGGAATT +
Preference number: 6 (lower is better)
Translates to: ANQISSRHYSRNRLS*DWCWLFIAMLFEGI
Trigger: AATTCCCTCAAAAAGCATGGCTATGAAAAGCCAACACCAATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGACGAGATTTGATTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp ACAGCTATTGGTCCCTCTCCTTCTTCTAATGACCTCTaGTCCATGATGTGTCTAAACATGGGCAAAAGAAAA +
Preference number: 6 (lower is better)
Translates to: TAIGPSPSSNDL*SMMCLNMGKRK
Trigger: TTTTCTTTTGCCCATGTTTAGACACATCATGGATCAGAGGTCATTAGAAGAAGGAGAGGGACCAATAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CCA 72 bp TCCGCCCAGCTCTGTGCACATAATCTTCATAATGATTaGGGCAGCTGTAATTCACTACAAGAATTAGATGTT +
Preference number: 6 (lower is better)
Translates to: SAQLCAHNLHND*GSCNSLQELDV
Trigger: AACATCTAATTCTTGTAGTGAATTACAGCTGCCCCAATCATTATGAAGATTATGTGCACAGAGCTGGGCGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp ATCTCGTCCAGACATTATAGCAGGAATCGCTTGAGTTaGGATTGGTGTTGGCTTTTCATAGCCATGCTTTTT +
Preference number: 6 (lower is better)
Translates to: ISSRHYSRNRLS*DWCWLFIAMLF
Trigger: AAAAAGCATGGCTATGAAAAGCCAACACCAATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGACGAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 72 bp AATCAAATCTCGTCCAGACATTATAGCAGGAATCGCTaGAGTTTGGATTGGTGTTGGCTTTTCATAGCCATG +
Preference number: 6 (lower is better)
Translates to: NQISSRHYSRNR*SLDWCWLFIAM
Trigger: CATGGCTATGAAAAGCCAACACCAATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGACGAGATTTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS TCA 72 bp TGTGCCGGGTGCAGCCATGTCCTTTACTCTCTTCTTTaGATTAAACATGCTTTCAATCTGTTCATCAATATC +
Preference number: 6 (lower is better)
Translates to: CAGCSHVLYSLL*IKHAFNLFINI
Trigger: GATATTGATGAACAGATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGACATGGCTGCACCCGGCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS GCA 72 bp ATTAAACATGCTTTCAATCTGTTCATCAATATCAACTaGAGCATCCTCGTCATCAGAATCTTGCAGGCCAAG +
Preference number: 6 (lower is better)
Translates to: IKHAFNLFININ*SILVIRILQAK
Trigger: CTTGGCCTGCAAGATTCTGATGACGAGGATGCTGCAGTTGATATTGATGAACAGATTGAAAGCATGTTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS CAA 90 bp CTCTCATTGGCTAAAGCCTGTTCTGTTTCATCAAACTTGAATCCCTaGCCAGAGAAGCCACTACTCTTTTTAATTATTTTTCCTTCAGCT +
Preference number: 6 (lower is better)
Translates to: LSLAKACSVSSNLNP*PEKPLLFLIIFPSA
Trigger: AGCTGAAGGAAAAATAATTAAAAAGAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGATGAAACAGAACAGGCTTTAGCCAATGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2
CDS CCA 72 bp TTGAGGGAATTTAGTATCTTCATGGAAATTCCACACTaGACCCATGATTTAATTGGTTTCGGGCAACCTTTT +
Preference number: 6 (lower is better)
Translates to: LREFSIFMEIPH*THDLIGFGQPF
Trigger: AAAAGGTTGCCCGAAACCAATTAAATCATGGGTCCAGTGTGGAATTTCCATGAAGATACTAAATTCCCTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
CDS CAA 90 bp AGCTTTTTCCTCTCATTGGCTAAAGCCTGTTCTGTTTCATCAAACTaGAATCCCTTGCCAGAGAAGCCACTACTCTTTTTAATTATTTTT +
Preference number: 6 (lower is better)
Translates to: SFFLSLAKACSVSSN*NPLPEKPLLFLIIF
Trigger: AAAAATAATTAAAAAGAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGATGAAACAGAACAGGCTTTAGCCAATGAGAGGAAAAAGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000099479.4
ENSMUST00000172272.8
ENSMUST00000223736.2
ENSMUST00000231097.2