Pregenerated sensors for DDX43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070291Ensembl transcript IDs: ENSMUST00000113367.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCAACCATTCAGCTTCTACTTaGAGGGCTAATTCCCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: TSTLTTILNPAAPSAPRNHSAST*RANSRV Trigger: CACCCGGGAATTAGCCCTTCAAGTAGAAGCTGAATG...GTTGCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR GCA 90 bp | AACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCTTACACTCTCACTTGTaGTGGTATCTGCTCCAACGG | + |
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Preference number: 4 (lower is better) Translates to: NTSTLTTILNPAAPSAPRLHSHL*WYLLQR Trigger: CCGTTGGAGCAGATACCAGCACAAGTGAGAGTGTAA...GCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR GCA 90 bp | ACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCAACCTTGTCATAATAGTCTaGCGGTCTGGGCGTACATCT | + |
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Preference number: 4 (lower is better) Translates to: TSTLTTILNPAAPSAPRNLVIIV*RSGRTS Trigger: AGATGTACGCCCAGACCGGCAGACTATTATGACAAG...GTTGCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | ACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCAACGACTTTGTCTTTAGGTaGCATATTCTCGAGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: TSTLTTILNPAAPSAPRNDFVFR*HILEEG Trigger: ACCTTCCTCGAGAATATGTCACCTAAAGACAAAGTC...GTTGCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR GCA 90 bp | TTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCATGTTCTCTGTTGCCGTaGAGAGACTCCACTGATATG | + |
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Preference number: 4 (lower is better) Translates to: FNTSTLTTILNPAAPSAPCSLLP*RDSTDM Trigger: CATATCAGTGGAGTCTCTGCACGGCAACAGAGAACA...TGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CCA 90 bp | ACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCAACATCCCAATCTATCAATaGCTGATCGTCTGTTACACT | + |
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Preference number: 4 (lower is better) Translates to: TSTLTTILNPAAPSAPRNIPIYQ*LIVCYT Trigger: AGTGTAACAGACGATCAGCCATTGATAGATTGGGAT...GTTGCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | ACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCAACGATGTCTACACCTTTTaGAACATCTTGTATTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TSTLTTILNPAAPSAPRNDVYTF*NILYLS Trigger: GGACAAATACAAGATGTTTCAAAAGGTGTAGACATC...GTTGCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | GTATGTTTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTATCGGTGTAGGTTTTTaGAAGCCTGCTCTTTTAATG | + |
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Preference number: 4 (lower is better) Translates to: VCFNTSTLTTILNPAAPSIGVGF*KPALLM Trigger: CATTAAAAGAGCAGGCTTTCAAAAACCTACACCGAT...ACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAAACATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | GCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTTCCACTTTGACTACAATCTCCTCTGGGATATTCTaGTTTGCTCTTTCTAGAATA | + |
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Preference number: 4 (lower is better) Translates to: AKSLHSDVCFNTSTLTTISSGIF*FALSRI Trigger: TATTCTAGAAAGAGCAAATCAGAATATCCCAGAGGA...GATTGTAGTCAAAGTGGAAGTGTTGAAACATACGTCACTATGGAGAGACTTGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR GCA 90 bp | GCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTTCCACTTTGACTACAATCAACGGTAGGTTGGAATaGAATAATACCAACTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: AKSLHSDVCFNTSTLTTINGRLE*NNTNSL Trigger: CAAAGAGTTGGTATTATTGCATTCCAACCTACCGTT...GATTGTAGTCAAAGTGGAAGTGTTGAAACATACGTCACTATGGAGAGACTTGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CCA 90 bp | GCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTTCCACTTTGACTACAATCGTTTTCCATTACTTCTaGGTAACTTTGAAAGGCATC | + |
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Preference number: 4 (lower is better) Translates to: AKSLHSDVCFNTSTLTTIVFHYF*VTLKGI Trigger: GATGCCTTTCAAAGTTACCCAGAAGTAATGGAAAAC...GATTGTAGTCAAAGTGGAAGTGTTGAAACATACGTCACTATGGAGAGACTTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | ACACACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCAGATTTCTCTAATTTTTaGCCCACCACGACCTATCAC | + |
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Preference number: 4 (lower is better) Translates to: THYYFKNQPSLSIVTYVSDFSNF*PTTTYH Trigger: GTGATAGGTCGTGGTGGGTCAAAAATTAGAGAAATC...TGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR TCA 90 bp | CACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCAACAAGGAAGGTCTGGATATaGGTTCGTTTCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: HYYFKNQPSLSIVTYVSTRKVWI*VRFSSS Trigger: AGAAGAAGAGAAACGAACTCATATCCAGACCTTCCT...TGTTGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR GCA 90 bp | CACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTCCAGTTGTCTATTTaGACTTGTGACATTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: HYYFKNQPSLSIVTYVSTLQLSI*TCDIEL Trigger: AAGCTCAATGTCACAAGTGCAAATAGACAACTGGAG...TGTTGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS GCA 90 bp | CCTCGGCGGCCCCGGCGGGCTCTCTCCAGCCGCCGCCCGCACCCCTaGTACCGACCCGGCCTCTCCGGTTCGTCTCCTCCGTCGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: PRRPRRALSSRRPHP*YRPGLSGSSPPSLS Trigger: GGACAGCGACGGAGGAGACGAACCGGAGAGGCCGGGTCGGTAGCAGGGGTGCGGGCGGCGGCTGGAGAGAGCCCGCCGGGGCCGCCGAGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | TTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACCCGAGGAGGAAGCGTaGGCTGCGGGTTCCCGCCTA | + |
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Preference number: 5 (lower is better) Translates to: FNTSTLTTILNPAAPSAPPEEEA*AAGSRL Trigger: TAGGCGGGAACCCGCAGCCAACGCTTCCTCCTCGGG...TGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | AACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACGCTCACTCTGTTCTCTGTaGCCGTGCAGAGACTCCACT | + |
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Preference number: 5 (lower is better) Translates to: NTSTLTTILNPAAPSAPRSLCSL*PCRDST Trigger: AGTGGAGTCTCTGCACGGCAACAGAGAACAGAGTGA...GCGTGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS TCA 90 bp | TACCTGTATCCTAGTGTTCGTTGTATTTTGGATTTCTCTAATTTTTaGCCCACCACGACCTATCACCGCGCCCACCACATCGTTCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: YLYPSVRCILDFSNF*PTTTYHRAHHIVLH Trigger: GTGAAGAACGATGTGGTGGGCGCGGTGATAGGTCGTGGTGGGTCAAAAATTAGAGAAATCCAAAATACAACGAACACTAGGATACAGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | TTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCACTTGTGACATTGAGCTaGTCGTTGCTGACTCTATGT | + |
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Preference number: 5 (lower is better) Translates to: FNTSTLTTILNPAAPSAPLVTLS*SLLTLC Trigger: ACATAGAGTCAGCAACGACAAGCTCAATGTCACAAG...TGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS GCA 90 bp | TATCAATGGCTGATCGTCTGTTACACTCTCACTTGTGCTGGTATCTaGTCCAACGGTAGGTTGGAATGCAATAATACCAACTCTTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: YQWLIVCYTLTCAGI*SNGRLECNNTNSLS Trigger: GGACAAAGAGTTGGTATTATTGCATTCCAACCTACCGTTGGAGCAGATACCAGCACAAGTGAGAGTGTAACAGACGATCAGCCATTGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | GCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTTCCACTTTGACTACAATCCTGTTACACTCTCACTaGTGCTGGTATCTGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: AKSLHSDVCFNTSTLTTILLHSH*CWYLLQ Trigger: TTGGAGCAGATACCAGCACAAGTGAGAGTGTAACAG...GATTGTAGTCAAAGTGGAAGTGTTGAAACATACGTCACTATGGAGAGACTTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | GTATGTTTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTAATTTACATATAGGGTaGGGGATAGGACGCTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: VCFNTSTLTTILNPAAPSNLHIG*GIGRFS Trigger: TGAGAAGCGTCCTATCCCCAACCCTATATGTAAATT...ACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAAACATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | TTCAACACTTCCACTTTGACTACAATCTTGAATCCTGCGGCACCTAGTGCTCCAAATCGGTGTAGGTTTTaGAAAGCCTGCTCTTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: FNTSTLTTILNPAAPSAPNRCRF*KACSFN Trigger: ATTAAAAGAGCAGGCTTTCAAAAACCTACACCGATT...TGGAGCACTAGGTGCCGCAGGATTCAAGATTGTAGTCAAAGTGGAAGTGTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | GCCAAGTCTCTCCATAGTGACGTATGTTTCAACACTTCCACTTTGACTACAATCAGCATCTTCTCGAATTaGATCCCAATCTATCAATGG | + |
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Preference number: 5 (lower is better) Translates to: AKSLHSDVCFNTSTLTTISIFSN*IPIYQW Trigger: CCATTGATAGATTGGGATCAAATTCGAGAAGATGCT...GATTGTAGTCAAAGTGGAAGTGTTGAAACATACGTCACTATGGAGAGACTTGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | ACACACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCATTCTTTCAAATAAGATaGTGCAAGACGGCGGACGGC | + |
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Preference number: 5 (lower is better) Translates to: THYYFKNQPSLSIVTYVSFFQIR*CKTADG Trigger: GCCGTCCGCCGTCTTGCACAATCTTATTTGAAAGAA...TGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | CACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCAACATTTGCACTTGTGACATaGAGCTTGTCGTTGCTGACT | + |
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Preference number: 5 (lower is better) Translates to: HYYFKNQPSLSIVTYVSTFALVT*SLSLLT Trigger: AGTCAGCAACGACAAGCTCAATGTCACAAGTGCAAA...TGTTGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS-3UTR CAA 90 bp | CACTATTATTTTAAGAATCAGCCAAGTCTCTCCATAGTGACGTATGTTTCAACATTTTCTTTCCTCCAGTaGTCTATTTGCACTTGTGAC | + |
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Preference number: 5 (lower is better) Translates to: HYYFKNQPSLSIVTYVSTFSFLQ*SICTCD Trigger: GTCACAAGTGCAAATAGACAACTGGAGGAAAGAAAA...TGTTGAAACATACGTCACTATGGAGAGACTTGGCTGATTCTTAAAATAATAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS GCA 72 bp | CCCCGGCGGGCTCTCTCCAGCCGCCGCCCGCACCCCTaGTACCGACCCGGCCTCTCCGGTTCGTCTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: PRRALSSRRPHP*YRPGLSGSSPP Trigger: CGGAGGAGACGAACCGGAGAGGCCGGGTCGGTAGCAGGGGTGCGGGCGGCGGCTGGAGAGAGCCCGCCGGGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS TCA 72 bp | GGCAACCCTCCAATCATTTCTTGTGATAAGGGTAATTaGCATTCCAGTGCGCCCTGCTCTCCCAGTGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: GNPPIISCDKGN*HSSAPCSPSAP Trigger: GGGCGCACTGGGAGAGCAGGGCGCACTGGAATGTCAATTACCCTTATCACAAGAAATGATTGGAGGGTTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS GCA 72 bp | AACGCTTTCTCTCGGTCACTCTGTTCTCTGTTGCCGTaGAGAGACTCCACTGATATGTGTCGGAGAATCAGA | + |
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Preference number: 6 (lower is better) Translates to: NAFSRSLCSLLP*RDSTDMCRRIR Trigger: TCTGATTCTCCGACACATATCAGTGGAGTCTCTGCACGGCAACAGAGAACAGAGTGACCGAGAGAAAGCGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS GCA 72 bp | CTGATCGTCTGTTACACTCTCACTTGTGCTGGTATCTaGTCCAACGGTAGGTTGGAATGCAATAATACCAAC | + |
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Preference number: 6 (lower is better) Translates to: LIVCYTLTCAGI*SNGRLECNNTN Trigger: GTTGGTATTATTGCATTCCAACCTACCGTTGGAGCAGATACCAGCACAAGTGAGAGTGTAACAGACGATCAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS CAA 72 bp | TCAGCAACGGCTTTTCTGCTGACAAAGACAATGACTTaGTCTTTAGGTGACATATTCTCGAGGAAGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SATAFLLTKTMT*SLGDIFSRKVW Trigger: CCAGACCTTCCTCGAGAATATGTCACCTAAAGACAAAGTCATTGTCTTTGTCAGCAGAAAAGCCGTTGCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS CCA 72 bp | CAAAGCATCTTCTCGAATTTGATCCCAATCTATCAATaGCTGATCGTCTGTTACACTCTCACTTGTGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: QSIFSNLIPIYQ*LIVCYTLTCAG Trigger: ACCAGCACAAGTGAGAGTGTAACAGACGATCAGCCATTGATAGATTGGGATCAAATTCGAGAAGATGCTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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| CDS TCA 72 bp | TCTTTAGGTGACATATTCTCGAGGAAGGTCTGGATATaGGTTCGTTTCTCTTCTTCTGTGGTAATGATTATA | + |
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Preference number: 6 (lower is better) Translates to: SLGDIFSRKVWI*VRFSSSVVMII Trigger: TATAATCATTACCACAGAAGAAGAGAAACGAACTCATATCCAGACCTTCCTCGAGAATATGTCACCTAAAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113367.2 |
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