Pregenerated sensors for DDX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021758Ensembl transcript IDs: ENSMUST00000075748.7, ENSMUST00000099166.10
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTCTGCAAGCTCCTCCCACTTGCCCAACAGCGACAAACAAGTAACTaGACTTTAGAAAGTCCCCAGCCAACCTCTGGATTTCTTCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: LCKLLPLAQQRQTSN*TLESPQPTSGFLLE Trigger: TTCCAGAAGAAATCCAGAGGTTGGCTGGGGACTTTCTAAAGTCCAGTTACTTGTTTGTCGCTGTTGGGCAAGTGGGAGGAGCTTGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 90 bp | GCTGGTTTCCTAGAACCAAAAAGGCCACCACCACGCTGTGTCCCCTaGTCTTGGTCAGATTCACTATTTGGTCTTCCTAGACCAAATCCT | + |
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Preference number: 5 (lower is better) Translates to: AGFLEPKRPPPRCVP*SWSDSLFGLPRPNP Trigger: AGGATTTGGTCTAGGAAGACCAAATAGTGAATCTGACCAAGATCAGGGGACACAGCGTGGTGGTGGCCTTTTTGGTTCTAGGAAACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 90 bp | TTTTTGAATACTGGCCAACTTGAAGGATCGTCTGCTGAACATCTCTaGAAGCTCCTCCCACTTGCCCAACAGCGACAAACAAGTAACTGG | + |
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Preference number: 5 (lower is better) Translates to: FLNTGQLEGSSAEHL*KLLPLAQQRQTSNW Trigger: CCAGTTACTTGTTTGTCGCTGTTGGGCAAGTGGGAGGAGCTTGCAGAGATGTTCAGCAGACGATCCTTCAAGTTGGCCAGTATTCAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 90 bp | CCATCTTGGCAGCCACCTCGCTTGGAAAACCCTCTGCTTCGAGTCTaGTTATCTTCACAGTCATTATTAGACTCTTTCCAGAAACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: PSWQPPRLENPLLRV*LSSQSLLDSFQKPE Trigger: CTCTGGTTTCTGGAAAGAGTCTAATAATGACTGTGAAGATAATCAGACTCGAAGCAGAGGGTTTTCCAAGCGAGGTGGCTGCCAAGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 90 bp | TATGCCTGTCTGATAATGTGCAAAGATGGAGTCCTCATCCTCTGGTaGAGGAGGGGGTATATATGTCACTTTTGGACCTTGACTATCACT | + |
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Preference number: 5 (lower is better) Translates to: YACLIMCKDGVLILW*RRGYICHFWTLTIT Trigger: AGTGATAGTCAAGGTCCAAAAGTGACATATATACCCCCTCCTCCACCAGAGGATGAGGACTCCATCTTTGCACATTATCAGACAGGCATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 90 bp | GTTTATGCCTGTCTGATAATGTGCAAAGATGGAGTCCTCATCCTCTaGTGGAGGAGGGGGTATATATGTCACTTTTGGACCTTGACTATC | + |
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Preference number: 5 (lower is better) Translates to: VYACLIMCKDGVLIL*WRRGYICHFWTLTI Trigger: GATAGTCAAGGTCCAAAAGTGACATATATACCCCCTCCTCCACCAGAGGATGAGGACTCCATCTTTGCACATTATCAGACAGGCATAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 90 bp | TTTGAGGCCAATCTTTTCTTTGCCTATGATGTCCATCAGCCTCCCTaGAGTAGCACACAATATGTTACACCCTTGTACTATCTGTCGAAC | + |
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Preference number: 5 (lower is better) Translates to: FEANLFFAYDVHQPP*SSTQYVTPLYYLSN Trigger: GTTCGACAGATAGTACAAGGGTGTAACATATTGTGTGCTACTCCAGGGAGGCTGATGGACATCATAGGCAAAGAAAAGATTGGCCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 90 bp | TGGAGTAGCACACAATATGTTACACCCTTGTACTATCTGTCGAACTaGATGACCAAACTGGGTTCCTCCATATATGACCACAGCTCTTAC | + |
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Preference number: 5 (lower is better) Translates to: WSSTQYVTPLYYLSN*MTKLGSSIYDHSSY Trigger: GTAAGAGCTGTGGTCATATATGGAGGAACCCAGTTTGGTCATTCAGTTCGACAGATAGTACAAGGGTGTAACATATTGTGTGCTACTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 90 bp | TTGATCAGTTCTCGAGTTGGTGCTACAATAATACACTCTGGTTCCTaGAGTTCTTTAAAGCGACTGGCAGTTATTCCATCCCGCATCATA | + |
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Preference number: 5 (lower is better) Translates to: LISSRVGATIIHSGS*SSLKRLAVIPSRII Trigger: TATGATGCGGGATGGAATAACTGCCAGTCGCTTTAAAGAACTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTCGAGAACTGATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 90 bp | GTAGCACACAATATGTTACACCCTTGTACTATCTGTCGAACTGAATaGCCAAACTGGGTTCCTCCATATATGACCACAGCTCTTACACAA | + |
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Preference number: 5 (lower is better) Translates to: VAHNMLHPCTICRTE*PNWVPPYMTTALTQ Trigger: TTGTGTAAGAGCTGTGGTCATATATGGAGGAACCCAGTTTGGTCATTCAGTTCGACAGATAGTACAAGGGTGTAACATATTGTGTGCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 90 bp | GTCCAGATACTTCAACAAGTATGGTGTCATATTTATCAAAGTTTATaGCTGTCTGATAATGTGCAAAGATGGAGTCCTCATCCTCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: VQILQQVWCHIYQSL*LSDNVQRWSPHPLV Trigger: CACCAGAGGATGAGGACTCCATCTTTGCACATTATCAGACAGGCATAAACTTTGATAAATATGACACCATACTTGTTGAAGTATCTGGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 90 bp | TCAAAATTGCCGGTGGTGCATCATGTCCAGATACTTCAACAAGTATaGTGTCATATTTATCAAAGTTTATGCCTGTCTGATAATGTGCAA | + |
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Preference number: 5 (lower is better) Translates to: SKLPVVHHVQILQQV*CHIYQSLCLSDNVQ Trigger: TTGCACATTATCAGACAGGCATAAACTTTGATAAATATGACACCATACTTGTTGAAGTATCTGGACATGATGCACCACCGGCAATTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CAA 90 bp | GGCCACCACCACGCTGTGTCCCCTGATCTTGGTCAGATTCACTATTaGGTCTTCCTAGACCAAATCCTCCACGGCAGCCTCGGAAACTGC | + |
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Preference number: 6 (lower is better) Translates to: GHHHAVSPDLGQIHY*VFLDQILHGSLGNC Trigger: GCAGTTTCCGAGGCTGCCGTGGAGGATTTGGTCTAGGAAGACCAAATAGTGAATCTGACCAAGATCAGGGGACACAGCGTGGTGGTGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 72 bp | CACGGCAGCCTCGGAAACTGCCTCTTCCCCCTCTTCTaGACGGGCCTGATGCTTCTGAATCGTTTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: HGSLGNCLFPLF*TGLMLLNRFHL Trigger: AAGATGGAAACGATTCAGAAGCATCAGGCCCGTTCAGAAGAGGGGGAAGAGGCAGTTTCCGAGGCTGCCGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 72 bp | ACTGGCCAACTTGAAGGATCGTCTGCTGAACATCTCTaGAAGCTCCTCCCACTTGCCCAACAGCGACAAACA | + |
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Preference number: 6 (lower is better) Translates to: TGQLEGSSAEHL*KLLPLAQQRQT Trigger: TGTTTGTCGCTGTTGGGCAAGTGGGAGGAGCTTGCAGAGATGTTCAGCAGACGATCCTTCAAGTTGGCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CAA 72 bp | CACGCTGTGTCCCCTGATCTTGGTCAGATTCACTATTaGGTCTTCCTAGACCAAATCCTCCACGGCAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: HAVSPDLGQIHY*VFLDQILHGSL Trigger: GAGGCTGCCGTGGAGGATTTGGTCTAGGAAGACCAAATAGTGAATCTGACCAAGATCAGGGGACACAGCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 72 bp | AAGGCAATCTCTTCTAGCCATGCGGGGACATCCTGTTaGGCGTCTGACAGTACTTTAACTAGAGGCTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: KAISSSHAGTSC*ASDSTLTRGCA Trigger: AGCACAGCCTCTAGTTAAAGTACTGTCAGACGCTCAACAGGATGTCCCCGCATGGCTAGAAGAGATTGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 72 bp | CTCCTCCCACTTGCCCAACAGCGACAAACAAGTAACTaGACTTTAGAAAGTCCCCAGCCAACCTCTGGATTT | + |
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Preference number: 6 (lower is better) Translates to: LLPLAQQRQTSN*TLESPQPTSGF Trigger: AAATCCAGAGGTTGGCTGGGGACTTTCTAAAGTCCAGTTACTTGTTTGTCGCTGTTGGGCAAGTGGGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 72 bp | GTGAAGAAGAAATCCCCGCTGTATTCAACGTGTGCTTaGCCTGGTAATTCTTCCTCGTGTCAACAGATGCAA | + |
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Preference number: 6 (lower is better) Translates to: VKKKSPLYSTCA*PGNSSSCQQMQ Trigger: TTGCATCTGTTGACACGAGGAAGAATTACCAGGGCAAGCACACGTTGAATACAGCGGGGATTTCTTCTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 72 bp | CTGATAATGTGCAAAGATGGAGTCCTCATCCTCTGGTaGAGGAGGGGGTATATATGTCACTTTTGGACCTTG | + |
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Preference number: 6 (lower is better) Translates to: LIMCKDGVLILW*RRGYICHFWTL Trigger: CAAGGTCCAAAAGTGACATATATACCCCCTCCTCCACCAGAGGATGAGGACTCCATCTTTGCACATTATCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 72 bp | CAGCCACCTCGCTTGGAAAACCCTCTGCTTCGAGTCTaGTTATCTTCACAGTCATTATTAGACTCTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: QPPRLENPLLRV*LSSQSLLDSFQ Trigger: CTGGAAAGAGTCTAATAATGACTGTGAAGATAATCAGACTCGAAGCAGAGGGTTTTCCAAGCGAGGTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 72 bp | TCTCGAGTTGGTGCTACAATAATACACTCTGGTTCCTaGAGTTCTTTAAAGCGACTGGCAGTTATTCCATCC | + |
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Preference number: 6 (lower is better) Translates to: SRVGATIIHSGS*SSLKRLAVIPS Trigger: GGATGGAATAACTGCCAGTCGCTTTAAAGAACTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTCGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CAA 72 bp | ACTAAGTACTTGACTTGTTTGAGGCCAATCTTTTCTTaGCCTATGATGTCCATCAGCCTCCCTGGAGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: TKYLTCLRPIFS*PMMSISLPGVA Trigger: TGCTACTCCAGGGAGGCTGATGGACATCATAGGCAAAGAAAAGATTGGCCTCAAACAAGTCAAGTACTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 72 bp | AATATGTTACACCCTTGTACTATCTGTCGAACTGAATaGCCAAACTGGGTTCCTCCATATATGACCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: NMLHPCTICRTE*PNWVPPYMTTA Trigger: AGCTGTGGTCATATATGGAGGAACCCAGTTTGGTCATTCAGTTCGACAGATAGTACAAGGGTGTAACATATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS TCA 72 bp | ACACAATATGTTACACCCTTGTACTATCTGTCGAACTaGATGACCAAACTGGGTTCCTCCATATATGACCAC | + |
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Preference number: 6 (lower is better) Translates to: TQYVTPLYYLSN*MTKLGSSIYDH Trigger: GTGGTCATATATGGAGGAACCCAGTTTGGTCATTCAGTTCGACAGATAGTACAAGGGTGTAACATATTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CCA 72 bp | AATCTTTTCTTTGCCTATGATGTCCATCAGCCTCCCTaGAGTAGCACACAATATGTTACACCCTTGTACTAT | + |
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Preference number: 6 (lower is better) Translates to: NLFFAYDVHQPP*SSTQYVTPLYY Trigger: ATAGTACAAGGGTGTAACATATTGTGTGCTACTCCAGGGAGGCTGATGGACATCATAGGCAAAGAAAAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CAA 90 bp | TTTCATCACCTATGTTTCGTAGAATCTCAACAAGCTTTTCTCTTTTaGAATACTGGCCAACTTGAAGGATCGTCTGCTGAACATCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: FHHLCFVESQQAFLF*NTGQLEGSSAEHLC Trigger: GCAGAGATGTTCAGCAGACGATCCTTCAAGTTGGCCAGTATTCAAAAAGAGAAAAGCTTGTTGAGATTCTACGAAACATAGGTGATGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS GCA 72 bp | TTCCAAGTAAATTTGGTTGATCAGTTCTCGAGTTGGTaGTACAATAATACACTCTGGTTCCTGCAGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FQVNLVDQFSSW*YNNTLWFLQFF Trigger: AAAGAACTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTCGAGAACTGATCAACCAAATTTACTTGGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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| CDS CAA 72 bp | CTATGTTTCGTAGAATCTCAACAAGCTTTTCTCTTTTaGAATACTGGCCAACTTGAAGGATCGTCTGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: LCFVESQQAFLF*NTGQLEGSSAE Trigger: TTCAGCAGACGATCCTTCAAGTTGGCCAGTATTCAAAAAGAGAAAAGCTTGTTGAGATTCTACGAAACATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075748.7 ENSMUST00000099166.10 |
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