Pregenerated sensors for DDX3Y (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069045Ensembl transcript IDs: ENSMUST00000091190.12, ENSMUST00000188484.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAATCCACCTGCCTCTGCCTCCTGAGTGCTGCAATTAAAGGCGTGTaGCACCACTTCAGGCTGCAAATAGTTTTTCTTAACTATCATTCT | + |
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Preference number: 1 (lower is better) Translates to: KSTCLCLLSAAIKGV*HHFRLQIVFLNYHS Trigger: AGAATGATAGTTAAGAAAAACTATTTGCAGCCTGAAGTGGTGGCACACGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCAGGTGGATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR CAA 90 bp | CCACCAAATCCTCTGTTGTGGCTACTACCACTACTTCGGCTGCTATaGGCACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTC | + |
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Preference number: 2 (lower is better) Translates to: PPNPLLWLLPLLRLL*ARLLLNPAFAEPLL Trigger: GAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGTGCCAATAGCAGCCGAAGTAGTGGTAGTAGCCACAACAGAGGATTTGGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTAAGTCCCGAATCTGCTaGACAGTATCAGCACCACCA | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSKSRIC*TVSAPP Trigger: TGGTGGTGCTGATACTGTTCAGCAGATTCGGGACTT...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCCTGCCTCTGCCTCCTaGGTGCTGCAATTAAAGGCG | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHPASAS*VLQLKA Trigger: CGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCAGG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCCAGTCATCTTCATCTaGTCTGTCACTCCAACGACT | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSPVIFI*SVTPTT Trigger: AGTCGTTGGAGTGACAGATCAGATGAAGATGACTGG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCCTGAGCGAAACTGGTaGAGGGCCTCCTCTCGATCT | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYPERNW*RASSRS Trigger: AGATCGAGAGGAGGCCCTTCACCAGTTTCGCTCAGG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTTCACTCCAACGACTATaGCCACTCCGTTCAAATTTG | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSSLQRL*PLRSNL Trigger: CAAATTTGAACGGAGTGGTCATAGTCGTTGGAGTGA...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATACGAACCCCCTTTGGTaGCATTGTGTCCTGCTCAAC | + |
|
Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYTNPLW*HCVLLN Trigger: GTTGAGCAGGACACAATGCCACCAAAGGGGGTTCGT...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTTGTACTGCAAGTTCTTaGAGCTACACAATACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSCTASS*SYTIQS Trigger: AGACTGTATTGTGTAGCTTCAAGAACTTGCAGTACA...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCACGCATATCTTTCTTaGAATAAGAAGTTCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSHAYLS*NKKFSS Trigger: GCTGGAGAACTTCTTATTTCAAGAAAGATATGCGTG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR GCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTAGTAAAGCCTGCTGCTaGATAATCTGTTCATACTCT | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSSKACC*IICSYS Trigger: AGAGTATGAACAGATTATGCAGCAGCAGGCTTTACT...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR GCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACAAATCCACCTGCCTCTaGCTCCTGAGTGCTGCAATT | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHKSTCL*LLSAAI Trigger: AATTGCAGCACTCAGGAGGCAGAGGCAGGTGGATTT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR GCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATATTCAGAAATCCACCTaGCTCTGCCTCCTGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYIQKST*LCLLSA Trigger: AGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAAT...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR GCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACTCCTGGAACTCACTATaGAGAACAGGCTGGCCACAA | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHSWNSL*RTGWPQ Trigger: TTGTGGCCAGCCTGTTCTGCATAGTGAGTTCCAGGA...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCAACCAAGCAGGAAGTaGATTAATCCAGTTACAAAA | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSQPSRK*INPVTK Trigger: TTTTGTAACTGGATTAATTCACTTCCTGCTTGGTTG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCCATCTCAATATCACTaGAATTTTCAATGTGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: TVTIKSSICRTTALSIVSPSQYH*NFQCEE Trigger: CTCCTCACATTGAAAATTTCAGTGATATTGAGATGG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCAGGTGGCATTGTGTCCTaGTCAACTATACGACGTATT | + |
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Preference number: 2 (lower is better) Translates to: LASTRRSNKSFVMFKFLSGGIVS*STIRRI Trigger: AATACGTCGTATAGTTGAGCAGGACACAATGCCACC...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATAGCATGTTTTTGCACTaGAGTAGGACGAGTGTAACG | + |
|
Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYSMFLH*SRTSVT Trigger: CGTTACACTCGTCCTACTCCAGTGCAAAAACATGCT...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCACTTCAAAGCCTCTCCTaGACCATCTGTATAAATCTG | + |
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Preference number: 2 (lower is better) Translates to: LASTRRSNKSFVMFKFLSLQSLS*TICINL Trigger: CAGATTTATACAGATGGTCCAGGAGAGGCTTTGAAG...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATTGTACTGCAAGTTCTTaGAGCTACACAATACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYCTASS*SYTIQS Trigger: AGACTGTATTGTGTAGCTTCAAGAACTTGCAGTACA...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| 3UTR-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCCATGGAAAATTTTCTaGACCAAGTTCTTGACACAC | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYPWKIF*TKFLTH Trigger: GTGTGTCAAGAACTTGGTTCAGAAAATTTTCCATGG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR GCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACAGTAAAGCCTGCTGCTaGATAATCTGTTCATACTCT | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHSKACC*IICSYS Trigger: AGAGTATGAACAGATTATGCAGCAGCAGGCTTTACT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCAACCAAGCAGGAAGTaGATTAATCCAGTTACAAAA | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHQPSRK*INPVTK Trigger: TTTTGTAACTGGATTAATTCACTTCCTGCTTGGTTG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACTGTTACAGAAAAACCTaGCTGTGTAAAAGTAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHCYRKT*LCKSKA Trigger: GGCTTTACTTTTACACAGTCAGGTTTTTCTGTAACA...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCTGTATAAATCTGACTaGGAATGGGTAGTAGAAATG | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYLYKSD*EWVVEM Trigger: CATTTCTACTACCCATTCTCAGTCAGATTTATACAG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATAAAAGTAAAGCCTGCTaGTGCATAATCTGTTCATAC | + |
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Preference number: 2 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYKSKAC*CIICSY Trigger: GTATGAACAGATTATGCAGCAGCAGGCTTTACTTTT...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| 3UTR-3UTR GCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACAAAATAGATGAAAACTaGACTGTACTGACCATCATG | + |
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Preference number: 2 (lower is better) Translates to: KMRFPTVQACKFTRTLSHKIDEN*TVLTIM Trigger: CATGATGGTCAGTACAGTGCAGTTTTCATCTATTTT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR GCA 72 bp | ACAGGCTGGCCACAAATTCAGAAATCCACCTGCCTCTaGCTCCTGAGTGCTGCAATTAAAGGCGTGTGCCAC | + |
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Preference number: 3 (lower is better) Translates to: TGWPQIQKSTCL*LLSAAIKGVCH Trigger: GTGGCACACGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAATTTGTGGCCAGCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR TCA 72 bp | GGCCACAAATTCAGAAATCCACCTGCCTCTGCCTCCTaGGTGCTGCAATTAAAGGCGTGTGCCACCACTTCA | + |
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Preference number: 3 (lower is better) Translates to: GHKFRNPPASAS*VLQLKACATTS Trigger: TGAAGTGGTGGCACACGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAATTTGTGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR GCA 72 bp | TGCAGAACAGGCTGGCCACAAATTCAGAAATCCACCTaGCTCTGCCTCCTGAGTGCTGCAATTAAAGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: CRTGWPQIQKST*LCLLSAAIKGV Trigger: CACGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAATTTGTGGCCAGCCTGTTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR GCA 72 bp | TGCCTCTGCCTCCTGAGTGCTGCAATTAAAGGCGTGTaGCACCACTTCAGGCTGCAAATAGTTTTTCTTAAC | + |
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Preference number: 3 (lower is better) Translates to: CLCLLSAAIKGV*HHFRLQIVFLN Trigger: GTTAAGAAAAACTATTTGCAGCCTGAAGTGGTGGCACACGCCTTTAATTGCAGCACTCAGGAGGCAGAGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR-3UTR CAA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCCCCCTTTGGTGGCATaGTGTCCTGCTCAACTATAC | + |
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Preference number: 3 (lower is better) Translates to: TVTIKSSICRTTALSIVSPPLVA*CPAQLY Trigger: GTATAGTTGAGCAGGACACAATGCCACCAAAGGGGG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR TCA 72 bp | GCTGTAGGCATCTTTATCTTTACTACAGCTCCATCCTaGACTGTCCTTATCACAGACCCCTTTAGATGTTTC | + |
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Preference number: 3 (lower is better) Translates to: AVGIFIFTTAPS*TVLITDPFRCF Trigger: GAAACATCTAAAGGGGTCTGTGATAAGGACAGTTCAGGATGGAGCTGTAGTAAAGATAAAGATGCCTACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTCTTGTGTGCCAAGGTTaGCTTGTAGCCAAAATTCAA | + |
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Preference number: 3 (lower is better) Translates to: TVTIKSSICRTTALSIVSLVCQG*LVAKIQ Trigger: TTGAATTTTGGCTACAAGCAAACCTTGGCACACAAG...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCCACTCCGTTCAAATTaGCCAAATCCAGTTCGGTCA | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYPLRSN*PNPVRS Trigger: TGACCGAACTGGATTTGGCAAATTTGAACGGAGTGG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCTAACACCAAGGAGATaGGGTATTGTTTACGGCGAC | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYLTPRR*GIVYGD Trigger: GTCGCCGTAAACAATACCCAATCTCCTTGGTGTTAG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCCAAGAAGGCACTTCTaGTTTAGCCTCAACAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYPRRHF*FSLNKE Trigger: CTCCTTGTTGAGGCTAAACAAGAAGTGCCTTCTTGG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCACAAGGAGATTGGGTATaGTTTACGGCGACCATATCT | + |
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Preference number: 3 (lower is better) Translates to: LASTRRSNKSFVMFKFLSQGDWV*FTATIS Trigger: AGATATGGTCGCCGTAAACAATACCCAATCTCCTTG...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCTTGTGTGCCAAGGTTaGCTTGTAGCCAAAATTCAA | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYLVCQG*LVAKIQ Trigger: TTGAATTTTGGCTACAAGCAAACCTTGGCACACAAG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATTTTTTCTCATCAACTTaGAATAGGGCTACAGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYFFSST*NRATGC Trigger: ACAACCTGTAGCCCTATTCAAAGTTGATGAGAAAAA...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCATTTTTCTCATCAACTTaGAATAGGGCTACAGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: LASTRRSNKSFVMFKFLSFFSST*NRATGC Trigger: ACAACCTGTAGCCCTATTCAAAGTTGATGAGAAAAA...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATATGAATCCTTCCCTGTaGCATTTAAGAGATCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYMNPSL*HLRDQV Trigger: TACTTGATCTCTTAAATGCAACAGGGAAGGATTCAT...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| 3UTR TCA 72 bp | TCTATGGTCCATGGAAAATTTTCTGAACCAAGTTCTTaGCACACTGTAATCAACAATATCCAATTGGAACTT | + |
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Preference number: 3 (lower is better) Translates to: SMVHGKFSEPSS*HTVINNIQLEL Trigger: AAGTTCCAATTGGATATTGTTGATTACAGTGTGTCAAGAACTTGGTTCAGAAAATTTTCCATGGACCATAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| 3UTR CAA 72 bp | CCTCTGTTGTGGCTACTACCACTACTTCGGCTGCTATaGGCACGGTTACTATTAAATCCAGCATTTGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLPLLRLL*ARLLLNPAFAE Trigger: TTCTGCAAATGCTGGATTTAATAGTAACCGTGCCAATAGCAGCCGAAGTAGTGGTAGTAGCCACAACAGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| CDS-3UTR CCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACACGAACCCCCTTTGGTaGCATTGTGTCCTGCTCAAC | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHTNPLW*HCVLLN Trigger: GTTGAGCAGGACACAATGCCACCAAAGGGGGTTCGT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | ACGGTTACTATTAAATCCAGCATTTGCAGAACCACTGCTCTGTCGATAGTCTCTTTTCCTCCTCCATTCTaGTTATCTGATGATTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: TVTIKSSICRTTALSIVSFPPPF*LSDDFR Trigger: CCTGAAATCATCAGATAATCAGAATGGAGGAGGAAA...AGAGACTATCGACAGAGCAGTGGTTCTGCAAATGCTGGATTTAATAGTAACCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| CDS-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACAAGTCCCGAATCTGCTaGACAGTATCAGCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHKSRIC*TVSAPP Trigger: TGGTGGTGCTGATACTGTTCAGCAGATTCGGGACTT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCCAGTCATCTTCATCTaGTCTGTCACTCCAACGACT | + |
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Preference number: 4 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYPVIFI*SVTPTT Trigger: AGTCGTTGGAGTGACAGATCAGATGAAGATGACTGG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACTCACTCCAACGACTATaGCCACTCCGTTCAAATTTG | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHSLQRL*PLRSNL Trigger: CAAATTTGAACGGAGTGGTCATAGTCGTTGGAGTGA...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR GCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATGGTGGCATTGTGTCCTaGTCAACTATACGACGTATT | + |
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Preference number: 4 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYGGIVS*STIRRI Trigger: AATACGTCGTATAGTTGAGCAGGACACAATGCCACC...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACAGCATGTTTTTGCACTaGAGTAGGACGAGTGTAACG | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHSMFLH*SRTSVT Trigger: CGTTACACTCGTCCTACTCCAGTGCAAAAACATGCT...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCTTCAAAGCCTCTCCTaGACCATCTGTATAAATCTG | + |
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Preference number: 4 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYLQSLS*TICINL Trigger: CAGATTTATACAGATGGTCCAGGAGAGGCTTTGAAG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATTTTCCTCCTCCATTCTaGTTATCTGATGATTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYFPPPF*LSDDFR Trigger: CCTGAAATCATCAGATAATCAGAATGGAGGAGGAAA...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| CDS-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCACGCATATCTTTCTTaGAATAAGAAGTTCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHHAYLS*NKKFSS Trigger: GCTGGAGAACTTCTTATTTCAAGAAAGATATGCGTG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCCATCTCAATATCACTaGAATTTTCAATGTGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHPSQYH*NFQCEE Trigger: CTCCTCACATTGAAAATTTCAGTGATATTGAGATGG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR TCA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCTGTATAAATCTGACTaGGAATGGGTAGTAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: KMRFPTVQACKFTRTLSHLYKSD*EWVVEM Trigger: CATTTCTACTACCCATTCTCAGTCAGATTTATACAG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR GCA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCAAGACAAAATGTAAAATaGTCTCTGTATTTCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LASTRRSNKSFVMFKFLSRQNVK*SLYFLL Trigger: GAGGAGGAAATACAGAGAGCATTTTACATTTTGTCT...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| CDS-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATGTCAAGACCAACAAATaGCTGGTCCAGGCCGGCCGT | + |
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Preference number: 5 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYVKTNK*LVQAGR Trigger: ACGGCCGGCCTGGACCAGCAATTTGTTGGTCTTGAC...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091190.12 ENSMUST00000188484.2 |
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| CDS-3UTR CAA 90 bp | TTAGCCTCAACAAGGAGATCTAACAAATCTTTTGTGATGTTCAAATTCCTCTCAGTCAAGACCAACAAATaGCTGGTCCAGGCCGGCCGT | + |
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Preference number: 5 (lower is better) Translates to: LASTRRSNKSFVMFKFLSVKTNK*LVQAGR Trigger: ACGGCCGGCCTGGACCAGCAATTTGTTGGTCTTGAC...TGAGAGGAATTTGAACATCACAAAAGATTTGTTAGATCTCCTTGTTGAGGCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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| CDS-3UTR CAA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCCCCCTTTGGTGGCATaGTGTCCTGCTCAACTATAC | + |
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Preference number: 5 (lower is better) Translates to: KMRFPTVQACKFTRTLSHPPLVA*CPAQLY Trigger: GTATAGTTGAGCAGGACACAATGCCACCAAAGGGGG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CAA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCCACTCCGTTCAAATTaGCCAAATCCAGTTCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: KMRFPTVQACKFTRTLSHPLRSN*PNPVRS Trigger: TGACCGAACTGGATTTGGCAAATTTGAACGGAGTGG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CAA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCTAACACCAAGGAGATaGGGTATTGTTTACGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: KMRFPTVQACKFTRTLSHLTPRR*GIVYGD Trigger: GTCGCCGTAAACAATACCCAATCTCCTTGGTGTTAG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CAA 90 bp | AAAATGAGATTTCCAACAGTTCAAGCATGCAAGTTCACAAGAACATTAAGTCACCCAAGAAGGCACTTCTaGTTTAGCCTCAACAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: KMRFPTVQACKFTRTLSHPRRHF*FSLNKE Trigger: CTCCTTGTTGAGGCTAAACAAGAAGTGCCTTCTTGG...GTGACTTAATGTTCTTGTGAACTTGCATGCTTGAACTGTTGGAAATCTCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS-3UTR CAA 90 bp | GTTCTAAGTGTCAATGCAGGATATAGTGAGCAGTTCAGAACTTTAGTTTTGTATCAAGGAGATTGGGTATaGTTTACGGCGACCATATCT | + |
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Preference number: 5 (lower is better) Translates to: VLSVNAGYSEQFRTLVLYQGDWV*FTATIS Trigger: AGATATGGTCGCCGTAAACAATACCCAATCTCCTTG...ATACAAAACTAAAGTTCTGAACTGCTCACTATATCCTGCATTGACACTTAGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091190.12 |
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| CDS TCA 72 bp | AAATGTAAAATGCTCTCTGTATTTCCTCCTCCATTCTaGTTATCTGATGATTTCAGGTCAAGACCAACAAAT | + |
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Preference number: 6 (lower is better) Translates to: KCKMLSVFPPPF*LSDDFRSRPTN Trigger: ATTTGTTGGTCTTGACCTGAAATCATCAGATAATCAGAATGGAGGAGGAAATACAGAGAGCATTTTACATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188484.2 |
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