RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDX28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045538

Ensembl transcript IDs: ENSMUST00000058579.7

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCCTCAATGTCGCCCACTaGCAAGTGTTCAACTTCCTG +
Preference number: 2 (lower is better)
Translates to: STLFSERYFPILSSSLLFLNVAH*QVFNFL
Trigger: CAGGAAGTTGAACACTTGTCAGTGGGCGACATTGAG...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCCCCAACGGCCCAGCGTaGGGCGTGCGGGCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFPNGPA*GVRAGS
Trigger: TGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGG...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAGTGAGGCGTGCGGGCTaGTTCAACTCCGGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQVRRAG*FNSGRR
Trigger: GCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCAC...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCGCCACGGGAAGCCAGTaGCGCTCGCTCCCAACGGCC +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFATGSQ*RSLPTA
Trigger: GGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGTGGC...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAATCGGGGACAGCCTCCTaGAGCGCCAGCAGCACTCGG +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQSGTAS*SASSTR
Trigger: CCGAGTGCTGCTGGCGCTTCAGGAGGCTGTCCCCGA...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAGCCCAGCGTGAGGCGTaGGGGCTGGTTCAACTCCGG +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPAQREA*GLVQLR
Trigger: CCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGC...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACCAGGTCCACGAAGCTaGCCCGGGACGAGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPPGPRS*PGTRGS
Trigger: GGAACCTCTCGTCCCGGGGCAGCTTCGTGGACCTGG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACAAGTACCCACCCAGTaGCTGGGCCACTGCCTGCAC +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPQVPTQ*LGHCLH
Trigger: GTGCAGGCAGTGGCCCAGTCACTGGGTGGGTACTTG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCATACCCACCCAGTGACTaGGCCACTGCCTGCACCTGT +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPYPPSD*ATACTC
Trigger: ACAGGTGCAGGCAGTGGCCCAGTCACTGGGTGGGTA...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCGATACCTGCCCTCATTaGGGCCGGCATTTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFDTCPH*GRHLPL
Trigger: CAAGGGCAAATGCCGGCCTCAATGAGGGCAGGTATC...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAGACTGGGCCACTGCCTaGACCTGTTCGGCTAGTTCT +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPDWATA*TCSASS
Trigger: AGAACTAGCCGAACAGGTGCAGGCAGTGGCCCAGTC...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACCAAGTTCTATCACCTaGAGGCCCAAGTACCCACCC +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPPSSIT*RPKYPP
Trigger: GGGTGGGTACTTGGGCCTGCAGGTGATAGAACTTGG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCGGCCTTCTGGAAACGTaGCTCCCACCAGCACTAACT +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFGLLET*LPPALT
Trigger: AGTTAGTGCTGGTGGGAGCCACGTTTCCAGAAGGCC...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAGGTTTTCGACTGCACTaGGGTTGGCTGCACAACTTC +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQGFRLH*GWLHNF
Trigger: GAAGTTGTGCAGCCAACCTCAGTGCAGTCGAAAACC...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAACGACCCACCCTTCCTaGTCTGTGGATGTAATCCTG +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQTTHPS*SVDVIL
Trigger: CAGGATTACATCCACAGAGCAGGAAGGGTGGGTCGT...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAACCCACCAGCACTAACTaGGCTTTGGGATTAAAGGGG +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQPTSTN*ALGLKG
Trigger: CCCCTTTAATCCCAAAGCCCAGTTAGTGCTGGTGGG...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCGCCAGTTCAATTTTCTaGACCAGGCTCACATCCCAG +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFASSIF*TRLTSQ
Trigger: CTGGGATGTGAGCCTGGTTCAGAAAATTGAACTGGC...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAACTCACATCCCAGGGGTaGGTCACAAAACTGATAACG +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQLTSQG*VTKLIT
Trigger: CGTTATCAGTTTTGTGACCCACCCCTGGGATGTGAG...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAGACTGTCTGGACTGGTaGCTTTACTCAGTAACTGGT +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQDCLDW*LYSVTG
Trigger: ACCAGTTACTGAGTAAAGTCACCAGTCCAGACAGTC...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACTTTGTCCTGCTGTTTaGGGATCTGAACCAGTTCTG +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPLCPAV*GSEPVL
Trigger: CAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACTCGGCTGGACTTTCTaGTATAGGGCTCTTTTCCAA +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPLGWTF*YRALFQ
Trigger: TTGGAAAAGAGCCCTATAGCAGAAAGTCCAGCCGAG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCATCTCCTTCGGCGAGCTaGCAGTTCAATTTTCTGAAC +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPSPSAS*QFNFLN
Trigger: GTTCAGAAAATTGAACTGGCAGCTCGCCGAAGGAGA...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCACCCTTCTGGAAACTCTaGAAGATACCTGCCCTCATT +
Preference number: 4 (lower is better)
Translates to: FSERYFPILSSSLLFKSPPFWKL*KIPALI
Trigger: AATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGG...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCTTCTGGGAGCCCTTCTaGAAACTCTGGAAGATACCT +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFFWEPF*KLWKIP
Trigger: AGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAA...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAACAGACAAGTATGTTCTaGGAGCCCTTCTGGAAACTC +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQQTSMF*EPFWKL
Trigger: GAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTG...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR TCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAATGCAGCCTTAGATGTTaGATCTTGTGGTCATCCAGA +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQCSLRC*ILWSSR
Trigger: TCTGGATGACCACAAGATTCAACATCTAAGGCTGCA...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR GCA 90 bp TCCACTTTATTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCTTCTGTCACCTTGTCTaGTCCCTTCAGTCTCATAAA +
Preference number: 4 (lower is better)
Translates to: STLFSERYFPILSSSLLFFCHLV*SLQSHK
Trigger: TTTATGAGACTGAAGGGAGCAGACAAGGTGACAGAA...GAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAATAAAGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CCA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAACTTTACTCAGTAACTaGTTTAGGCCTTCTGGAAAC +
Preference number: 4 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQTLLSN*FRPSGN
Trigger: GTTTCCAGAAGGCCTAAACCAGTTACTGAGTAAAGT...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp GCCAGTGGCGCTCGCTCCCAACGGCCCAGCGTGAGGCGTGCGGGCTaGTTCAACTCCGGCCGCCGCGCCGAGACCAGCAGGGGACCGGGG +
Preference number: 5 (lower is better)
Translates to: ASGARSQRPSVRRAG*FNSGRRAETSRGPG
Trigger: CCCCGGTCCCCTGCTGGTCTCGGCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp ACGGGAAGCCAGTGGCGCTCGCTCCCAACGGCCCAGCGTGAGGCGTaGGGGCTGGTTCAACTCCGGCCGCCGCGCCGAGACCAGCAGGGG +
Preference number: 5 (lower is better)
Translates to: TGSQWRSLPTAQREA*GLVQLRPPRRDQQG
Trigger: CCCCTGCTGGTCTCGGCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp TCCAGCCACGGGAAGCCAGTGGCGCTCGCTCCCAACGGCCCAGCGTaGGGCGTGCGGGCTGGTTCAACTCCGGCCGCCGCGCCGAGACCA +
Preference number: 5 (lower is better)
Translates to: SSHGKPVALAPNGPA*GVRAGSTPAAAPRP
Trigger: TGGTCTCGGCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGTGGCTGGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp CGCGCCGAGACCAGCAGGGGACCGGGGCGCACTAGCACTGGCCGCTaGAAACTCCCACGGCCGCTCTGTCGCTGTTCCTGCCGTCGCTGC +
Preference number: 5 (lower is better)
Translates to: RAETSRGPGRTSTGR*KLPRPLCRCSCRRC
Trigger: GCAGCGACGGCAGGAACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCGGCCAGTGCTAGTGCGCCCCGGTCCCCTGCTGGTCTCGGCGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp AGCACTGGCCGCTGCAAACTCCCACGGCCGCTCTGTCGCTGTTCCTaGCGTCGCTGCAGAGCCCGCGGAACGCGCACCACTGGCAAGGAC +
Preference number: 5 (lower is better)
Translates to: STGRCKLPRPLCRCS*RRCRARGTRTTGKD
Trigger: GTCCTTGCCAGTGGTGCGCGTTCCGCGGGCTCTGCAGCGACGGCAGGAACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCGGCCAGTGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp ATGGTCTTGCCGCGATCGCCGATGCTTCCAGCCACGGGAAGCCAGTaGCGCTCGCTCCCAACGGCCCAGCGTGAGGCGTGCGGGCTGGTT +
Preference number: 5 (lower is better)
Translates to: MVLPRSPMLPATGSQ*RSLPTAQREACGLV
Trigger: AACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGTGGCTGGAAGCATCGGCGATCGCGGCAAGACCAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp CGCTGCAAACTCCCACGGCCGCTCTGTCGCTGTTCCTGCCGTCGCTaGAGAGCCCGCGGAACGCGCACCACTGGCAAGGACTGGTCGGAA +
Preference number: 5 (lower is better)
Translates to: RCKLPRPLCRCSCRR*RARGTRTTGKDWSE
Trigger: TTCCGACCAGTCCTTGCCAGTGGTGCGCGTTCCGCGGGCTCTGCAGCGACGGCAGGAACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp TGCTGCACTCGCTCTATGGAGAAATGGTCTTGCCGCGATCGCCGATaGTTCCAGCCACGGGAAGCCAGTGGCGCTCGCTCCCAACGGCCC +
Preference number: 5 (lower is better)
Translates to: CCTRSMEKWSCRDRR*FQPREASGARSQRP
Trigger: GGGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGTGGCTGGAAGCATCGGCGATCGCGGCAAGACCATTTCTCCATAGAGCGAGTGCAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp TTCGACTGCACTGAGGTTGGCTGCACAACTTCGGGGACAGCCTCCTaGAGCGCCAGCAGCACTCGGGGTTCCAGACCCAGGTCCACGAAG +
Preference number: 5 (lower is better)
Translates to: FDCTEVGCTTSGTAS*SASSTRGSRPRSTK
Trigger: CTTCGTGGACCTGGGTCTGGAACCCCGAGTGCTGCTGGCGCTTCAGGAGGCTGTCCCCGAAGTTGTGCAGCCAACCTCAGTGCAGTCGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp CGGCTAGTTCTCGGGAAGGTACCAGAACCAAGCCTCGAGGAGCCGTaGAACTGCGGGAGTCCAGGTCTGACCCTCTCAGGAGCCGCTGAA +
Preference number: 5 (lower is better)
Translates to: RLVLGKVPEPSLEEP*NCGSPGLTLSGAAE
Trigger: TTCAGCGGCTCCTGAGAGGGTCAGACCTGGACTCCCGCAGTTTCACGGCTCCTCGAGGCTTGGTTCTGGTACCTTCCCGAGAACTAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp ATCACCTGCAGGCCCAAGTACCCACCCAGTGACTGGGCCACTGCCTaGACCTGTTCGGCTAGTTCTCGGGAAGGTACCAGAACCAAGCCT +
Preference number: 5 (lower is better)
Translates to: ITCRPKYPPSDWATA*TCSASSREGTRTKP
Trigger: AGGCTTGGTTCTGGTACCTTCCCGAGAACTAGCCGAACAGGTGCAGGCAGTGGCCCAGTCACTGGGTGGGTACTTGGGCCTGCAGGTGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp CGGGAGGCGATGTCTGTGCAGACAAGTATGTTCTGGGAGCCCTTCTaGAAACTCTGGAAGATACCTGCCCTCATTGAGGCCGGCATTTGC +
Preference number: 5 (lower is better)
Translates to: REAMSVQTSMFWEPF*KLWKIPALIEAGIC
Trigger: GCAAATGCCGGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTGCACAGACATCGCCTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp GGTCATCCAGAATGTACCCAAGCCAGTTCACGGTGCTGGCGCTGTTaGAGAATACCAGGACAGTTCCCGAGGGTTCCGTCTTACTTGCTT +
Preference number: 5 (lower is better)
Translates to: GHPECTQASSRCWRC*RIPGQFPRVPSYLL
Trigger: AAGCAAGTAAGACGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp GTTGAATCTTGTGGTCATCCAGAATGTACCCAAGCCAGTTCACGGTaGTGGCGCTGTTGCAGAATACCAGGACAGTTCCCGAGGGTTCCG +
Preference number: 5 (lower is better)
Translates to: VESCGHPECTQASSR*WRCCRIPGQFPRVP
Trigger: CGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACCACAAGATTCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp GAATCTTGTGGTCATCCAGAATGTACCCAAGCCAGTTCACGGTGCTaGCGCTGTTGCAGAATACCAGGACAGTTCCCGAGGGTTCCGTCT +
Preference number: 5 (lower is better)
Translates to: ESCGHPECTQASSRC*RCCRIPGQFPRVPS
Trigger: AGACGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACCACAAGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp CTGTCTAGGCCTCGGGAGGCGATGTCTGTGCAGACAAGTATGTTCTaGGAGCCCTTCTGGAAACTCTGGAAGATACCTGCCCTCATTGAG +
Preference number: 5 (lower is better)
Translates to: LSRPREAMSVQTSMF*EPFWKLWKIPALIE
Trigger: CTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTGCACAGACATCGCCTCCCGAGGCCTAGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp GGACAGTTCCCGAGGGTTCCGTCTTACTTGCTTTGTCCTGCTGTTTaGGGATCTGAACCAGTTCTGTCACCTTGTCTGCTCCCTTCAGTC +
Preference number: 5 (lower is better)
Translates to: GQFPRVPSYLLCPAV*GSEPVLSPCLLPSV
Trigger: GACTGAAGGGAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAGCAAGTAAGACGGAACCCTCGGGAACTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 90 bp AACTGGTTTAGGCCTTCTGGAAACGTGGCTCCCACCAGCACTAACTaGGCTTTGGGATTAAAGGGGTCTTCTAACTCGGCTGGACTTTCT +
Preference number: 5 (lower is better)
Translates to: NWFRPSGNVAPTSTN*ALGLKGSSNSAGLS
Trigger: AGAAAGTCCAGCCGAGTTAGAAGACCCCTTTAATCCCAAAGCCCAGTTAGTGCTGGTGGGAGCCACGTTTCCAGAAGGCCTAAACCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp GTCACCTTGTCTGCTCCCTTCAGTCTCATAAATGTCTGTCTGACATaGGGCATGAGACAGTGCAGCTTGGAGCTGGTAATGGTGGTCAGA +
Preference number: 5 (lower is better)
Translates to: VTLSAPFSLINVCLT*GMRQCSLELVMVVR
Trigger: TCTGACCACCATTACCAGCTCCAAGCTGCACTGTCTCATGCCTCATGTCAGACAGACATTTATGAGACTGAAGGGAGCAGACAAGGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp CCCGAGGGTTCCGTCTTACTTGCTTTGTCCTGCTGTTTGAGGATCTaGACCAGTTCTGTCACCTTGTCTGCTCCCTTCAGTCTCATAAAT +
Preference number: 5 (lower is better)
Translates to: PEGSVLLALSCCLRI*TSSVTLSAPFSLIN
Trigger: ATTTATGAGACTGAAGGGAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAGCAAGTAAGACGGAACCCTCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 90 bp ACTTCATCTAGCACTATGAAGTTAAGATGCTGTAAGCTGATCAGTTaGCTTTTCAGAGCCTTCCACAGCGCCCCTGGAGTAGCCACTAAC +
Preference number: 5 (lower is better)
Translates to: TSSSTMKLRCCKLIS*LFRAFHSAPGVATN
Trigger: GTTAGTGGCTACTCCAGGGGCGCTGTGGAAGGCTCTGAAAAGTCAACTGATCAGCTTACAGCATCTTAACTTCATAGTGCTAGATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 90 bp TTTGTCCTGCTGTTTGAGGATCTGAACCAGTTCTGTCACCTTGTCTaGTCCCTTCAGTCTCATAAATGTCTGTCTGACATGAGGCATGAG +
Preference number: 5 (lower is better)
Translates to: FVLLFEDLNQFCHLV*SLQSHKCLSDMRHE
Trigger: CTCATGCCTCATGTCAGACAGACATTTATGAGACTGAAGGGAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CAA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAATCGACTGCACTGAGGTaGGCTGCACAACTTCGGGGA +
Preference number: 5 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQSTALR*AAQLRG
Trigger: TCCCCGAAGTTGTGCAGCCAACCTCAGTGCAGTCGA...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CAA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAAGATACCTGCCCTCATaGAGGCCGGCATTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQRYLPS*RPAFAL
Trigger: AAGGGCAAATGCCGGCCTCAATGAGGGCAGGTATCT...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CAA 90 bp TTTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAACCAGTTCTGTCACCTaGTCTGCTCCCTTCAGTCTC +
Preference number: 5 (lower is better)
Translates to: FSERYFPILSSSLLFKSPTSSVT*SAPFSL
Trigger: GAGACTGAAGGGAGCAGACAAGGTGACAGAACTGGT...TGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS-3UTR CAA 90 bp TTTCTGAACGTTACTTTCCAATCCTGTCCAGTAGTTTACTTTTCAAATCTCCAAAGCACTAACTGGGCTTaGGGATTAAAGGGGTCTTCT +
Preference number: 5 (lower is better)
Translates to: FLNVTFQSCPVVYFSNLQSTNWA*GLKGSS
Trigger: AGAAGACCCCTTTAATCCCAAAGCCCAGTTAGTGCT...TTGGAGATTTGAAAAGTAAACTACTGGACAGGATTGGAAAGTAACGTTCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp GGGAAGCCAGTGGCGCTCGCTCCCAACGGCCCAGCGTaGGGCGTGCGGGCTGGTTCAACTCCGGCCGCCGCG +
Preference number: 6 (lower is better)
Translates to: GKPVALAPNGPA*GVRAGSTPAAA
Trigger: CGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTTCCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp CAGTGGCGCTCGCTCCCAACGGCCCAGCGTGAGGCGTaGGGGCTGGTTCAACTCCGGCCGCCGCGCCGAGAC +
Preference number: 6 (lower is better)
Translates to: QWRSLPTAQREA*GLVQLRPPRRD
Trigger: GTCTCGGCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp GCTCGCTCCCAACGGCCCAGCGTGAGGCGTGCGGGCTaGTTCAACTCCGGCCGCCGCGCCGAGACCAGCAGG +
Preference number: 6 (lower is better)
Translates to: ARSQRPSVRRAG*FNSGRRAETSR
Trigger: CCTGCTGGTCTCGGCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp CCGCGATCGCCGATGCTTCCAGCCACGGGAAGCCAGTaGCGCTCGCTCCCAACGGCCCAGCGTGAGGCGTGC +
Preference number: 6 (lower is better)
Translates to: PRSPMLPATGSQ*RSLPTAQREAC
Trigger: GCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTTCCCGTGGCTGGAAGCATCGGCGATCGCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp CTCCCACGGCCGCTCTGTCGCTGTTCCTGCCGTCGCTaGAGAGCCCGCGGAACGCGCACCACTGGCAAGGAC +
Preference number: 6 (lower is better)
Translates to: LPRPLCRCSCRR*RARGTRTTGKD
Trigger: GTCCTTGCCAGTGGTGCGCGTTCCGCGGGCTCTGCAGCGACGGCAGGAACAGCGACAGAGCGGCCGTGGGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp GCAGCACTCGGGGTTCCAGACCCAGGTCCACGAAGCTaGCCCGGGACGAGAGGTTCCTCAGGGCGGGCGCCT +
Preference number: 6 (lower is better)
Translates to: AALGVPDPGPRS*PGTRGSSGRAP
Trigger: AGGCGCCCGCCCTGAGGAACCTCTCGTCCCGGGGCAGCTTCGTGGACCTGGGTCTGGAACCCCGAGTGCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp CGCTGCAAACTCCCACGGCCGCTCTGTCGCTGTTCCTaGCGTCGCTGCAGAGCCCGCGGAACGCGCACCACT +
Preference number: 6 (lower is better)
Translates to: RCKLPRPLCRCS*RRCRARGTRTT
Trigger: AGTGGTGCGCGTTCCGCGGGCTCTGCAGCGACGGCAGGAACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp ACCAGCAGGGGACCGGGGCGCACTAGCACTGGCCGCTaGAAACTCCCACGGCCGCTCTGTCGCTGTTCCTGC +
Preference number: 6 (lower is better)
Translates to: TSRGPGRTSTGR*KLPRPLCRCSC
Trigger: GCAGGAACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCGGCCAGTGCTAGTGCGCCCCGGTCCCCTGCTGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp CTCGGGAAGGTACCAGAACCAAGCCTCGAGGAGCCGTaGAACTGCGGGAGTCCAGGTCTGACCCTCTCAGGA +
Preference number: 6 (lower is better)
Translates to: LGKVPEPSLEEP*NCGSPGLTLSG
Trigger: TCCTGAGAGGGTCAGACCTGGACTCCCGCAGTTTCACGGCTCCTCGAGGCTTGGTTCTGGTACCTTCCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp AGGCCCAAGTACCCACCCAGTGACTGGGCCACTGCCTaGACCTGTTCGGCTAGTTCTCGGGAAGGTACCAGA +
Preference number: 6 (lower is better)
Translates to: RPKYPPSDWATA*TCSASSREGTR
Trigger: TCTGGTACCTTCCCGAGAACTAGCCGAACAGGTGCAGGCAGTGGCCCAGTCACTGGGTGGGTACTTGGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp ATCCCAGGGGTGGGTCACAAAACTGATAACGGACCCTaGCACTTCGCTGCCCACACGACCCACCCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: IPGVGHKTDNGP*HFAAHTTHPSC
Trigger: GCAGGAAGGGTGGGTCGTGTGGGCAGCGAAGTGCCAGGGTCCGTTATCAGTTTTGTGACCCACCCCTGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp GAATGTACCCAAGCCAGTTCACGGTGCTGGCGCTGTTaGAGAATACCAGGACAGTTCCCGAGGGTTCCGTCT +
Preference number: 6 (lower is better)
Translates to: ECTQASSRCWRC*RIPGQFPRVPS
Trigger: AGACGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp CGTGGACACTGTCTAGGCCTCGGGAGGCGATGTCTGTaGAGACAAGTATGTTCTGGGAGCCCTTCTGGAAAC +
Preference number: 6 (lower is better)
Translates to: RGHCLGLGRRCL*RQVCSGSPSGN
Trigger: GTTTCCAGAAGGGCTCCCAGAACATACTTGTCTGCACAGACATCGCCTCCCGAGGCCTAGACAGTGTCCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp GGTCATCCAGAATGTACCCAAGCCAGTTCACGGTGCTaGCGCTGTTGCAGAATACCAGGACAGTTCCCGAGG +
Preference number: 6 (lower is better)
Translates to: GHPECTQASSRC*RCCRIPGQFPR
Trigger: CCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CAA 72 bp AGAATGTACCCAAGCCAGTTCACGGTGCTGGCGCTGTaGCAGAATACCAGGACAGTTCCCGAGGGTTCCGTC +
Preference number: 6 (lower is better)
Translates to: RMYPSQFTVLAL*QNTRTVPEGSV
Trigger: GACGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS GCA 72 bp TGTGGTCATCCAGAATGTACCCAAGCCAGTTCACGGTaGTGGCGCTGTTGCAGAATACCAGGACAGTTCCCG +
Preference number: 6 (lower is better)
Translates to: CGHPECTQASSR*WRCCRIPGQFP
Trigger: CGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp CCTCGGGAGGCGATGTCTGTGCAGACAAGTATGTTCTaGGAGCCCTTCTGGAAACTCTGGAAGATACCTGCC +
Preference number: 6 (lower is better)
Translates to: PREAMSVQTSMF*EPFWKLWKIPA
Trigger: GGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTGCACAGACATCGCCTCCCGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CAA 90 bp TGGTCATCCAGAATGTACCCAAGCCAGTTCACGGTGCTGGCGCTGTaGCAGAATACCAGGACAGTTCCCGAGGGTTCCGTCTTACTTGCT +
Preference number: 6 (lower is better)
Translates to: WSSRMYPSQFTVLAL*QNTRTVPEGSVLLA
Trigger: AGCAAGTAAGACGGAACCCTCGGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp AGGCTTCTCCTTCGGCGAGCTGCCAGTTCAATTTTCTaGACCAGGCTCACATCCCAGGGGTGGGTCACAAAA +
Preference number: 6 (lower is better)
Translates to: RLLLRRAASSIF*TRLTSQGWVTK
Trigger: TTTTGTGACCCACCCCTGGGATGTGAGCCTGGTTCAGAAAATTGAACTGGCAGCTCGCCGAAGGAGAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp AGGCCTTCTGGAAACGTGGCTCCCACCAGCACTAACTaGGCTTTGGGATTAAAGGGGTCTTCTAACTCGGCT +
Preference number: 6 (lower is better)
Translates to: RPSGNVAPTSTN*ALGLKGSSNSA
Trigger: AGCCGAGTTAGAAGACCCCTTTAATCCCAAAGCCCAGTTAGTGCTGGTGGGAGCCACGTTTCCAGAAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp GTCAGACTGTCTGGACTGGTGACTTTACTCAGTAACTaGTTTAGGCCTTCTGGAAACGTGGCTCCCACCAGC +
Preference number: 6 (lower is better)
Translates to: VRLSGLVTLLSN*FRPSGNVAPTS
Trigger: GCTGGTGGGAGCCACGTTTCCAGAAGGCCTAAACCAGTTACTGAGTAAAGTCACCAGTCCAGACAGTCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp CAGACAAGTATGTTCTGGGAGCCCTTCTGGAAACTCTaGAAGATACCTGCCCTCATTGAGGCCGGCATTTGC +
Preference number: 6 (lower is better)
Translates to: QTSMFWEPFWKL*KIPALIEAGIC
Trigger: GCAAATGCCGGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CAA 72 bp AGCCCTTCTGGAAACTCTGGAAGATACCTGCCCTCATaGAGGCCGGCATTTGCCCTTGCAGCCTTAGATGTT +
Preference number: 6 (lower is better)
Translates to: SPSGNSGRYLPS*RPAFALAALDV
Trigger: AACATCTAAGGCTGCAAGGGCAAATGCCGGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CAA 90 bp TGTTCTGGGAGCCCTTCTGGAAACTCTGGAAGATACCTGCCCTCATaGAGGCCGGCATTTGCCCTTGCAGCCTTAGATGTTGAATCTTGT +
Preference number: 6 (lower is better)
Translates to: CSGSPSGNSGRYLPS*RPAFALAALDVESC
Trigger: ACAAGATTCAACATCTAAGGCTGCAAGGGCAAATGCCGGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp CCGAGGGTTCCGTCTTACTTGCTTTGTCCTGCTGTTTaGGGATCTGAACCAGTTCTGTCACCTTGTCTGCTC +
Preference number: 6 (lower is better)
Translates to: PRVPSYLLCPAV*GSEPVLSPCLL
Trigger: GAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAGCAAGTAAGACGGAACCCTCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS CCA 72 bp ATGTCTGTGCAGACAAGTATGTTCTGGGAGCCCTTCTaGAAACTCTGGAAGATACCTGCCCTCATTGAGGCC +
Preference number: 6 (lower is better)
Translates to: MSVQTSMFWEPF*KLWKIPALIEA
Trigger: GGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCCAGAAGGGCTCCCAGAACATACTTGTCTGCACAGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp TCTGCTCCCTTCAGTCTCATAAATGTCTGTCTGACATaGGGCATGAGACAGTGCAGCTTGGAGCTGGTAATG +
Preference number: 6 (lower is better)
Translates to: SAPFSLINVCLT*GMRQCSLELVM
Trigger: CATTACCAGCTCCAAGCTGCACTGTCTCATGCCTCATGTCAGACAGACATTTATGAGACTGAAGGGAGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp TCCGTCTTACTTGCTTTGTCCTGCTGTTTGAGGATCTaGACCAGTTCTGTCACCTTGTCTGCTCCCTTCAGT +
Preference number: 6 (lower is better)
Translates to: SVLLALSCCLRI*TSSVTLSAPFS
Trigger: ACTGAAGGGAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAGCAAGTAAGACGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7
CDS TCA 72 bp AGCACTATGAAGTTAAGATGCTGTAAGCTGATCAGTTaGCTTTTCAGAGCCTTCCACAGCGCCCCTGGAGTA +
Preference number: 6 (lower is better)
Translates to: STMKLRCCKLIS*LFRAFHSAPGV
Trigger: TACTCCAGGGGCGCTGTGGAAGGCTCTGAAAAGTCAACTGATCAGCTTACAGCATCTTAACTTCATAGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058579.7