RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDX24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041645

Ensembl transcript IDs: ENSMUST00000044923.15, ENSMUST00000110001.4, ENSMUST00000220975.2, ENSMUST00000221211.2, ENSMUST00000222782.2, ENSMUST00000223233.2

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGTGCGCAGGTGGATGGTaGAGTGAAAGGCAAGGAGGG +
Preference number: 2 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGCAGGW*SERQGG
Trigger: CCCTCCTTGCCTTTCACTCCACCATCCACCTGCGCA...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
3UTR-3UTR CCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCTGCGCAGGTGGATGGTaGAGTGAAAGGCAAGGAGGG +
Preference number: 2 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSCAGGW*SERQGG
Trigger: CCCTCCTTGCCTTTCACTCCACCATCCACCTGCGCA...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
3UTR-3UTR CCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACATTTCCTGCTAAAGGATaGAAGAGCGGGAGGTTTGCG +
Preference number: 2 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTFPAKG*KSGRFA
Trigger: CGCAAACCTCCCGCTCTTCCATCCTTTAGCAGGAAA...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
3UTR CCA 72 bp AGGATGGAAGAGCGGGAGGTTTGCGCAGGTGGATGGTaGAGTGAAAGGCAAGGAGGGAAGCCTTTACAGACA +
Preference number: 3 (lower is better)
Translates to: RMEEREVCAGGW*SERQGGKPLQT
Trigger: TGTCTGTAAAGGCTTCCCTCCTTGCCTTTCACTCCACCATCCACCTGCGCAAACCTCCCGCTCTTCCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
3UTR CCA 72 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATaGAAGAGCGGGAGGTTTGCGCAGGTGGATGGTGGA +
Preference number: 3 (lower is better)
Translates to: TTCVREVFPAKG*KSGRFAQVDGG
Trigger: TCCACCATCCACCTGCGCAAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
3UTR TCA 72 bp GATCTGTTCCTAGTCATGGAGTCCAAGGGCTGTCCATaGGGCTGTCAGACAGACAAGAAAGGCCCAAGGTAT +
Preference number: 3 (lower is better)
Translates to: DLFLVMESKGCP*GCQTDKKGPRY
Trigger: ATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGCCCTTGGACTCCATGACTAGGAACAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTGCAGTGACTTCTCCCTaGGCCTCTGGCTCGGACGCT +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSAVTSP*ASGSDA
Trigger: AGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGC...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAGCAGTGACTTCTCCCTaGGCCTCTGGCTCGGACGCT +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRAVTSP*ASGSDA
Trigger: AGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGC...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTGAGGCCAGCACAGGCTaGGGCGGCCTGCCAGACTGT +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFEASTG*GGLPDC
Trigger: ACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCTC...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTGCTCGGCCCCACCTTaGCAAGGTGAAGGGAACGTC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVCSAPP*QGEGNV
Trigger: GACGTTCCCTTCACCTTGTCAAGGTGGGGCCGAGCA...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTGCGCAGACGAGCAGTGTCTaGGCTGAGGCAGAGGCACTA +
Preference number: 4 (lower is better)
Translates to: TCVREVFPAKGWKSGRFAQTSSV*AEAEAL
Trigger: TAGTGCCTCTGCCTCAGCCCAGACACTGCTCGTCTG...CGCAAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTCAATCAGCATCAAGCTaGGGCCTTCACTGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSQSASS*GLHWQR
Trigger: GCGCTGCCAGTGAAGGCCTCAGCTTGATGCTGATTG...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp GGCCCATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTCAATCAGCATCAAGCTaGGGCCTTCACTGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: GPYRSSSHRTRKGNLAAPQSASS*GLHWQR
Trigger: GCGCTGCCAGTGAAGGCCTCAGCTTGATGCTGATTG...AGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACGCCACAGCATCGATGTaGTGTCTGACCTGGATGGCC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYATASM*CLTWMA
Trigger: GGCCATCCAGGTCAGACAGCACATCGATGCTGTGGC...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCAGGGCTGCTGCCGCCTaGTCAATCCATGAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVRAAAA*SIHELC
Trigger: GCACAACTCATGGATTGAGCAGGCGGCAGCAGCCCT...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGGGCTGCTGCCGCCTaGTCAATCCATGAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYRAAAA*SIHELC
Trigger: GCACAACTCATGGATTGAGCAGGCGGCAGCAGCCCT...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACTTGATGCCCTTCCTCTaGAACGTGCCACGGCTTGCC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYLMPFL*NVPRLA
Trigger: GGCAAGCCGTGGCACGTTCCAGAGGAAGGGCATCAA...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTCAGACGAGCAGTGTCTaGGCTGAGGCAGAGGCACTA +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSQTSSV*AEAEAL
Trigger: TAGTGCCTCTGCCTCAGCCCAGACACTGCTCGTCTG...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCCAGACGAGCAGTGTCTaGGCTGAGGCAGAGGCACTA +
Preference number: 4 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSQTSSV*AEAEAL
Trigger: TAGTGCCTCTGCCTCAGCCCAGACACTGCTCGTCTG...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGACATCGATGTGCTGTCTaGCCTGGATGGCCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRHRCAV*PGWPAL
Trigger: GAGAGCTGGCCATCCAGGTCAGACAGCACATCGATG...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGCCCAGAGAGGCGTTTaGTGCAGGAGATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLAQRGV*CRRCCW
Trigger: CCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGC...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTCAATCAGCATCAAGCTaGGGCCTTCACTGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFQSASS*GLHWQR
Trigger: GCGCTGCCAGTGAAGGCCTCAGCTTGATGCTGATTG...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGGACGGATCCGCTCCTTaGCCACATCCATGTACTTGG +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQDGSAP*PHPCTW
Trigger: CCAAGTACATGGATGTGGTCAAGGAGCGGATCCGTC...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp GCTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACGCCTGCTCAATCCATaGGTTGTGCAGACAAGCCTG +
Preference number: 4 (lower is better)
Translates to: AVHEAVRQTRKAQGIWPIRLLNP*VVQTSL
Trigger: CAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCG...TATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGTTCTCCCTGAGCCTCTaGCTCGGACGCTTTGACTTC +
Preference number: 4 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGFSLSL*LGRFDF
Trigger: GAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAA...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACTTCTCCCTGAGCCTCTaGCTCGGACGCTTTGACTTC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYFSLSL*LGRFDF
Trigger: GAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAA...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCGACACATCTGCCTTCTaGTCGTGCACCTCAGCCATC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVDTSAF*SCTSAI
Trigger: GATGGCTGAGGTGCACGACCAGAAGGCAGATGTGTC...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACCCAGTTTGTCACGGATaGCAGGGGCCAAAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYPVCHG*QGPKSE
Trigger: CTCTGACTTTGGCCCCTGCCATCCGTGACAAACTGG...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCGTCTTCAGGTTCTCCTaGAAGAGTGGCTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVVFRFS*KSGWES
Trigger: GCTCTCCCAGCCACTCTTCCAGGAGAACCTGAAGAC...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAGCAGTGACTTCTCCCTaGGCCTCTGGCTCGGACGCT +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLAVTSP*ASGSDA
Trigger: AGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGC...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGGATCAGAACAAGCAGTaGCTTCTCCCTGAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRDQNKQ*LLPEPL
Trigger: CAGAGGCTCAGGGAGAAGTCACTGCTTGTTCTGATC...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTGACGGATCCGCTCCTTaGCCACATCCATGTACTTGG +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFDGSAP*PHPCTW
Trigger: CCAAGTACATGGATGTGGTCAAGGAGCGGATCCGTC...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGTTGGTGGCATTCCAGTaGTCCTTGGGATGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: YRHTASPATFNSTTCVRELVAFQ*SLGWVE
Trigger: CTCCACCCATCCCAAGGAGCACTGGAATGCCACCAA...CTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGTTGGTGGCATTCCAGTaGTCCTTGGGATGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLLVAFQ*SLGWVE
Trigger: CTCCACCCATCCCAAGGAGCACTGGAATGCCACCAA...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGTTTGCTTTTGGTGCATaGAGGCATGCAGGGTCAGCG +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQFAFGA*RHAGSA
Trigger: CGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAA...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGCCTTTGCTTTTGGTaGATGCAGGCATGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYSLCFW*MQACRV
Trigger: GACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCT...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACATCCAGACCTCGAGCTaGCACATCTGTTGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYIQTSS*HICCQE
Trigger: CTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGAT...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAGACACATCTGCCTTCTaGTCGTGCACCTCAGCCATC +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRDTSAF*SCTSAI
Trigger: GATGGCTGAGGTGCACGACCAGAAGGCAGATGTGTC...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCCAGTTTGTCACGGATaGCAGGGGCCAAAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: TQRHLPHLTPQHVCGRSFPVCHG*QGPKSE
Trigger: CTCTGACTTTGGCCCCTGCCATCCGTGACAAACTGG...GAAAGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGGCTCCTTGGGATGGGTaGAGCCTTCATCTTATGCCA +
Preference number: 4 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGAPWDG*SLHLMP
Trigger: TGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGC...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTCATTCCAGTGCTCCTTaGGATGGGTGGAGCCTTCAT +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSHSSAP*DGWSLH
Trigger: ATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATG...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GCTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATAATGTGCTGTCTGACCTaGATGGCCAGCTCTCGAGTA +
Preference number: 4 (lower is better)
Translates to: AVHEAVRQTRKAQGIWPIMCCLT*MASSRV
Trigger: TACTCGAGAGCTGGCCATCCAGGTCAGACAGCACAT...TATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGATTCGAGCAGGAGCTTaGTGTACCAGGGTTAGGGTG +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQIRAGA*CTRVRV
Trigger: CACCCTAACCCTGGTACACCAAGCTCCTGCTCGAAT...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGCTCTTCTTCCTCTTCTaGAACAGCCTGGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGLFFLF*NSLGLS
Trigger: AGAAAGGCCCAGGCTGTTTCAGAAGAGGAAGAAGAG...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACCACTGCAGCACTGAGTaGATCATCGGGATGGCAAAA +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYHCSTE*IIGMAK
Trigger: TTTTGCCATCCCGATGATTCACTCAGTGCTGCAGTG...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGGCCCAGAGAGGCGTTTaGTGCAGGAGATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVAQRGV*CRRCCW
Trigger: CCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGC...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTGAGGCCAGCACAGGCTaGGGCGGCCTGCCAGACTGT +
Preference number: 4 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTEASTG*GGLPDC
Trigger: ACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCTC...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACGGGTCGATCGTCACTTaGTTCCATTTCCCCACAATC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYGSIVT*FHFPTI
Trigger: GATTGTGGGGAAATGGAAGCAAGTGACGATCGACCC...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTTTTGCTTTTGGTGCATaGAGGCATGCAGGGTCAGCG +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFFAFGA*RHAGSA
Trigger: CGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAA...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGTTGATGCCCTTCCTCTaGAACGTGCCACGGCTTGCC +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVLMPFL*NVPRLA
Trigger: GGCAAGCCGTGGCACGTTCCAGAGGAAGGGCATCAA...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTCAGTGCTCCTTGGGATaGGTGGAGCCTTCATCTTAT +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSQCSLG*VEPSSY
Trigger: ATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTG...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGCAGTGCTCCTTGGGATaGGTGGAGCCTTCATCTTAT +
Preference number: 4 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRQCSLG*VEPSSY
Trigger: ATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTG...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGACATTCCAGTGCTCCTTaGGATGGGTGGAGCCTTCAT +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRHSSAP*DGWSLH
Trigger: ATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATG...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTAAACCTCATCTCCCTTaGTGGCATTCCAGTGCTCCT +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSKPHLP*WHSSAP
Trigger: AGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTT...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAAACCTCATCTCCCTTaGTGGCATTCCAGTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYKPHLP*WHSSAP
Trigger: AGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTT...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTATGTGCTGTCTGACCTaGATGGCCAGCTCTCGAGTA +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFMCCLT*MASSRV
Trigger: TACTCGAGAGCTGGCCATCCAGGTCAGACAGCACAT...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGATTCGAGCAGGAGCTTaGTGTACCAGGGTTAGGGTG +
Preference number: 4 (lower is better)
Translates to: YRHTASPATFNSTTCVREIRAGA*CTRVRV
Trigger: CACCCTAACCCTGGTACACCAAGCTCCTGCTCGAAT...CTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGTCTCGCAGTGGATCTTaGTCTCCGTTAGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLSRSGS*SPLASP
Trigger: TGGAGACGCTAACGGAGACCAAGATCCACTGCGAGA...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGTCATCTGTCTCGCAGTaGATCTTGGTCTCCGTTAGC +
Preference number: 4 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRSSVSQ*ILVSVS
Trigger: GCTAACGGAGACCAAGATCCACTGCGAGACAGATGA...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCGTACTTGGACTGCACTaGAAACAGTGGGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVVLGLH*KQWDVL
Trigger: GAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTAC...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGGTACTTGGACTGCACTaGAAACAGTGGGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGVLGLH*KQWDVL
Trigger: GAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTAC...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTTGCCCGGGGTTCTTTTaGCTTCTTCCTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFCPGFF*LLPPPL
Trigger: AAGAGGAGGAGGAAGAAGCCAAAAGAACCCCGGGCA...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGACTCTTCTTCCTCTTCTaGAACAGCCTGGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRLFFLF*NSLGLS
Trigger: AGAAAGGCCCAGGCTGTTTCAGAAGAGGAAGAAGAG...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTACATCGATGTGCTGTCTaGCCTGGATGGCCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLHRCAV*PGWPAL
Trigger: GAGAGCTGGCCATCCAGGTCAGACAGCACATCGATG...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCATCGATGTGCTGTCTaGCCTGGATGGCCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTHRCAV*PGWPAL
Trigger: GAGAGCTGGCCATCCAGGTCAGACAGCACATCGATG...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAGCCCAGAGAGGCGTTTaGTGCAGGAGATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLAQRGV*CRRCCW
Trigger: CCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGC...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGACGGATCCGCTCCTTaGCCACATCCATGTACTTGG +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSDGSAP*PHPCTW
Trigger: CCAAGTACATGGATGTGGTCAAGGAGCGGATCCGTC...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGTGCAGACGAGCAAACTaGTCCAGGTTTCTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLCRRAN*SRFLSL
Trigger: AAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCA...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGTCCATGTACTTGGACTaGACTGGAAACAGTGGGATG +
Preference number: 4 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRSMYLD*TGNSGM
Trigger: CATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGA...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCGTTTTTCTTCTTTCTTaGAGCAGCCTGGGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: TQRHLPHLTPQHVCGRSFVFLLS*SSLGQA
Trigger: AGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAAC...GAAAGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGTTTTTCTTCTTTCTTaGAGCAGCCTGGGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLVFLLS*SSLGQA
Trigger: AGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAAC...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTAAACCTCATCTCCCTTaGTGGCATTCCAGTGCTCCT +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFKPHLP*WHSSAP
Trigger: AGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTT...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTCTTCAGTCTCAATTCTaGCCTCCTCAGGCAACACTC +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFLQSQF*PPQATL
Trigger: GAGTGTTGCCTGAGGAGGCCAGAATTGAGACTGAAG...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGACTTCAGTCTCAATTCTaGCCTCCTCAGGCAACACTC +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRLQSQF*PPQATL
Trigger: GAGTGTTGCCTGAGGAGGCCAGAATTGAGACTGAAG...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GCTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACGTCCTCATTTTGCTTaGGGACAGGCTTTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: AVHEAVRQTRKAQGIWPIRPHFA*GQAFPL
Trigger: TAGAGGAAAAGCCTGTCCCCAAGCAAAATGAGGACG...TATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTATCACAATCTCAGGATaGCGGTTCAGCATCCTTTGC +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSITISG*RFSILC
Trigger: GCAAAGGATGCTGAACCGCCATCCTGAGATTGTGAT...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GGCCCATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTATCACAATCTCAGGATaGCGGTTCAGCATCCTTTGC +
Preference number: 4 (lower is better)
Translates to: GPYRSSSHRTRKGNLAAPITISG*RFSILC
Trigger: GCAAAGGATGCTGAACCGCCATCCTGAGATTGTGAT...AGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCCGACTGGGGTTGTACTaGGAGTCATTTAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVRLGLY*ESFSIS
Trigger: AGAGATGCTAAATGACTCCCAGTACAACCCCAGTCG...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGCGACTGGGGTTGTACTaGGAGTCATTTAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGRLGLY*ESFSIS
Trigger: AGAGATGCTAAATGACTCCCAGTACAACCCCAGTCG...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCTCATCTGTCTCGCAGTaGATCTTGGTCTCCGTTAGC +
Preference number: 4 (lower is better)
Translates to: TQRHLPHLTPQHVCGRSFSSVSQ*ILVSVS
Trigger: GCTAACGGAGACCAAGATCCACTGCGAGACAGATGA...GAAAGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGCTGCACTGGAAACAGTaGGATGTCCTCATCTTTCTG +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQLHWKQ*DVLIFL
Trigger: CAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAG...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCCCACATCCATGTACTTaGACTGCACTGGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVPHPCT*TALETV
Trigger: CACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGG...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTCAGACTCGATATTCCTaGAGGCCAGCACAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFQTRYS*RPAQAE
Trigger: CTCAGCCTGTGCTGGCCTCCAGGAATATCGAGTCTG...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACTGCCAACTTTGGCTTTaGGTTTGTCTCCTTCACCTT +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYCQLWL*VCLLHL
Trigger: AAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCA...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGGATCAGAACAAGCAGTaGCTTCTCCCTGAGCCTCTG +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVDQNKQ*LLPEPL
Trigger: CAGAGGCTCAGGGAGAAGTCACTGCTTGTTCTGATC...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCACGTGTTTCTTATaGAGGATTCGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSFTCFL*RIRAGA
Trigger: AGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAA...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCGCCTGCTCAATCCATaGGTTGTGCAGACAAGCCTG +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTRLLNP*VVQTSL
Trigger: CAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCG...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGATCCATCTGTCCATCTaGAAACAGATTCGGGTCGAT +
Preference number: 4 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGIHLSI*KQIRVD
Trigger: ATCGACCCGAATCTGTTTGCAGATGGACAGATGGAT...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp GCTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACGTGCCGCATCTCTCTaGTTCTTCAACTTGATCTTT +
Preference number: 4 (lower is better)
Translates to: AVHEAVRQTRKAQGIWPIRAASL*FFNLIF
Trigger: AAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACG...TATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTATTCAGTTCTGTCCTTaGAAGGTGATCCAAGATGGG +
Preference number: 4 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSIQFCP*KVIQDG
Trigger: CCCATCTTGGATCACCTTGCAAGGACAGAACTGAAT...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCATTCAGTTCTGTCCTTaGAAGGTGATCCAAGATGGG +
Preference number: 4 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSIQFCP*KVIQDG
Trigger: CCCATCTTGGATCACCTTGCAAGGACAGAACTGAAT...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAGCCTTTGCTTTTGGTaGATGCAGGCATGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFSLCFW*MQACRV
Trigger: GACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCT...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCATCCAGACCTCGAGCTaGCACATCTGTTGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSIQTSS*HICCQE
Trigger: CTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGAT...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTTCCATGTACTTGGACTaGACTGGAAACAGTGGGATG +
Preference number: 4 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFSMYLD*TGNSGM
Trigger: CATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGA...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGTCAATCCATGAGTTGTaGAGACAAGCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGSIHEL*RQAWKF
Trigger: GAACTTCCAGGCTTGTCTGCACAACTCATGGATTGA...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCTCAATCCATGAGTTGTaGAGACAAGCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSSIHEL*RQAWKF
Trigger: GAACTTCCAGGCTTGTCTGCACAACTCATGGATTGA...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACCGGGGGAGTGACCTGTaGCTTCTGCCAGAGTCCCAC +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDRGSDL*LLPESH
Trigger: GTGGGACTCTGGCAGAAGGCACAGGTCACTCCCCCG...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCCTTGATCTTTTTCTTTaGGGAGCTGGACTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: RHTASPATFNSTTCVREVLDLFL*GAGLSF
Trigger: GAAGGACAGTCCAGCTCCCCAAAGAAAAAGATCAAG...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGACCAGGCTTTCTGATTTaGCTCCTCCGACCTTTTGAT +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRPGFLI*LLRPFD
Trigger: ATCAAAAGGTCGGAGGAGCCAAATCAGAAAGCCTGG...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGTGAATCATCGGGATaGCAAAAGCCAGAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYSESSG*QKPEFS
Trigger: GGAAAACTCTGGCTTTTGCCATCCCGATGATTCACT...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp TACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGCGTCCTCATTTTGCTTaGGGACAGGCTTTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: YRHTASPATFNSTTCVRERPHFA*GQAFPL
Trigger: TAGAGGAAAAGCCTGTCCCCAAGCAAAATGAGGACG...CTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCGTCCTCATTTTGCTTaGGGACAGGCTTTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: TQRHLPHLTPQHVCGRSFRPHFA*GQAFPL
Trigger: TAGAGGAAAAGCCTGTCCCCAAGCAAAATGAGGACG...GAAAGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGAGGGCGCCTTaGGTGTACTTTATAAATAGC +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQKQRAP*VYFINS
Trigger: GCTATTTATAAAGTACACCCAAGGCGCCCTCTGCTT...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCATGTGCTGTCTGACCTaGATGGCCAGCTCTCGAGTA +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSMCCLT*MASSRV
Trigger: TACTCGAGAGCTGGCCATCCAGGTCAGACAGCACAT...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATTCGAGCAGGAGCTTaGTGTACCAGGGTTAGGGTG +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFIRAGA*CTRVRV
Trigger: CACCCTAACCCTGGTACACCAAGCTCCTGCTCGAAT...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGCCACATCCATGTACTTaGACTGCACTGGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLPHPCT*TALETV
Trigger: CACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGG...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTCTTCAGGTTCTCCTaGAAGAGTGGCTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHVFRFS*KSGWES
Trigger: GCTCTCCCAGCCACTCTTCCAGGAGAACCTGAAGAC...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACGCCTGCCAGACTGTGTaGGGTATCTGGTCTTCAGGT +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNACQTV*GIWSSG
Trigger: ACCTGAAGACCAGATACCCCACACAGTCTGGCAGGC...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCTCTTCTTCCTCTTCTaGAACAGCCTGGGCCTTTCT +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVLFFLF*NSLGLS
Trigger: AGAAAGGCCCAGGCTGTTTCAGAAGAGGAAGAAGAG...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCACTGCAGCACTGAGTaGATCATCGGGATGGCAAAA +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVHCSTE*IIGMAK
Trigger: TTTTGCCATCCCGATGATTCACTCAGTGCTGCAGTG...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGATTCACGTGTTTCTTATaGAGGATTCGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRFTCFL*RIRAGA
Trigger: AGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAA...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACCTTTCCAGCCTGTTCTaGATCAAACTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LSMRLSDRQERPKVSGPYLSSLF*IKLFFS
Trigger: GGAGAAGAAAAGTTTGATGCAGAACAGGCTGGAAAG...GTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGCCACAGCATCGATGTaGTGTCTGACCTGGATGGCC +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLATASM*CLTWMA
Trigger: GGCCATCCAGGTCAGACAGCACATCGATGCTGTGGC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGCGGTTCAGCATCCTTTaGTGTTTCTGTGTGGACATT +
Preference number: 4 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLRFSIL*CFCVDI
Trigger: AATGTCCACACAGAAACAGCAAAGGATGCTGAACCG...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTTTGCTTTTGGTGCATaGAGGCATGCAGGGTCAGCG +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNFAFGA*RHAGSA
Trigger: CGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAA...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGTGCAGACGAGCAAACTaGTCCAGGTTTCTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVCRRAN*SRFLSL
Trigger: AAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCA...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGTGACCTGTGCCTTCTaGCAGAGTCCCACGAGGGCT +
Preference number: 4 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTVTCAF*QSPTRA
Trigger: AGCCCTCGTGGGACTCTGGCAGAAGGCACAGGTCAC...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTGCTCCTTGGGATGGGTaGAGCCTTCATCTTATGCCA +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTAPWDG*SLHLMP
Trigger: TGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGC...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACCATTCCAGTGCTCCTTaGGATGGGTGGAGCCTTCAT +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNHSSAP*DGWSLH
Trigger: ATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATG...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATCTCGCAGTGGATCTTaGTCTCCGTTAGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLSRSGS*SPLASP
Trigger: TGGAGACGCTAACGGAGACCAAGATCCACTGCGAGA...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTTGCCCGGGGTTCTTTTaGCTTCTTCCTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTCPGFF*LLPPPL
Trigger: AAGAGGAGGAGGAAGAAGCCAAAAGAACCCCGGGCA...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGGGTCGATCGTCACTTaGTTCCATTTCCCCACAATC +
Preference number: 4 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHGSIVT*FHFPTI
Trigger: GATTGTGGGGAAATGGAAGCAAGTGACGATCGACCC...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAGGGTCGATCGTCACTTaGTTCCATTTCCCCACAATC +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLGSIVT*FHFPTI
Trigger: GATTGTGGGGAAATGGAAGCAAGTGACGATCGACCC...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGGCAATTTGGGGGAAGTaGTCTGAAAAGTATCCAATT +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQAIWGK*SEKYPI
Trigger: AATTGGATACTTTTCAGAGCACTTCCCCCAAATTGC...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR GCA 90 bp TACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGCTTTCCAGCCTGTTCTaGATCAAACTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: YRHTASPATFNSTTCVRELSSLF*IKLFFS
Trigger: GGAGAAGAAAAGTTTGATGCAGAACAGGCTGGAAAG...CTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATTGCAGACGAGCAAACTaGTCCAGGTTTCTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHCRRAN*SRFLSL
Trigger: AAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCA...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACATTGATGCCCTTCCTCTaGAACGTGCCACGGCTTGCC +
Preference number: 4 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTLMPFL*NVPRLA
Trigger: GGCAAGCCGTGGCACGTTCCAGAGGAAGGGCATCAA...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGTTCTCCCTGAGCCTCTaGCTCGGACGCTTTGACTTC +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLFSLSL*LGRFDF
Trigger: GAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAA...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCCCAGGCTTTCTGATTTaGCTCCTCCGACCTTTTGAT +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSPGFLI*LLRPFD
Trigger: ATCAAAAGGTCGGAGGAGCCAAATCAGAAAGCCTGG...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGACACATCTGCCTTCTaGTCGTGCACCTCAGCCATC +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLDTSAF*SCTSAI
Trigger: GATGGCTGAGGTGCACGACCAGAAGGCAGATGTGTC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTACTTCAGTCTCAATTCTaGCCTCCTCAGGCAACACTC +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLLQSQF*PPQATL
Trigger: GAGTGTTGCCTGAGGAGGCCAGAATTGAGACTGAAG...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATCACAATCTCAGGATaGCGGTTCAGCATCCTTTGC +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFITISG*RFSILC
Trigger: GCAAAGGATGCTGAACCGCCATCCTGAGATTGTGAT...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCCTGCACTGGAAACAGTaGGATGTCCTCATCTTTCTG +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSLHWKQ*DVLIFL
Trigger: CAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAG...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTGTGTGGGGTATCTaGTCTTCAGGTTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLTVWGI*SSGSPG
Trigger: TCCAGGAGAACCTGAAGACCAGATACCCCACACAGT...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGCAGACTCGATATTCCTaGAGGCCAGCACAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLQTRYS*RPAQAE
Trigger: CTCAGCCTGTGCTGGCCTCCAGGAATATCGAGTCTG...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGTCTCCTTCACCTTCATaGTTGCTCGGCCCCACCTTG +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLSPSPS*LLGPTL
Trigger: CAAGGTGGGGCCGAGCAACCATGAAGGTGAAGGAGA...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGCGAAGGTTACTCAAATaGGGGTGTTTTTCTTTAACT +
Preference number: 4 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGRRLLK*GCFSLT
Trigger: AGTTAAAGAAAAACACCCTCATTTGAGTAACCTTCG...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR TCA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACACGCCTGCTCAATCCATaGGTTGTGCAGACAAGCCTG +
Preference number: 4 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTRLLNP*VVQTSL
Trigger: CAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCG...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGATCCATCTGTCCATCTaGAAACAGATTCGGGTCGAT +
Preference number: 4 (lower is better)
Translates to: TDYRHTASPATFNSTTCVIHLSI*KQIRVD
Trigger: ATCGACCCGAATCTGTTTGCAGATGGACAGATGGAT...CACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACTTGGTGGCATTCCAGTaGTCCTTGGGATGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDLVAFQ*SLGWVE
Trigger: CTCCACCCATCCCAAGGAGCACTGGAATGCCACCAA...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGATCCAGACCTCGAGCTaGCACATCTGTTGCCAAGAG +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLIQTSS*HICCQE
Trigger: CTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGAT...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCATGTACTTGGACTaGACTGGAAACAGTGGGATG +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNSMYLD*TGNSGM
Trigger: CATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGA...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTCCAGTTTGTCACGGATaGCAGGGGCCAAAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTPVCHG*QGPKSE
Trigger: CTCTGACTTTGGCCCCTGCCATCCGTGACAAACTGG...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAGTGAATCATCGGGATaGCAAAAGCCAGAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFSESSG*QKPEFS
Trigger: GGAAAACTCTGGCTTTTGCCATCCCGATGATTCACT...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGCTCCTTGGGATGGGTaGAGCCTTCATCTTATGCCA +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLAPWDG*SLHLMP
Trigger: TGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp GTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGTTTGCTGTTTCTGTGTaGACATTCCACCAACTAAAA +
Preference number: 4 (lower is better)
Translates to: VHEAVRQTRKAQGIWPIQFAVSV*TFHQLK
Trigger: TTTTAGTTGGTGGAATGTCCACACAGAAACAGCAAA...CTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTACCACATCCATGTACTTaGACTGCACTGGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLPHPCT*TALETV
Trigger: CACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGG...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACCGACGTTCTTCTTGCTaGTCAGCTTTTCCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNRRSSC*SAFPPL
Trigger: CAAAGGAGGAAAAGCTGACCAGCAAGAAGAACGTCG...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACAGCCTGCCAGACTGTGTaGGGTATCTGGTCTTCAGGT +
Preference number: 4 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTACQTV*GIWSSG
Trigger: ACCTGAAGACCAGATACCCCACACAGTCTGGCAGGC...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATTGCCAACTTTGGCTTTaGGTTTGTCTCCTTCACCTT +
Preference number: 4 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHCQLWL*VCLLHL
Trigger: AAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCA...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGATTTCCCCACAATCTTaGTGCCCTTCCTCTGGAACG +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLISPQS*CPSSGT
Trigger: CGTTCCAGAGGAAGGGCATCAAGATTGTGGGGAAAT...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGCACTGCAGCACTGAGTaGATCATCGGGATGGCAAAA +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLHCSTE*IIGMAK
Trigger: TTTTGCCATCCCGATGATTCACTCAGTGCTGCAGTG...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTTTCACGTGTTTCTTATaGAGGATTCGAGCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTFTCFL*RIRAGA
Trigger: AGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAA...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTACGTGCCGCATCTCTCTaGTTCTTCAACTTGATCTTT +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLRAASL*FFNLIF
Trigger: AAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACG...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATATTCAGTTCTGTCCTTaGAAGGTGATCCAAGATGGG +
Preference number: 4 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHIQFCP*KVIQDG
Trigger: CCCATCTTGGATCACCTTGCAAGGACAGAACTGAAT...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTCTTTCCAGCCTGTTCTaGATCAAACTTTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFLSSLF*IKLFFS
Trigger: GGAGAAGAAAAGTTTGATGCAGAACAGGCTGGAAAG...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCGGTTCAGCATCCTTTaGTGTTTCTGTGTGGACATT +
Preference number: 4 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTRFSIL*CFCVDI
Trigger: AATGTCCACACAGAAACAGCAAAGGATGCTGAACCG...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACAGCCTTTGCTTTTGGTaGATGCAGGCATGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDSLCFW*MQACRV
Trigger: GACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCT...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATCAATCCATGAGTTGTaGAGACAAGCCTGGAAGTTC +
Preference number: 4 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLSIHEL*RQAWKF
Trigger: GAACTTCCAGGCTTGTCTGCACAACTCATGGATTGA...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACCTTGATCTTTTTCTTTaGGGAGCTGGACTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNLDLFL*GAGLSF
Trigger: GAAGGACAGTCCAGCTCCCCAAAGAAAAAGATCAAG...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGTTTTTCTTCTTTCTTaGAGCAGCCTGGGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLVFLLS*SSLGQA
Trigger: AGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAAC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACAAGCAGAGGGCGCCTTaGGTGTACTTTATAAATAGC +
Preference number: 4 (lower is better)
Translates to: KKSAYTDYRHTASPATFNKQRAP*VYFINS
Trigger: GCTATTTATAAAGTACACCCAAGGCGCCCTCTGCTT...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACTCTCGCAGTGGATCTTaGTCTCCGTTAGCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDSRSGS*SPLASP
Trigger: TGGAGACGCTAACGGAGACCAAGATCCACTGCGAGA...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTATTTCCCCACAATCTTaGTGCCCTTCCTCTGGAACG +
Preference number: 4 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTISPQS*CPSSGT
Trigger: CGTTCCAGAGGAAGGGCATCAAGATTGTGGGGAAAT...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACATCATCTGTCTCGCAGTaGATCTTGGTCTCCGTTAGC +
Preference number: 4 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTSSVSQ*ILVSVS
Trigger: GCTAACGGAGACCAAGATCCACTGCGAGACAGATGA...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTGTACTTGGACTGCACTaGAAACAGTGGGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTVLGLH*KQWDVL
Trigger: GAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTAC...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACTGTGTGGGGTATCTaGTCTTCAGGTTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTTVWGI*SSGSPG
Trigger: TCCAGGAGAACCTGAAGACCAGATACCCCACACAGT...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTCGAAGGTTACTCAAATaGGGGTGTTTTTCTTTAACT +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFRRLLK*GCFSLT
Trigger: AGTTAAAGAAAAACACCCTCATTTGAGTAACCTTCG...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACCCAGGCTTTCTGATTTaGCTCCTCCGACCTTTTGAT +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDPGFLI*LLRPFD
Trigger: ATCAAAAGGTCGGAGGAGCCAAATCAGAAAGCCTGG...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCTTTGCTGTTTCTGTGTaGACATTCCACCAACTAAAA +
Preference number: 4 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSFAVSV*TFHQLK
Trigger: TTTTAGTTGGTGGAATGTCCACACAGAAACAGCAAA...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTTTTGCTGTTTCTGTGTaGACATTCCACCAACTAAAA +
Preference number: 4 (lower is better)
Translates to: HKKSAYTDYRHTASPATFFAVSV*TFHQLK
Trigger: TTTTAGTTGGTGGAATGTCCACACAGAAACAGCAAA...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACACGACTGGGGTTGTACTaGGAGTCATTTAGCATCTCT +
Preference number: 4 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTRLGLY*ESFSIS
Trigger: AGAGATGCTAAATGACTCCCAGTACAACCCCAGTCG...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGCACTGGAAACAGTaGGATGTCCTCATCTTTCTG +
Preference number: 4 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTLHWKQ*DVLIFL
Trigger: CAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAG...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACGACGTTCTTCTTGCTaGTCAGCTTTTCCTCCTTTG +
Preference number: 4 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTRRSSC*SAFPPL
Trigger: CAAAGGAGGAAAAGCTGACCAGCAAGAAGAACGTCG...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACATGCCAACTTTGGCTTTaGGTTTGTCTCCTTCACCTT +
Preference number: 4 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTCQLWL*VCLLHL
Trigger: AAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCA...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACCGTGCCGCATCTCTCTaGTTCTTCAACTTGATCTTT +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDRAASL*FFNLIF
Trigger: AAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACG...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACCGGTTCAGCATCCTTTaGTGTTTCTGTGTGGACATT +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDRFSIL*CFCVDI
Trigger: AATGTCCACACAGAAACAGCAAAGGATGCTGAACCG...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACAGTGAATCATCGGGATaGCAAAAGCCAGAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDSESSG*QKPEFS
Trigger: GGAAAACTCTGGCTTTTGCCATCCCGATGATTCACT...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CCA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAAAGCAGAGGGCGCCTTaGGTGTACTTTATAAATAGC +
Preference number: 4 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTKQRAP*VYFINS
Trigger: GCTATTTATAAAGTACACCCAAGGCGCCCTCTGCTT...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR GCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGCAATTTGGGGGAAGTaGTCTGAAAAGTATCCAATT +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLAIWGK*SEKYPI
Trigger: AATTGGATACTTTTCAGAGCACTTCCCCCAAATTGC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR TCA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGCGAAGGTTACTCAAATaGGGGTGTTTTTCTTTAACT +
Preference number: 4 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLRRLLK*GCFSLT
Trigger: AGTTAAAGAAAAACACCCTCATTTGAGTAACCTTCG...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS GCA 90 bp GGTGAAGGGAACGTCACTAGAAATAGGGCGCGGGGGAGTGACCTGTaGCTTCTGCCAGAGTCCCACGAGGGCTTCAAGGGAGGTTGCCGG +
Preference number: 5 (lower is better)
Translates to: GEGNVTRNRARGSDL*LLPESHEGFKGGCR
Trigger: CCGGCAACCTCCCTTGAAGCCCTCGTGGGACTCTGGCAGAAGGCACAGGTCACTCCCCCGCGCCCTATTTCTAGTGACGTTCCCTTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS CCA 90 bp AGGCCAGCACAGGCTGAGGCGGCCTGCCAGACTGTGTGGGGTATCTaGTCTTCAGGTTCTCCTGGAAGAGTGGCTGGGAGAGCAGATGGC +
Preference number: 5 (lower is better)
Translates to: RPAQAEAACQTVWGI*SSGSPGRVAGRADG
Trigger: GCCATCTGCTCTCCCAGCCACTCTTCCAGGAGAACCTGAAGACCAGATACCCCACACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS CCA 90 bp AGCAGTGTCTGGGCTGAGGCAGAGGCACTAGTCTCAGGTGTGGCCTaGACCCCAGAGTCACTGGGCTGTGCTTCAGTCTCAATTCTGGCC +
Preference number: 5 (lower is better)
Translates to: SSVWAEAEALVSGVA*TPESLGCASVSILA
Trigger: GGCCAGAATTGAGACTGAAGCACAGCCCAGTGACTCTGGGGTCCAGGCCACACCTGAGACTAGTGCCTCTGCCTCAGCCCAGACACTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 90 bp TATTCCTGGAGGCCAGCACAGGCTGAGGCGGCCTGCCAGACTGTGTaGGGTATCTGGTCTTCAGGTTCTCCTGGAAGAGTGGCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: YSWRPAQAEAACQTV*GIWSSGSPGRVAGR
Trigger: TCTCCCAGCCACTCTTCCAGGAGAACCTGAAGACCAGATACCCCACACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCTCCAGGAATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGGCGCGCAGAACAGCCTaGGGCACAAACAGGTCCCTC +
Preference number: 5 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGARRTA*GTNRSL
Trigger: GAGGGACCTGTTTGTGCCCAAGGCTGTTCTGCGCGC...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS GCA 90 bp AACTGCTCCAGGTTTCTGAGCCTTTGCTTTTGGTGCATGCAGGCATaGAGGGTCAGCGGCATGACATCCAGGACCTTGAGGAGCCCAGAG +
Preference number: 5 (lower is better)
Translates to: NCSRFLSLCFWCMQA*RVSGMTSRTLRSPE
Trigger: CTCTGGGCTCCTCAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp TCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAGCGCGCAGAACAGCCTaGGGCACAAACAGGTCCCTC +
Preference number: 5 (lower is better)
Translates to: SMRLSDRQERPKVSGPYRARRTA*GTNRSL
Trigger: GAGGGACCTGTTTGTGCCCAAGGCTGTTCTGCGCGC...TCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS GCA 90 bp TGCAGACGAGCAAACTGCTCCAGGTTTCTGAGCCTTTGCTTTTGGTaGATGCAGGCATGCAGGGTCAGCGGCATGACATCCAGGACCTTG +
Preference number: 5 (lower is better)
Translates to: CRRANCSRFLSLCFW*MQACRVSGMTSRTL
Trigger: CAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS GCA 90 bp AGGTTCTCCTGGAAGAGTGGCTGGGAGAGCAGATGGCGTAGCTCCTaGTTCAGCATCTTCATCTGCTTCTGTCGCCGACGTTCTTCTTGC +
Preference number: 5 (lower is better)
Translates to: RFSWKSGWESRWRSS*FSIFICFCRRRSSC
Trigger: GCAAGAAGAACGTCGGCGACAGAAGCAGATGAAGATGCTGAAGCAGGAGCTACGCCATCTGCTCTCCCAGCCACTCTTCCAGGAGAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS CCA 90 bp TGGCCTGGACCCCAGAGTCACTGGGCTGTGCTTCAGTCTCAATTCTaGCCTCCTCAGGCAACACTCCAGATTCAGTTCTGTCCTTGCAAG +
Preference number: 5 (lower is better)
Translates to: WPGPQSHWAVLQSQF*PPQATLQIQFCPCK
Trigger: CTTGCAAGGACAGAACTGAATCTGGAGTGTTGCCTGAGGAGGCCAGAATTGAGACTGAAGCACAGCCCAGTGACTCTGGGGTCCAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCGTCTCGCAGTGGATCTaGGTCTCCGTTAGCGTCTCC +
Preference number: 5 (lower is better)
Translates to: RHTASPATFNSTTCVREVVSQWI*VSVSVS
Trigger: GGAGACGCTAACGGAGACCAAGATCCACTGCGAGAC...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCGTCTCGCAGTGGATCTaGGTCTCCGTTAGCGTCTCC +
Preference number: 5 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSVSQWI*VSVSVS
Trigger: GGAGACGCTAACGGAGACCAAGATCCACTGCGAGAC...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCATGACATCCAGGACCTaGAGGAGCCCAGAGAGGCGT +
Preference number: 5 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSMTSRT*RSPERR
Trigger: ACGCCTCTCTGGGCTCCTCAAGGTCCTGGATGTCAT...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AGACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCGTGCCCGGGGTTCTTTaGGCTTCTTCCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RHTASPATFNSTTCVREVVPGVL*ASSSSS
Trigger: AGAGGAGGAGGAAGAAGCCAAAAGAACCCCGGGCAC...GACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGGTGCCCGGGGTTCTTTaGGCTTCTTCCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGVPGVL*ASSSSS
Trigger: AGAGGAGGAGGAAGAAGCCAAAAGAACCCCGGGCAC...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 90 bp GCTCCTTGGGATGGGTGGAGCCTTCATCTTATGCCACTGCAGCACTaGGTGAATCATCGGGATGGCAAAAGCCAGAGTTTTCCCGCTTCC +
Preference number: 5 (lower is better)
Translates to: APWDGWSLHLMPLQH*VNHRDGKSQSFPAS
Trigger: GGAAGCGGGAAAACTCTGGCTTTTGCCATCCCGATGATTCACTCAGTGCTGCAGTGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS TCA 90 bp GGCCTCCTCAGGCAACACTCCAGATTCAGTTCTGTCCTTGCAAGGTaGTCCAAGATGGGCTGTAGCTCCAAACCTCATCTCCCTTGGTGG +
Preference number: 5 (lower is better)
Translates to: GLLRQHSRFSSVLAR*SKMGCSSKPHLPWW
Trigger: CCACCAAGGGAGATGAGGTTTGGAGCTACAGCCCATCTTGGATCACCTTGCAAGGACAGAACTGAATCTGGAGTGTTGCCTGAGGAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 90 bp AGGGCTGCTGCCGCCTGCTCAATCCATGAGTTGTGCAGACAAGCCTaGAAGTTCCGGTATTCAGCTTTTTCAATCTGTCGGGCTAGACGG +
Preference number: 5 (lower is better)
Translates to: RAAAACSIHELCRQA*KFRYSAFSICRARR
Trigger: CCGTCTAGCCCGACAGATTGAAAAAGCTGAATACCGGAACTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCGGCAGCAGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS-3UTR CAA 90 bp GCTGTCCATGAGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATAAGCCCAGAGAGGCGTTaGATGCAGGAGATGCTGTTG +
Preference number: 5 (lower is better)
Translates to: AVHEAVRQTRKAQGIWPISPERR*MQEMLL
Trigger: CAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCT...TATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCTCATGGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp ACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTCATGACATCCAGGACCTaGAGGAGCCCAGAGAGGCGT +
Preference number: 5 (lower is better)
Translates to: TQRHLPHLTPQHVCGRSFMTSRT*RSPERR
Trigger: ACGCCTCTCTGGGCTCCTCAAGGTCCTGGATGTCAT...GAAAGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGTCGCCGACGTTCTTCTaGCTGGTCAGCTTTTCCTCC +
Preference number: 5 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGSPTFF*LVSFSS
Trigger: GGAGGAAAAGCTGACCAGCAAGAAGAACGTCGGCGA...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 90 bp CTTGGGATGGGTGGAGCCTTCATCTTATGCCACTGCAGCACTGAGTaGATCATCGGGATGGCAAAAGCCAGAGTTTTCCCGCTTCCTGTC +
Preference number: 5 (lower is better)
Translates to: LGMGGAFILCHCSTE*IIGMAKARVFPLPV
Trigger: GACAGGAAGCGGGAAAACTCTGGCTTTTGCCATCCCGATGATTCACTCAGTGCTGCAGTGGCATAAGATGAAGGCTCCACCCATCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 90 bp CTCCAAACCTCATCTCCCTTGGTGGCATTCCAGTGCTCCTTGGGATaGGTGGAGCCTTCATCTTATGCCACTGCAGCACTGAGTGAATCA +
Preference number: 5 (lower is better)
Translates to: LQTSSPLVAFQCSLG*VEPSSYATAALSES
Trigger: TGATTCACTCAGTGCTGCAGTGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGGGCTCCTCCGACCTTTaGATCAGAACAAGCAGTGAC +
Preference number: 5 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRGSSDL*IRTSSD
Trigger: GTCACTGCTTGTTCTGATCAAAAGGTCGGAGGAGCC...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCATGCAGGAGATGCTGTaGGCAAACACCAGGCTACGA +
Preference number: 5 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSMQEML*ANTRLR
Trigger: TCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCAT...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AGGCTGTCAGACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCTCTGAGCCTTTGCTTTaGGTGCATGCAGGCATGCAG +
Preference number: 5 (lower is better)
Translates to: RLSDRQERPKVSGPYRSSSEPLL*VHAGMQ
Trigger: CTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGA...GCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTCTGACAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp ACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTGCGTGCTCAATCCATGAGTaGTGCAGACAAGCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: TCVREVFPAKGWKSGRFACSIHE*CRQAWK
Trigger: CTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCA...CGCAAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS CCA 90 bp GGCAACACTCCAGATTCAGTTCTGTCCTTGCAAGGTGATCCAAGATaGGCTGTAGCTCCAAACCTCATCTCCCTTGGTGGCATTCCAGTG +
Preference number: 5 (lower is better)
Translates to: GNTPDSVLSLQGDPR*AVAPNLISLGGIPV
Trigger: CACTGGAATGCCACCAAGGGAGATGAGGTTTGGAGCTACAGCCCATCTTGGATCACCTTGCAAGGACAGAACTGAATCTGGAGTGTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTCGGGTCGATCGTCACTaGCTTCCATTTCCCCACAAT +
Preference number: 5 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFRVDRH*LPFPHN
Trigger: ATTGTGGGGAAATGGAAGCAAGTGACGATCGACCCG...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTGGCTCCTCCGACCTTTaGATCAGAACAAGCAGTGAC +
Preference number: 5 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFGSSDL*IRTSSD
Trigger: GTCACTGCTTGTTCTGATCAAAAGGTCGGAGGAGCC...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGGCGGTTCAGCATCCTTaGCTGTTTCTGTGTGGACAT +
Preference number: 5 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRAVQHP*LFLCGH
Trigger: ATGTCCACACAGAAACAGCAAAGGATGCTGAACCGC...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp GACAGACAAGAAAGGCCCAAGGTATCTGGCCCATACAGAAGCAGCAGCCATAGGTGCTCAATCCATGAGTaGTGCAGACAAGCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: DRQERPKVSGPYRSSSHRCSIHE*CRQAWK
Trigger: CTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCA...CCTATGGCTGCTGCTTCTGTATGGGCCAGATACCTTGGGCCTTTCTTGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp CATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGCACGGCTTGCCAACTTaGGCTTTGAGTTTGTCTCCT +
Preference number: 5 (lower is better)
Translates to: HTEAAAIGQEKGTLLLLLHGLPT*ALSLSP
Trigger: AGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTG...CAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp GACACACAGCGTCACCTGCCACATTTAACTCCACAACATGTGTGCGGGAGGTCTTTAATCCCTGTAAACTaGGCCACAGCATCGATGTGC +
Preference number: 5 (lower is better)
Translates to: DTQRHLPHLTPQHVCGRSLIPVN*ATASMC
Trigger: GCACATCGATGCTGTGGCCAAGTTTACAGGGATTAA...AGACCTCCCGCACACATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTGCTGGGTTAATCCCTGTAAACTaGGCCACAGCATCGATGTGC +
Preference number: 5 (lower is better)
Translates to: YRSSSHRTRKGNLAAPAGLIPVN*ATASMC
Trigger: GCACATCGATGCTGTGGCCAAGTTTACAGGGATTAA...CCCAGCAGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGACCACATCCATGTACTaGGACTGCACTGGAAACAGT +
Preference number: 5 (lower is better)
Translates to: NSTTCVREVFPAKGWKSGTTSMY*DCTGNS
Trigger: ACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGT...CCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp GGCCCATACAGAAGCAGCAGCCATAGGACAAGAAAAGGGAACCTTGCTGCTCCTACCACATCCATGTACTaGGACTGCACTGGAAACAGT +
Preference number: 5 (lower is better)
Translates to: GPYRSSSHRTRKGNLAAPTTSMY*DCTGNS
Trigger: ACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGT...AGGAGCAGCAAGGTTCCCTTTTCTTGTCCTATGGCTGCTGCTTCTGTATGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGCTCCTCCGACCTTTaGATCAGAACAAGCAGTGAC +
Preference number: 5 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSGSSDL*IRTSSD
Trigger: GTCACTGCTTGTTCTGATCAAAAGGTCGGAGGAGCC...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACAGCGCGCAGAACAGCCTaGGGCACAAACAGGTCCCTC +
Preference number: 5 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTARRTA*GTNRSL
Trigger: GAGGGACCTGTTTGTGCCCAAGGCTGTTCTGCGCGC...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp CACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATGCAGGAGATGCTGTaGGCAAACACCAGGCTACGA +
Preference number: 5 (lower is better)
Translates to: HKKSAYTDYRHTASPATFMQEML*ANTRLR
Trigger: TCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCAT...AAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATAGCCCAGAGAGGCGTTaGATGCAGGAGATGCTGTTG +
Preference number: 5 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHSPERR*MQEMLL
Trigger: CAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCT...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp CATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTCCACAACATTCGCCGACGTTCTTCTaGCTGGTCAGCTTTTCCTCC +
Preference number: 5 (lower is better)
Translates to: HTLTTDTQRHLPHLTPQHSPTFF*LVSFSS
Trigger: GGAGGAAAAGCTGACCAGCAAGAAGAACGTCGGCGA...ATGTTGTGGAGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 90 bp CCCTTTGTTTTTCTTCTTTCTTGGAGCAGCCTGGGCCAGGCTTTCTaGTTTGGCTCCTCCGACCTTTTGATCAGAACAAGCAGTGACTTC +
Preference number: 5 (lower is better)
Translates to: PFVFLLSWSSLGQAF*FGSSDLLIRTSSDF
Trigger: GAAGTCACTGCTTGTTCTGATCAAAAGGTCGGAGGAGCCAAATCAGAAAGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAAAACAAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGGTCTCGCAGTGGATCTaGGTCTCCGTTAGCGTCTCC +
Preference number: 5 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLVSQWI*VSVSVS
Trigger: GGAGACGCTAACGGAGACCAAGATCCACTGCGAGAC...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCGGGAGGTTTACTTTGGCTTTGAGTTaGTCTCCTTCACCTTCATGG +
Preference number: 5 (lower is better)
Translates to: TTCVREVFPAKGWKSGRFTLALS*SPSPSW
Trigger: CCATGAAGGTGAAGGAGACAAACTCAAAGCCAAAGT...AAACCTCCCGCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS GCA 90 bp CCAGGGGTGGCGATCACAATCTCAGGATGGCGGTTCAGCATCCTTTaGTGTTTCTGTGTGGACATTCCACCAACTAAAATTGCTGTATTA +
Preference number: 5 (lower is better)
Translates to: PGVAITISGWRFSIL*CFCVDIPPTKIAVL
Trigger: TAATACAGCAATTTTAGTTGGTGGAATGTCCACACAGAAACAGCAAAGGATGCTGAACCGCCATCCTGAGATTGTGATCGCCACCCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS-3UTR CAA 90 bp AAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACCACGGCTTGCCAACTTaGGCTTTGAGTTTGTCTCCT +
Preference number: 5 (lower is better)
Translates to: KKSAYTDYRHTASPATFNHGLPT*ALSLSP
Trigger: AGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTG...GTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TTTAACTCCACAACATGTGTGCGGGAGGTCTTTCCTGCTAAAGGATGGAAGAGCTTAATCCCTGTAAACTaGGCCACAGCATCGATGTGC +
Preference number: 5 (lower is better)
Translates to: FNSTTCVREVFPAKGWKSLIPVN*ATASMC
Trigger: GCACATCGATGCTGTGGCCAAGTTTACAGGGATTAA...GCTCTTCCATCCTTTAGCAGGAAAGACCTCCCGCACACATGTTGTGGAGTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp CCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGAGCCCAGAGAGGCGTTaGATGCAGGAGATGCTGTTG +
Preference number: 5 (lower is better)
Translates to: PTWFNLENKVSTRSLHTLSPERR*MQEMLL
Trigger: CAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCT...CAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAATGACATCCAGGACCTaGAGGAGCCCAGAGAGGCGT +
Preference number: 5 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTMTSRT*RSPERR
Trigger: ACGCCTCTCTGGGCTCCTCAAGGTCCTGGATGTCAT...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 90 bp AGGTCAAGTTTGTCGGTTTTATCCATCTTCTTCACGTGTTTCTTATaGAGGATTCGAGCAGGAGCTTGGTGTACCAGGGTTAGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: RSSLSVLSIFFTCFL*RIRAGAWCTRVRVA
Trigger: TGCCACCCTAACCCTGGTACACCAAGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAAGAAGATGGATAAAACCGACAAACTTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 90 bp CCGCTCCTTGACCACATCCATGTACTTGGACTGCACTGGAAACAGTaGGATGTCCTCATCTTTCTGGAGAGTTTTGTAGATCTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: PLLDHIHVLGLHWKQ*DVLIFLESFVDLLE
Trigger: TTCAAGAAGATCTACAAAACTCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGTCAAGGAGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS-3UTR CAA 90 bp AGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTAACTACCACATCCATGTACTaGGACTGCACTGGAAACAGT +
Preference number: 5 (lower is better)
Translates to: RSLHTLTTDTQRHLPHLTTTSMY*DCTGNS
Trigger: ACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGT...AGTTAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACTCCTACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACGGGTCGATCGTCACTaGCTTCCATTTCCCCACAAT +
Preference number: 5 (lower is better)
Translates to: TPTWFNLENKVSTRSLHTRVDRH*LPFPHN
Trigger: ATTGTGGGGAAATGGAAGCAAGTGACGATCGACCCG...TGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGTAGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAATGCAGGAGATGCTGTaGGCAAACACCAGGCTACGA +
Preference number: 5 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTMQEML*ANTRLR
Trigger: TCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCAT...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACATCTGAGCCTTTGCTTTaGGTGCATGCAGGCATGCAG +
Preference number: 5 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTSEPLL*VHAGMQ
Trigger: CTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGA...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACTCTGAGCCTTTGCTTTaGGTGCATGCAGGCATGCAG +
Preference number: 5 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDSEPLL*VHAGMQ
Trigger: CTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGA...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 90 bp TTCTCTTCTTTGTCTCCTCACTTGAGAACAAACGGGAGGGATTCTTaGCTAAACGGTAATCTGTCAGCTCTTCAAAGCACACCAGGTCAT +
Preference number: 5 (lower is better)
Translates to: FSSLSPHLRTNGRDS*LNGNLSALQSTPGH
Trigger: ATGACCTGGTGTGCTTTGAAGAGCTGACAGATTACCGTTTAGTCAAGAATCCCTCCCGTTTGTTCTCAAGTGAGGAGACAAAGAAGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
ENSMUST00000223233.2
CDS-3UTR CAA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTCACGGCTTGCCAACTTaGGCTTTGAGTTTGTCTCCT +
Preference number: 5 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTHGLPT*ALSLSP
Trigger: AGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTG...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACAGACGCGGTTCAGCATCCTTaGCTGTTTCTGTGTGGACAT +
Preference number: 5 (lower is better)
Translates to: FNLENKVSTRSLHTLTTDAVQHP*LFLCGH
Trigger: ATGTCCACACAGAAACAGCAAAGGATGCTGAACCGC...GTCTGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTGCGGTTCAGCATCCTTaGCTGTTTCTGTGTGGACAT +
Preference number: 5 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTAVQHP*LFLCGH
Trigger: ATGTCCACACAGAAACAGCAAAGGATGCTGAACCGC...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp TGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTACATGCTCAATCCATGAGTaGTGCAGACAAGCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: WFNLENKVSTRSLHTLTTCSIHE*CRQAWK
Trigger: CTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCA...TGTAGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACAAGAAGTCTGCATACACTGACTACAGACACACAGCGTCACCTGCCACATTTATCAGCTTTTCCTCCTTaGTACATCTCTTCTTCTAGC +
Preference number: 5 (lower is better)
Translates to: TRSLHTLTTDTQRHLPHLSAFPP*YISSSS
Trigger: GCTAGAAGAAGAGATGTACAAAGGAGGAAAAGCTGA...TAAATGTGGCAGGTGACGCTGTGTGTCTGTAGTCAGTGTATGCAGACTTCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS-3UTR CAA 90 bp ACTTGGTTTAATCTGGAAAACAAGGTGAGCACAAGAAGTCTGCATACACTGACTTCAGCTTTTCCTCCTTaGTACATCTCTTCTTCTAGC +
Preference number: 5 (lower is better)
Translates to: TWFNLENKVSTRSLHTLTSAFPP*YISSSS
Trigger: GCTAGAAGAAGAGATGTACAAAGGAGGAAAAGCTGA...AGTCAGTGTATGCAGACTTCTTGTGCTCACCTTGTTTTCCAGATTAAACCAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS TCA 72 bp AGCGCAGACTCGATATTCCTGGAGGCCAGCACAGGCTaGGGCGGCCTGCCAGACTGTGTGGGGTATCTGGTC +
Preference number: 6 (lower is better)
Translates to: SADSIFLEASTG*GGLPDCVGYLV
Trigger: GACCAGATACCCCACACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCTCCAGGAATATCGAGTCTGCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS GCA 72 bp CTAGAAATAGGGCGCGGGGGAGTGACCTGTGCCTTCTaGCAGAGTCCCACGAGGGCTTCAAGGGAGGTTGCC +
Preference number: 6 (lower is better)
Translates to: LEIGRGGVTCAF*QSPTRASREVA
Trigger: GGCAACCTCCCTTGAAGCCCTCGTGGGACTCTGGCAGAAGGCACAGGTCACTCCCCCGCGCCCTATTTCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS CCA 72 bp TGGGCTGAGGCAGAGGCACTAGTCTCAGGTGTGGCCTaGACCCCAGAGTCACTGGGCTGTGCTTCAGTCTCA +
Preference number: 6 (lower is better)
Translates to: WAEAEALVSGVA*TPESLGCASVS
Trigger: TGAGACTGAAGCACAGCCCAGTGACTCTGGGGTCCAGGCCACACCTGAGACTAGTGCCTCTGCCTCAGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS GCA 72 bp CGATATTCCTGGAGGCCAGCACAGGCTGAGGCGGCCTaGCAGACTGTGTGGGGTATCTGGTCTTCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: RYSWRPAQAEAA*QTVWGIWSSGS
Trigger: AGAACCTGAAGACCAGATACCCCACACAGTCTGGCAGGCCGCCTCAGCCTGTGCTGGCCTCCAGGAATATCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS GCA 72 bp AACGTCACTAGAAATAGGGCGCGGGGGAGTGACCTGTaGCTTCTGCCAGAGTCCCACGAGGGCTTCAAGGGA +
Preference number: 6 (lower is better)
Translates to: NVTRNRARGSDL*LLPESHEGFKG
Trigger: TCCCTTGAAGCCCTCGTGGGACTCTGGCAGAAGGCACAGGTCACTCCCCCGCGCCCTATTTCTAGTGACGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS CAA 72 bp CAGGCATGCAGGGTCAGCGGCATGACATCCAGGACCTaGAGGAGCCCAGAGAGGCGTTTGATGCAGGAGATG +
Preference number: 6 (lower is better)
Translates to: QACRVSGMTSRT*RSPERRLMQEM
Trigger: CATCTCCTGCATCAAACGCCTCTCTGGGCTCCTCAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 90 bp TGGTGCATGCAGGCATGCAGGGTCAGCGGCATGACATCCAGGACCTaGAGGAGCCCAGAGAGGCGTTTGATGCAGGAGATGCTGTTGGCA +
Preference number: 6 (lower is better)
Translates to: WCMQACRVSGMTSRT*RSPERRLMQEMLLA
Trigger: TGCCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCTCCTCAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 90 bp CCTTCCTCTGGAACGTGCCACGGCTTGCCAACTTTGGCTTTGAGTTaGTCTCCTTCACCTGTGCCTTCTGCCAGAGTCCCACGAGGGCTT +
Preference number: 6 (lower is better)
Translates to: PSSGTCHGLPTLALS*SPSPVPSARVPRGL
Trigger: AAGCCCTCGTGGGACTCTGGCAGAAGGCACAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTGGCACGTTCCAGAGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223233.2
CDS GCA 72 bp TGGAAGAGTGGCTGGGAGAGCAGATGGCGTAGCTCCTaGTTCAGCATCTTCATCTGCTTCTGTCGCCGACGT +
Preference number: 6 (lower is better)
Translates to: WKSGWESRWRSS*FSIFICFCRRR
Trigger: ACGTCGGCGACAGAAGCAGATGAAGATGCTGAAGCAGGAGCTACGCCATCTGCTCTCCCAGCCACTCTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
CDS CCA 72 bp TCCAAGATGGGCTGTAGCTCCAAACCTCATCTCCCTTaGTGGCATTCCAGTGCTCCTTGGGATGGGTGGAGC +
Preference number: 6 (lower is better)
Translates to: SKMGCSSKPHLP*WHSSAPWDGWS
Trigger: GCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTTGGAGCTACAGCCCATCTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 72 bp CAGAGCCGACCAGGGGTGGCGATCACAATCTCAGGATaGCGGTTCAGCATCCTTTGCTGTTTCTGTGTGGAC +
Preference number: 6 (lower is better)
Translates to: QSRPGVAITISG*RFSILCCFCVD
Trigger: GTCCACACAGAAACAGCAAAGGATGCTGAACCGCCATCCTGAGATTGTGATCGCCACCCCTGGTCGGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 72 bp AGGAGCCCAGAGAGGCGTTTGATGCAGGAGATGCTGTaGGCAAACACCAGGCTACGACCTGGGTACTGCATG +
Preference number: 6 (lower is better)
Translates to: RSPERRLMQEML*ANTRLRPGYCM
Trigger: CATGCAGTACCCAGGTCGTAGCCTGGTGTTTGCCAACAGCATCTCCTGCATCAAACGCCTCTCTGGGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 90 bp ACCTGGCTGTGGTGGTGCCCGGGGTTCTTTTGGCTTCTTCCTCCTTaGTACATCTCTTCTTCTAGCTCAATCTCTAGGGCTGCTGCCGCC +
Preference number: 6 (lower is better)
Translates to: TWLWWCPGFFWLLPP*YISSSSSISRAAAA
Trigger: GGCGGCAGCAGCCCTAGAGATTGAGCTAGAAGAAGAGATGTACAAAGGAGGAAGAAGCCAAAAGAACCCCGGGCACCACCACAGCCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222782.2
CDS GCA 72 bp AGGTTTCTGAGCCTTTGCTTTTGGTGCATGCAGGCATaGAGGGTCAGCGGCATGACATCCAGGACCTTGAGG +
Preference number: 6 (lower is better)
Translates to: RFLSLCFWCMQA*RVSGMTSRTLR
Trigger: CCTCAAGGTCCTGGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS GCA 72 bp GCAAACTGCTCCAGGTTTCTGAGCCTTTGCTTTTGGTaGATGCAGGCATGCAGGGTCAGCGGCATGACATCC +
Preference number: 6 (lower is better)
Translates to: ANCSRFLSLCFW*MQACRVSGMTS
Trigger: GGATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 72 bp AAGATGGGCTGTAGCTCCAAACCTCATCTCCCTTGGTaGCATTCCAGTGCTCCTTGGGATGGGTGGAGCCTT +
Preference number: 6 (lower is better)
Translates to: KMGCSSKPHLPW*HSSAPWDGWSL
Trigger: AAGGCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTTGGAGCTACAGCCCATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 72 bp GTAAACTTGGCCACAGCATCGATGTGCTGTCTGACCTaGATGGCCAGCTCTCGAGTAGGAGTCAGCACCAGT +
Preference number: 6 (lower is better)
Translates to: VNLATASMCCLT*MASSRVGVSTS
Trigger: ACTGGTGCTGACTCCTACTCGAGAGCTGGCCATCCAGGTCAGACAGCACATCGATGCTGTGGCCAAGTTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 72 bp TTGCAGACGAGCAAACTGCTCCAGGTTTCTGAGCCTTaGCTTTTGGTGCATGCAGGCATGCAGGGTCAGCGG +
Preference number: 6 (lower is better)
Translates to: LQTSKLLQVSEP*LLVHAGMQGQR
Trigger: CCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS TCA 72 bp TGTCTCCTTCACCTTCATGGTTGCTCGGCCCCACCTTaGCAAGGTGAAGGGAACGTCACTAGAAATAGGGCG +
Preference number: 6 (lower is better)
Translates to: CLLHLHGCSAPP*QGEGNVTRNRA
Trigger: CGCCCTATTTCTAGTGACGTTCCCTTCACCTTGTCAAGGTGGGGCCGAGCAACCATGAAGGTGAAGGAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110001.4
CDS CCA 72 bp AAACCTCATCTCCCTTGGTGGCATTCCAGTGCTCCTTaGGATGGGTGGAGCCTTCATCTTATGCCACTGCAG +
Preference number: 6 (lower is better)
Translates to: KPHLPWWHSSAP*DGWSLHLMPLQ
Trigger: CTGCAGTGGCATAAGATGAAGGCTCCACCCATCCCAAGGAGCACTGGAATGCCACCAAGGGAGATGAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 72 bp CCCCAGAGTCACTGGGCTGTGCTTCAGTCTCAATTCTaGCCTCCTCAGGCAACACTCCAGATTCAGTTCTGT +
Preference number: 6 (lower is better)
Translates to: PQSHWAVLQSQF*PPQATLQIQFC
Trigger: ACAGAACTGAATCTGGAGTGTTGCCTGAGGAGGCCAGAATTGAGACTGAAGCACAGCCCAGTGACTCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CAA 72 bp TGCCCTTCCTCTGGAACGTGCCACGGCTTGCCAACTTaGGCTTTGAGTTTGTCTCCTTCACCTGTGCCTTCT +
Preference number: 6 (lower is better)
Translates to: CPSSGTCHGLPT*ALSLSPSPVPS
Trigger: AGAAGGCACAGGTGAAGGAGACAAACTCAAAGCCAAAGTTGGCAAGCCGTGGCACGTTCCAGAGGAAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223233.2
CDS CAA 90 bp AACACAGTCTTGCAGACGAGCAAACTGCTCCAGGTTTCTGAGCCTTaGCTTTTGGTGCATGCAGGCATGCAGGGTCAGCGGCATGACATC +
Preference number: 6 (lower is better)
Translates to: NTVLQTSKLLQVSEP*LLVHAGMQGQRHDI
Trigger: GATGTCATGCCGCTGACCCTGCATGCCTGCATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCAAGACTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS GCA 72 bp TCTTCTTCTAGCTCAATCTCTAGGGCTGCTGCCGCCTaGTCAATCCATGAGTTGTGCAGACAAGCCTGGAAG +
Preference number: 6 (lower is better)
Translates to: SSSSSISRAAAA*SIHELCRQAWK
Trigger: CTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCGGCAGCAGCCCTAGAGATTGAGCTAGAAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS CAA 90 bp ATCTGTCGGGCTAGACGGATCCGCTCCTTGACCACATCCATGTACTaGGACTGCACTGGAAACAGTGGGATGTCCTCATCTTTCTGGAGA +
Preference number: 6 (lower is better)
Translates to: ICRARRIRSLTTSMY*DCTGNSGMSSSFWR
Trigger: TCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGTCAAGGAGCGGATCCGTCTAGCCCGACAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS CAA 90 bp CAGGTAAAAGCTAAAAGAAAGCAATCGCCCTGCCCAGGCGCACCTTaGTACATCTCTTCTTCTAGCTCAATCTCTAGGGCTGCTGCCGCC +
Preference number: 6 (lower is better)
Translates to: QVKAKRKQSPCPGAP*YISSSSSISRAAAA
Trigger: GGCGGCAGCAGCCCTAGAGATTGAGCTAGAAGAAGAGATGTACAAAGGTGCGCCTGGGCAGGGCGATTGCTTTCTTTTAGCTTTTACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221211.2
CDS GCA 72 bp ATACTCATTCTGGGCAGCAGCGCCTTCGGCAGCTCGTaGCGCATCTCTCTGCTTCTTCAACTTGATCTTTTT +
Preference number: 6 (lower is better)
Translates to: ILILGSSAFGSS*RISLLLQLDLF
Trigger: AAAAAGATCAAGTTGAAGAAGCAGAGAGATGCGGCACGAGCTGCCGAAGGCGCTGCTGCCCAGAATGAGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
CDS CCA 72 bp TTGATCAGAACAAGCAGTGACTTCTCCCTGAGCCTCTaGCTCGGACGCTTTGACTTCATACTCATTCTGGGC +
Preference number: 6 (lower is better)
Translates to: LIRTSSDFSLSL*LGRFDFILILG
Trigger: GCCCAGAATGAGTATGAAGTCAAAGCGTCCGAGCCAGAGGCTCAGGGAGAAGTCACTGCTTGTTCTGATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
CDS CCA 72 bp CCGCTCCTTGACCACATCCATGTACTTGGACTGCACTaGAAACAGTGGGATGTCCTCATCTTTCTGGAGAGT +
Preference number: 6 (lower is better)
Translates to: PLLDHIHVLGLH*KQWDVLIFLES
Trigger: ACTCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGTCAAGGAGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS CCA 72 bp GCCGCCTGCTCAATCCATGAGTTGTGCAGACAAGCCTaGAAGTTCCGGTATTCAGCTTTTTCAATCTGTCGG +
Preference number: 6 (lower is better)
Translates to: AACSIHELCRQA*KFRYSAFSICR
Trigger: CCGACAGATTGAAAAAGCTGAATACCGGAACTTCCAGGCTTGTCTGCACAACTCATGGATTGAGCAGGCGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS TCA 72 bp TTTCTTCTTTCTTGGAGCAGCCTGGGCCAGGCTTTCTaGTTTGGCTCCTCCGACCTTTTGATCAGAACAAGC +
Preference number: 6 (lower is better)
Translates to: FLLSWSSLGQAF*FGSSDLLIRTS
Trigger: GCTTGTTCTGATCAAAAGGTCGGAGGAGCCAAATCAGAAAGCCTGGCCCAGGCTGCTCCAAGAAAGAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
CDS TCA 72 bp AGGCAACACTCCAGATTCAGTTCTGTCCTTGCAAGGTaGTCCAAGATGGGCTGTAGCTCCAAACCTCATCTC +
Preference number: 6 (lower is better)
Translates to: RQHSRFSSVLAR*SKMGCSSKPHL
Trigger: GAGATGAGGTTTGGAGCTACAGCCCATCTTGGATCACCTTGCAAGGACAGAACTGAATCTGGAGTGTTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS GCA 72 bp GTTGCCAAGAGAACACAGTCTTGCAGACGAGCAAACTaGTCCAGGTTTCTGAGCCTTTGCTTTTGGTGCATG +
Preference number: 6 (lower is better)
Translates to: VAKRTQSCRRAN*SRFLSLCFWCM
Trigger: CATGCACCAAAAGCAAAGGCTCAGAAACCTGGAGCAGTTTGCTCGTCTGCAAGACTGTGTTCTCTTGGCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS GCA 72 bp GACATGTTGAACTTTAGGAATATCCAGACCTCGAGCTaGCACATCTGTTGCCAAGAGAACACAGTCTTGCAG +
Preference number: 6 (lower is better)
Translates to: DMLNFRNIQTSS*HICCQENTVLQ
Trigger: CTGCAAGACTGTGTTCTCTTGGCAACAGATGTGGCAGCTCGAGGTCTGGATATTCCTAAAGTTCAACATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS GCA 72 bp GCGATCACAATCTCAGGATGGCGGTTCAGCATCCTTTaGTGTTTCTGTGTGGACATTCCACCAACTAAAATT +
Preference number: 6 (lower is better)
Translates to: AITISGWRFSIL*CFCVDIPPTKI
Trigger: AATTTTAGTTGGTGGAATGTCCACACAGAAACAGCAAAGGATGCTGAACCGCCATCCTGAGATTGTGATCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS CCA 72 bp GACCACATCCATGTACTTGGACTGCACTGGAAACAGTaGGATGTCCTCATCTTTCTGGAGAGTTTTGTAGAT +
Preference number: 6 (lower is better)
Translates to: DHIHVLGLHWKQ*DVLIFLESFVD
Trigger: ATCTACAAAACTCTCCAGAAAGATGAGGACATCCCACTGTTTCCAGTGCAGTCCAAGTACATGGATGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
ENSMUST00000222782.2
CDS CAA 72 bp CCACCAACTAAAATTGCTGTATTAATCCCTGTAAACTaGGCCACAGCATCGATGTGCTGTCTGACCTGGATG +
Preference number: 6 (lower is better)
Translates to: PPTKIAVLIPVN*ATASMCCLTWM
Trigger: CATCCAGGTCAGACAGCACATCGATGCTGTGGCCAAGTTTACAGGGATTAATACAGCAATTTTAGTTGGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2
CDS TCA 72 bp TTGTCTCCTCACTTGAGAACAAACGGGAGGGATTCTTaGCTAAACGGTAATCTGTCAGCTCTTCAAAGCACA +
Preference number: 6 (lower is better)
Translates to: LSPHLRTNGRDS*LNGNLSALQST
Trigger: TGTGCTTTGAAGAGCTGACAGATTACCGTTTAGTCAAGAATCCCTCCCGTTTGTTCTCAAGTGAGGAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000220975.2
ENSMUST00000221211.2
ENSMUST00000223233.2
CDS TCA 72 bp TTGTCGGTTTTATCCATCTTCTTCACGTGTTTCTTATaGAGGATTCGAGCAGGAGCTTGGTGTACCAGGGTT +
Preference number: 6 (lower is better)
Translates to: LSVLSIFFTCFL*RIRAGAWCTRV
Trigger: AACCCTGGTACACCAAGCTCCTGCTCGAATCCTTCATAAGAAACACGTGAAGAAGATGGATAAAACCGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044923.15
ENSMUST00000110001.4
ENSMUST00000221211.2