Pregenerated sensors for DDX20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027905Ensembl transcript IDs: ENSMUST00000090680.11, ENSMUST00000200078.5
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAAGAATaGATATCCAATTATCCGTTGACAGTCACTAGTCTGAAGCACATG | + |
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Preference number: 1 (lower is better) Translates to: VPPKCHQTPLVLGEE*ISNYPLTVTSLKHM Trigger: CATGTGCTTCAGACTAGTGACTGTCAACGGATAATTGGATATGCATTCTTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| 3UTR-3UTR TCA 90 bp | GGCCAGCTCTGCCAATCCGATGCATGTAAGTCTCCCAGTCTAACGGCACATCGAACTGCTTCAAACCTATaGGACTTGGATCGCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: GQLCQSDACKSPSLTAHRTASNL*DLDRWD Trigger: ATCCCAGCGATCCAAGTCTCATAGGTTTGAAGCAGT...TCGATGTGCCGTTAGACTGGGAGACTTACATGCATCGGATTGGCAGAGCTGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR-3UTR CCA 90 bp | TTTACAACTAGATTCACCTTCTCTGCGTCAATCCCACGGGACGTCAAGTCTGTACAAACCTATGAGACTTaGATCGCTGGGATTCAATCT | + |
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Preference number: 2 (lower is better) Translates to: FTTRFTFSASIPRDVKSVQTYET*IAGIQS Trigger: AGATTGAATCCCAGCGATCCAAGTCTCATAGGTTTG...TACAGACTTGACGTCCCGTGGGATTGACGCAGAGAAGGTGAATCTAGTTGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR-3UTR GCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAAGTTCTAGGTGAAGAATaGATATCCAATTATCCGTTG | + |
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Preference number: 2 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKVLGEE*ISNYPL Trigger: CAACGGATAATTGGATATGCATTCTTCACCTAGAAC...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| 3UTR GCA 72 bp | TCACTGTCAGTCCCAATGTACCAAAACGGCCAGCTCTaGCAATCCGATGCATGTAAGTCTCCCAGTCTAACG | + |
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Preference number: 3 (lower is better) Translates to: SLSVPMYQNGQL*QSDACKSPSLT Trigger: CGTTAGACTGGGAGACTTACATGCATCGGATTGGCAGAGCTGGCCGTTTTGGTACATTGGGACTGACAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCTGCCAATCCGATGCATGTAAGTCTCCCAGTCTAACGGCACATCGAGATGTAAGAATTGACAACTaGGTAGTACTGCTTCAAACC | + |
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Preference number: 3 (lower is better) Translates to: QLCQSDACKSPSLTAHRDVRIDN*VVLLQT Trigger: GGTTTGAAGCAGTACTACCAAGTTGTCAATTCTTAC...ATCTCGATGTGCCGTTAGACTGGGAGACTTACATGCATCGGATTGGCAGAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCATATCCAATTATCCGTaGACAGTCACTAGTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: KASSPLKFLQNATKPHLFISNYP*TVTSLK Trigger: CTTCAGACTAGTGACTGTCAACGGATAATTGGATAT...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| 3UTR-3UTR CAA 90 bp | TGCCAATCCGATGCATGTAAGTCTCCCAGTCTAACGGCACATCGAGATTTACAAGATATCAGCCAAATGTaGAGCTCTGCTGTGCAAATT | + |
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Preference number: 3 (lower is better) Translates to: CQSDACKSPSLTAHRDLQDISQM*SSAVQI Trigger: AATTTGCACAGCAGAGCTCAACATTTGGCTGATATC...TTGTAAATCTCGATGTGCCGTTAGACTGGGAGACTTACATGCATCGGATTGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR TCA 72 bp | TCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTaGAGAATGCATATCCAATTATCCGTTGACAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: SSKMPPNPTCSR*RMHIQLSVDSH Trigger: GTGACTGTCAACGGATAATTGGATATGCATTCTTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| 3UTR TCA 72 bp | CACCTTCTTAAAGATTTCTTTTGGGAACAGCCTACATaGAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: HLLKDFFWEQPT*SGTLGVFRSKF Trigger: GAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAATCTTTAAGAAGGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| 3UTR-3UTR CAA 90 bp | ACTTCCACATCCCAATTCAAGCATTCTTCCATCAGGCCAGGAGGAATAGGATCTGTAAATCCAATTTATTaGCTCCTGGAAACTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: TSTSQFKHSSIRPGGIGSVNPIY*LLETAF Trigger: GAAGGCAGTTTCCAGGAGCAAATAAATTGGATTTAC...AGATCCTATTCCTCCTGGCCTGATGGAAGAATGCTTGAATTGGGATGTGGAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| 3UTR GCA 72 bp | AAATGCCACCAAACCCCACTTGTTCTAGGTGAAGAATaGATATCCAATTATCCGTTGACAGTCACTAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: KCHQTPLVLGEE*ISNYPLTVTSL Trigger: CAGACTAGTGACTGTCAACGGATAATTGGATATGCATTCTTCACCTAGAACAAGTGGGGTTTGGTGGCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCCCAACGGGATGGCCTTaGGCTGCACCGGAGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: KASSPLKFLQNATKPHLFPTGWP*AAPERV Trigger: GACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGG...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ACTTCCACATCCCAATTCAAGCATTCTTCCATCAGGCCAGGAGGAATAGGATCTCCAACGGGATGGCCTTaGGCTGCACCGGAGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: TSTSQFKHSSIRPGGIGSPTGWP*AAPERV Trigger: GACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGG...AGATCCTATTCCTCCTGGCCTGATGGAAGAATGCTTGAATTGGGATGTGGAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| CDS-3UTR GCA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGGGGATGGCCTTGAGCTaGACCGGAGAGGGTCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLGMALS*TGEGLS Trigger: CGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCC...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | TCTAAAAGCTTATCTGCTTCATCAAGAATAAAGAGACGGATACTGCCCGGATTCGGGATGGCCTTGAGCTaGACCGGAGAGGGTCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: SKSLSASSRIKRRILPGFGMALS*TGEGLS Trigger: CGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCC...GAATCCGGGCAGTATCCGTCTCTTTATTCTTGATGAAGCAGATAAGCTTTTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| CDS-3UTR GCA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCCAGGAAGCTTTGGTTTaGTGTGCTTTGGCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: KASSPLKFLQNATKPHLFQEALV*CALAWL Trigger: CAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTG...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | CCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGAGAAGAACGCCGTGCTaGGTTTCTCCGACTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: PQVLSSSSKMPPNPTCSRRRTPC*VSPTLL Trigger: AAGCAAAGTCGGAGAAACCCAGCACGGCGTTCTTCT...CCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAGAGCTATCTTTGGCCTaGTGCTGGCTGTTACTGGAG | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPELSLA*CWLLLE Trigger: CTCCAGTAACAGCCAGCATCAGGCCAAAGATAGCTC...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | AAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAACTGGGAAGAAGTCCTTaGGCTGCAAGAATCGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: KSSQVPPKCHQTPLVLGELGRSP*AARIAV Trigger: GACAGCGATTCTTGCAGCTCAAGGACTTCTTCCCAG...TTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAAGGCAGCCATCCAGCTTaGATGTCTCTGAGCATTCCA | + |
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Preference number: 4 (lower is better) Translates to: KSSQVPPKCHQTPLVLGEGSHPA*MSLSIP Trigger: TGGAATGCTCAGAGACATCCAAGCTGGATGGCTGCC...TTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | AAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAACTCTTCCTGGGGTTCTaGCTGTACTCGGTAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: KSSQVPPKCHQTPLVLGELFLGF*LYSVRR Trigger: TCTTCTTACCGAGTACAGTCAGAACCCCAGGAAGAG...TTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCACAAAACGGCCAGCTCTaGCAATCCGATGCATGTAAG | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPQNGQL*QSDACK Trigger: CTTACATGCATCGGATTGGCAGAGCTGGCCGTTTTG...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | TTAAAGATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTATGCTGTGCTTTGGCCTaGCTGACAGTGCAGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: LKISFGNSLHEVAPWGSLCCALA*LTVQMQ Trigger: CTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCA...TAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAATCTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAATTGCTCTTCCAGCTGTaGGGGACAGCCCGACTCTTG | + |
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Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKLLFQL*GTARLL Trigger: CAAGAGTCGGGCTGTCCCGCACAGCTGGAAGAGCAA...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | AAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTTTAGCGCCTTCTTTATaGCTTGCCTTTACCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: KPQVLSSSSKMPPNPTCSLAPSL*LAFTWV Trigger: AACCCAGGTAAAGGCAAGGCATAAAGAAGGCGCTAA...AGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTTTCACAGGAAGCTTTaGTTTGCTGTGCTTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCFHRKL*FAVLWP Trigger: AGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAA...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTACTCCACACTCTGAGTaGCTTTTCACAGGAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCTPHSE*LFTGSF Trigger: AAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGT...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | CCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGGTATCATTTCCATTCTaGACTTGTTCCAGAGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: PQVLSSSSKMPPNPTCSRVSFPF*TCSRER Trigger: TCTCTCTCTGGAACAAGTTCAGAATGGAAATGATAC...CCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | TTAAAGATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGTGCCCGACTTAGCTTaGACAATTAAATCGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LKISFGNSLHEVAPWGSLVPDLA*TIKSSP Trigger: CGGGCTCGATTTAATTGTCCAAGCTAAGTCGGGCAC...TAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAATCTTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCCAAACCTATGAGACTTaGATCGCTGGGATTCAATCT | + |
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Preference number: 4 (lower is better) Translates to: KASSPLKFLQNATKPHLFQTYET*IAGIQS Trigger: AGATTGAATCCCAGCGATCCAAGTCTCATAGGTTTG...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTCTTTGCTTAGACCTTTaGTTAGCGCCTTCTTTATGC | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCLCLDL*LAPSLC Trigger: GCATAAAGAAGGCGCTAACCAAAGGTCTAAGCAAAG...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCATCCTCAACAGAGGTCTaGACAGAATTCTTAACTTGC | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPSSTEV*TEFLTC Trigger: GCAAGTTAAGAATTCTGTTCAGACCTCTGTTGAGGA...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAAATCGCTGTCACTCTCTaGGTCTCCAGACTGGCTACT | + |
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Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKIAVTL*VSRLAT Trigger: AGTAGCCAGTCTGGAGACTCAGAGAGTGACAGCGAT...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAATCGTCTACCAGTTCTaGAAAAGTCAAAGTAGACGG | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPIVYQF*KSQSRR Trigger: CCGTCTACTTTGACTTTTGCAGAACTGGTAGACGAT...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR GCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTACTCACCAACATCTGTaGTCTATCTTCAGAAACTCT | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCTHQHL*SIFRNS Trigger: AGAGTTTCTGAAGATAGAGCACAGATGTTGGTGAGT...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | TCTAAAAGCTTATCTGCTTCATCAAGAATAAAGAGACGGATACTGCCCGGATTCGTGCCCGACTTAGCTTaGACAATTAAATCGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: SKSLSASSRIKRRILPGFVPDLA*TIKSSP Trigger: CGGGCTCGATTTAATTGTCCAAGCTAAGTCGGGCAC...GAATCCGGGCAGTATCCGTCTCTTTATTCTTGATGAAGCAGATAAGCTTTTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| CDS-3UTR CCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTAGTCCAGAGCAATGGTaGAGAATACACAAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCSPEQW*RIHKFF Trigger: GAAAAACTTGTGTATTCTCCACCATTGCTCTGGACT...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | TTCTTCTCCTCTACAACAGTAGGTCACTGTCAGTCCCAATGTACCAAAACGGCCAGTCCAGAGCAATGGTaGAGAATACACAAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: FFSSTTVGHCQSQCTKTASPEQW*RIHKFF Trigger: GAAAAACTTGTGTATTCTCCACCATTGCTCTGGACT...GGCCGTTTTGGTACATTGGGACTGACAGTGACCTACTGTTGTAGAGGAGAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
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| CDS-3UTR CCA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGTACCAACTCTCTTCCTaGGGTTCTGACTGTACTCGG | + |
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Preference number: 4 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLYQLSS*GSDCTR Trigger: CCGAGTACAGTCAGAACCCCAGGAAGAGAGTTGGTA...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTGATCCAACAGCAATATaGCACTTTTTAAGTCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCDPTAI*HFLSLV Trigger: AACCAGACTTAAAAAGTGTCATATTGCTGTTGGATC...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCCTGTAAGTGCTaGGTCTTTTCCTCAAAAATC | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPSSCKC*VFSSKI Trigger: GATTTTTGAGGAAAAGACTCAGCACTTACAGGAACT...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAATATCAGCCAAATGTTaGGCTCTGCTGTGCAAATTA | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPISAKC*ALLCKL Trigger: TAATTTGCACAGCAGAGCTCAACATTTGGCTGATAT...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTCTGATTCATGTTACCTaGAATGCATTCAGTAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCLIHVT*NAFSRK Trigger: TTTCCTACTGAATGCATTTCAGGTAACATGAATCAG...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR CCA 90 bp | AAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTCAGCAATTTCTCTTGTaGGAGCCAATATCAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: KPQVLSSSSKMPPNPTCSQQFLL*EPISKS Trigger: AGATTTTGATATTGGCTCCCACAAGAGAAATTGCTG...AGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCACCTCCAATAAAGACATaGCATTCTAATCCTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPPPIKT*HSNPSI Trigger: AATGGAAGGATTAGAATGTCATGTCTTTATTGGAGG...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS-3UTR TCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAAACTGCTTCAAACCTATaGGACTTGGATCGCTGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKTASNL*DLDRWD Trigger: ATCCCAGCGATCCAAGTCTCATAGGTTTGAAGCAGT...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR TCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAAAGTAGCTACAGTTGGTaGGCTGTAAGTATGCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKSSYSW*AVSMHG Trigger: GCCATGCATACTTACAGCTCACCAACTGTAGCTACT...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAATCTGAGTCTCCAGACTaGCTACTACTCACCAACATC | + |
|
Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKSESPD*LLLTNI Trigger: GATGTTGGTGAGTAGTAGCCAGTCTGGAGACTCAGA...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR TCA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGGTCAAAGTAGACGGCTaGTGGACTTTAAAAGAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLVKVDG*WTLKED Trigger: GTCTTCTTTTAAAGTCCATCAGCCGTCTACTTTGAC...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR TCA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGATAACCGAGTGTATCTaGACAGCAATTTCTCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLITECI*TAISLV Trigger: CACAAGAGAAATTGCTGTTCAGATACACTCGGTTAT...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR TCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAAAGCATTCCAATAGTATaGATGGGAAGCAGCAGCATA | + |
|
Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKSIPIV*MGSSSI Trigger: TATGCTGCTGCTTCCCATTCATACTATTGGAATGCT...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CCA 90 bp | CATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGAAATCAATCTTACAAAAGTaGGATCTCTCATATACCTTG | + |
|
Preference number: 4 (lower is better) Translates to: HEVAPWGSLDPSSKNNLKSILQK*DLSYTL Trigger: CAAGGTATATGAGAGATCCCACTTTTGTAAGATTGA...TTTCAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS GCA 90 bp | ACAATTAAATCGAGCCCGCAGCGCCCCAACGGGATGGCCTTGAGCTaGACCGGAGAGGGTCTCTCGAAGCCGGCCGCCCGCAGACCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TIKSSPQRPNGMALS*TGEGLSKPAARRPS Trigger: GGAGGGTCTGCGGGCGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGATTTAATTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS TCA 90 bp | CTTGGACAATTAAATCGAGCCCGCAGCGCCCCAACGGGATGGCCTTaGGCTGCACCGGAGAGGGTCTCTCGAAGCCGGCCGCCCGCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: LGQLNRARSAPTGWP*AAPERVSRSRPPAD Trigger: GTCTGCGGGCGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGATTTAATTGTCCAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS-3UTR CAA 90 bp | GGCCAGCTCTGCCAATCCGATGCATGTAAGTCTCCCAGTCTAACGGCACATCGACCCAACGGGATGGCCTaGAGCTGCACCGGAGAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: GQLCQSDACKSPSLTAHRPNGMA*SCTGEG Trigger: ACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGG...TCGATGTGCCGTTAGACTGGGAGACTTACATGCATCGGATTGGCAGAGCTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200078.5 |
||
| CDS-3UTR CAA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTGGGACAGCCCGACTCTaGTGGTGGAGCTGCCTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCGTARL*WWSCLF Trigger: GAAAAGGCAGCTCCACCACAAGAGTCGGGCTGTCCC...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CCA 90 bp | GACTCTTGTGGTGGAGCTGCCTTTTCTAGGACTCCACACTCTGAGTaGCTTTTCACAGGAAGCTTTGGTTTGCTGTGCTTTGGCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: DSCGGAAFSRTPHSE*LFTGSFGLLCFGLA Trigger: AGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGTCCTAGAAAAGGCAGCTCCACCACAAGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | TTAAAGATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTACCCAACGGGATGGCCTaGAGCTGCACCGGAGAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: LKISFGNSLHEVAPWGSLPNGMA*SCTGEG Trigger: ACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGG...TAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAATCTTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS TCA 90 bp | AGTTGTTTCCCTGTGACAGTCATACCAACTCTCTTCCTGGGGTTCTaGCTGTACTCGGTAAGAAGAACGCCGTGCTGGGTTTCTCCGACT | + |
|
Preference number: 5 (lower is better) Translates to: SCFPVTVIPTLFLGF*LYSVRRTPCWVSPT Trigger: AGTCGGAGAAACCCAGCACGGCGTTCTTCTTACCGAGTACAGTCAGAACCCCAGGAAGAGAGTTGGTATGACTGTCACAGGGAAACAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS TCA 90 bp | GTGGCTTTTCACAGGAAGCTTTGGTTTGCTGTGCTTTGGCCTGGCTaGCAGTGCAGATGCAGAAGTATTTCTAGGGGAAGGCGTTTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: VAFHRKLWFAVLWPG*QCRCRSISRGRRLV Trigger: AACCAAACGCCTTCCCCTAGAAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS GCA 90 bp | ACTCCACACTCTGAGTGGCTTTTCACAGGAAGCTTTGGTTTGCTGTaGTTTGGCCTGGCTGACAGTGCAGATGCAGAAGTATTTCTAGGG | + |
|
Preference number: 5 (lower is better) Translates to: TPHSEWLFTGSFGLL*FGLADSADAEVFLG Trigger: CCCTAGAAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTACAGGAAGCTTTGGTTaGCTGTGCTTTGGCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCTGSFG*LCFGLA Trigger: AGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGT...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGGCAGCCATCCAGCTaGGATGTCTCTGAGCATTCC | + |
|
Preference number: 5 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPRQPSS*DVSEHS Trigger: GGAATGCTCAGAGACATCCAAGCTGGATGGCTGCCT...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGATTTCCATTCTGAACTaGTTCCAGAGAGAGAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PQVLSSSSKMPPNPTCSRISILN*FQRERA Trigger: GGCCCTCTCTCTCTGGAACAAGTTCAGAATGGAAAT...CCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTCGCCTTCTTTATGCCTaGCCTTTACCTGGGTTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: RKPQVLSSSSKMPPNPTCRLLYA*PLPGFQ Trigger: CTGAAACCCAGGTAAAGGCAAGGCATAAAGAAGGCG...ACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CCA 90 bp | GTCCTTGAGCTGCAAGAATCGCTGTCACTCTCTGAGTCTCCAGACTaGCTACTACTCACCAACATCTGTGCTCTATCTTCAGAAACTCTA | + |
|
Preference number: 5 (lower is better) Translates to: VLELQESLSLSESPD*LLLTNICALSSETL Trigger: TAGAGTTTCTGAAGATAGAGCACAGATGTTGGTGAGTAGTAGCCAGTCTGGAGACTCAGAGAGTGACAGCGATTCTTGCAGCTCAAGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCATCTGGGAAGAAGTCCTaGAGCTGCAAGAATCGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPSGKKS*SCKNRC Trigger: ACAGCGATTCTTGCAGCTCAAGGACTTCTTCCCAGA...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCAGCAGCATAATACTCTaGCCATGCCCTGTAATACGC | + |
|
Preference number: 5 (lower is better) Translates to: KASSPLKFLQNATKPHLFSSIIL*PCPVIR Trigger: GCGTATTACAGGGCATGGCAAGAGTATTATGCTGCT...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAATTTTCACAGGAAGCTTaGGTTTGCTGTGCTTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KSSQVPPKCHQTPLVLGEFSQEA*VCCALA Trigger: GGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAA...TTCACCTAGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS TCA 90 bp | ATAGGCAGCCATCCAGCTTGGATGTCTCTGAGCATTCCAATAGTATaGATGGGAAGCAGCAGCATAATACTCTTGCCATGCCCTGTAATA | + |
|
Preference number: 5 (lower is better) Translates to: IGSHPAWMSLSIPIV*MGSSSIILLPCPVI Trigger: TATTACAGGGCATGGCAAGAGTATTATGCTGCTGCTTCCCATTCATACTATTGGAATGCTCAGAGACATCCAAGCTGGATGGCTGCCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTGTAAGAATTGACAACTaGGTAGTACTGCTTCAAACC | + |
|
Preference number: 5 (lower is better) Translates to: KPQVLSSSSKMPPNPTCSVRIDN*VVLLQT Trigger: GGTTTGAAGCAGTACTACCAAGTTGTCAATTCTTAC...AGAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | AAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCAGAAAACACCAAGGCTaGATTAAATGGGACTTTACT | + |
|
Preference number: 5 (lower is better) Translates to: KASSPLKFLQNATKPHLFRKHQG*IKWDFT Trigger: AGTAAAGTCCCATTTAATCAAGCCTTGGTGTTTTCT...GAACAAGTGGGGTTTGGTGGCATTTTGGAGGAACTTGAGAGGACTTGAGGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | ATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAAGTATCAGAAAAACTaGCAGTTGTTTCCCTGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: ISFGNSLHEVAPWGSLDPKYQKN*QLFPCD Trigger: GTCACAGGGAAACAACTGCAAGTTTTTCTGATACTT...TGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | TTAAAGATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTTTAGTAAATCCAATTTATTaGCTCCTGGAAACTGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LKISFGNSLHEVAPWGSLVNPIY*LLETAF Trigger: GAAGGCAGTTTCCAGGAGCAAATAAATTGGATTTAC...TAAAGACCCCCAAGGTGCCACTTCATGTAGGCTGTTCCCAAAAGAAATCTTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGGATATCAGCCAAATGTaGAGCTCTGCTGTGCAAATT | + |
|
Preference number: 5 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLDISQM*SSAVQI Trigger: AATTTGCACAGCAGAGCTCAACATTTGGCTGATATC...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS-3UTR CAA 90 bp | CTACATGAAGTGGCACCTTGGGGGTCTTTAGATCCAAGTTCTAAAAATAATCTGACTTTGCTTAGACCTTaGGTTAGCGCCTTCTTTATG | + |
|
Preference number: 5 (lower is better) Translates to: LHEVAPWGSLDPSSKNNLTLLRP*VSAFFM Trigger: CATAAAGAAGGCGCTAACCAAAGGTCTAAGCAAAGT...CAGATTATTTTTAGAACTTGGATCTAAAGACCCCCAAGGTGCCACTTCATGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS TCA 90 bp | AGTTCTATGAGCTGTTTAATTCTACCAGGAGATCCAACAGCAATATaGCACTTTTTAAGTCTGGTTTTGTCTTGTGATAATGGAGTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: SSMSCLILPGDPTAI*HFLSLVLSCDNGVP Trigger: AGGGACTCCATTATCACAAGACAAAACCAGACTTAAAAAGTGTCATATTGCTGTTGGATCTCCTGGTAGAATTAAACAGCTCATAGAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS GCA 72 bp | CCGCGGGCTCCGCCAGCACCACGTCCCCGGTACGTGTaGGCGGCCCGCCGATGTCGTGTGCGGTCCGCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: PRAPPAPRPRYV*AARRCRVRSAG Trigger: CCCAGCGGACCGCACACGACATCGGCGGGCCGCGCACACGTACCGGGGACGTGGTGCTGGCGGAGCCCGCGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS GCA 72 bp | GCCGATGTCGTGTGCGGTCCGCTGGGTCCACGGGGATaGCGGAGTCGGCTCCACAGCCTGCACCGGCGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: ADVVCGPLGPRG*RSRLHSLHRRG Trigger: GCCGCGCCGGTGCAGGCTGTGGAGCCGACTCCGGCATCCCCGTGGACCCAGCGGACCGCACACGACATCGGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS GCA 72 bp | TCGAGCCCGCAGCGCCCCAACGGGATGGCCTTGAGCTaGACCGGAGAGGGTCTCTCGAAGCCGGCCGCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SSPQRPNGMALS*TGEGLSKPAAR Trigger: GCGGGCGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS TCA 72 bp | TTAAATCGAGCCCGCAGCGCCCCAACGGGATGGCCTTaGGCTGCACCGGAGAGGGTCTCTCGAAGCCGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: LNRARSAPTGWP*AAPERVSRSRP Trigger: CGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGATTTAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS CAA 90 bp | GCTTGGACAATTAAATCGAGCCCGCAGCGCCCCAACGGGATGGCCTaGAGCTGCACCGGAGAGGGTCTCTCGAAGCCGGCCGCCCGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: AWTIKSSPQRPNGMA*SCTGEGLSKPAARR Trigger: TCTGCGGGCGGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGATTTAATTGTCCAAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS CAA 72 bp | ATTAAATCGAGCCCGCAGCGCCCCAACGGGATGGCCTaGAGCTGCACCGGAGAGGGTCTCTCGAAGCCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: IKSSPQRPNGMA*SCTGEGLSKPA Trigger: GGCCGGCTTCGAGAGACCCTCTCCGGTGCAGCTCAAGGCCATCCCGTTGGGGCGCTGCGGGCTCGATTTAAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS TCA 72 bp | CCTGTGACAGTCATACCAACTCTCTTCCTGGGGTTCTaGCTGTACTCGGTAAGAAGAACGCCGTGCTGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: PVTVIPTLFLGF*LYSVRRTPCWV Trigger: AACCCAGCACGGCGTTCTTCTTACCGAGTACAGTCAGAACCCCAGGAAGAGAGTTGGTATGACTGTCACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CCA 72 bp | GAGAATACACAAGTTTTTCCAGTGCCCGACTTAGCTTaGACAATTAAATCGAGCCCGCAGCGCCCCAACGGG | + |
|
Preference number: 6 (lower is better) Translates to: ENTQVFPVPDLA*TIKSSPQRPNG Trigger: CCCGTTGGGGCGCTGCGGGCTCGATTTAATTGTCCAAGCTAAGTCGGGCACTGGAAAAACTTGTGTATTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090680.11 ENSMUST00000200078.5 |
||
| CDS CAA 72 bp | CCACACTCTGAGTGGCTTTTCACAGGAAGCTTTGGTTaGCTGTGCTTTGGCCTGGCTGACAGTGCAGATGCA | + |
|
Preference number: 6 (lower is better) Translates to: PHSEWLFTGSFG*LCFGLADSADA Trigger: TGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CAA 90 bp | GTTACTGGAGGAATCCTCAACAGAGGTCTGAACAGAATTCTTAACTaGCTCTTCCAGCTGTGCGGGACAGCCCGACTCTTGTGGTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: VTGGILNRGLNRILN*LFQLCGTARLLWWS Trigger: GCTCCACCACAAGAGTCGGGCTGTCCCGCACAGCTGGAAGAGCAAGTTAAGAATTCTGTTCAGACCTCTGTTGAGGATTCCTCCAGTAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CAA 90 bp | CCTTTTCTAGGACTCCACACTCTGAGTGGCTTTTCACAGGAAGCTTaGGTTTGCTGTGCTTTGGCCTGGCTGACAGTGCAGATGCAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: PFLGLHTLSGFSQEA*VCCALAWLTVQMQK Trigger: CTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGTCCTAGAAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS TCA 72 bp | CACAGGAAGCTTTGGTTTGCTGTGCTTTGGCCTGGCTaGCAGTGCAGATGCAGAAGTATTTCTAGGGGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: HRKLWFAVLWPG*QCRCRSISRGR Trigger: CCTTCCCCTAGAAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CAA 72 bp | CAGTGCAGATGCAGAAGTATTTCTAGGGGAAGGCGTTaGGTTCCCAGGCGTTCTTTGAGACTGGAAGGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: QCRCRSISRGRR*VPRRSLRLEGS Trigger: AGAGCCTTCCAGTCTCAAAGAACGCCTGGGAACCAAACGCCTTCCCCTAGAAATACTTCTGCATCTGCACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CAA 72 bp | GGAATCCTCAACAGAGGTCTGAACAGAATTCTTAACTaGCTCTTCCAGCTGTGCGGGACAGCCCGACTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GILNRGLNRILN*LFQLCGTARLL Trigger: CAAGAGTCGGGCTGTCCCGCACAGCTGGAAGAGCAAGTTAAGAATTCTGTTCAGACCTCTGTTGAGGATTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
||
| CDS CAA 72 bp | CTCCACTTGAGTCGGGGTATCATTTCCATTCTGAACTaGTTCCAGAGAGAGAGGGCCACCCACAGGAGTACA | + |
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Preference number: 6 (lower is better) Translates to: LHLSRGIISILN*FQRERATHRST Trigger: TGTACTCCTGTGGGTGGCCCTCTCTCTCTGGAACAAGTTCAGAATGGAAATGATACCCCGACTCAAGTGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 90 bp | GTAAGAAGAACGCCGTGCTGGGTTTCTCCGACTTTGCTTAGACCTTaGGTTAGCGCCTTCTTTATGCCTTGCCTTTACCTGGGTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: VRRTPCWVSPTLLRP*VSAFFMPCLYLGFR Trigger: CCTGAAACCCAGGTAAAGGCAAGGCATAAAGAAGGCGCTAACCAAAGGTCTAAGCAAAGTCGGAGAAACCCAGCACGGCGTTCTTCTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CCA 72 bp | GGTGGAGCTGCCTTTTCTAGGACTCCACACTCTGAGTaGCTTTTCACAGGAAGCTTTGGTTTGCTGTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GGAAFSRTPHSE*LFTGSFGLLCF Trigger: AAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGTCCTAGAAAAGGCAGCTCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 90 bp | TCTAGGACTCCACACTCTGAGTGGCTTTTCACAGGAAGCTTTGGTTaGCTGTGCTTTGGCCTGGCTGACAGTGCAGATGCAGAAGTATTT | + |
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Preference number: 6 (lower is better) Translates to: SRTPHSEWLFTGSFG*LCFGLADSADAEVF Trigger: AAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACTCAGAGTGTGGAGTCCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CCA 72 bp | CTGCAAGAATCGCTGTCACTCTCTGAGTCTCCAGACTaGCTACTACTCACCAACATCTGTGCTCTATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LQESLSLSESPD*LLLTNICALSS Trigger: TGAAGATAGAGCACAGATGTTGGTGAGTAGTAGCCAGTCTGGAGACTCAGAGAGTGACAGCGATTCTTGCAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 72 bp | AGTGGCTTTTCACAGGAAGCTTTGGTTTGCTGTGCTTaGGCCTGGCTGACAGTGCAGATGCAGAAGTATTTC | + |
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Preference number: 6 (lower is better) Translates to: SGFSQEALVCCA*AWLTVQMQKYF Trigger: GAAATACTTCTGCATCTGCACTGTCAGCCAGGCCAAAGCACAGCAAACCAAAGCTTCCTGTGAAAAGCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 90 bp | ATGCCTTGCCTTTACCTGGGTTTCAGGGGCTTCTTGATACTCCACTaGAGTCGGGGTATCATTTCCATTCTGAACTTGTTCCAGAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: MPCLYLGFRGFLILH*SRGIISILNLFQRE Trigger: CTCTCTCTGGAACAAGTTCAGAATGGAAATGATACCCCGACTCAAGTGGAGTATCAAGAAGCCCCTGAAACCCAGGTAAAGGCAAGGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 90 bp | AGCGCCTTCTTTATGCCTTGCCTTTACCTGGGTTTCAGGGGCTTCTaGATACTCCACTTGAGTCGGGGTATCATTTCCATTCTGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: SAFFMPCLYLGFRGF*ILHLSRGIISILNL Trigger: CAAGTTCAGAATGGAAATGATACCCCGACTCAAGTGGAGTATCAAGAAGCCCCTGAAACCCAGGTAAAGGCAAGGCATAAAGAAGGCGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS TCA 72 bp | CATCCAGCTTGGATGTCTCTGAGCATTCCAATAGTATaGATGGGAAGCAGCAGCATAATACTCTTGCCATGC | + |
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Preference number: 6 (lower is better) Translates to: HPAWMSLSIPIV*MGSSSIILLPC Trigger: GCATGGCAAGAGTATTATGCTGCTGCTTCCCATTCATACTATTGGAATGCTCAGAGACATCCAAGCTGGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS CAA 72 bp | CTTTACCTGGGTTTCAGGGGCTTCTTGATACTCCACTaGAGTCGGGGTATCATTTCCATTCTGAACTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: LYLGFRGFLILH*SRGIISILNLF Trigger: GAACAAGTTCAGAATGGAAATGATACCCCGACTCAAGTGGAGTATCAAGAAGCCCCTGAAACCCAGGTAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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| CDS TCA 72 bp | AGCTGTTTAATTCTACCAGGAGATCCAACAGCAATATaGCACTTTTTAAGTCTGGTTTTGTCTTGTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: SCLILPGDPTAI*HFLSLVLSCDN Trigger: ATTATCACAAGACAAAACCAGACTTAAAAAGTGTCATATTGCTGTTGGATCTCCTGGTAGAATTAAACAGCT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090680.11 |
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