Pregenerated sensors for DDX19A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015023Ensembl transcript IDs: ENSMUST00000040416.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTAATTCCGAATGAGGTAGGTAGTCTCTACTCAGCCCGTGGTCTCTaGGGGGCCCGTCAGGCCTATGCCATGAAAGCACTAGACTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: VIPNEVGSLYSARGL*GARQAYAMKALDSQ Trigger: CTGGGAGTCTAGTGCTTTCATGGCATAGGCCTGACGGGCCCCTCAGAGACCACGGGCTGAGTAGAGACTACCTACCTCATTCGGAATTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR CCA 90 bp | GGGTGGTTGTTGAGTGGGGGTGAATGGAGAACAGAGTGTCTCTACTaGTTCTATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGAC | + |
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Preference number: 1 (lower is better) Translates to: GWLLSGGEWRTECLY*FYERQVSYSNVSPD Trigger: GTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATAGAACCAGTAGAGACACTCTGTTCTCCATTCACCCCCACTCAACAACCACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 90 bp | CTCCTGACCTCTATGAACTGCCTTTTCCTCTCATTTATTCAAGGTTaGGGATTGGTCAAAACAGAGGGAGCCAGCCAGTGGGCAACAAGG | + |
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Preference number: 1 (lower is better) Translates to: LLTSMNCLFLSFIQG*GLVKTEGASQWATR Trigger: CCTTGTTGCCCACTGGCTGGCTCCCTCTGTTTTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGTTCATAGAGGTCAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 90 bp | GTGAATGGAGAACAGAGTGTCTCTACTGGTTCTATGAGAGGCAGGTaGGCTATAGCAATGTCTCTCCTGACCTCTATGAACTGCCTTTTC | + |
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Preference number: 1 (lower is better) Translates to: VNGEQSVSTGSMRGR*AIAMSLLTSMNCLF Trigger: GAAAAGGCAGTTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATAGAACCAGTAGAGACACTCTGTTCTCCATTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 90 bp | AGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATaGAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACT | + |
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Preference number: 1 (lower is better) Translates to: SFCLVITSFLSCYVA*SPMDWNKQWSQAQT Trigger: AGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAACTGTCCAGGCAGGGAGCGCTaGGGGTGGCGCCAGCCCATG | + |
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Preference number: 2 (lower is better) Translates to: TRPAAQALATILPYKKNCPGRER*GWRQPM Trigger: CATGGGCTGGCGCCACCCTCAGCGCTCCCTGCCTGG...ACAGTTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR TCA 90 bp | ACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACTAGTTGTTGAGTGGGGGTaGATGGAGAACAGAGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: TWHEVPWIGTNNGARHRLVVEWG*MENRVS Trigger: AGACACTCTGTTCTCCATTCACCCCCACTCAACAAC...TAGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR GCA 90 bp | GGCAACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAAGGCCCGTCAGGCCTATaGCATGAAAGCACTAGACTC | + |
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Preference number: 2 (lower is better) Translates to: GNKACSPSISNHITIQEKGPSGL*HESTRL Trigger: GAGTCTAGTGCTTTCATGGCATAGGCCTGACGGGCC...TTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CCA 90 bp | GTTGTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACTTGAGTGGGGGTGAATaGAGAACAGAGTGTCTCTAC | + |
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Preference number: 2 (lower is better) Translates to: VVTWHEVPWIGTNNGARHLSGGE*RTECLY Trigger: GTAGAGACACTCTGTTCTCCATTCACCCCCACTCAA...GTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CCA 90 bp | ACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACTATTCAAGGTTGAGGATTaGTCAAAACAGAGGGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: TWHEVPWIGTNNGARHRLFKVED*SKQREP Trigger: TGGCTCCCTCTGTTTTGACCAATCCTCAACCTTGAA...TAGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR GCA 90 bp | GTTGTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACTTTCCCCCTACTATTTaGAGAAATTTGTCAAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: VVTWHEVPWIGTNNGARHFPPTI*RNLSSP Trigger: TGGACTTGACAAATTTCTGCAAATAGTAGGGGGAAA...GTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CCA 90 bp | GGCAACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAACTGGTCTGTAATTCATaGAGATCCTCCTGTCTCTAC | + |
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Preference number: 2 (lower is better) Translates to: GNKACSPSISNHITIQEKLVCNS*RSSCLY Trigger: GTAGAGACAGGAGGATCTCCATGAATTACAGACCAG...TTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGTTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CCA 90 bp | GTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGATTAAGTAAAACAGGCTaGTCTGTAATTCATGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: VTWHEVPWIGTNNGARHRLSKTG*SVIHGD Trigger: ATCTCCATGAATTACAGACCAGCCTGTTTTACTTAA...TCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR CCA 72 bp | TTCATGGAGATCCTCCTGTCTCTACCCTCCAAGTGCTaGGACCAAAAGTGTGCACCACCACACCAAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: FMEILLSLPSKC*DQKCAPPHQAR Trigger: CCTGGCTTGGTGTGGTGGTGCACACTTTTGGTCCCAGCACTTGGAGGGTAGAGACAGGAGGATCTCCATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR CCA 72 bp | TTGAGTGGGGGTGAATGGAGAACAGAGTGTCTCTACTaGTTCTATGAGAGGCAGGTGAGCTATAGCAATGTC | + |
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Preference number: 3 (lower is better) Translates to: LSGGEWRTECLY*FYERQVSYSNV Trigger: GACATTGCTATAGCTCACCTGCCTCTCATAGAACCAGTAGAGACACTCTGTTCTCCATTCACCCCCACTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CAA 90 bp | TCAGAGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATGAAGGGGGGTGGGTGGTTGTaGAGTGGGGGTGAATGGAGA | + |
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Preference number: 3 (lower is better) Translates to: SEFLLGHNFLSKLLRGMKGGGWL*SGGEWR Trigger: TCTCCATTCACCCCCACTCAACAACCACCCACCCCC...CTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACTCTGA 48% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR CCA 72 bp | ACTGCCTTTTCCTCTCATTTATTCAAGGTTGAGGATTaGTCAAAACAGAGGGAGCCAGCCAGTGGGCAACAA | + |
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Preference number: 3 (lower is better) Translates to: TAFSSHLFKVED*SKQREPASGQQ Trigger: TTGTTGCCCACTGGCTGGCTCCCTCTGTTTTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CAA 90 bp | GTTGTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACATTTCCCCCTACTATTaGCAGAAATTTGTCAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: VVTWHEVPWIGTNNGARHISPYY*QKFVKS Trigger: GGACTTGACAAATTTCTGCAAATAGTAGGGGGAAAT...GTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 72 bp | TCTATGAACTGCCTTTTCCTCTCATTTATTCAAGGTTaGGGATTGGTCAAAACAGAGGGAGCCAGCCAGTGG | + |
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Preference number: 3 (lower is better) Translates to: SMNCLFLSFIQG*GLVKTEGASQW Trigger: CCACTGGCTGGCTCCCTCTGTTTTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGTTCATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR-3UTR CAA 90 bp | ACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACTACTCATTTATTCAAGGTaGAGGATTGGTCAAAACAGA | + |
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Preference number: 3 (lower is better) Translates to: TWHEVPWIGTNNGARHRLLIYSR*RIGQNR Trigger: TCTGTTTTGACCAATCCTCAACCTTGAATAAATGAG...TAGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 72 bp | GAGGAAAGACACCTCCATCTTCAATGGGATTGTCTATaGCCCTCGAGTCTGAGATTTGCTGACTTCCATTTT | + |
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Preference number: 3 (lower is better) Translates to: EERHLHLQWDCL*PSSLRFADFHF Trigger: AAAATGGAAGTCAGCAAATCTCAGACTCGAGGGTCATAGACAATCCCATTGAAGATGGAGGTGTCTTTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR TCA 72 bp | TTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATaGAGTCCCATGGATTGGAACAAACAATGGAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: LVITSFLSCYVA*SPMDWNKQWSQ Trigger: CTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | GGCAACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAAGTAGAGCGGGGAGCTTaGGTCCCTCTGCAGGACTTC | + |
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Preference number: 4 (lower is better) Translates to: GNKACSPSISNHITIQEKVERGA*VPLQDF Trigger: GAAGTCCTGCAGAGGGACCCAAGCTCCCCGCTCTAC...TTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGTTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | AAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAACTGTGGCTGGGCAGCATCCTCTaGATGCGGATGCTCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: KACSPSISNHITIQEKLWLGSIL*MRMLWS Trigger: AGACCAGAGCATCCGCATCCAGAGGATGCTGCCCAG...CCACAGTTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | TGGTTCTATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGACCTCTATGAAGGCAGAGCATTCTCCTaGATCTTGGACGGTCGATTG | + |
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Preference number: 4 (lower is better) Translates to: WFYERQVSYSNVSPDLYEGRAFS*ILDGRL Trigger: CAATCGACCGTCCAAGATCCAGGAGAATGCTCTGCC...TTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATAGAACCA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR TCA 90 bp | TATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGACCTCTATGAACTGCCTAGCTTCAATTCTGGGTaGAACTTGCCCATCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: YERQVSYSNVSPDLYELPSFNSG*NLPICS Trigger: TGAGCAGATGGGCAAGTTTCACCCAGAATTGAAGCT...AGGCAGTTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR GCA 90 bp | ACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAACTGTACCAGACTGGGACTGTaGAATCAGGTTCTGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: TRPAAQALATILPYKKNCTRLGL*NQVLWG Trigger: CCCCCACAGAACCTGATTGCACAGTCCCAGTCTGGT...ACAGTTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | TATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGACCTCTATGAACTGCCTTGCAATCAGGTTCTGTaGGGGTTCAGCAAGCATCAT | + |
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Preference number: 4 (lower is better) Translates to: YERQVSYSNVSPDLYELPCNQVL*GFSKHH Trigger: ATGATGCTTGCTGAACCCCCACAGAACCTGATTGCA...AGGCAGTTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR TCA 90 bp | GGCAACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAAGACAGGCACAAACACTaGGGATATCTGTCTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GNKACSPSISNHITIQEKDRHKH*GYLSAG Trigger: ACCAGCAGACAGATATCCTCAGTGTTTGTGCCTGTC...TTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGTTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR GCA 90 bp | ACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACTAATTCTGGGTGAAACTTaGCCATCTGCTCAATCACTT | + |
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Preference number: 4 (lower is better) Translates to: TWHEVPWIGTNNGARHRLILGET*PSAQSL Trigger: AAGTGATTGAGCAGATGGGCAAGTTTCACCCAGAAT...TAGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR GCA 90 bp | TGCCGAGAACTCAGTTCTTTCCTCAAGACAGGGGCTCACTACATAGCTCTGGCTCTCTCTCCAATTTATTaGCTCGAACAGCATAAGCTA | + |
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Preference number: 4 (lower is better) Translates to: CRELSSFLKTGAHYIALALSPIY*LEQHKL Trigger: TAGCTTATGCTGTTCGAGGCAATAAATTGGAGAGAG...AGCCAGAGCTATGTAGTGAGCCCCTGTCTTGAGGAAAGAACTGAGTTCTCGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | TGGTTCTATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGACCTCTATGAAAGGATATCTGTCTGCTaGTTCCACTCTGCTGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: WFYERQVSYSNVSPDLYERISVC*FHSAEH Trigger: ATGCTCAGCAGAGTGGAACCAGCAGACAGATATCCT...TTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATAGAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR TCA 90 bp | TCAGAGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATGAAGACTCCTTGGAGAAGCTaGGGTTTCAGGCGAAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SEFLLGHNFLSKLLRGMKTPWRS*GFRRSS Trigger: AGAGCTTCGCCTGAAACCTCAGCTTCTCCAAGGAGT...CTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACTCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CCA 90 bp | GACCTCTATGAACTGCCTTTTCCTCTCATTTATTCAAGGTTGAGGATTGGTCAATTCCCAGTACCAGACTaGGACTGTGCAATCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: DLYELPFPLIYSRLRIGQFPVPD*DCAIRF Trigger: GAACCTGATTGCACAGTCCCAGTCTGGTACTGGGAA...TTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGTTCATAGAGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR TCA 90 bp | ACTGCCTTTTCCTCTCATTTATTCAAGGTTGAGGATTGGTCAAAACAGAGGGAGTGCTCACTCACCTTCTaGCCTCTCTCCAATTTATTG | + |
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Preference number: 4 (lower is better) Translates to: TAFSSHLFKVEDWSKQRECSLTF*PLSNLL Trigger: CAATAAATTGGAGAGAGGTCAGAAGGTGAGTGAGCA...CTCCCTCTGTTTTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR GCA 90 bp | ACAAGGCCTGCAGCCCAAGCATTAGCAACCATATTACCATACAAGAAAAACTGTTTCTCTTCCTTGATCTaGAAACTGCTCATCGACTTG | + |
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Preference number: 4 (lower is better) Translates to: TRPAAQALATILPYKKNCFSSLI*KLLIDL Trigger: CAAGTCGATGAGCAGTTTGCAGATCAAGGAAGAGAA...ACAGTTTTTCTTGTATGGTAATATGGTTGCTAATGCTTGGGCTGCAGGCCTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| 3UTR CAA 72 bp | TCAGAGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTaGTTACGTGGCATGAAGTCCCATGGATTGGAACAA | + |
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Preference number: 4 (lower is better) Translates to: SEFLLGHNFLSK*LRGMKSHGLEQ Trigger: TTGTTCCAATCCATGGGACTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACTCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | GTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGAAGTAGAGCGGGGAGCTaGGGTCCCTCTGCAGGACTT | + |
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Preference number: 5 (lower is better) Translates to: VTWHEVPWIGTNNGARHRSRAGS*GPSAGL Trigger: AAGTCCTGCAGAGGGACCCAAGCTCCCCGCTCTACT...TCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | TGCCGAGAACTCAGTTCTTTCCTCAAGACAGGGGCTCACTACATAGCTCTGGCTTTTAGCTTGATGATGTaGGGGTCTGGGACCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: CRELSSFLKTGAHYIALAFSLMM*GSGTTF Trigger: GAAGGTGGTCCCAGACCCCAACATCATCAAGCTAAA...AGCCAGAGCTATGTAGTGAGCCCCTGTCTTGAGGAAAGAACTGAGTTCTCGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | GTTGTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACTCCTCACGCTTTAGCTaGATGATGTTGGGGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: VVTWHEVPWIGTNNGARHSSRFS*MMLGSG Trigger: CCCAGACCCCAACATCATCAAGCTAAAGCGTGAGGA...GTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | GTTGTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACTCTGGGTTCCCATCCTaGTCCACAGGGAGGTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: VVTWHEVPWIGTNNGARHSGFPS*STGRSK Trigger: TTTTGACCTCCCTGTGGACAAGGATGGGAACCCAGA...GTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | TATGAGAGGCAGGTGAGCTATAGCAATGTCTCTCCTGACCTCTATGAACTGCCTATGCCAGCTCATATGTaGGGGACAGGCACAAACACT | + |
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Preference number: 5 (lower is better) Translates to: YERQVSYSNVSPDLYELPMPAHM*GTGTNT Trigger: AGTGTTTGTGCCTGTCCCCAACATATGAGCTGGCAT...AGGCAGTTCATAGAGGTCAGGAGAGACATTGCTATAGCTCACCTGCCTCTCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | ACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGACTATTGACTTTCTCTTCCTaGATCTGCAAACTGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: TWHEVPWIGTNNGARHRLLTFSS*ICKLLI Trigger: GATGAGCAGTTTGCAGATCAAGGAAGAGAAAGTCAA...TAGTCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | ACTGCCTTTTCCTCTCATTTATTCAAGGTTGAGGATTGGTCAAAACAGAGGGAGCATGGCGTAGACTCCTaGGAGAAGCTGAGGTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: TAFSSHLFKVEDWSKQREHGVDS*EKLRFQ Trigger: CTGAAACCTCAGCTTCTCCAAGGAGTCTACGCCATG...CTCCCTCTGTTTTGACCAATCCTCAACCTTGAATAAATGAGAGGAAAAGGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | TCAGAGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATGAAGAAACTGCTCATCGACTaGACAGCGGCTTCCTGCTCG | + |
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Preference number: 5 (lower is better) Translates to: SEFLLGHNFLSKLLRGMKKLLID*TAASCS Trigger: CGAGCAGGAAGCCGCTGTCAAGTCGATGAGCAGTTT...CTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACTCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | GTTACGTGGCATGAAGTCCCATGGATTGGAACAAACAATGGAGCCAGGCACAGAGTTTTGATAACACCATaGGTGTCTGCTTTGACTTTC | + |
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Preference number: 5 (lower is better) Translates to: VTWHEVPWIGTNNGARHRVLITP*VSALTF Trigger: GAAAGTCAAAGCAGACACCAATGGTGTTATCAAAAC...TCTGTGCCTGGCTCCATTGTTTGTTCCAATCCATGGGACTTCATGCCACGTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS-3UTR CAA 90 bp | TCAGAGTTTTTGCTTGGTCATAACTTCCTTTCTAAGTTGTTACGTGGCATGAAGGCATTCTCCTGGATCTaGGACGGTCGATTGAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: SEFLLGHNFLSKLLRGMKAFSWI*DGRLKP Trigger: GGGCTTCAATCGACCGTCCAAGATCCAGGAGAATGC...CTTCATGCCACGTAACAACTTAGAAAGGAAGTTATGACCAAGCAAAAACTCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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| CDS CAA 90 bp | CTCCTGGATCTTGGACGGTCGATTGAAGCCCATGGCGTAGACTCCTaGGAGAAGCTGAGGTTTCAGGCGAAGCTCTTCGAAGGACTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LLDLGRSIEAHGVDS*EKLRFQAKLFEGLH Trigger: GTGAAGTCCTTCGAAGAGCTTCGCCTGAAACCTCAGCTTCTCCAAGGAGTCTACGCCATGGGCTTCAATCGACCGTCCAAGATCCAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040416.8 |
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