Pregenerated sensors for DDX10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053289Ensembl transcript IDs: ENSMUST00000065630.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCTGAGTACGTTCCTTaGTGTTTCAAAACTCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSEYVP*CFKTQN Trigger: GTTTTGAGTTTTGAAACATCAAGGAACGTACTCAGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| 3UTR-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTAACAAGCATTTCCAATaGTGGGGAATAAGAACCTAT | + |
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Preference number: 2 (lower is better) Translates to: RSRALIYHVQGLGLIFNSNKHFQ*WGIRTY Trigger: ATAGGTTCTTATTCCCCACCATTGGAAATGCTTGTT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| 3UTR-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTGTTTTCAATTTCTTaGCCACATAGTAATATCCAG | + |
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Preference number: 2 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLFSIS*PHSNIQ Trigger: CTGGATATTACTATGTGGGCAAGAAATTGAAAACAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCGTCTGCTTCATCGTTaGGGAGGGAGGGGGCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSRLLHR*GGRGPW Trigger: CCAGGGCCCCCTCCCTCCCCAACGATGAAGCAGACG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCCCAGGCCATCTGTTaGAGTCCACTGCAGGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSQAIC*SPLQAV Trigger: TACCGCCTGCAGTGGACTTCAACAGATGGCCTGGGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTTCTCATCTGCTGCTaGCGGCCATGGAGAGCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLLICC*RPWRAR Trigger: CCTTGCTCTCCATGGCCGGCAGCAGCAGATGAGAAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGGCCCTGGGCGGAACTaGTTCTGTGACTGGATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSGPGRN*FCDWIL Trigger: AAGAATCCAGTCACAGAAGCAGTTCCGCCCAGGGCC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTCCGCTCCTTCTTTTaGTGCTGCCTGTGGCTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLRSFF*CCLWLC Trigger: ACACAGCCACAGGCAGCACCAAAAGAAGGAGCGGAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTATCTGTGGCCACTGCTaGACCAACTCCCCTTCATCA | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSICGHC*TNSPSS Trigger: TGATGAAGGGGAGTTGGTTCAGCAGTGGCCACAGAT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTATTCTTCTCATCTGCTaGTGCCGGCCATGGAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSILLIC*CRPWRA Trigger: TGCTCTCCATGGCCGGCAGCAGCAGATGAGAAGAAT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGCACAGAAACTTCCTTaGCCTTCTGTGCCTCCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSAQKLP*PSVPPQ Trigger: TTGAGGAGGCACAGAAGGTCAAGGAAGTTTCTGTGC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCTGTTGAAGTCCACTaGAGGCGGTATAAGGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSVEVH*RRYKAS Trigger: GGAAGCCTTATACCGCCTGCAGTGGACTTCAACAGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTACCGTTTCCCACTTaGCCTTCTTTCCATGACGAC | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLPFPT*PSFHDD Trigger: GTCGTCATGGAAAGAAGGCCAAGTGGGAAACGGTAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGTGCCTCCTCAATACTaGCAACAGATTCAGTGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSVPPQY*QQIQCE Trigger: CTCACACTGAATCTGTTGTCAGTATTGAGGAGGCAC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTCTGGAGAAGCTGCTaGACCATTCCTTGCTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSFWRSC*TIPCSS Trigger: AGAAGAGCAAGGAATGGTGCAGCAGCTTCTCCAGAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTAAATCTTATCCGCGGTaGCACAGCAAGACCAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSKSYPR*HSKTKR Trigger: TCTCTTGGTCTTGCTGTGGCACCGCGGATAAGATTT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCAGTTCTCGAGTAGGTaGTATTATCAGAACTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSQFSSR*YYQNSQ Trigger: CTGGGAGTTCTGATAATATCACCTACTCGAGAACTG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTACCCTATACAGATACTaGACCTCTTTGCAACTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSTLYRY*TSLQLE Trigger: CTCCAGTTGCAAAGAGGTTCAGTATCTGTATAGGGT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTGCTTCTCCAGTTTCTaGAGAAATCTTATCCGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSCFSSF*RNLIRG Trigger: ACCGCGGATAAGATTTCTTCAGAAACTGGAGAAGCA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGCGGAACTGCTTCTGTaGCTGGATTCTTTACCAATT | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSAELLL*LDSLPI Trigger: AATTGGTAAAGAATCCAGTCACAGAAGCAGTTCCGC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTAGCACATCTTTACCTTaGAAAGCCAACCCTATGGTC | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSTSLP*KANPMV Trigger: GACCATAGGGTTGGCTTTGCAAGGTAAAGATGTGCT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTATCCAGTCCCCTAGCTaGAATATCAGTGGCAAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSIQSPS*NISGKK Trigger: CTTTTTGCCACTGATATTGCAGCTAGGGGACTGGAT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTCCTTGACCTTCTGTaGCTCCTCAATACTGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSFLDLL*LLNTDN Trigger: GTTGTCAGTATTGAGGAGGCACAGAAGGTCAAGGAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTCTTCCTTGTTTCCTaGTTCTTCTTGGTGTCACTC | + |
|
Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLFLVS*FFLVSL Trigger: GAGTGACACCAAGAAGAAGCAGGAAACAAGGAAGAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTACCAATTCTGTGCTaGGCTGCTTCTCCAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLPILC*AASPVS Trigger: AGAAACTGGAGAAGCAGCCCAGCACAGAATTGGTAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTCACTGACATAAGCTaGAGATTCGTCTGCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLTDIS*RFVCFI Trigger: GATGAAGCAGACGAATCTCCAGCTTATGTCAGTGAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR TCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCCAGCTGAAAAATCATaGTTCTTCCCTACTTTGCGT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSPAEKS*FFPTLR Trigger: ACGCAAAGTAGGGAAGAATCATGATTTTTCAGCTGG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGAAGTCGACCTGGTGTaGAAACCAGTATGTTTATGT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSEVDLV*KPVCLC Trigger: ACATAAACATACTGGTTTGCACACCAGGTCGACTTC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCTTCAGAACTTCTGTaGTTGTCAGGATCTGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSSELL*LSGSGS Trigger: ACTTCCAGATCCTGACAAGCACAGAAGTTCTGAAGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCAGATTTGGTCTGTGTaGCTGAGAACAGTAAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSQIWSV*LRTVKS Trigger: AGACTTTACTGTTCTCAGCCACACAGACCAAATCTG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCTCTGTTTAAGAACTaGACAGAAACTTCCTTGACC | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSLFKN*TETSLT Trigger: GGTCAAGGAAGTTTCTGTGCAGTTCTTAAACAGAGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCTTTCCCGGTGCTTTaGCTTAATTTTCTTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSFPVL*LNFLPV Trigger: TACAGGAAGAAAATTAAGGCAAAGCACCGGGAAAGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGTGTCACTCATCTTATaGTTTGTATCTTCACTCTCC | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSVSLIL*FVSSLS Trigger: GGAGAGTGAAGATACAAACCATAAGATGAGTGACAC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTTCCTGCTTCTTCTTaGTGTCACTCATCTTATGGT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSFPASS*CHSSYG Trigger: ACCATAAGATGAGTGACACCAAGAAGAAGCAGGAAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR GCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGATACTGAACCTCTTTaGAACTGGAGAAAAACACAA | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSDTEPL*NWRKTQ Trigger: TTGTGTTTTTCTCCAGTTGCAAAGAGGTTCAGTATC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTAACTGCTTCTGTGACTaGATTCTTTACCAATTCTGT | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSNCFCD*ILYQFC Trigger: ACAGAATTGGTAAAGAATCCAGTCACAGAAGCAGTT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CCA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTAACATCTGAAGATTaGTGGCATGAAAACATATTG | + |
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Preference number: 4 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLTSED*WHENIL Trigger: CAATATGTTTTCATGCCACCAATCTTCAGATGTTAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS GCA 90 bp | GCTGCCGGCCATGGAGAGCAAGGATCGAGATCCCTGGGCGCAGCCTaGAGAACACCCTATACAGATACTGAACCTCTTTGCAACTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: AAGHGEQGSRSLGAA*RTPYTDTEPLCNWR Trigger: TCTCCAGTTGCAAAGAGGTTCAGTATCTGTATAGGGTGTTCTGCAGGCTGCGCCCAGGGATCTCGATCCTTGCTCTCCATGGCCGGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCGTCTGCTTCATCGTaGGGGAGGGAGGGGGCCCTG | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSSASS*GREGAL Trigger: CAGGGCCCCCTCCCTCCCCAACGATGAAGCAGACGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CCA 90 bp | CGACTCTTCAGAACTTCTGTGCTTGTCAGGATCTGGAAGTGTACTTaGATCAAACCCACCATCATCTTCATCACTCCAGTCCAGAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: RLFRTSVLVRIWKCT*IKPTIIFITPVQKG Trigger: GCCTTTCTGGACTGGAGTGATGAAGATGATGGTGGGTTTGATCCAAGTACACTTCCAGATCCTGACAAGCACAGAAGTTCTGAAGAGTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTCTCCCAGGCCATCTGTaGAAGTCCACTGCAGGCGGT | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSLPGHL*KSTAGG Trigger: ACCGCCTGCAGTGGACTTCAACAGATGGCCTGGGAG...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGCTTCTCCATCTTCTTaGTACCTGGCAGTTCTACCA | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSASPSS*YLAVLP Trigger: TGGTAGAACTGCCAGGTACAAAGAAGATGGAGAAGC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTAAGCACATCTTTACCTaGCAAAGCCAACCCTATGGT | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSKHIFT*QSQPYG Trigger: ACCATAGGGTTGGCTTTGCAAGGTAAAGATGTGCTT...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGATCTGGAAGTGTACTaGGATCAAACCCACCATCAT | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSDLEVY*DQTHHH Trigger: ATGATGGTGGGTTTGATCCAAGTACACTTCCAGATC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTGTTTCCTGCTTCTTCTaGGTGTCACTCATCTTATGG | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSVSCFF*VSLILW Trigger: CCATAAGATGAGTGACACCAAGAAGAAGCAGGAAAC...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTTGCTTTGTCTAGGTaGATACCACCAGTGTCATCT | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSFALSR*IPPVSS Trigger: AGATGACACTGGTGGTATCAACCTAGACAAAGCAAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTCATCGTCTTCAGTGTaGTTTCTCTTCCTTGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSSSSSV*FLFLVS Trigger: GGAAACAAGGAAGAGAAACAACACTGAAGACGATGA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS-3UTR CAA 90 bp | AGGAGTAGAGCTCTTATTTACCATGTACAAGGCCTTGGTTTAATCTTCAACAGTTTTTCTGGATTGATTTaGATCTCCTTCACAGGTACT | + |
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Preference number: 5 (lower is better) Translates to: RSRALIYHVQGLGLIFNSFSGLI*ISFTGT Trigger: AGTACCTGTGAAGGAGATCAAAATCAATCCAGAAAA...ACTGTTGAAGATTAAACCAAGGCCTTGTACATGGTAAATAAGAGCTCTACTCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CCA 72 bp | CTGCTGCCGGCCATGGAGAGCAAGGATCGAGATCCCTaGGCGCAGCCTGCAGAACACCCTATACAGATACTG | + |
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Preference number: 6 (lower is better) Translates to: LLPAMESKDRDP*AQPAEHPIQIL Trigger: CAGTATCTGTATAGGGTGTTCTGCAGGCTGCGCCCAGGGATCTCGATCCTTGCTCTCCATGGCCGGCAGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS GCA 72 bp | CATGGAGAGCAAGGATCGAGATCCCTGGGCGCAGCCTaGAGAACACCCTATACAGATACTGAACCTCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: HGEQGSRSLGAA*RTPYTDTEPLC Trigger: GCAAAGAGGTTCAGTATCTGTATAGGGTGTTCTGCAGGCTGCGCCCAGGGATCTCGATCCTTGCTCTCCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CCA 72 bp | TTTGTGAAGGACGGACATCTTCTCACTGACATAAGCTaGAGATTCGTCTGCTTCATCGTTGGGGAGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: FVKDGHLLTDIS*RFVCFIVGEGG Trigger: CCCTCCCTCCCCAACGATGAAGCAGACGAATCTCCAGCTTATGTCAGTGAGAAGATGTCCGTCCTTCACAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS GCA 72 bp | CAGTCCCCTAGCTGCAATATCAGTGGCAAAAAGTACTaGGGCCCTCTTTCGGACAAATTCATTGTAGACCTC | + |
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Preference number: 6 (lower is better) Translates to: QSPSCNISGKKY*GPLSDKFIVDL Trigger: GAGGTCTACAATGAATTTGTCCGAAAGAGGGCCGCAGTACTTTTTGCCACTGATATTGCAGCTAGGGGACTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CAA 90 bp | CCGACTCTTCAGAACTTCTGTGCTTGTCAGGATCTGGAAGTGTACTaGGATCAAACCCACCATCATCTTCATCACTCCAGTCCAGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: PTLQNFCACQDLEVY*DQTHHHLHHSSPER Trigger: CCTTTCTGGACTGGAGTGATGAAGATGATGGTGGGTTTGATCCAAGTACACTTCCAGATCCTGACAAGCACAGAAGTTCTGAAGAGTCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CCA 72 bp | AGAACTTCTGTGCTTGTCAGGATCTGGAAGTGTACTTaGATCAAACCCACCATCATCTTCATCACTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: RTSVLVRIWKCT*IKPTIIFITPV Trigger: GACTGGAGTGATGAAGATGATGGTGGGTTTGATCCAAGTACACTTCCAGATCCTGACAAGCACAGAAGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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| CDS CAA 72 bp | CAGAACTTCTGTGCTTGTCAGGATCTGGAAGTGTACTaGGATCAAACCCACCATCATCTTCATCACTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: QNFCACQDLEVY*DQTHHHLHHSS Trigger: ACTGGAGTGATGAAGATGATGGTGGGTTTGATCCAAGTACACTTCCAGATCCTGACAAGCACAGAAGTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065630.8 |
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