Pregenerated sensors for DDT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001666Ensembl transcript IDs: ENSMUST00000001716.8, ENSMUST00000172820.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTTATTTGCTCTCTTTCAATTATTCACGAGGCTGGGGAAGAGAAAAATGGACCACCGGGAGGGCCTCTCTaGAAGGGCTCTGGCCCGGTT | + |
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Preference number: 2 (lower is better) Translates to: FICSLSIIHEAGEEKNGPPGGPL*KGSGPV Trigger: AACCGGGCCAGAGCCCTTCCAGAGAGGCCCTCCCGG...TGGTCCATTTTTCTCTTCCCCAGCCTCGTGAATAATTGAAAGAGAGCAAATAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| 3UTR CCA 72 bp | ATCTACCAGGCCACGATTCTGCCGGGAGGGCCTCTCTaGAAGGGCTCTGGCCCGGTTCGAGCAAACACCCTG | + |
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Preference number: 3 (lower is better) Translates to: IYQATILPGGPL*KGSGPVRANTL Trigger: CAGGGTGTTTGCTCGAACCGGGCCAGAGCCCTTCCAGAGAGGCCCTCCCGGCAGAATCGTGGCCTGGTAGAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| 3UTR CCA 72 bp | CACGATTCTGCCGGGAGGGCCTCTCTGGAAGGGCTCTaGCCCGGTTCGAGCAAACACCCTGGGTTCTTTGTT | + |
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Preference number: 3 (lower is better) Translates to: HDSAGRASLEGL*PGSSKHPGFFV Trigger: AACAAAGAACCCAGGGTGTTTGCTCGAACCGGGCCAGAGCCCTTCCAGAGAGGCCCTCCCGGCAGAATCGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| CDS-3UTR CCA 90 bp | CCACGATTCTGCCGGGAGGGCCTCTCTGGAAGGGCTCTGGCCCGGTTCGAGCAAGTTTGTCCAGGATGGTaGCTGTGGCCGCACACAGCC | + |
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Preference number: 4 (lower is better) Translates to: PRFCREGLSGRALARFEQVCPGW*LWPHTA Trigger: GGCTGTGTGCGGCCACAGCCACCATCCTGGACAAAC...TTGCTCGAACCGGGCCAGAGCCCTTCCAGAGAGGCCCTCCCGGCAGAATCGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001716.8 |
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| CDS-3UTR CCA 90 bp | CATCCTATCTACCAGGCCACGATTCTGCCGGGAGGGCCTCTCTGGAAGGGCTCTGAGCACAAGGCTCTGTaGATTTGTTCATCAACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: HPIYQATILPGGPLWKGSEHKAL*ICSSTG Trigger: CCCTGTTGATGAACAAATCCACAGAGCCTTGTGCTC...AGAGCCCTTCCAGAGAGGCCCTCCCGGCAGAATCGTGGCCTGGTAGATAGGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| CDS-3UTR CCA 90 bp | TCTCTTTCAATTATTCACGAGGCTGGGGAAGAGAAAAATGGACCACTGAAGTCGCGGGTTTGTCCAGGATaGTGGCTGTGGCCGCACACA | + |
|
Preference number: 4 (lower is better) Translates to: SLSIIHEAGEEKNGPLKSRVCPG*WLWPHT Trigger: TGTGTGCGGCCACAGCCACCATCCTGGACAAACCCG...CGACTTCAGTGGTCCATTTTTCTCTTCCCCAGCCTCGTGAATAATTGAAAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001716.8 |
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| CDS-3UTR TCA 90 bp | TTTATTTGCTCTCTTTCAATTATTCACGAGGCTGGGGAAGAGAAAAATGGACCAGAAGAGACCAGAAGGTaGGCACAAGGCTCTGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: FICSLSIIHEAGEEKNGPEETRR*AQGSVD Trigger: ATCCACAGAGCCTTGTGCTCACCTTCTGGTCTCTTC...TGGTCCATTTTTCTCTTCCCCAGCCTCGTGAATAATTGAAAGAGAGCAAATAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| CDS-3UTR TCA 90 bp | ATTTATTTGCTCTCTTTCAATTATTCACGAGGCTGGGGAAGAGAAAAATGGACCGAAGAGACCAGAAGGTaGGCACAAGGCTCTGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: IYLLSFNYSRGWGREKWTEETRR*AQGSVD Trigger: ATCCACAGAGCCTTGTGCTCACCTTCTGGTCTCTTC...GGTCCATTTTTCTCTTCCCCAGCCTCGTGAATAATTGAAAGAGAGCAAATAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001716.8 ENSMUST00000172820.2 |
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| CDS-3UTR CAA 90 bp | GGATTTACCATCCTATCTACCAGGCCACGATTCTGCCGGGAGGGCCTCTCTGGACAAGGCTCTGTGGATTaGTTCATCAACAGGGTCATG | + |
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Preference number: 5 (lower is better) Translates to: GFTILSTRPRFCREGLSGQGSVD*FINRVM Trigger: CATGACCCTGTTGATGAACAAATCCACAGAGCCTTG...TCCAGAGAGGCCCTCCCGGCAGAATCGTGGCCTGGTAGATAGGATGGTAAATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001716.8 |
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| CDS-3UTR CAA 90 bp | TTTATTTGCTCTCTTTCAATTATTCACGAGGCTGGGGAAGAGAAAAATGGACCAACGCGGTCTTCGGGTTaGTCCAGGATGGTGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: FICSLSIIHEAGEEKNGPTRSSG*SRMVAV Trigger: CACAGCCACCATCCTGGACAAACCCGAAGACCGCGT...TGGTCCATTTTTCTCTTCCCCAGCCTCGTGAATAATTGAAAGAGAGCAAATAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001716.8 |
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| CDS CCA 72 bp | CGATGGAAGAGACCAGAAGGTGAGCACAAGGCTCTGTaGATTTGTTCATCAACAGGGTCATGCCAGGTCGTA | + |
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Preference number: 6 (lower is better) Translates to: RWKRPEGEHKAL*ICSSTGSCQVV Trigger: TACGACCTGGCATGACCCTGTTGATGAACAAATCCACAGAGCCTTGTGCTCACCTTCTGGTCTCTTCCATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001716.8 |
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