RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DDRGK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068290

Ensembl transcript IDs: ENSMUST00000089559.11, ENSMUST00000134044.8, ENSMUST00000135072.2

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTCAATCACACCTGTTAGAGTCCCCTCCGTCAGCAGGTCCTGGATaGGGTTTATGGCGTCCTGAGTCCTTAGGCCCATCTGGAAAGCCA +
Preference number: 1 (lower is better)
Translates to: RQSHLLESPPSAGPG*GLWRPESLGPSGKP
Trigger: TGGCTTTCCAGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCTAACAGGTGTGATTGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR CCA 90 bp CACCTGTTAGAGTCCCCTCCGTCAGCAGGTCCTGGATGCGGTTTATaGCGTCCTGAGTCCTTAGGCCCATCTGGAAAGCCAGATCTTCCA +
Preference number: 1 (lower is better)
Translates to: HLLESPPSAGPGCGL*RPESLGPSGKPDLP
Trigger: TGGAAGATCTGGCTTTCCAGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCTAACAGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR TCA 90 bp AGAGTCCCCTCCGTCAGCAGGTCCTGGATGCGGTTTATGGCGTCCTaGGTCCTTAGGCCCATCTGGAAAGCCAGATCTTCCAAAAGCACA +
Preference number: 1 (lower is better)
Translates to: RVPSVSRSWMRFMAS*VLRPIWKARSSKST
Trigger: TGTGCTTTTGGAAGATCTGGCTTTCCAGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR GCA 90 bp ATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTaGCCCAAGACGGCATTAGGGAAGGATGAAGACACATGTAGGCCA +
Preference number: 1 (lower is better)
Translates to: IHRPLIHNFLVIFHP*PKTALGKDEDTCRP
Trigger: TGGCCTACATGTGTCTTCATCCTTCCCTAATGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
3UTR CCA 90 bp GGACTTCTTGATGTAATTGATGAATTCTGTCAGGAAGCTGTGAGATaGCACTCGACTCGCTTCTCAGTACACAGTCCCAAGTGTCTAAGG +
Preference number: 1 (lower is better)
Translates to: GLLDVIDEFCQEAVR*HSTRFSVHSPKCLR
Trigger: CCTTAGACACTTGGGACTGTGTACTGAGAAGCGAGTCGAGTGCCATCTCACAGCTTCCTGACAGAATTCATCAATTACATCAAGAAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR CCA 72 bp GAGTCCCCTCCGTCAGCAGGTCCTGGATGCGGTTTATaGCGTCCTGAGTCCTTAGGCCCATCTGGAAAGCCA +
Preference number: 3 (lower is better)
Translates to: ESPPSAGPGCGL*RPESLGPSGKP
Trigger: TGGCTTTCCAGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR GCA 72 bp CACCTGTTAGAGTCCCCTCCGTCAGCAGGTCCTGGATaGGGTTTATGGCGTCCTGAGTCCTTAGGCCCATCT +
Preference number: 3 (lower is better)
Translates to: HLLESPPSAGPG*GLWRPESLGPS
Trigger: AGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCTAACAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR TCA 72 bp TCCGTCAGCAGGTCCTGGATGCGGTTTATGGCGTCCTaGGTCCTTAGGCCCATCTGGAAAGCCAGATCTTCC +
Preference number: 3 (lower is better)
Translates to: SVSRSWMRFMAS*VLRPIWKARSS
Trigger: GGAAGATCTGGCTTTCCAGATGGGCCTAAGGACTCAGGACGCCATAAACCGCATCCAGGACCTGCTGACGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR CCA 72 bp GATGTAATTGATGAATTCTGTCAGGAAGCTGTGAGATaGCACTCGACTCGCTTCTCAGTACACAGTCCCAAG +
Preference number: 3 (lower is better)
Translates to: DVIDEFCQEAVR*HSTRFSVHSPK
Trigger: CTTGGGACTGTGTACTGAGAAGCGAGTCGAGTGCCATCTCACAGCTTCCTGACAGAATTCATCAATTACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
3UTR TCA 72 bp CTGAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTaGGGTCTTCTACAAACAACAAGCTCAGCAGTATTC +
Preference number: 3 (lower is better)
Translates to: LRFILPAYLRPQ*GLLQTTSSAVF
Trigger: GAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp CCCTGCCCCAAGACGGCATTAGGGAAGGATGAAGACACATGTAGGCCACAGGATCCTGGGCAAGCTCTGTaGTGGACACCCGGCCCCGCT +
Preference number: 4 (lower is better)
Translates to: PCPKTALGKDEDTCRPQDPGQAL*WTPGPA
Trigger: AGCGGGGCCGGGTGTCCATCACAGAGCTTGCCCAGG...ATCCTGTGGCCTACATGTGTCTTCATCCTTCCCTAATGCCGTCTTGGGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp ACACCTGTTAGAGTCCCCTCCGTCAGCAGGTCCTGGATGCGGTTTATGGCGTCCAGTGATGGGCCCACCTaGTCCTCAGTCATGGTTTCG +
Preference number: 4 (lower is better)
Translates to: TPVRVPSVSRSWMRFMASSDGPT*SSVMVS
Trigger: CGAAACCATGACTGAGGAGCAGGTGGGCCCATCACT...GGACGCCATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCTAACAGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
CDS-3UTR CCA 90 bp CAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCTGGGCAGGGAGGTCCTaGCCCCAGGAGATGAGGGAG +
Preference number: 4 (lower is better)
Translates to: QAFNPQLSGHIPSLPQDGWAGRS*PQEMRE
Trigger: CTCCCTCATCTCCTGGGGCCAGGACCTCCCTGCCCA...GCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp ATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGTCCCAGGCCACTCGCTaGGCTCGACGCTGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: IHRPLIHNFLVIFHPCPKSQATR*ARRWAC
Trigger: ACAGGCCCAGCGTCGAGCCCAGCGAGTGGCCTGGGA...CTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp ACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTTAGGCCCCGCTGTCGGATaGAATTGGCCACGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: TPVRSSTNNKLSSIHRPLGPAVG*NWPRQP
Trigger: TGGCTGCCGTGGCCAATTTCATCCGACAGCGGGGCC...TAAAGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp TCCTTAGGCCCATCTGGAAAGCCAGATCTTCCAAAAGCACAACCTTGGACTTCTCAGATCTCCCAGGAGTaGTGGGCCCACCTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: SLGPSGKPDLPKAQPWTSQISQE*WAHLLL
Trigger: GAGGAGCAGGTGGGCCCATCACTCCTGGGAGATCTG...AGAAGTCCAAGGTTGTGCTTTTGGAAGATCTGGCTTTCCAGATGGGCCTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
CDS-3UTR CCA 90 bp GAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTGAGGTCTTCTACAAACAACCGCTGGGCTCGACGCTaGGCCTGTAGACGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: EVYFTCLSETPVRSSTNNRWARR*ACRRLP
Trigger: GGGCAGCCGTCTACAGGCCCAGCGTCGAGCCCAGCG...GTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp CAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCTCCGTCAGCAGGTCCTaGATGCGGTTTATGGCGTCC +
Preference number: 4 (lower is better)
Translates to: QAFNPQLSGHIPSLPQDGSVSRS*MRFMAS
Trigger: GGACGCCATAAACCGCATCCAGGACCTGCTGACGGA...GCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCAACGTTCAGCCTCCTCTaGCTCTCGCTGAGCCTTTCG +
Preference number: 4 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTATFSLL*LSLSLS
Trigger: CGAAAGGCTCAGCGAGAGGCAGAGGAGGCTGAACGT...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp CAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCTCAGCAGGTCCTGGATaGGGTTTATGGCGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: QAFNPQLSGHIPSLPQDGSAGPG*GLWRPE
Trigger: CTCAGGACGCCATAAACCGCATCCAGGACCTGCTGA...GCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCAAGGGAGTTGCTGGCCTaGGCAAGCTCTGTGATGGAC +
Preference number: 4 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTARELLA*ASSVMD
Trigger: GTCCATCACAGAGCTTGCCCAGGCCAGCAACTCCCT...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp TCAATCACACCTGTTAGAGTCCCCTCCGTCAGCAGGTCCTGGATGCGGTTTATGCACACACTACCCTCATaGCACAGATCTCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: SITPVRVPSVSRSWMRFMHTLPS*HRSPRS
Trigger: ACTCCTGGGAGATCTGTGCCATGAGGGTAGTGTGTG...CATAAACCGCATCCAGGACCTGCTGACGGAGGGGACTCTAACAGGTGTGATTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
CDS-3UTR TCA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCATCCTCTGCCTCTCGCTaGGCCTTTCGAGCCTGTTTT +
Preference number: 4 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTASSASR*AFRACF
Trigger: AAAACAGGCTCGAAAGGCTCAGCGAGAGGCAGAGGA...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp GAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTGAGGTCTTCTACAAACAACCCGCCCGACCCCGGCTaGGAGTCAGGAAGAGGATCA +
Preference number: 4 (lower is better)
Translates to: EVYFTCLSETPVRSSTNNPPDPG*ESGRGS
Trigger: TGATCCTCTTCCTGACTCGCAGCCGGGGTCGGGCGG...GTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp GAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTGAGGTCTTCTACAAACAACGCGGCCTACCTGGCCTaGTCCTGCCCTCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: EVYFTCLSETPVRSSTNNAAYLA*SCPLFL
Trigger: GAGGAAGAGAGGGCAGGAGCAGGCCAGGTAGGCCGC...GTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp GAGACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTGTTCTTCAGACTCCTaGGGCAAAGAGCGGCCTACC +
Preference number: 4 (lower is better)
Translates to: ETPVRSSTNNKLSSIHRPCSSDS*GKERPT
Trigger: GGTAGGCCGCTCTTTGCCCCAGGAGTCTGAAGAACA...AGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp GAGACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTCTGTCAGGAAGCTGTaGGACTGCTCCTCAGTCATG +
Preference number: 4 (lower is better)
Translates to: ETPVRSSTNNKLSSIHRPSVRKL*DCSSVM
Trigger: CATGACTGAGGAGCAGTCTCACAGCTTCCTGACAGA...AGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp ATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGTACCTGGCCTGCTCCTaGCCTCTCTTCCTCATTGTG +
Preference number: 4 (lower is better)
Translates to: IHRPLIHNFLVIFHPCPKYLACS*PLFLIV
Trigger: CACAATGAGGAAGAGAGGGCAGGAGCAGGCCAGGTA...CTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCAATTTTCCCTGTTGGGTaGACTTCTGCTGGCTTCTCA +
Preference number: 4 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTAIFPVG*TSAGFS
Trigger: TGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAAT...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp GAGACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTTCTTCCTCCTGGGCTaGAATAACAGTTTGACCCAC +
Preference number: 4 (lower is better)
Translates to: ETPVRSSTNNKLSSIHRPFFLLG*NNSLTH
Trigger: GTGGGTCAAACTGTTATTCCAGCCCAGGAGGAAGAA...AGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp GAGACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTGGGTGAACTTCTGCTaGCTTCTCAATGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ETPVRSSTNNKLSSIHRPWVNFC*LLNAFF
Trigger: GAAGAAGGCATTGAGAAGCCAGCAGAAGTTCACCCA...AGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp GAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTGAGGTCTTCTACAAACAACTCCGACGCCGGGGTCTaGTTCCAGTTCTCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: EVYFTCLSETPVRSSTNNSDAGV*FQFSVL
Trigger: AAGAACAGAGAACTGGAAGCAGACCCCGGCGTCGGA...GTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp GACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTTGTCCTTAGGCCCATCTaGAAAGCCAGATCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: DPSEVFYKQQAQQYSQAFVLRPI*KARSSK
Trigger: TTTGGAAGATCTGGCTTTCCAGATGGGCCTAAGGAC...AAAGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCAGGCAGCCAGTTCCTCTaGGGTTATGTAGATAAACTT +
Preference number: 4 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTAGSQFL*GYVDKL
Trigger: AAGTTTATCTACATAACCCCAGAGGAACTGGCTGCC...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR TCA 90 bp CTCAGCAGTATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCGCTGGAATAACAGTTTaGCCCACATTCTCATCCCCG +
Preference number: 4 (lower is better)
Translates to: LSSIHRPLIHNFLVIFHPAGITV*PTFSSP
Trigger: CGGGGATGAGAATGTGGGTCAAACTGTTATTCCAGC...GGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAATACTGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CCA 90 bp ATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGGCTTCCGTAGTTTCTTaGCTCCAATTTTCCCTGTTG +
Preference number: 4 (lower is better)
Translates to: IHRPLIHNFLVIFHPCPKASVVS*LQFSLL
Trigger: CAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGC...CTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR GCA 90 bp GAGGTTTATTTTACCTGCTTATCTGAGACCCCAGTGAGGTCTTCTACAAACAACTGTTGGGTGAACTTCTaGTGGCTTCTCAATGCCTTC +
Preference number: 4 (lower is better)
Translates to: EVYFTCLSETPVRSSTNNCWVNF*WLLNAF
Trigger: GAAGGCATTGAGAAGCCAGCAGAAGTTCACCCAACA...GTTGTTTGTAGAAGACCTCACTGGGGTCTCAGATAAGCAGGTAAAATAAACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 90 bp CTTCCCAGGCCACTCGCTGGGCTCGACGCTGGGCCTGTAGACGGCTaGCCAAGTCCCTCCGACGCCGGGGTCTGCTTCCAGTTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: LPRPLAGLDAGPVDG*PSPSDAGVCFQFSV
Trigger: AACAGAGAACTGGAAGCAGACCCCGGCGTCGGAGGGACTTGGGCAGCCGTCTACAGGCCCAGCGTCGAGCCCAGCGAGTGGCCTGGGAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 90 bp TGGGCAGGGAGGTCCTGGCCCCAGGAGATGAGGGAGTTGCTGGCCTaGGCAAGCTCTGTGATGGACACCCGGCCCCGCTGTCGGATGAAA +
Preference number: 5 (lower is better)
Translates to: WAGRSWPQEMRELLA*ASSVMDTRPRCRMK
Trigger: TTTCATCCGACAGCGGGGCCGGGTGTCCATCACAGAGCTTGCCCAGGCCAGCAACTCCCTCATCTCCTGGGGCCAGGACCTCCCTGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 90 bp GCTGGGCCTGTAGACGGCTGCCCAAGTCCCTCCGACGCCGGGGTCTaGTTCCAGTTCTCTGTTCTTCAGACTCCTGGGGCAAAGAGCGGC +
Preference number: 5 (lower is better)
Translates to: AGPVDGCPSPSDAGV*FQFSVLQTPGAKSG
Trigger: GCCGCTCTTTGCCCCAGGAGTCTGAAGAACAGAGAACTGGAAGCAGACCCCGGCGTCGGAGGGACTTGGGCAGCCGTCTACAGGCCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 90 bp TCCTGCCCTCTCTTCCTCATTGTGCAGTGGTTCTCCGTCAGCTGCTaGCGCCCGACCCCGGCTGCGAGTCAGGAAGAGGATCAGGCCGAT +
Preference number: 5 (lower is better)
Translates to: SCPLFLIVQWFSVSC*RPTPAASQEEDQAD
Trigger: ATCGGCCTGATCCTCTTCCTGACTCGCAGCCGGGGTCGGGCGGCAGCAGCTGACGGAGAACCACTGCACAATGAGGAAGAGAGGGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 90 bp CTCCGACGCCGGGGTCTGCTTCCAGTTCTCTGTTCTTCAGACTCCTaGGGCAAAGAGCGGCCTACCTGGCCTGCTCCTGCCCTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: LRRRGLLPVLCSSDS*GKERPTWPAPALSS
Trigger: GGAAGAGAGGGCAGGAGCAGGCCAGGTAGGCCGCTCTTTGCCCCAGGAGTCTGAAGAACAGAGAACTGGAAGCAGACCCCGGCGTCGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 90 bp TTCTTCAGACTCCTGGGGCAAAGAGCGGCCTACCTGGCCTGCTCCTaGCCTCTCTTCCTCATTGTGCAGTGGTTCTCCGTCAGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: FFRLLGQRAAYLACS*PLFLIVQWFSVSCC
Trigger: GCAGCAGCTGACGGAGAACCACTGCACAATGAGGAAGAGAGGGCAGGAGCAGGCCAGGTAGGCCGCTCTTTGCCCCAGGAGTCTGAAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS TCA 90 bp TTCAGTTTCAGGTACTCCTCGTGCTCCCGCCGGGCCTGCTCCTCCTaGGCCTTCCTCTCTTCCTCCTCCTTCTGTTCTTCCTTCAGGCGA +
Preference number: 5 (lower is better)
Translates to: FSFRYSSCSRRACSS*AFLSSSSFCSSFRR
Trigger: TCGCCTGAAGGAAGAACAGAAGGAGGAGGAAGAGAGGAAGGCTCAGGAGGAGCAGGCCCGGCGGGAGCACGAGGAGTACCTGAAACTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 90 bp TCTCTGTTCTTCAGACTCCTGGGGCAAAGAGCGGCCTACCTGGCCTaGTCCTGCCCTCTCTTCCTCATTGTGCAGTGGTTCTCCGTCAGC +
Preference number: 5 (lower is better)
Translates to: SLFFRLLGQRAAYLA*SCPLFLIVQWFSVS
Trigger: GCTGACGGAGAACCACTGCACAATGAGGAAGAGAGGGCAGGAGCAGGCCAGGTAGGCCGCTCTTTGCCCCAGGAGTCTGAAGAACAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 90 bp CCGGCCCCGCTGTCGGATGAAATTGGCCACGGCAGCCAGTTCCTCTaGGGTTATGTAGATAAACTTGCCCCGGTCGTCAATCACACCTGT +
Preference number: 5 (lower is better)
Translates to: PAPLSDEIGHGSQFL*GYVDKLAPVVNHTC
Trigger: ACAGGTGTGATTGACGACCGGGGCAAGTTTATCTACATAACCCCAGAGGAACTGGCTGCCGTGGCCAATTTCATCCGACAGCGGGGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 90 bp TTCAGGCGAAGCCGTTCCTCTTCCTTCTTCCATTCGGCCTCACGTTaGGACTCTAGGCGTTTCCGTTCTTCACGTTCAGCCTCCTCTGCC +
Preference number: 5 (lower is better)
Translates to: FRRSRSSSFFHSASR*DSRRFRSSRSASSA
Trigger: GGCAGAGGAGGCTGAACGTGAAGAACGGAAACGCCTAGAGTCCCAACGTGAGGCCGAATGGAAGAAGGAAGAGGAACGGCTTCGCCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089559.11
ENSMUST00000135072.2
CDS GCA 90 bp ACACTACCCTCATGGCACAGATCTCCCAGGAGTGATGGGCCCACCTaGTCCTCAGTCATGGTTTCGCTAACACCTTCTTCTTCTACCACG +
Preference number: 5 (lower is better)
Translates to: TLPSWHRSPRSDGPT*SSVMVSLTPSSSTT
Trigger: CGTGGTAGAAGAAGAAGGTGTTAGCGAAACCATGACTGAGGAGCAGGTGGGCCCATCACTCCTGGGAGATCTGTGCCATGAGGGTAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134044.8
CDS TCA 90 bp TCTAGGCGTTTCCGTTCTTCACGTTCAGCCTCCTCTGCCTCTCGCTaGGCCTTTCGAGCCTGTTTTTCCTCTAGCTTCCGTAGTTTCTTG +
Preference number: 5 (lower is better)
Translates to: SRRFRSSRSASSASR*AFRACFSSSFRSFL
Trigger: CAAGAAACTACGGAAGCTAGAGGAAAAACAGGCTCGAAAGGCTCAGCGAGAGGCAGAGGAGGCTGAACGTGAAGAACGGAAACGCCTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CAA 90 bp ATTCACAGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGCGCTGTCGGATGAAATaGGCCACGGCAGCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: IHRPLIHNFLVIFHPCPKRCRMK*ATAASS
Trigger: GGAACTGGCTGCCGTGGCCAATTTCATCCGACAGCG...CTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCTGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CAA 90 bp ACCCCAGTGAGGTCTTCTACAAACAACAAGCTCAGCAGTATTCACAGGCCTTTACAGGAGATGAGGGAGTaGCTGGCCTGGGCAAGCTCT +
Preference number: 5 (lower is better)
Translates to: TPVRSSTNNKLSSIHRPLQEMRE*LAWASS
Trigger: AGAGCTTGCCCAGGCCAGCAACTCCCTCATCTCCTG...TAAAGGCCTGTGAATACTGCTGAGCTTGTTGTTTGTAGAAGACCTCACTGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS TCA 90 bp TCCTCTAGCTTCCGTAGTTTCTTGGCTCCAATTTTCCCTGTTGGGTaGACTTCTGCTGGCTTCTCAATGCCTTCTTCCTCCTGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: SSSFRSFLAPIFPVG*TSAGFSMPSSSWAG
Trigger: TCCAGCCCAGGAGGAAGAAGGCATTGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCTAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CAA 90 bp CCCTGCCCCAAGACGGCATTAGGGAAGGATGAAGACACATGTAGGCCACAGGATAGCTTCCGTAGTTTCTaGGCTCCAATTTTCCCTGTT +
Preference number: 5 (lower is better)
Translates to: PCPKTALGKDEDTCRPQDSFRSF*APIFPV
Trigger: AACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCT...ATCCTGTGGCCTACATGTGTCTTCATCCTTCCCTAATGCCGTCTTGGGGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS-3UTR CAA 90 bp AGGCCTTTAATCCACAACTTTCTGGTCATATTCCATCCCTGCCCCAAGACGGCAGGCTGGAATAACAGTTaGACCCACATTCTCATCCCC +
Preference number: 5 (lower is better)
Translates to: RPLIHNFLVIFHPCPKTAGWNNS*THILIP
Trigger: GGGGATGAGAATGTGGGTCAAACTGTTATTCCAGCC...TGCCGTCTTGGGGCAGGGATGGAATATGACCAGAAAGTTGTGGATTAAAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 90 bp GCTGAGCCTTTCGAGCCTGTTTTTCCTCTAGCTTCCGTAGTTTCTTaGCTCCAATTTTCCCTGTTGGGTGAACTTCTGCTGGCTTCTCAA +
Preference number: 5 (lower is better)
Translates to: AEPFEPVFPLASVVS*LQFSLLGELLLASQ
Trigger: TTGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCTAGAGGAAAAACAGGCTCGAAAGGCTCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 72 bp CCACTCGCTGGGCTCGACGCTGGGCCTGTAGACGGCTaGCCAAGTCCCTCCGACGCCGGGGTCTGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: PLAGLDAGPVDG*PSPSDAGVCFQ
Trigger: CTGGAAGCAGACCCCGGCGTCGGAGGGACTTGGGCAGCCGTCTACAGGCCCAGCGTCGAGCCCAGCGAGTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp TCCCCGTCTTCCCAGGCCACTCGCTGGGCTCGACGCTaGGCCTGTAGACGGCTGCCCAAGTCCCTCCGACGC +
Preference number: 6 (lower is better)
Translates to: SPSSQATRWARR*ACRRLPKSLRR
Trigger: GCGTCGGAGGGACTTGGGCAGCCGTCTACAGGCCCAGCGTCGAGCCCAGCGAGTGGCCTGGGAAGACGGGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CAA 90 bp GCTGAAGCCTGGGCAGGGAGGTCCTGGCCCCAGGAGATGAGGGAGTaGCTGGCCTGGGCAAGCTCTGTGATGGACACCCGGCCCCGCTGT +
Preference number: 6 (lower is better)
Translates to: AEAWAGRSWPQEMRE*LAWASSVMDTRPRC
Trigger: ACAGCGGGGCCGGGTGTCCATCACAGAGCTTGCCCAGGCCAGCAACTCCCTCATCTCCTGGGGCCAGGACCTCCCTGCCCAGGCTTCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp AGGTCCTGGCCCCAGGAGATGAGGGAGTTGCTGGCCTaGGCAAGCTCTGTGATGGACACCCGGCCCCGCTGT +
Preference number: 6 (lower is better)
Translates to: RSWPQEMRELLA*ASSVMDTRPRC
Trigger: ACAGCGGGGCCGGGTGTCCATCACAGAGCTTGCCCAGGCCAGCAACTCCCTCATCTCCTGGGGCCAGGACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CAA 72 bp TGGGCAGGGAGGTCCTGGCCCCAGGAGATGAGGGAGTaGCTGGCCTGGGCAAGCTCTGTGATGGACACCCGG +
Preference number: 6 (lower is better)
Translates to: WAGRSWPQEMRE*LAWASSVMDTR
Trigger: CCGGGTGTCCATCACAGAGCTTGCCCAGGCCAGCAACTCCCTCATCTCCTGGGGCCAGGACCTCCCTGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS TCA 72 bp GACCCCGGCTGCGAGTCAGGAAGAGGATCAGGCCGATaGGCAAAACTGCCGCCACCAGATACACCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: DPGCESGRGSGR*AKLPPPDTPRA
Trigger: GGCCCTGGGTGTATCTGGTGGCGGCAGTTTTGCTCATCGGCCTGATCCTCTTCCTGACTCGCAGCCGGGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 72 bp CCTCTCTTCCTCATTGTGCAGTGGTTCTCCGTCAGCTaGTGCCGCCCGACCCCGGCTGCGAGTCAGGAAGAG +
Preference number: 6 (lower is better)
Translates to: PLFLIVQWFSVS*CRPTPAASQEE
Trigger: CTCTTCCTGACTCGCAGCCGGGGTCGGGCGGCAGCAGCTGACGGAGAACCACTGCACAATGAGGAAGAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 72 bp CTCTTCCTCATTGTGCAGTGGTTCTCCGTCAGCTGCTaGCGCCCGACCCCGGCTGCGAGTCAGGAAGAGGAT +
Preference number: 6 (lower is better)
Translates to: LFLIVQWFSVSC*RPTPAASQEED
Trigger: ATCCTCTTCCTGACTCGCAGCCGGGGTCGGGCGGCAGCAGCTGACGGAGAACCACTGCACAATGAGGAAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp CGGGGTCTGCTTCCAGTTCTCTGTTCTTCAGACTCCTaGGGCAAAGAGCGGCCTACCTGGCCTGCTCCTGCC +
Preference number: 6 (lower is better)
Translates to: RGLLPVLCSSDS*GKERPTWPAPA
Trigger: GGCAGGAGCAGGCCAGGTAGGCCGCTCTTTGCCCCAGGAGTCTGAAGAACAGAGAACTGGAAGCAGACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS GCA 72 bp TTCAGACTCCTGGGGCAAAGAGCGGCCTACCTGGCCTaGTCCTGCCCTCTCTTCCTCATTGTGCAGTGGTTC +
Preference number: 6 (lower is better)
Translates to: FRLLGQRAAYLA*SCPLFLIVQWF
Trigger: GAACCACTGCACAATGAGGAAGAGAGGGCAGGAGCAGGCCAGGTAGGCCGCTCTTTGCCCCAGGAGTCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp AGCCGTTCCTCTTCCTTCTTCCATTCGGCCTCACGTTaGGACTCTAGGCGTTTCCGTTCTTCACGTTCAGCC +
Preference number: 6 (lower is better)
Translates to: SRSSSFFHSASR*DSRRFRSSRSA
Trigger: GGCTGAACGTGAAGAACGGAAACGCCTAGAGTCCCAACGTGAGGCCGAATGGAAGAAGGAAGAGGAACGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089559.11
ENSMUST00000135072.2
CDS CAA 72 bp CTCAATGCCTTCTTCCTCCTGGGCTGGAATAACAGTTaGACCCACATTCTCATCCCCGTCTTCCCAGGCCAC +
Preference number: 6 (lower is better)
Translates to: LNAFFLLGWNNS*THILIPVFPGH
Trigger: GTGGCCTGGGAAGACGGGGATGAGAATGTGGGTCAAACTGTTATTCCAGCCCAGGAGGAAGAAGGCATTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS TCA 72 bp TCAATGCCTTCTTCCTCCTGGGCTGGAATAACAGTTTaGCCCACATTCTCATCCCCGTCTTCCCAGGCCACT +
Preference number: 6 (lower is better)
Translates to: SMPSSSWAGITV*PTFSSPSSQAT
Trigger: AGTGGCCTGGGAAGACGGGGATGAGAATGTGGGTCAAACTGTTATTCCAGCCCAGGAGGAAGAAGGCATTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp CTGTCGGATGAAATTGGCCACGGCAGCCAGTTCCTCTaGGGTTATGTAGATAAACTTGCCCCGGTCGTCAAT +
Preference number: 6 (lower is better)
Translates to: LSDEIGHGSQFL*GYVDKLAPVVN
Trigger: ATTGACGACCGGGGCAAGTTTATCTACATAACCCCAGAGGAACTGGCTGCCGTGGCCAATTTCATCCGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CAA 90 bp GTTTTTCCTCTAGCTTCCGTAGTTTCTTGGCTCCAATTTTCCCTGTaGGGTGAACTTCTGCTGGCTTCTCAATGCCTTCTTCCTCCTGGG +
Preference number: 6 (lower is better)
Translates to: VFPLASVVSWLQFSL*GELLLASQCLLPPG
Trigger: CCCAGGAGGAAGAAGGCATTGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCTAGAGGAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS TCA 72 bp TTCCGTAGTTTCTTGGCTCCAATTTTCCCTGTTGGGTaGACTTCTGCTGGCTTCTCAATGCCTTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: FRSFLAPIFPVG*TSAGFSMPSSS
Trigger: GGAGGAAGAAGGCATTGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CCA 72 bp TTCGAGCCTGTTTTTCCTCTAGCTTCCGTAGTTTCTTaGCTCCAATTTTCCCTGTTGGGTGAACTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: FEPVFPLASVVS*LQFSLLGELLL
Trigger: CAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCTAGAGGAAAAACAGGCTCGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11
CDS CAA 72 bp CTAGCTTCCGTAGTTTCTTGGCTCCAATTTTCCCTGTaGGGTGAACTTCTGCTGGCTTCTCAATGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: LASVVSWLQFSL*GELLLASQCLL
Trigger: AAGAAGGCATTGAGAAGCCAGCAGAAGTTCACCCAACAGGGAAAATTGGAGCCAAGAAACTACGGAAGCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089559.11