Pregenerated sensors for DDB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002109Ensembl transcript IDs: ENSMUST00000028696.5, ENSMUST00000111352.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGTCACAAGTGTCCCTGCTCCAACCCTAAGAATTGGGTACTTTTaGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCC | + |
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Preference number: 1 (lower is better) Translates to: LVTSVPAPTLRIGYF*PINKQLPLLTECVP Trigger: GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGACACTTGTGACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111352.8 |
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| 3UTR CCA 72 bp | AGTGTCCCTGCTCCAACCCTAAGAATTGGGTACTTTTaGCCTATTAACAAACAGCTGCCACTCCTCACAGAA | + |
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Preference number: 3 (lower is better) Translates to: SVPAPTLRIGYF*PINKQLPLLTE Trigger: TTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAATTCTTAGGGTTGGAGCAGGGACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCGCACACGCAGCTTCTTaGCTTCGGGCTCCAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GYFWPINKQLPLLTECVPAHAAS*LRAPAP Trigger: AGGAGCTGGAGCCCGAAGCCAAGAAGCTGCGTGTGC...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR TCA 90 bp | TGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGATCGGCCCACAACAATaGGGTTGTGCCGTGAATGCC | + |
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Preference number: 4 (lower is better) Translates to: WPINKQLPLLTECVPICGIGPQQ*GCAVNA Trigger: GGCATTCACGGCACAACCTCATTGTTGTGGGCCGAT...CCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGACGTCGGGGGACTTCTaGGTTTCTGGGCATTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLLTNSCHSSQNVFPSVGTSGDF*VSGHFL Trigger: CAAGAAATGCCCAGAAACCCAGAAGTCCCCCGACGT...CCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR TCA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAATGCTGCTACTCCGTaGAGGGATCTGCAGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: GYFWPINKQLPLLTECVPNAATP*RDLQAG Trigger: TCCAGCCTGCAGATCCCTTCACGGAGTAGCAGCATT...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR GCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTCAGGCTGGACAACTCTaGCAGAAGGCAGCACGACTC | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSQAGQL*QKAARL Trigger: GAGTCGTGCTGCCTTCTGGCAGAGTTGTCCAGCCTG...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR GCA 90 bp | CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCGCTCCTTGCCATCTGTaGTCAACAGGATCACATGTC | + |
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Preference number: 4 (lower is better) Translates to: PINKQLPLLTECVPICGVAPCHL*STGSHV Trigger: GACATGTGATCCTGTTGAGCACAGATGGCAAGGAGC...GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAAAGGGATCTGCAGGCTaGACAACTCTGCCAGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPKGSAG*TTLPEG Trigger: GCCTTCTGGCAGAGTTGTCCAGCCTGCAGATCCCTT...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR TCA 90 bp | TTGGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCATCGGCCCACAACAATaGGGTTGTGCCGTGAATGCC | + |
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Preference number: 4 (lower is better) Translates to: LGTFGLLTNSCHSSQNVFIGPQQ*GCAVNA Trigger: GGCATTCACGGCACAACCTCATTGTTGTGGGCCGAT...GAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAGACTTCTGCAGACCCTaGTGTAGTGATGACCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPDFCRP*CSDDQV Trigger: CACCTGGTCATCACTACAGCAGGGTCTGCAGAAGTC...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR TCA 90 bp | TGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGACCTTGCAAGAGTTTaGGCTGGTATAAACTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: WPINKQLPLLTECVPICGDLARV*AGINSE Trigger: CTCAGAGTTTATACCAGCTCAAACTCTTGCAAGGTC...CCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | GGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTGCAAAACCAGACCTTaGAAGAGTTTGAGCTGGTAT | + |
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Preference number: 4 (lower is better) Translates to: GLLTNSCHSSQNVFPSVGCKTRP*KSLSWY Trigger: ATACCAGCTCAAACTCTTGCAAGGTCTGGTTTTGCA...CCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | TACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCACAACAATGAGGTTGTaGCGTGAATGCCAGGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: YFWPINKQLPLLTECVPITTMRL*RECQVA Trigger: GGCGACCTGGCATTCACGGCACAACCTCATTGTTGT...GATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | TTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTACAACAATGAGGTTGTaGCGTGAATGCCAGGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: FWPINKQLPLLTECVPICTTMRL*RECQVA Trigger: GGCGACCTGGCATTCACGGCACAACCTCATTGTTGT...ACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCTTTCCCTTTAATTTaGCGCAGGTCCCAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: GLLTNSCHSSQNVFPSVGSFPLI*RRSQIF Trigger: GAAGATTTGGGACCTGCGCCAAATTAAAGGGAAAGA...CCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATTGCCTTTAAAATCCTaGAGCCTGGTTGTTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPLPLKS*SLVVPS Trigger: GGAGGGAACAACCAGGCTGCAGGATTTTAAAGGCAA...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | TTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGTTGCCTTTAAAATCCTaGAGCCTGGTTGTTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: FGLLTNSCHSSQNVFPSVLPLKS*SLVVPS Trigger: GGAGGGAACAACCAGGCTGCAGGATTTTAAAGGCAA...CACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCCAGAAACATCAAGGCTaGAAAACCAGACCTTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: GYFWPINKQLPLLTECVPQKHQG*KTRPCK Trigger: CTTGCAAGGTCTGGTTTTGCAGCCTTGATGTTTCTG...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGCTCCTTGCCATCTGTaGTCAACAGGATCACATGTC | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSAPCHL*STGSHV Trigger: GACATGTGATCCTGTTGAGCACAGATGGCAAGGAGC...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR TCA 90 bp | TTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGACCTTGCAAGAGTTTaGGCTGGTATAAACTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FGLLTNSCHSSQNVFPSVDLARV*AGINSE Trigger: CTCAGAGTTTATACCAGCTCAAACTCTTGCAAGGTC...CACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | TTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGATGACCAGGTGGCTTTaGCCAACTTATGCTGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: FGLLTNSCHSSQNVFPSVMTRWL*PTYAGK Trigger: TTTACCAGCATAAGTTGGGCAAAGCCACCTGGTCAT...CACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR TCA 90 bp | TTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTTTCATGATCTTTCTGTaGCCCATCTTCCTCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: FWPINKQLPLLTECVPICFMIFL*PIFLLA Trigger: AGCCAAGAGGAAGATGGGTCACAGAAAGATCATGAA...ACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR TCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTTTCATGATCTTTCTGTaGCCCATCTTCCTCTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSFMIFL*PIFLLA Trigger: AGCCAAGAGGAAGATGGGTCACAGAAAGATCATGAA...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTCAGAAACATCAAGGCTaGAAAACCAGACCTTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSQKHQG*KTRPCK Trigger: CTTGCAAGGTCTGGTTTTGCAGCCTTGATGTTTCTG...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR GCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTTGCAAAACCAGACCTTaGAAGAGTTTGAGCTGGTAT | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSCKTRP*KSLSWY Trigger: ATACCAGCTCAAACTCTTGCAAGGTCTGGTTTTGCA...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | TTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTTGGTTGGTATTGAGATaGTTAAACTTCAGCCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: FWPINKQLPLLTECVPICWLVLR*LNFSPV Trigger: CACTGGGCTGAAGTTTAACCATCTCAATACCAACCA...ACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGGACCCTGAGCGTAGCTGGTTTACTCTTTAATTTTCTGGAGCAAAATCTAGAGTGGTTGGTATTGAGATaGTTAAACTTCAGCCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: GTLSVAGLLFNFLEQNLEWLVLR*LNFSPV Trigger: CACTGGGCTGAAGTTTAACCATCTCAATACCAACCA...CTCTAGATTTTGCTCCAGAAAATTAAAGAGTAAACCAGCTACGCTCAGGGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | ACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTTCTTTCCCTTTAATTTaGCGCAGGTCCCAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: TFGLLTNSCHSSQNVFPSSFPLI*RRSQIF Trigger: GAAGATTTGGGACCTGCGCCAAATTAAAGGGAAAGA...AGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATTTAAGATTAGGATCTaGGTATCGGCCCACAACAAT | + |
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Preference number: 4 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPFKIRI*VSAHNN Trigger: ATTGTTGTGGGCCGATACCCAGATCCTAATCTTAAA...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CCA 90 bp | TACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTTTAAGATTAGGATCTaGGTATCGGCCCACAACAAT | + |
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Preference number: 4 (lower is better) Translates to: YFWPINKQLPLLTECVPIFKIRI*VSAHNN Trigger: ATTGTTGTGGGCCGATACCCAGATCCTAATCTTAAA...GATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS TCA 90 bp | ACGGGACCCTGCACACGCAGCTTCTTGGCTTCGGGCTCCAGCTCCTaGGGACCTCTGCGACTTTTGCTCCTGAGGAGCACCGCAACGTCG | + |
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Preference number: 5 (lower is better) Translates to: TGPCTRSFLASGSSS*GPLRLLLLRSTATS Trigger: CGACGTTGCGGTGCTCCTCAGGAGCAAAAGTCGCAGAGGTCCTCAGGAGCTGGAGCCCGAAGCCAAGAAGCTGCGTGTGCAGGGTCCCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 90 bp | TGGCTTCGGGCTCCAGCTCCTGAGGACCTCTGCGACTTTTGCTCCTaGGGAGCACCGCAACGTCGGGGGACTTCTGGGTTTCTGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: WLRAPAPEDLCDFCS*GAPQRRGTSGFLGI Trigger: AATGCCCAGAAACCCAGAAGTCCCCCGACGTTGCGGTGCTCCTCAGGAGCAAAAGTCGCAGAGGTCCTCAGGAGCTGGAGCCCGAAGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS GCA 90 bp | CCCTTTGGAGCCCACAGCCAGGGTACTGGGATGAGTCGGGTGCCATaGCAAGGACGTAGTCCTCCTGTCAAAGGGGGCAGCTTTTCGGAA | + |
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Preference number: 5 (lower is better) Translates to: PFGAHSQGTGMSRVP*QGRSPPVKGGSFSE Trigger: TTCCGAAAAGCTGCCCCCTTTGACAGGAGGACTACGTCCTTGGCATGGCACCCGACTCATCCCAGTACCCTGGCTGTGGGCTCCAAAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 90 bp | ATCATAATATCTCCCCCTTTGGAGCCCACAGCCAGGGTACTGGGATaGGTCGGGTGCCATGCCAAGGACGTAGTCCTCCTGTCAAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: IIISPPLEPTARVLG*VGCHAKDVVLLSKG Trigger: CCCCTTTGACAGGAGGACTACGTCCTTGGCATGGCACCCGACTCATCCCAGTACCCTGGCTGTGGGCTCCAAAGGGGGAGATATTATGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR CAA 90 bp | CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCTGCACACGCAGCTTCTaGGCTTCGGGCTCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: PINKQLPLLTECVPICGVCTRSF*ASGSSS Trigger: GGAGCTGGAGCCCGAAGCCAAGAAGCTGCGTGTGCA...GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR CAA 90 bp | CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCAATCCTGCAGCCTGGTaGTTCCCTCCATTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: PINKQLPLLTECVPICGVNPAAW*FPPLRR Trigger: CCTCCTCAATGGAGGGAACAACCAGGCTGCAGGATT...GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | AGTCCCACAGTATCCCTTGTCACAAGTGTCCCTGCTCCAACCCTAAGAATTGGGAGGTTCCAAAGCTCCTaGCCATCTGTGCTCAACAGG | + |
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Preference number: 5 (lower is better) Translates to: SPTVSLVTSVPAPTLRIGRFQSS*PSVLNR Trigger: CCTGTTGAGCACAGATGGCAAGGAGCTTTGGAACCT...CCCAATTCTTAGGGTTGGAGCAGGGACACTTGTGACAAGGGATACTGTGGGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | CCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCCCCACAACAATGAGGTaGTGCCGTGAATGCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: PINKQLPLLTECVPICGVPTTMR*CRECQV Trigger: GACCTGGCATTCACGGCACAACCTCATTGTTGTGGG...GACCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | TGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGACCACCACTCTGCTCTaGGCAGAAACATCAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: WPINKQLPLLTECVPICGTTTLL*AETSRL Trigger: CAGCCTTGATGTTTCTGCCAAGAGCAGAGTGGTGGT...CCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCACCACCACTCTGCTCTaGGCAGAAACATCAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: GYFWPINKQLPLLTECVPTTTLL*AETSRL Trigger: CAGCCTTGATGTTTCTGCCAAGAGCAGAGTGGTGGT...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAGGTTCCAAAGCTCCTaGCCATCTGTGCTCAACAGG | + |
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Preference number: 5 (lower is better) Translates to: GYFWPINKQLPLLTECVPRFQSS*PSVLNR Trigger: CCTGTTGAGCACAGATGGCAAGGAGCTTTGGAACCT...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCACCCACAACAATGAGGTaGTGCCGTGAATGCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPPTTMR*CRECQV Trigger: GACCTGGCATTCACGGCACAACCTCATTGTTGTGGG...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAATAATATCTCCCCCTTaGGAGCCCACAGCCAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPIISPP*EPTARV Trigger: TACCCTGGCTGTGGGCTCCAAAGGGGGAGATATTAT...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS-3UTR CAA 90 bp | TTGGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCAATCCTGCAGCCTGGTaGTTCCCTCCATTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LGTFGLLTNSCHSSQNVFNPAAW*FPPLRR Trigger: CCTCCTCAATGGAGGGAACAACCAGGCTGCAGGATT...GAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGAAGATAGGTTTGTCCTaGATGCCAAAGTTCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: GLLTNSCHSSQNVFPSVGKIGLS*MPKFQI Trigger: GATCTGGAACTTTGGCATCAAGGACAAACCTATCTT...CCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | TGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGTCTTTCCCTTTAATTaGGCGCAGGTCCCAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: WPINKQLPLLTECVPICGVFPFN*AQVPNL Trigger: AAGATTTGGGACCTGCGCCAAATTAAAGGGAAAGAC...CCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCACTGCAAAACCAGACCTaGCAAGAGTTTGAGCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPLQNQT*QEFELV Trigger: TACCAGCTCAAACTCTTGCAAGGTCTGGTTTTGCAG...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGGGGAAAAACTGGTTGGTATaGAGATGGTTAAACTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: GLLTNSCHSSQNVFPSVGKNWLV*RWLNFS Trigger: GCTGAAGTTTAACCATCTCAATACCAACCAGTTTTT...CCCCACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | TACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCCTGCAAAACCAGACCTaGCAAGAGTTTGAGCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: YFWPINKQLPLLTECVPILQNQT*QEFELV Trigger: TACCAGCTCAAACTCTTGCAAGGTCTGGTTTTGCAG...GATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCAAAGATAGGTTTGTCCTaGATGCCAAAGTTCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: GTFGLLTNSCHSSQNVFPKIGLS*MPKFQI Trigger: GATCTGGAACTTTGGCATCAAGGACAAACCTATCTT...TGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | GGGTACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCTTAAGGAAGATAGGTTaGTCCTTGATGCCAAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: GYFWPINKQLPLLTECVPLRKIG*SLMPKF Trigger: GAACTTTGGCATCAAGGACAAACCTATCTTCCTTAA...GGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | TACTTTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCGTCTTTCCCTTTAATTaGGCGCAGGTCCCAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: YFWPINKQLPLLTECVPIVFPFN*AQVPNL Trigger: AAGATTTGGGACCTGCGCCAAATTAAAGGGAAAGAC...GATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS-3UTR CAA 90 bp | TTTGGCCTATTAACAAACAGCTGCCACTCCTCACAGAATGTGTTCCCATCTGTGAAAAACTGGTTGGTATaGAGATGGTTAAACTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: FGLLTNSCHSSQNVFPSVKNWLV*RWLNFS Trigger: GCTGAAGTTTAACCATCTCAATACCAACCAGTTTTT...CACAGATGGGAACACATTCTGTGAGGAGTGGCAGCTGTTTGTTAATAGGCCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS GCA 72 bp | GCCCACAGCCAGGGTACTGGGATGAGTCGGGTGCCATaGCAAGGACGTAGTCCTCCTGTCAAAGGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AHSQGTGMSRVP*QGRSPPVKGGS Trigger: GCTGCCCCCTTTGACAGGAGGACTACGTCCTTGGCATGGCACCCGACTCATCCCAGTACCCTGGCTGTGGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 72 bp | TCTCCCCCTTTGGAGCCCACAGCCAGGGTACTGGGATaGGTCGGGTGCCATGCCAAGGACGTAGTCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SPPLEPTARVLG*VGCHAKDVVLL Trigger: CAGGAGGACTACGTCCTTGGCATGGCACCCGACTCATCCCAGTACCCTGGCTGTGGGCTCCAAAGGGGGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 72 bp | GCTCCAGCTCCTGAGGACCTCTGCGACTTTTGCTCCTaGGGAGCACCGCAACGTCGGGGGACTTCTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: APAPEDLCDFCS*GAPQRRGTSGF Trigger: AAACCCAGAAGTCCCCCGACGTTGCGGTGCTCCTCAGGAGCAAAAGTCGCAGAGGTCCTCAGGAGCTGGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 72 bp | TGCACACGCAGCTTCTTGGCTTCGGGCTCCAGCTCCTaGGGACCTCTGCGACTTTTGCTCCTGAGGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: CTRSFLASGSSS*GPLRLLLLRST Trigger: GGTGCTCCTCAGGAGCAAAAGTCGCAGAGGTCCTCAGGAGCTGGAGCCCGAAGCCAAGAAGCTGCGTGTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS GCA 72 bp | CAGCACGACTCACATGTCCTGCTAGAAACGGGACCCTaGACACGCAGCTTCTTGGCTTCGGGCTCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: QHDSHVLLETGP*TRSFLASGSSS Trigger: GGAGCTGGAGCCCGAAGCCAAGAAGCTGCGTGTGCAGGGTCCCGTTTCTAGCAGGACATGTGAGTCGTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS TCA 72 bp | ATCTGGGTATCGGCCCACAACAATGAGGTTGTGCCGTaGATGCCAGGTCGCCTTGATGGGTGTGAGGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: IWVSAHNNEVVP*MPGRLDGCEVL Trigger: CAGCACCTCACACCCATCAAGGCGACCTGGCATTCACGGCACAACCTCATTGTTGTGGGCCGATACCCAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS GCA 72 bp | TTAGGATCTGGGTATCGGCCCACAACAATGAGGTTGTaGCGTGAATGCCAGGTCGCCTTGATGGGTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGSGYRPTTMRL*RECQVALMGVR Trigger: CCTCACACCCATCAAGGCGACCTGGCATTCACGGCACAACCTCATTGTTGTGGGCCGATACCCAGATCCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 72 bp | AGATTAGGATCTGGGTATCGGCCCACAACAATGAGGTaGTGCCGTGAATGCCAGGTCGCCTTGATGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RLGSGYRPTTMR*CRECQVALMGV Trigger: CACACCCATCAAGGCGACCTGGCATTCACGGCACAACCTCATTGTTGTGGGCCGATACCCAGATCCTAATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CCA 72 bp | ATTGTTCTGGTCAGTAGTCAGGAGCCGAGCTCCATCTaGGCTAAAACAAGCTGCATTGACAGGATGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: IVLVSSQEPSSI*AKTSCIDRMPV Trigger: CACAGGCATCCTGTCAATGCAGCTTGTTTTAGCCCAGATGGAGCTCGGCTCCTGACTACTGACCAGAACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS GCA 72 bp | GAAGCTAGAGAGTGCAAAAAGGACTTCTGCAGACCCTaGTGTAGTGATGACCAGGTGGCTTTGCCCAACTTA | + |
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Preference number: 6 (lower is better) Translates to: EARECKKDFCRP*CSDDQVALPNL Trigger: TAAGTTGGGCAAAGCCACCTGGTCATCACTACAGCAGGGTCTGCAGAAGTCCTTTTTGCACTCTCTAGCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS GCA 72 bp | TGTGCATTCGGAGGTTCCAAAGCTCCTTGCCATCTGTaGTCAACAGGATCACATGTCCCATATTGTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: CAFGGSKAPCHL*STGSHVPYCLL Trigger: CAGGAGACAATATGGGACATGTGATCCTGTTGAGCACAGATGGCAAGGAGCTTTGGAACCTCCGAATGCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 90 bp | CAAAGCTCCTTGCCATCTGTGCTCAACAGGATCACATGTCCCATATaGTCTCCTGTAACCACCACTCTGCTCTTGGCAGAAACATCAAGG | + |
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Preference number: 6 (lower is better) Translates to: QSSLPSVLNRITCPI*SPVTTTLLLAETSR Trigger: CCTTGATGTTTCTGCCAAGAGCAGAGTGGTGGTTACAGGAGACAATATGGGACATGTGATCCTGTTGAGCACAGATGGCAAGGAGCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 72 bp | TGTCCCATATTGTCTCCTGTAACCACCACTCTGCTCTaGGCAGAAACATCAAGGCTGCAAAACCAGACCTTG | + |
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Preference number: 6 (lower is better) Translates to: CPILSPVTTTLL*AETSRLQNQTL Trigger: CAAGGTCTGGTTTTGCAGCCTTGATGTTTCTGCCAAGAGCAGAGTGGTGGTTACAGGAGACAATATGGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 72 bp | TTGCCATCTGTGCTCAACAGGATCACATGTCCCATATaGTCTCCTGTAACCACCACTCTGCTCTTGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LPSVLNRITCPI*SPVTTTLLLAE Trigger: TTCTGCCAAGAGCAGAGTGGTGGTTACAGGAGACAATATGGGACATGTGATCCTGTTGAGCACAGATGGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 90 bp | ATGCTTCCTCCAGCTCCAATCCCTTTAAGGAAGATAGGTTTGTCCTaGATGCCAAAGTTCCAGATCATAATATCTCCCCCTTTGGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: MLPPAPIPLRKIGLS*MPKFQIIISPPLEP Trigger: GGGCTCCAAAGGGGGAGATATTATGATCTGGAACTTTGGCATCAAGGACAAACCTATCTTCCTTAAAGGGATTGGAGCTGGAGGAAGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS CAA 90 bp | AGGATCACATGTCCCATATTGTCTCCTGTAACCACCACTCTGCTCTaGGCAGAAACATCAAGGCTGCAAAACCAGACCTTGCAAGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: RITCPILSPVTTTLL*AETSRLQNQTLQEF Trigger: AAACTCTTGCAAGGTCTGGTTTTGCAGCCTTGATGTTTCTGCCAAGAGCAGAGTGGTGGTTACAGGAGACAATATGGGACATGTGATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028696.5 ENSMUST00000111352.8 |
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| CDS CAA 72 bp | CCAGCTCCAATCCCTTTAAGGAAGATAGGTTTGTCCTaGATGCCAAAGTTCCAGATCATAATATCTCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: PAPIPLRKIGLS*MPKFQIIISPP Trigger: AGGGGGAGATATTATGATCTGGAACTTTGGCATCAAGGACAAACCTATCTTCCTTAAAGGGATTGGAGCTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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| CDS CAA 72 bp | CTTCCTCCAGCTCCAATCCCTTTAAGGAAGATAGGTTaGTCCTTGATGCCAAAGTTCCAGATCATAATATCT | + |
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Preference number: 6 (lower is better) Translates to: LPPAPIPLRKIG*SLMPKFQIIIS Trigger: AGATATTATGATCTGGAACTTTGGCATCAAGGACAAACCTATCTTCCTTAAAGGGATTGGAGCTGGAGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028696.5 |
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