RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DCUN1D2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038506

Ensembl transcript IDs: ENSMUST00000045366.10, ENSMUST00000110838.8, ENSMUST00000110839.10, ENSMUST00000110840.8, ENSMUST00000203467.3, ENSMUST00000203604.2

Found 295 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTaGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCAC +
Preference number: 1 (lower is better)
Translates to: EVRGQLEKSLLPSTT*LAGTELRLGSTCLH
Trigger: GTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR GCA 90 bp GTGAGATTCCCGTTCATTAGCAATGTCCACCTCGTAGGGCACGCATaGCTCAGAGCTGCTTCCTACCCCAGGAGCAGGCCCCAGTACCAG +
Preference number: 1 (lower is better)
Translates to: VRFPFISNVHLVGHA*LRAASYPRSRPQYQ
Trigger: CTGGTACTGGGGCCTGCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATTGCTAATGAACGGGAATCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 90 bp CCAGTCTTGCCCATGAGTGCATGCTGGCTGGGGTCACAAATGGAGTaGGACAAGTGTTCCCCACCAGGCCACAGGATGTGCTGTGGGAAG +
Preference number: 1 (lower is better)
Translates to: PVLPMSACWLGSQME*DKCSPPGHRMCCGK
Trigger: CTTCCCACAGCACATCCTGTGGCCTGGTGGGGAACACTTGTCTCACTCCATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 90 bp ACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTaGACTCAGGCTGGGCAGCACATGCCTTCACCTGCTCAATCATAT +
Preference number: 1 (lower is better)
Translates to: TGEVTSPLHHVARRD*TQAGQHMPSPAQSY
Trigger: ATATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 90 bp GTGCTGTGGCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTaGTGCCTGATGCTTCTGTGCTCACACTCTAACCTGATGGCTGTG +
Preference number: 1 (lower is better)
Translates to: VLWLSVSSGPVQPPA*CLMLLCSHSNLMAV
Trigger: CACAGCCATCAGGTTAGAGTGTGAGCACAGAAGCATCAGGCATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGCCACAGCAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 90 bp AGGCAAACAGTGGCATTCTGCTGTGTCCATGATGTGGCGGGTGGGTaGCTCCTTCTGATTTCTAGACCTGTGGCCGCGGAGCTCTCTGGA +
Preference number: 1 (lower is better)
Translates to: RQTVAFCCVHDVAGG*LLLISRPVAAELSG
Trigger: TCCAGAGAGCTCCGCGGCCACAGGTCTAGAAATCAGAAGGAGTCACCCACCCGCCACATCATGGACACAGCAGAATGCCACTGTTTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CCA 90 bp CGATCTGACTGCCCTGCTCTGTCCTCTGTCCTCTTAGGCAAACAGTaGCATTCTGCTGTGTCCATGATGTGGCGGGTGGGTGACTCCTTC +
Preference number: 1 (lower is better)
Translates to: RSDCPALSSVLLGKQ*HSAVSMMWRVGDSF
Trigger: GAAGGAGTCACCCACCCGCCACATCATGGACACAGCAGAATGCCACTGTTTGCCTAAGAGGACAGAGGACAGAGCAGGGCAGTCAGATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 90 bp TGGCATTCTGCTGTGTCCATGATGTGGCGGGTGGGTGACTCCTTCTaGTTTCTAGACCTGTGGCCGCGGAGCTCTCTGGAGAACATCTCT +
Preference number: 1 (lower is better)
Translates to: WHSAVSMMWRVGDSF*FLDLWPRSSLENIS
Trigger: AGAGATGTTCTCCAGAGAGCTCCGCGGCCACAGGTCTAGAAATCAGAAGGAGTCACCCACCCGCCACATCATGGACACAGCAGAATGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 90 bp TCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATaGCTTCACCTGCTCAATCATATCACTGCTCCTTTCCCTGAAGAA +
Preference number: 1 (lower is better)
Translates to: STTWLAGTELRLGST*LHLLNHITAPFPEE
Trigger: TTCTTCAGGGAAAGGAGCAGTGATATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 90 bp GTGGGAAGCATGGCCTTCTTTCACTGTCGAGACGGTGTGAAGGTCTaGGTAGCCCTGCTGTCACCAGGGCTGTTGTTTGTGGACCCAAAA +
Preference number: 1 (lower is better)
Translates to: VGSMAFFHCRDGVKV*VALLSPGLLFVDPK
Trigger: TTTTGGGTCCACAAACAACAGCCCTGGTGACAGCAGGGCTACCCAGACCTTCACACCGTCTCGACAGTGAAAGAAGGCCATGCTTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 90 bp GCTAAACTGGCTGTCCCTACAAGACAGGGTCTAGCACAGCCAGTGTaGCTGCCTCAAGGCACCACACAAAAGCCTCCTGTCCTTCTGTAT +
Preference number: 1 (lower is better)
Translates to: AKLAVPTRQGLAQPV*LPQGTTQKPPVLLY
Trigger: ATACAGAAGGACAGGAGGCTTTTGTGTGGTGCCTTGAGGCAGGCACACTGGCTGTGCTAGACCCTGTCTTGTAGGGACAGCCAGTTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 90 bp AGAGAGGGGAGTGAAATGCCCAAAGCTACCAGTCTTGCCCATGAGTaGATGCTGGCTGGGGTCACAAATGGAGTGAGACAAGTGTTCCCC +
Preference number: 1 (lower is better)
Translates to: REGSEMPKATSLAHE*MLAGVTNGVRQVFP
Trigger: GGGGAACACTTGTCTCACTCCATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGGTAGCTTTGGGCATTTCACTCCCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 90 bp CCCCTGCCAACATTCAGTTTGAGAAGTACCCAGCTGACATCGATCTaGCTGCCCTGCTCTGTCCTCTGTCCTCTTAGGCAAACAGTGGCA +
Preference number: 1 (lower is better)
Translates to: PLPTFSLRSTQLTSI*LPCSVLCPLRQTVA
Trigger: TGCCACTGTTTGCCTAAGAGGACAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTGAATGTTGGCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 90 bp TTAAGCAGAGTAAGGGTTTGCTTCATGAGTGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCACACAGCAACCCACGCAGCTGTCTCC +
Preference number: 1 (lower is better)
Translates to: LSRVRVCFMSGRGRL*GQRQMHTATHAAVS
Trigger: GGAGACAGCTGCGTGGGTTGCTGTGTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 90 bp GTCTTCAGAGGAGACAGCAGGATAAGAGCTGCTGAGATTTACAGCTaGTGGACAAACTCTGGTGCAGCTCCCATCCACACCTCTGTGCTG +
Preference number: 1 (lower is better)
Translates to: VFRGDSRIRAAEIYS*WTNSGAAPIHTSVL
Trigger: CAGCACAGAGGTGTGGATGGGAGCTGCACCAGAGTTTGTCCATCAGCTGTAAATCTCAGCAGCTCTTATCCTGCTGTCTCCTCTGAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 90 bp AGGGCACCACTAGACAAGATCCAGTCCACCCTAGAGTCCGGAACGTaGTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGAAGT +
Preference number: 1 (lower is better)
Translates to: RAPLDKIQSTLESGT*YKCGSGMKNTGFGS
Trigger: ACTTCCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCCGGACTCTAGGGTGGACTGGATCTTGTCTAGTGGTGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 90 bp GGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCTaGTCAATCATATCACTGCTCCTTTCCCTGAAGAATGTTAAATCT +
Preference number: 1 (lower is better)
Translates to: GSQGLNSGWAAHAFT*SIISLLLSLKNVKS
Trigger: AGATTTAACATTCTTCAGGGAAAGGAGCAGTGATATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 90 bp CTTAGCGAAGGTGAAGGTAAACTGGTAAAGGTCCTTGAACTTGGCTaGGTCCTTAAGCTCTTGCTCCAGTCTGGGGAGAAGAGCTTTCAG +
Preference number: 1 (lower is better)
Translates to: LSEGEGKLVKVLELG*VLKLLLQSGEKSFQ
Trigger: CTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCCAGCCAAGTTCAAGGACCTTTACCAGTTTACCTTCACCTTCGCTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR TCA 90 bp ATACCAAGATTAAAAGCAGTGGGCTCTCGGGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCTTGGACTTGTGTAAAAGATACGTCA +
Preference number: 1 (lower is better)
Translates to: IPRLKAVGSRARPPS*GVCLTAWTCVKDTS
Trigger: TGACGTATCTTTTACACAAGTCCAAGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGCCCGAGAGCCCACTGCTTTTAATCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 90 bp AAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTaGTTACGTACGCTCTCAAAGATGTCCCGGTTGTCCCTTGACAGA +
Preference number: 1 (lower is better)
Translates to: KAWKEVVFQVFTKSV*LRTLSKMSRLSLDR
Trigger: TCTGTCAAGGGACAACCGGGACATCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCGTGGCTCGCAGGGACTaGACTCAGGCTGGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: QLEKSLLPSTTWLAGTELVARRD*TQAGQH
Trigger: GTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCAC...GAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCCGTAACGTCAGGAGCTaGACAGCAAGCTCTCAGCCC +
Preference number: 2 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTRNVRS*TASSQP
Trigger: GGGCTGAGAGCTTGCTGTCCAGCTCCTGACGTTACG...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCT +
Preference number: 2 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTARPPS*GVCLTA
Trigger: AGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGC...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGTGGCTCGCAGGGACTaGACTCAGGCTGGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSVARRD*TQAGQH
Trigger: GTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCAC...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp AATGTCCACCTCGTAGGGCACGCATGCCTCAGAGCTGCTTCCTACCCCAGGAGCCGCATGCCTCAGAGCTaGTTCCTACCCCAGGAGCAG +
Preference number: 2 (lower is better)
Translates to: NVHLVGHACLRAASYPRSRMPQS*FLPQEQ
Trigger: CTGCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCG...GCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCACCAGGCGCAGACAGGTaGGACAGGGCTTTGGGTGTG +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSPGADR*DRALGV
Trigger: CACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGG...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp ATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGTGGCTCGCAGGGACTaGACTCAGGCTGGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: MCGGQRTTGEVTSPLHHVVARRD*TQAGQH
Trigger: GTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCAC...CACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AGCTCCCATCCACACCTCTGTGCTGTGGCTCTCTGTAAGCAGCGGACCTGTGCACACCCTGGCTGGCCTTaGACTCCCAGAGACTTGCCT +
Preference number: 2 (lower is better)
Translates to: SSHPHLCAVALCKQRTCAHPGWP*TPRDLP
Trigger: AGGCAAGTCTCTGGGAGTTCAAGGCCAGCCAGGGTG...TGCACAGGTCCGCTGCTTACAGAGAGCCACAGCACAGAGGTGTGGATGGGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR GCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAAC +
Preference number: 2 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFAGPIL*QPPCAN
Trigger: GTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGC...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAAC +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLAGPIL*QPPCAN
Trigger: GTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGC...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp ATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGCCAGGCGCAGACAGGTaGGACAGGGCTTTGGGTGTG +
Preference number: 2 (lower is better)
Translates to: MCGGQRTTGEVTSPLHHVPGADR*DRALGV
Trigger: CACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGG...CACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGCCAGGCGCAGACAGGTaGGACAGGGCTTTGGGTGTG +
Preference number: 2 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVPGADR*DRALGV
Trigger: CACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGG...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTGATGCCTGATGCTTCTGAGACTTGCCTGCCTTaGCCTCCTGGGTGCTGGGAT +
Preference number: 2 (lower is better)
Translates to: ALCKQRTCAASCLMPDASETCLP*PPGCWD
Trigger: ATCCCAGCACCCAGGAGGGCAAGGCAGGCAAGTCTC...AGAAGCATCAGGCATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CCA 90 bp GTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGAGGTGAGACAGGGCTTTaGGTGTGGATTCCTTCTGGA +
Preference number: 2 (lower is better)
Translates to: VTRHRPRRRQVRQGFGCGGETGL*VWIPSG
Trigger: TCCAGAAGGAATCCACACCCAAAGCCCTGTCTCACC...TCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTaGGCAGCACATGCCTTCACC +
Preference number: 2 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQGLNSG*AAHAFT
Trigger: GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCC...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCGCTTCTGTGTGTCTGCACCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAA +
Preference number: 2 (lower is better)
Translates to: STRSAHVPDVPRRFCVSAPACDH*PCVFYK
Trigger: TTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGG...TGCAGACACACAGAAGCGCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCCCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAA +
Preference number: 2 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFPACDH*PCVFYK
Trigger: TTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGG...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAAGCTTGACACCAGATaGGCAGGTAGGATCCAGGCC +
Preference number: 2 (lower is better)
Translates to: QLEKSLLPSTTWLAGTELKLDTR*AGRIQA
Trigger: GGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTT...GAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGAAGTCTTGGCAAGTGTaGGGTAGGGTCAGCACAGTG +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLKSWQV*GRVSTV
Trigger: CACTGTGCTGACCCTACCTCACACTTGCCAAGACTT...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGTGCCAGCCACCCTGTaGAAACTGCAACAGTCTCTT +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLVPATL*KLQQSL
Trigger: AAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCAC...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGAGGCTGGGCAGCACATaGCTTCACCTGCTCAATCAT +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLRLGST*LHLLNH
Trigger: ATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCT...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGAAATCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 2 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWKSKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGATTT...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCACGTAACGTCAGGAGCTaGACAGCAAGCTCTCAGCCC +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSRNVRS*TASSQP
Trigger: GGGCTGAGAGCTTGCTGTCCAGCTCCTGACGTTACG...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCT +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSARPPS*GVCLTA
Trigger: AGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGC...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGCGTAACGTCAGGAGCTaGACAGCAAGCTCTCAGCCC +
Preference number: 2 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVRNVRS*TASSQP
Trigger: GGGCTGAGAGCTTGCTGTCCAGCTCCTGACGTTACG...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGAGGTCAGAGGACAACTaGAGAAGTCACTTCTCCCCT +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLRSEDN*RSHFSP
Trigger: AGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGTTCATGGCACATGTGTaGAGGTCAGAGGACAACTGG +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLFMAHV*RSEDNW
Trigger: CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAA...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGTGCATGAGTGCACGCTaGCCAGAAAAACACTGGAAA +
Preference number: 2 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLCMSAR*PEKHWK
Trigger: TTTCCAGTGTTTTTCTGGTCAGCGTGCACTCATGCA...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp ACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCCTAGCAGAGTAAGGGTTTaGTTCATGAGTGGACGAGGA +
Preference number: 2 (lower is better)
Translates to: TAQTQAQTGETGLWVWIPSRVRV*FMSGRG
Trigger: TCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCT...AGGAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCAGCAGAGTAAGGGTTTaGTTCATGAGTGGACGAGGA +
Preference number: 2 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFSRVRV*FMSGRG
Trigger: TCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCT...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp CACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAAC +
Preference number: 2 (lower is better)
Translates to: HSDVRSLTPDEQVGSRPSAGPIL*QPPCAN
Trigger: GTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGC...AGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCATGGCTTTCGAAGGGCTaGACACTGGGCACTGAAAAC +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSWLSKG*TLGTEN
Trigger: GTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCA...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGAGGGGCTGGCTTTGTaGAGACTGGTTTCCAGTTCT +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSEGLAL*RLVSSS
Trigger: AGAACTGGAAACCAGTCTCCACAAAGCCAGCCCCTC...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp CAGTTTGAGAAGTACCCAGCTGACATCGATCTGACTGCCCTGCTCTGTCCTCTGGCTGTGTCCATGATGTaGCGGGTGGGTGACTCCTTC +
Preference number: 2 (lower is better)
Translates to: QFEKYPADIDLTALLCPLAVSMM*RVGDSF
Trigger: GAAGGAGTCACCCACCCGCCACATCATGGACACAGC...CAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR TCA 90 bp GGTCAGCACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCAC +
Preference number: 2 (lower is better)
Translates to: GQHSDVRSLTPDEQVGSRGRGRL*GQRQMH
Trigger: GTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCC...CCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTGCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCCTGAAGTGGGCCCAGCATGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCT +
Preference number: 2 (lower is better)
Translates to: CFLCLGIDESPVLKWAQHARPPS*GVCLTA
Trigger: AGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGC...ATGCTGGGCCCACTTCAGGACAGGGGACTCGTCAATGCCTAAACACAGAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGTGCATGAGTGCACGCTaGCCAGAAAAACACTGGAAA +
Preference number: 2 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQCMSAR*PEKHWK
Trigger: TTTCCAGTGTTTTTCTGGTCAGCGTGCACTCATGCA...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp CAGTTTGAGAAGTACCCAGCTGACATCGATCTGACTGCCCTGCTCTGTCCTCTGCTCACTATGTCACCCTaGCTGGCCTTGAACTCCCAG +
Preference number: 2 (lower is better)
Translates to: QFEKYPADIDLTALLCPLLTMSP*LALNSQ
Trigger: CTGGGAGTTCAAGGCCAGCCAGGGTGACATAGTGAG...CAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CAA 90 bp CGAGACGGTGTGAAGGTCTGGGTAGCCCTGCTGTCACCAGGGCTGTaGTTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTC +
Preference number: 2 (lower is better)
Translates to: RDGVKVWVALLSPGL*FVDPKLVLAHSTHF
Trigger: GAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAACAGCCCTGGTGACAGCAGGGCTACCCAGACCTTCACACCGTCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR GCA 90 bp GGTCAGCACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGGTGCCAGCCACCCTGTaGAAACTGCAACAGTCTCTT +
Preference number: 2 (lower is better)
Translates to: GQHSDVRSLTPDEQVGSRVPATL*KLQQSL
Trigger: AAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCAC...CCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTGCTGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp AATGTCCACCTCGTAGGGCACGCATGCCTCAGAGCTGCTTCCTACCCCAGGAGCAGCACATATGGGGCATaGTTTCTGTGTTTAGGCATT +
Preference number: 2 (lower is better)
Translates to: NVHLVGHACLRAASYPRSSTYGA*FLCLGI
Trigger: AATGCCTAAACACAGAAAGCATGCCCCATATGTGCT...GCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GGAACGTGCTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGAAGTCTTGAACTCCCAGAGACTTaGCTGCCTTGCCCTCCTGGG +
Preference number: 2 (lower is better)
Translates to: GTCYKCGSGMKNTGFGSLELPET*LPCPPG
Trigger: CCCAGGAGGGCAAGGCAGGCAAGTCTCTGGGAGTTC...AAGACTTCCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CCA 90 bp GGTCAGCACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGGGTGAGACAGGGCTTTaGGTGTGGATTCCTTCTGGA +
Preference number: 2 (lower is better)
Translates to: GQHSDVRSLTPDEQVGSRGETGL*VWIPSG
Trigger: TCCAGAAGGAATCCACACCCAAAGCCCTGTCTCACC...CCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTGCTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGAACCCACAAAGCCTaGAAGGAAGTTGTTTTCCAG +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSGTHKA*KEVVFQ
Trigger: CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCC...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTAACATCATAGACAGGTaGCGGGAACTGGTGCATCTG +
Preference number: 2 (lower is better)
Translates to: HSDVRSLTPDEQVGSRPSNIIDR*RELVHL
Trigger: CAGATGCACCAGTTCCCGTCACCTGTCTATGATGTT...AGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAAC +
Preference number: 2 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSAGPIL*QPPCAN
Trigger: GTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGGCTGGGCAGCACATaGCTTCACCTGCTCAATCAT +
Preference number: 2 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWRLGST*LHLLNH
Trigger: ATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCT...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGGGTGAGACAGGGCTTTaGGTGTGGATTCCTTCTGGA +
Preference number: 2 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWGETGL*VWIPSG
Trigger: TCCAGAAGGAATCCACACCCAAAGCCCTGTCTCACC...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGGAGGGGCTGGCTTTGTaGAGACTGGTTTCCAGTTCT +
Preference number: 2 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWEGLAL*RLVSSS
Trigger: AGAACTGGAAACCAGTCTCCACAAAGCCAGCCCCTC...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGGACTGAACTCAGGCTaGGCAGCACATGCCTTCACC +
Preference number: 2 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSGLNSG*AAHAFT
Trigger: GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp CGGAGCTCTCTGGAGAACATCTCTAGTTTGGTATTACCCGAGATGAGAACCTGGCCCATGAGTGCATGCTaGCTGGGGTCACAAATGGAG +
Preference number: 2 (lower is better)
Translates to: RSSLENISSLVLPEMRTWPMSAC*LGSQME
Trigger: CTCCATTTGTGACCCCAGCCAGCATGCACTCATGGG...CCAGGTTCTCATCTCGGGTAATACCAAACTAGAGATGTTCTCCAGAGAGCTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CAA 90 bp CCCTGCTGTCACCAGGGCTGTTGTTTGTGGACCCAAAACTTGTTCTaGCACACTCTACTCACTTCAGAGAGCTCACAGCTAAACTGGCTG +
Preference number: 2 (lower is better)
Translates to: PCCHQGCCLWTQNLF*HTLLTSESSQLNWL
Trigger: CAGCCAGTTTAGCTGTGAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAACAGCCCTGGTGACAGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR TCA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCAC +
Preference number: 2 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSGRGRL*GQRQMH
Trigger: GTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAGCGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCAC +
Preference number: 2 (lower is better)
Translates to: CASHPVQTATVSSRENESGRGRL*GQRQMH
Trigger: GTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCC...GCTTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CAGTTTGAGAAGTACCCAGCTGACATCGATCTGACTGCCCTGCTCTGTCCTCTGCAGGATAAGAGCTGCTaGGATTTACAGCTGATGGAC +
Preference number: 2 (lower is better)
Translates to: QFEKYPADIDLTALLCPLQDKSC*DLQLMD
Trigger: GTCCATCAGCTGTAAATCTCAGCAGCTCTTATCCTG...CAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR GCA 90 bp AACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAAGCACATATGGGGCATaGTTTCTGTGTTTAGGCATT +
Preference number: 2 (lower is better)
Translates to: NWRSHFSPPPRGSQGLNSSTYGA*FLCLGI
Trigger: AATGCCTAAACACAGAAAGCATGCCCCATATGTGCT...TGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGCGCATGCCTCAGAGCTaGTTCCTACCCCAGGAGCAG +
Preference number: 2 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQRMPQS*FLPQEQ
Trigger: CTGCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCG...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGTCCCCTGTCCTGAAGTaGGCCCAGCATATCTGCCCC +
Preference number: 2 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQSPVLK*AQHICP
Trigger: GGGGCAGATATGCTGGGCCCACTTCAGGACAGGGGA...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp CGGAGCTCTCTGGAGAACATCTCTAGTTTGGTATTACCCGAGATGAGAACCTGGGTGCTGTGGGAAGCATaGCCTTCTTTCACTGTCGAG +
Preference number: 2 (lower is better)
Translates to: RSSLENISSLVLPEMRTWVLWEA*PSFTVE
Trigger: CTCGACAGTGAAAGAAGGCCATGCTTCCCACAGCAC...CCAGGTTCTCATCTCGGGTAATACCAAACTAGAGATGTTCTCCAGAGAGCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CAA 90 bp GTGAGACAGGGCTTTGGGTGTGGATTCCTTCTGGATGACGTATGTTaGCTTCCAAATGTATATGGCTTTCGAAGGGCTGGACACTGGGCA +
Preference number: 2 (lower is better)
Translates to: VRQGFGCGFLLDDVC*LPNVYGFRRAGHWA
Trigger: TGCCCAGTGTCCAGCCCTTCGAAAGCCATATACATTTGGAAGCAAACATACGTCATCCAGAAGGAATCCACACCCAAAGCCCTGTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGGGAATTGATCTTTTGTaGTGCTCCAGCAGAAATGTG +
Preference number: 2 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVGIDLL*CSSRNV
Trigger: CACATTTCTGCTGGAGCATCACAAAAGATCAATTCC...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TTGTTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTCAGAGAGCTCGTGCAGCCTCCTGCTTaGTGCCTGATGCTTCTGTGC +
Preference number: 2 (lower is better)
Translates to: LFVDPKLVLAHSTHFRELVQPPA*CLMLLC
Trigger: GCACAGAAGCATCAGGCATCAAGCAGGAGGCTGCAC...GAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR GCA 90 bp TCAGCCCTGCGAACAGGGTCTACGTTGCTTTCTCTAAAGACAAGTCATGCAGGCTGTGACCACTGGCCGTaGGTATTCTACAAAGTCATC +
Preference number: 2 (lower is better)
Translates to: SALRTGSTLLSLKTSHAGCDHWP*VFYKVI
Trigger: GATGACTTTGTAGAATACGCACGGCCAGTGGTCACA...GCCTGCATGACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCGCAGGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGTTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTCAGAGAGCTCACCTGCCTTGCCCTCCTaGGTGCTGGGATTAAACGTG +
Preference number: 2 (lower is better)
Translates to: CLWTQNLFLHTLLTSESSPALPS*VLGLNV
Trigger: CACGTTTAATCCCAGCACCCAGGAGGGCAAGGCAGG...TGAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CCA 90 bp CAAACAAAAAGTGAGCTGGGCTGTAGTTCAGCTGTAGAGCACTTGTTTAGCATGGACGGTGTGAAGGTCTaGGTAGCCCTGCTGTCACCA +
Preference number: 2 (lower is better)
Translates to: QTKSELGCSSAVEHLFSMDGVKV*VALLSP
Trigger: TGGTGACAGCAGGGCTACCCAGACCTTCACACCGTC...CATGCTAAACAAGTGCTCTACAGCTGAACTACAGCCCAGCTCACTTTTTGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR GCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGCGCTTCTGTGTGTCTaGACGTCAGCCACTGCAGCC +
Preference number: 2 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYALLCV*TSATAA
Trigger: GGCTGCAGTGGCTGACGTGCAGACACACAGAAGCGC...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp TTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTCAGAGAGCTCACACACAGCCAGTGTGCCTaGCTCAAGGCACCACACAAA +
Preference number: 2 (lower is better)
Translates to: FVDPKLVLAHSTHFRELTHSQCA*LKAPHK
Trigger: TTTGTGTGGTGCCTTGAGGCAGGCACACTGGCTGTG...TGTGAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACTCCCCTGTCCTGAAGTaGGCCCAGCATATCTGCCCC +
Preference number: 2 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYSPVLK*AQHICP
Trigger: GGGGCAGATATGCTGGGCCCACTTCAGGACAGGGGA...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGAAGTCTTGGCAAGTGTaGGGTAGGGTCAGCACAGTG +
Preference number: 2 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQKSWQV*GRVSTV
Trigger: CACTGTGCTGACCCTACCTCACACTTGCCAAGACTT...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp CCTGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAAGCAGAGTAAGGGTTTaGTTCATGAGTGGACGAGGA +
Preference number: 2 (lower is better)
Translates to: PVPATLCKLQQSLLEKMKSRVRV*FMSGRG
Trigger: TCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCT...TTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp CAAACAAAAAGTGAGCTGGGCTGTAGTTCAGCTGTAGAGCACTTGTTTAGCATGATGGACAAACTCTGGTaGAGCTCCCATCCACACCTC +
Preference number: 2 (lower is better)
Translates to: QTKSELGCSSAVEHLFSMMDKLW*SSHPHL
Trigger: GAGGTGTGGATGGGAGCTGCACCAGAGTTTGTCCAT...CATGCTAAACAAGTGCTCTACAGCTGAACTACAGCCCAGCTCACTTTTTGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR TCA 90 bp CACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTAGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCT +
Preference number: 2 (lower is better)
Translates to: HKAWKEVVFQVFTKSVWLARPPS*GVCLTA
Trigger: AGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGC...TAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGAACATCATAGACAGGTaGCGGGAACTGGTGCATCTG +
Preference number: 2 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQNIIDR*RELVHL
Trigger: CAGATGCACCAGTTCCCGTCACCTGTCTATGATGTT...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp CATTCTGAGGACACAGGTGCTGCTTTGAAGCATAACTGTAACATGATTCCAGTTGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 2 (lower is better)
Translates to: HSEDTGAALKHNCNMIPVGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...AACTGGAATCATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTCCTCAGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCTGGCTTTCGAAGGGCTaGACACTGGGCACTGAAAAC +
Preference number: 2 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFWLSKG*TLGTEN
Trigger: GTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCA...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTCCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAA +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLIPACDH*PCVFYK
Trigger: TTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGG...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLIALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAGCAGCATAACTGTAACATaGTTCCAGTTTGGAAACGGC +
Preference number: 2 (lower is better)
Translates to: CASHPVQTATVSSRENESSITVT*FQFGNG
Trigger: GCCGTTTCCAAACTGGAATCATGTTACAGTTATGCT...GCTTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGGGGAACTGGTGCATCTaGTTTGTAAATCTAATTCAT +
Preference number: 2 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWGNWCI*FVNLIH
Trigger: ATGAATTAGATTTACAAATCAGATGCACCAGTTCCC...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCTGGACACTGGGCACTaGAAACATCATAGACAGGTG +
Preference number: 2 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFLDTGH*KHHRQV
Trigger: CACCTGTCTATGATGTTTTCAGTGCCCAGTGTCCAG...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTAACCCTCCACCTCCTGTaGGATTCCCGTTCATTAGCA +
Preference number: 2 (lower is better)
Translates to: HKAWKEVVFQVFTKSVWLTLHLL*DSRSLA
Trigger: TGCTAATGAACGGGAATCTCACAGGAGGTGGAGGGT...TAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCACGCATGCCTCAGAGCTaGTTCCTACCCCAGGAGCAG +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPRMPQS*FLPQEQ
Trigger: CTGCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCG...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp AGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAGGTGAGACAGGGCTTTaGGTGTGGATTCCTTCTGGA +
Preference number: 2 (lower is better)
Translates to: RKLFSRFSLSQFGYVRSQGETGL*VWIPSG
Trigger: TCCAGAAGGAATCCACACCCAAAGCCCTGTCTCACC...TTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGTGAGTACATGTGTGTaGGGAGTACATGCATTTCAT +
Preference number: 2 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSVSTCV*GVHAFH
Trigger: ATGAAATGCATGTACTCCCCACACACATGTACTCAC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTAAACATCATAGACAGGTaGCGGGAACTGGTGCATCTG +
Preference number: 2 (lower is better)
Translates to: HKAWKEVVFQVFTKSVWLNIIDR*RELVHL
Trigger: CAGATGCACCAGTTCCCGTCACCTGTCTATGATGTT...TAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTAACATCATAGACAGGTaGCGGGAACTGGTGCATCTG +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLINIIDR*RELVHL
Trigger: CAGATGCACCAGTTCCCGTCACCTGTCTATGATGTT...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAACTGGACACTGGGCACTaGAAACATCATAGACAGGTG +
Preference number: 2 (lower is better)
Translates to: RKLFSRFSLSQFGYVRSQLDTGH*KHHRQV
Trigger: CACCTGTCTATGATGTTTTCAGTGCCCAGTGTCCAG...TTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTCTGGACACTGGGCACTaGAAACATCATAGACAGGTG +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLILDTGH*KHHRQV
Trigger: CACCTGTCTATGATGTTTTCAGTGCCCAGTGTCCAG...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAAGAACCCTCCACCTCCTGTaGGATTCCCGTTCATTAGCA +
Preference number: 2 (lower is better)
Translates to: KLFSRFSLSQFGYVRSQRTLHLL*DSRSLA
Trigger: TGCTAATGAACGGGAATCTCACAGGAGGTGGAGGGT...TCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCAGCAGAGTAAGGGTTTaGTTCATGAGTGGACGAGGA +
Preference number: 2 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFSRVRV*FMSGRG
Trigger: TCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCT...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAAC +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPAGPIL*QPPCAN
Trigger: GTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGC...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCGGAACCCACAAAGCCTaGAAGGAAGTTGTTTTCCAG +
Preference number: 2 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFGTHKA*KEVVFQ
Trigger: CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCC...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CCA 90 bp TGTTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTCAGAGAGCTCAGAAGAACACTGGGTTTaGAAGTCTTCAGAGGAGACA +
Preference number: 2 (lower is better)
Translates to: CLWTQNLFLHTLLTSESSEEHWV*KSSEET
Trigger: TGTCTCCTCTGAAGACTTCCAAACCCAGTGTTCTTC...TGAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR TCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCAC +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPGRGRL*GQRQMH
Trigger: GTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCC...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACTGCATGAGTGCACGCTaGCCAGAAAAACACTGGAAA +
Preference number: 2 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYCMSAR*PEKHWK
Trigger: TTTCCAGTGTTTTTCTGGTCAGCGTGCACTCATGCA...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAAAGCTTGACACCAGATaGGCAGGTAGGATCCAGGCC +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPKLDTR*AGRIQA
Trigger: GGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTT...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLILLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR GCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACTGTGACCACTGGCCGTaGGTATTCTACAAAGTCATC +
Preference number: 2 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYCDHWP*VFYKVI
Trigger: GATGACTTTGTAGAATACGCACGGCCAGTGGTCACA...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp CTTCCAAATGTATATGGCTTTCGAAGGGCTGGACACTGGGCACTGAAAACATCAGGGAACTGGTGCATCTaGTTTGTAAATCTAATTCAT +
Preference number: 2 (lower is better)
Translates to: LPNVYGFRRAGHWALKTSGNWCI*FVNLIH
Trigger: ATGAATTAGATTTACAAATCAGATGCACCAGTTCCC...TGATGTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCATATACATTTGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAAAGTCTTGGCAAGTGTaGGGTAGGGTCAGCACAGTG +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPKSWQV*GRVSTV
Trigger: CACTGTGCTGACCCTACCTCACACTTGCCAAGACTT...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAACCCTCCACCTCCTGTaGGATTCCCGTTCATTAGCA +
Preference number: 2 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPTLHLL*DSRSLA
Trigger: TGCTAATGAACGGGAATCTCACAGGAGGTGGAGGGT...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTAGTATCCCTTGGAATTaGTCTTTTGTGATGCTCCAG +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLISIPWN*SFVMLQ
Trigger: CTGGAGCATCACAAAAGATCAATTCCAAGGGATACT...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR CAA 90 bp CTGCAATCATGTTTCCAAAATCTAGGAGAAGGTTCCAAGTATCCCTaGGAATTGATCTTTTGTGATGCTCCAGCAGAAATGTGTTCCAAA +
Preference number: 2 (lower is better)
Translates to: LQSCFQNLGEGSKYP*ELIFCDAPAEMCSK
Trigger: TTTGGAACACATTTCTGCTGGAGCATCACAAAAGATCAATTCCAAGGGATACTTGGAACCTTCTCCTAGATTTTGGAAACATGATTGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTGGGAACTGGTGCATCTaGTTTGTAAATCTAATTCAT +
Preference number: 2 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLIGNWCI*FVNLIH
Trigger: ATGAATTAGATTTACAAATCAGATGCACCAGTTCCC...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR TCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGGGAACTGGTGCATCTaGTTTGTAAATCTAATTCAT +
Preference number: 2 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYGNWCI*FVNLIH
Trigger: ATGAATTAGATTTACAAATCAGATGCACCAGTTCCC...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp GTGGGCCCAGCATATCTGCCCCACGGCCCTGTAGGCTaGGCAGCAAGGCACGCGTGTGACACCAAGTCTTGG +
Preference number: 3 (lower is better)
Translates to: VGPAYLPHGPVG*AARHACDTKSW
Trigger: CCAAGACTTGGTGTCACACGCGTGCCTTGCTGCCCAGCCTACAGGGCCGTGGGGCAGATATGCTGGGCCCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp GGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTaGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACA +
Preference number: 3 (lower is better)
Translates to: GQLEKSLLPSTT*LAGTELRLGST
Trigger: TGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp GCTGTGTCCATGATGTGGCGGGTGGGTGACTCCTTCTaGTTTCTAGACCTGTGGCCGCGGAGCTCTCTGGAG +
Preference number: 3 (lower is better)
Translates to: AVSMMWRVGDSF*FLDLWPRSSLE
Trigger: CTCCAGAGAGCTCCGCGGCCACAGGTCTAGAAATCAGAAGGAGTCACCCACCCGCCACATCATGGACACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp TCACCCTGGCTGGCCTTGAACTCCCAGAGACTTGCCTaGCTTGCCCTCCTGGGTGCTGGGATTAAACGTGTG +
Preference number: 3 (lower is better)
Translates to: SPWLALNSQRLA*LALLGAGIKRV
Trigger: CACACGTTTAATCCCAGCACCCAGGAGGGCAAGGCAGGCAAGTCTCTGGGAGTTCAAGGCCAGCCAGGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CCA 72 bp AACTCTGGTGCAGCTCCCATCCACACCTCTGTGCTGTaGCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCT +
Preference number: 3 (lower is better)
Translates to: NSGAAPIHTSVL*LSVSSGPVQPP
Trigger: AGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGCCACAGCACAGAGGTGTGGATGGGAGCTGCACCAGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 72 bp CCCATGAGTGCATGCTGGCTGGGGTCACAAATGGAGTaGGACAAGTGTTCCCCACCAGGCCACAGGATGTGC +
Preference number: 3 (lower is better)
Translates to: PMSACWLGSQME*DKCSPPGHRMC
Trigger: GCACATCCTGTGGCCTGGTGGGGAACACTTGTCTCACTCCATTTGTGACCCCAGCCAGCATGCACTCATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 72 bp GTGGCATTCTGCTGTGTCCATGATGTGGCGGGTGGGTaGCTCCTTCTGATTTCTAGACCTGTGGCCGCGGAG +
Preference number: 3 (lower is better)
Translates to: VAFCCVHDVAGG*LLLISRPVAAE
Trigger: CTCCGCGGCCACAGGTCTAGAAATCAGAAGGAGTCACCCACCCGCCACATCATGGACACAGCAGAATGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp CCATGTCCCCGATGTCCCGAGGCGCTTCTGTGTGTCTaGACGTCAGCCACTGCAGCCTTTAAGCAGAGTAAG +
Preference number: 3 (lower is better)
Translates to: PCPRCPEALLCV*TSATAAFKQSK
Trigger: CTTACTCTGCTTAAAGGCTGCAGTGGCTGACGTGCAGACACACAGAAGCGCCTCGGGACATCGGGGACATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR GCA 72 bp GCTGTCCCTACAAGACAGGGTCTAGCACAGCCAGTGTaGCTGCCTCAAGGCACCACACAAAAGCCTCCTGTC +
Preference number: 3 (lower is better)
Translates to: AVPTRQGLAQPV*LPQGTTQKPPV
Trigger: GACAGGAGGCTTTTGTGTGGTGCCTTGAGGCAGGCACACTGGCTGTGCTAGACCCTGTCTTGTAGGGACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CCA 72 bp CCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTaGGCAGCACATGCCTTCACCTGCTCAATCATATCA +
Preference number: 3 (lower is better)
Translates to: PPPRGSQGLNSG*AAHAFTCSIIS
Trigger: TGATATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCCGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGT +
Preference number: 3 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTRTGST*LSLKTS
Trigger: ACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCG...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp ATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGACCGAGGGGCTGGCTTaGTGGAGACTGGTTTCCAGT +
Preference number: 3 (lower is better)
Translates to: MCGGQRTTGEVTSPLHHVTEGLA*WRLVSS
Trigger: ACTGGAAACCAGTCTCCACAAAGCCAGCCCCTCGGT...CACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp AGTGATGTCATCTCACGCACCGAGGGGCTGGCTTTGTaGAGACTGGTTTCCAGTTCTGACCCTCCACCTCCT +
Preference number: 3 (lower is better)
Translates to: SDVISRTEGLAL*RLVSSSDPPPP
Trigger: AGGAGGTGGAGGGTCAGAACTGGAAACCAGTCTCCACAAAGCCAGCCCCTCGGTGCGTGAGATGACATCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp AGACAAGTGTTCCCCACCAGGCCACAGGATGTGCTGTaGGAAGCATGGCCTTCTTTCACTGTCGAGACGGTG +
Preference number: 3 (lower is better)
Translates to: RQVFPTRPQDVL*EAWPSFTVETV
Trigger: CACCGTCTCGACAGTGAAAGAAGGCCATGCTTCCCACAGCACATCCTGTGGCCTGGTGGGGAACACTTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CAA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCCTGGATGACGTATGTTaGCTTCCAAATGTATATGGC +
Preference number: 3 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTLDDVC*LPNVYG
Trigger: GCCATATACATTTGGAAGCAAACATACGTCATCCAG...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp AGTGAACTGGCCGACCAGCTTGTCAACAGTTGGATATaGACCTGCTGGACCTATCCTGTGCCAGCCACCCTG +
Preference number: 3 (lower is better)
Translates to: SELADQLVNSWI*TCWTYPVPATL
Trigger: CAGGGTGGCTGGCACAGGATAGGTCCAGCAGGTTCATATCCAACTGTTGACAAGCTGGTCGGCCAGTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp CTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTaGTGCCTGATGCTTCTGTGCTCACACTCTAACCTG +
Preference number: 3 (lower is better)
Translates to: LSVSSGPVQPPA*CLMLLCSHSNL
Trigger: CAGGTTAGAGTGTGAGCACAGAAGCATCAGGCATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 72 bp GGACGCCATAGGCTCCATCCCTGGTCACACAATGAGTaGAGGAGGAACTGGGTACTGGGTTATCAGCCACTG +
Preference number: 3 (lower is better)
Translates to: GRHRLHPWSHNE*RRNWVLGYQPL
Trigger: CAGTGGCTGATAACCCAGTACCCAGTTCCTCCTTCACTCATTGTGTGACCAGGGATGGAGCCTATGGCGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp TGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATaGCTTCACCTGCTCAATCATATCACTGCTCCTTTC +
Preference number: 3 (lower is better)
Translates to: WLAGTELRLGST*LHLLNHITAPF
Trigger: GAAAGGAGCAGTGATATGATTGAGCAGGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp CATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTaGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCG +
Preference number: 3 (lower is better)
Translates to: HFMAHVWRSEDN*RSHFSPPPRGS
Trigger: CGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp ATGGCCTTCTTTCACTGTCGAGACGGTGTGAAGGTCTaGGTAGCCCTGCTGTCACCAGGGCTGTTGTTTGTG +
Preference number: 3 (lower is better)
Translates to: MAFFHCRDGVKV*VALLSPGLLFV
Trigger: CACAAACAACAGCCCTGGTGACAGCAGGGCTACCCAGACCTTCACACCGTCTCGACAGTGAAAGAAGGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CAA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCGACACAGGTGCTGCTTaGAAGCATAACTGTAACATG +
Preference number: 3 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFDTGAA*KHNCNM
Trigger: CATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTC...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp GTAAGGGTTTGCTTCATGAGTGGACGAGGAAGACTCTaGGGTCAGCGACAAATGCACACAGCAACCCACGCA +
Preference number: 3 (lower is better)
Translates to: VRVCFMSGRGRL*GQRQMHTATHA
Trigger: TGCGTGGGTTGCTGTGTGCATTTGTCGCTGACCTCAGAGTCTTCCTCGTCCACTCATGAAGCAAACCCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp CAGCACATATGGGGCATGCTTTCTGTGTTTAGGCATTaGCGAGTCCCCTGTCCTGAAGTGGGCCCAGCATAT +
Preference number: 3 (lower is better)
Translates to: QHIWGMLSVFRH*RVPCPEVGPAY
Trigger: ATATGCTGGGCCCACTTCAGGACAGGGGACTCGTCAATGCCTAAACACAGAAAGCATGCCCCATATGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp GCTTTTCCATCTAGAAAGGGCTGCGTCTCCCGCCTGTaGCCACTGGCCGTGCGTATTCTACAAAGTCATCTA +
Preference number: 3 (lower is better)
Translates to: AFPSRKGCVSRL*PLAVRILQSHL
Trigger: TAGATGACTTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGGAGACGCAGCCCTTTCTAGATGGAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000203467.3
3UTR TCA 72 bp GGAGACAGCAGGATAAGAGCTGCTGAGATTTACAGCTaGTGGACAAACTCTGGTGCAGCTCCCATCCACACC +
Preference number: 3 (lower is better)
Translates to: GDSRIRAAEIYS*WTNSGAAPIHT
Trigger: GGTGTGGATGGGAGCTGCACCAGAGTTTGTCCATCAGCTGTAAATCTCAGCAGCTCTTATCCTGCTGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp GGTAGGATCCAGGCCCTCTATGCCTGTGTGCATGAGTaGACGCTGACCAGAAAAACACTGGAAAAGCAGATG +
Preference number: 3 (lower is better)
Translates to: GRIQALYACVHE*TLTRKTLEKQM
Trigger: CATCTGCTTTTCCAGTGTTTTTCTGGTCAGCGTGCACTCATGCACACAGGCATAGAGGGCCTGGATCCTACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp CATCTAGAAAGGGCTGCGTCTCCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAAGTCATCTATAAGGAC +
Preference number: 3 (lower is better)
Translates to: HLERAASPACDH*PCVFYKVIYKD
Trigger: GTCCTTATAGATGACTTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGGAGACGCAGCCCTTTCTAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGCTGGATGACGTATGTTaGCTTCCAAATGTATATGGC +
Preference number: 3 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQLDDVC*LPNVYG
Trigger: GCCATATACATTTGGAAGCAAACATACGTCATCCAG...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGAAGCCTGGAAGGAAGTaGTTTTCCAGGTTTTCACTA +
Preference number: 3 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQKPGRK*FSRFSL
Trigger: TAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTT...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp CAGTTTGAGAAGTACCCAGCTGACATCGATCTGACTGCCCTGCTCTGTCCTCTGCACCAGGGCTGTTGTTaGTGGACCCAAAACTTGTTC +
Preference number: 3 (lower is better)
Translates to: QFEKYPADIDLTALLCPLHQGCC*WTQNLF
Trigger: GAACAAGTTTTGGGTCCACAAACAACAGCCCTGGTG...CAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp TCAACAGTTGGATATGAACCTGCTGGACCTATCCTGTaGCAGCCACCCTGTGCAAACTGCAACAGTCTCTTC +
Preference number: 3 (lower is better)
Translates to: STVGYEPAGPIL*QPPCANCNSLF
Trigger: GAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACAGGATAGGTCCAGCAGGTTCATATCCAACTGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR GCA 72 bp AGTGAAATGCCCAAAGCTACCAGTCTTGCCCATGAGTaGATGCTGGCTGGGGTCACAAATGGAGTGAGACAA +
Preference number: 3 (lower is better)
Translates to: SEMPKATSLAHE*MLAGVTNGVRQ
Trigger: TTGTCTCACTCCATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGGTAGCTTTGGGCATTTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CCA 72 bp GTGTGTGGGGAGTACATGCATTTCATGGCACATGTGTaGAGGTCAGAGGACAACTGGAGAAGTCACTTCTCC +
Preference number: 3 (lower is better)
Translates to: VCGEYMHFMAHV*RSEDNWRSHFS
Trigger: GGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp GGTGAAGGTAAACTGGTAAAGGTCCTTGAACTTGGCTaGGTCCTTAAGCTCTTGCTCCAGTCTGGGGAGAAG +
Preference number: 3 (lower is better)
Translates to: GEGKLVKVLELG*VLKLLLQSGEK
Trigger: CTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCCAGCCAAGTTCAAGGACCTTTACCAGTTTACCTTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR TCA 72 bp TTAAAAGCAGTGGGCTCTCGGGCAAGGCCACCTTCCTaGGGCGTGTGTTTAACAGCTTGGACTTGTGTAAAA +
Preference number: 3 (lower is better)
Translates to: LKAVGSRARPPS*GVCLTAWTCVK
Trigger: TTTTACACAAGTCCAAGCTGTTAAACACACGCCTCAGGAAGGTGGCCTTGCCCGAGAGCCCACTGCTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp ATGTATATGGCTTTCGAAGGGCTGGACACTGGGCACTaGAAACATCATAGACAGGTGACGGGAACTGGTGCA +
Preference number: 3 (lower is better)
Translates to: MYMAFEGLDTGH*KHHRQVTGTGA
Trigger: TGCACCAGTTCCCGTCACCTGTCTATGATGTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCATATACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp GGAAGTCTTCAGAGGAGACAGCAGGATAAGAGCTGCTaGGATTTACAGCTGATGGACAAACTCTGGTGCAGC +
Preference number: 3 (lower is better)
Translates to: GSLQRRQQDKSC*DLQLMDKLWCS
Trigger: GCTGCACCAGAGTTTGTCCATCAGCTGTAAATCTCAGCAGCTCTTATCCTGCTGTCTCCTCTGAAGACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 72 bp ACATTCAGTTTGAGAAGTACCCAGCTGACATCGATCTaGCTGCCCTGCTCTGTCCTCTGTCCTCTTAGGCAA +
Preference number: 3 (lower is better)
Translates to: TFSLRSTQLTSI*LPCSVLCPLRQ
Trigger: TTGCCTAAGAGGACAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTGAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR-3UTR CAA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGGACACAGGTGCTGCTTaGAAGCATAACTGTAACATG +
Preference number: 3 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWDTGAA*KHNCNM
Trigger: CATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTC...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp AGGCAGGAAGATCCCACGTTCAAGACCTACGTAAGCTaGGCAAGTCAAACAAAAAGTGAGCTGGGCTGTAGT +
Preference number: 3 (lower is better)
Translates to: RQEDPTFKTYVS*ASQTKSELGCS
Trigger: ACTACAGCCCAGCTCACTTTTTGTTTGACTTGCTCAGCTTACGTAGGTCTTGAACGTGGGATCTTCCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CCA 72 bp GCTGCTTTGAAGCATAACTGTAACATGATTCCAGTTTaGAAACGGCTGGTGCTCACCGTAACGTCAGGAGCT +
Preference number: 3 (lower is better)
Translates to: AALKHNCNMIPV*KRLVLTVTSGA
Trigger: AGCTCCTGACGTTACGGTGAGCACCAGCCGTTTCCAAACTGGAATCATGTTACAGTTATGCTTCAAAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp TGTGAGTACATGTGTGTGGGGAGTACATGCATTTCATaGCACATGTGTGGAGGTCAGAGGACAACTGGAGAA +
Preference number: 3 (lower is better)
Translates to: CEYMCVGSTCIS*HMCGGQRTTGE
Trigger: TTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACACACATGTACTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TACAGCACATATGGGGCATGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCCGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGT +
Preference number: 3 (lower is better)
Translates to: YSTYGACFLCLGIDESPVRTGST*LSLKTS
Trigger: ACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCG...GACAGGGGACTCGTCAATGCCTAAACACAGAAAGCATGCCCCATATGTGCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGCTGGATGACGTATGTTaGCTTCCAAATGTATATGGC +
Preference number: 3 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWLDDVC*LPNVYG
Trigger: GCCATATACATTTGGAAGCAAACATACGTCATCCAG...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCCTGAAGTGGGCCCAGCATAAGTATCCCTTGGAATaGATCTTTTGTGATGCTCCA +
Preference number: 3 (lower is better)
Translates to: CFLCLGIDESPVLKWAQHKYPLE*IFCDAP
Trigger: TGGAGCATCACAAAAGATCAATTCCAAGGGATACTT...ATGCTGGGCCCACTTCAGGACAGGGGACTCGTCAATGCCTAAACACAGAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGACACAGGTGCTGCTTaGAAGCATAACTGTAACATG +
Preference number: 3 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSDTGAA*KHNCNM
Trigger: CATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAAGAACCGAGGGGCTGGCTTaGTGGAGACTGGTTTCCAGT +
Preference number: 3 (lower is better)
Translates to: KLFSRFSLSQFGYVRSQRTEGLA*WRLVSS
Trigger: ACTGGAAACCAGTCTCCACAAAGCCAGCCCCTCGGT...TCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AGGAACTGGGTACTGGGTTATCAGCCACTGAATGTCCCAGAAGTAACATGGCACACCCAAAACTTGTTCTaGCACACTCTACTCACTTCA +
Preference number: 3 (lower is better)
Translates to: RNWVLGYQPLNVPEVTWHTQNLF*HTLLTS
Trigger: TGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGT...GTGCCATGTTACTTCTGGGACATTCAGTGGCTGATAACCCAGTACCCAGTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR GCA 72 bp ATTCTATCACTAGATCAAACAGAGAGGGGAGTGAAATaGCCAAAGCTACCAGTCTTGCCCATGAGTGCATGC +
Preference number: 3 (lower is better)
Translates to: ILSLDQTERGVK*PKLPVLPMSAC
Trigger: GCATGCACTCATGGGCAAGACTGGTAGCTTTGGGCATTTCACTCCCCTCTCTGTTTGATCTAGTGATAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR TCA 72 bp GGCTGGACACTGGGCACTGAAAACATCATAGACAGGTaGCGGGAACTGGTGCATCTGATTTGTAAATCTAAT +
Preference number: 3 (lower is better)
Translates to: GWTLGTENIIDR*RELVHLICKSN
Trigger: ATTAGATTTACAAATCAGATGCACCAGTTCCCGTCACCTGTCTATGATGTTTTCAGTGCCCAGTGTCCAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp TCCAGGCCTATAGTGATAACCTCATTAGAAGTGAACTaGCCGACCAGCTTGTCAACAGTTGGATATGAACCT +
Preference number: 3 (lower is better)
Translates to: SRPIVITSLEVN*PTSLSTVGYEP
Trigger: AGGTTCATATCCAACTGTTGACAAGCTGGTCGGCCAGTTCACTTCTAATGAGGTTATCACTATAGGCCTGGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGCGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGT +
Preference number: 3 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQRTGST*LSLKTS
Trigger: ACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCG...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp AAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTaGTTACGTACGCTCTCAAAGATGTCCCGGTTGTCC +
Preference number: 3 (lower is better)
Translates to: KEVVFQVFTKSV*LRTLSKMSRLS
Trigger: GGACAACCGGGACATCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCGACACAGGTGCTGCTTaGAAGCATAACTGTAACATG +
Preference number: 3 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFDTGAA*KHNCNM
Trigger: CATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTC...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp CTTCCAAATGTATATGGCTTTCGAAGGGCTGGACACTGGGCACTGAAAACATCAGGTTCCAAGTATCCCTaGGAATTGATCTTTTGTGAT +
Preference number: 3 (lower is better)
Translates to: LPNVYGFRRAGHWALKTSGSKYP*ELIFCD
Trigger: ATCACAAAAGATCAATTCCAAGGGATACTTGGAACC...TGATGTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCATATACATTTGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCTGGATGACGTATGTTaGCTTCCAAATGTATATGGC +
Preference number: 3 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFLDDVC*LPNVYG
Trigger: GCCATATACATTTGGAAGCAAACATACGTCATCCAG...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CCA 72 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTaGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCA +
Preference number: 3 (lower is better)
Translates to: TEVNYKSGTHKA*KEVVFQVFTKS
Trigger: TGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAAGACGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGT +
Preference number: 3 (lower is better)
Translates to: KLFSRFSLSQFGYVRSQRRTGST*LSLKTS
Trigger: ACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCG...TCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp AAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAAGATTTGCTAAATTCACATaGAGTGGCGGCCCTGAACTT +
Preference number: 3 (lower is better)
Translates to: KLFSRFSLSQFGYVRSQRFAKFT*SGGPEL
Trigger: AAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAAA...TCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCACGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGT +
Preference number: 3 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPRTGST*LSLKTS
Trigger: ACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCG...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR-3UTR CAA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAGACACAGGTGCTGCTTaGAAGCATAACTGTAACATG +
Preference number: 3 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPDTGAA*KHNCNM
Trigger: CATGTTACAGTTATGCTTCAAAGCAGCACCTGTGTC...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR TCA 72 bp AAATCTAGAGATTTGATAATTCAAAACTATCCATCTTaGATACCAAGATTAAAAGCAGTGGGCTCTCGGGCA +
Preference number: 3 (lower is better)
Translates to: KSRDLIIQNYPS*IPRLKAVGSRA
Trigger: TGCCCGAGAGCCCACTGCTTTTAATCTTGGTATTCAAGATGGATAGTTTTGAATTATCAAATCTCTAGATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp GTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGACCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: VTRHRPRRRQVRQGFGCGPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...TCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGGCTCCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWAPKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGGAGC...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000110840.8
CDS-3UTR TCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCCCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTNASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp ATGCAGGCGGCTTCTAAAGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCGCTAGCCTGAGTGCATaGCATGAACTGGCGGACCTT +
Preference number: 4 (lower is better)
Translates to: MQAASKALGLPMSPMSRGASLSA*HELADL
Trigger: AAGGTCCGCCAGTTCATGGCATGCACTCAGGCTAGC...GCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCTTTAGAAGCCGCCTGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp AGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCGCTTCTGTGTGTCTGCAGCTAGCCTGAGTGCATaGCATGAACTGGCGGACCTT +
Preference number: 4 (lower is better)
Translates to: STRSAHVPDVPRRFCVSAASLSA*HELADL
Trigger: AAGGTCCGCCAGTTCATGGCATGCACTCAGGCTAGC...TGCAGACACACAGAAGCGCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWYLLYS*SSFFWS
Trigger: GGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTA...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCGTGGGTCTTTGTACCTaGTGTACAGTTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTVGLCT*CTVAPA
Trigger: AGCTGGAGCAACTGTACAGCAGGTACAAAGACCCAC...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGCTAGCCTGAGTGCATaGCATGAACTGGCGGACCTT +
Preference number: 4 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQASLSA*HELADL
Trigger: AAGGTCCGCCAGTTCATGGCATGCACTCAGGCTAGC...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp AATGTCCACCTCGTAGGGCACGCATGCCTCAGAGCTGCTTCCTACCCCAGGAGCGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: NVHLVGHACLRAASYPRSGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...GCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp ATGCAGGCGGCTTCTAAAGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: MQAASKALGLPMSPMSRGGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...GCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCTTTAGAAGCCGCCTGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp CCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGGGCAGCACATGCCTTCACCTGTGACCACTGGCCGTaGGTATTCTACAAAGTCATC +
Preference number: 4 (lower is better)
Translates to: PPRGSQGLNSGWAAHAFTCDHWP*VFYKVI
Trigger: GATGACTTTGTAGAATACGCACGGCCAGTGGTCACA...GGTGAAGGCATGTGCTGCCCAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110840.8
CDS-3UTR CCA 90 bp AATGTCCACCTCGTAGGGCACGCATGCCTCAGAGCTGCTTCCTACCCCAGGAGCAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: NVHLVGHACLRAASYPRSNASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...GCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGTGCTCCAGCTTCTTCTaGTCCACACTGCTCTTCATA +
Preference number: 4 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWCSSFF*STLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp TGGAAACGGCTGGTGCTCACCGTAACGTCAGGAGCTGGACAGCAAGCTCTCAGCCCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAA +
Preference number: 4 (lower is better)
Translates to: WKRLVLTVTSGAGQQALSPACDH*PCVFYK
Trigger: TTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGG...GCTGAGAGCTTGCTGTCCAGCTCCTGACGTTACGGTGAGCACCAGCCGTTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110840.8
3UTR CAA 72 bp TTGAGACAGAGGCTCACTATGTCACCCTGGCTGGCCTaGAACTCCCAGAGACTTGCCTGCCTTGCCCTCCTG +
Preference number: 4 (lower is better)
Translates to: LRQRLTMSPWLA*NSQRLACLALL
Trigger: CAGGAGGGCAAGGCAGGCAAGTCTCTGGGAGTTCAAGGCCAGCCAGGGTGACATAGTGAGCCTCTGTCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR GCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCGTGGGTCTTTGTACCTaGTGTACAGTTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFVGLCT*CTVAPA
Trigger: AGCTGGAGCAACTGTACAGCAGGTACAAAGACCCAC...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp CTCTGTGCTGTGGCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTGATGGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: LCAVALCKQRTCAASCLMGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...CATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGCCACAGCACAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp ACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCCTTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 4 (lower is better)
Translates to: TAQTQAQTGETGLWVWIPLLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...AGGAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR TCA 90 bp AATGTCCACCTCGTAGGGCACGCATGCCTCAGAGCTGCTTCCTACCCCAGGAGCTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 4 (lower is better)
Translates to: NVHLVGHACLRAASYPRSLLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...GCTCCTGGGGTAGGAAGCAGCTCTGAGGCATGCGTGCCCTACGAGGTGGACATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp CCCAAAGCTACCAGTCTTGCCCATGAGTGCATGCTGGCTGGGGTCACAAATGGAGCTAGCCTGAGTGCATaGCATGAACTGGCGGACCTT +
Preference number: 4 (lower is better)
Translates to: PKATSLAHECMLAGVTNGASLSA*HELADL
Trigger: AAGGTCCGCCAGTTCATGGCATGCACTCAGGCTAGC...TCCATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGGTAGCTTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR GCA 90 bp ACCAAGATTAAAAGCAGTGGGCTCTCGGGCAAGGCCACCTTCCTGAGGCGTGTGGGGTCCTTAAGCTCTTaGTCCAGTCTGGGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: TKIKSSGLSGKATFLRRVGSLSS*SSLGRR
Trigger: TCTTCTCCCCAGACTGGAGCAAGAGCTTAAGGACCC...CACACGCCTCAGGAAGGTGGCCTTGCCCGAGAGCCCACTGCTTTTAATCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CCA 90 bp ACCAAGATTAAAAGCAGTGGGCTCTCGGGCAAGGCCACCTTCCTGAGGCGTGTGAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: TKIKSSGLSGKATFLRRVNASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...CACACGCCTCAGGAAGGTGGCCTTGCCCGAGAGCCCACTGCTTTTAATCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp AGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCGCTTCTGTGTGTCTGCATGCTCCAGCTTCTTCTaGTCCACACTGCTCTTCATA +
Preference number: 4 (lower is better)
Translates to: STRSAHVPDVPRRFCVSACSSFF*STLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA...TGCAGACACACAGAAGCGCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR TCA 90 bp ATGCAGGCGGCTTCTAAAGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCCGGACCTTGTCCTTCTaGGCTGATTTAAGTTTATGC +
Preference number: 4 (lower is better)
Translates to: MQAASKALGLPMSPMSRGRTLSF*ADLSLC
Trigger: GCATAAACTTAAATCAGCTCAGAAGGACAAGGTCCG...GCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCTTTAGAAGCCGCCTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp AGAGTCCGGAACGTGCTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGCCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: RVRNVLQVWFWHEEHWVWPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...CCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCCGGACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGAGTATCCCTTGGAATTaGTCTTTTGTGATGCTCCTA +
Preference number: 4 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWSIPWN*SFVMLL
Trigger: TAGGAGCATCACAAAAGATCAATTCCAAGGGATACT...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110838.8
CDS-3UTR CCA 90 bp ACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGATTCGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: TRHRPRRRQVRQGFGCGFGRNCL*PHLVST
Trigger: AGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCC...GAATCCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp CTCTGTGCTGTGGCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTGATGTGCTCCAGCTTCTTCTaGTCCACACTGCTCTTCATA +
Preference number: 4 (lower is better)
Translates to: LCAVALCKQRTCAASCLMCSSFF*STLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA...CATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGCCACAGCACAGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CAA 72 bp GACAGCAAGCTCTCAGCCCTGCGAACAGGGTCTACGTaGCTTTCTCTAAAGACAAGTCATGCAGGCGGCTTC +
Preference number: 4 (lower is better)
Translates to: DSKLSALRTGST*LSLKTSHAGGF
Trigger: GAAGCCGCCTGCATGACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCGCAGGGCTGAGAGCTTGCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CAA 72 bp ACAGAGAGGGGAGTGAAATGCCCAAAGCTACCAGTCTaGCCCATGAGTGCATGCTGGCTGGGGTCACAAATG +
Preference number: 4 (lower is better)
Translates to: TERGVKCPKLPV*PMSACWLGSQM
Trigger: CATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGGTAGCTTTGGGCATTTCACTCCCCTCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp GCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTGATGCCTGATGCTTCTTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 4 (lower is better)
Translates to: ALCKQRTCAASCLMPDASLLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...AGAAGCATCAGGCATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR GCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGGTGGGTCTTTGTACCTaGTGTACAGTTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVVGLCT*CTVAPA
Trigger: AGCTGGAGCAACTGTACAGCAGGTACAAAGACCCAC...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CCA 90 bp AGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: RSEDNWRSHFSPPPRGSQGRNCL*PHLVST
Trigger: AGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCC...CTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp AGAGTCCGGAACGTGCTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: RVRNVLQVWFWHEEHWVWALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...CCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCCGGACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
3UTR CAA 72 bp GTGAAGGTCTGGGTAGCCCTGCTGTCACCAGGGCTGTaGTTTGTGGACCCAAAACTTGTTCTTGCACACTCT +
Preference number: 4 (lower is better)
Translates to: VKVWVALLSPGL*FVDPKLVLAHS
Trigger: AGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAACAGCCCTGGTGACAGCAGGGCTACCCAGACCTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp TGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAGCCCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: CASHPVQTATVSSRENESPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...GCTTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp CCCAAAGCTACCAGTCTTGCCCATGAGTGCATGCTGGCTGGGGTCACAAATGGAAAATCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 4 (lower is better)
Translates to: PKATSLAHECMLAGVTNGKSKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGATTT...TCCATTTGTGACCCCAGCCAGCATGCACTCATGGGCAAGACTGGTAGCTTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CCA 90 bp GTCTGCACGTCAGCCACTGCAGCCTTTAAGCAGAGTAAGGGTTTGCTTCATGAGAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: VCTSATAAFKQSKGLLHENASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...CTCATGAAGCAAACCCTTACTCTGCTTAAAGGCTGCAGTGGCTGACGTGCAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp GTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTATGCCTGTGTGCTCCAGCTTCTTCTaGTCCACACTGCTCTTCATA +
Preference number: 4 (lower is better)
Translates to: VRSLTPDEQVGSRPSMPVCSSFF*STLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA...CACAGGCATAGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp ACCAAGATTAAAAGCAGTGGGCTCTCGGGCAAGGCCACCTTCCTGAGGCGTGTGAGTATCCCTTGGAATTaGTCTTTTGTGATGCTCCAG +
Preference number: 4 (lower is better)
Translates to: TKIKSSGLSGKATFLRRVSIPWN*SFVMLQ
Trigger: CTGGAGCATCACAAAAGATCAATTCCAAGGGATACT...CACACGCCTCAGGAAGGTGGCCTTGCCCGAGAGCCCACTGCTTTTAATCTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045366.10
CDS-3UTR GCA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWYLLYS*SSFFWS
Trigger: GGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTA...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp TGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCCTGAAGTGGGCCCAGCATAAATCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 4 (lower is better)
Translates to: CFLCLGIDESPVLKWAQHKSKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGATTT...ATGCTGGGCCCACTTCAGGACAGGGGACTCGTCAATGCCTAAACACAGAAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110839.10
CDS-3UTR CCA 90 bp TGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: CISWHMCGGQRTTGEVTSALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...AGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
3UTR CAA 72 bp ACGTCAGCCACTGCAGCCTTTAAGCAGAGTAAGGGTTaGCTTCATGAGTGGACGAGGAAGACTCTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: TSATAAFKQSKG*LHEWTRKTLRS
Trigger: TGACCTCAGAGTCTTCCTCGTCCACTCATGAAGCAAACCCTTACTCTGCTTAAAGGCTGCAGTGGCTGACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp TGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCCTGAAGTGGGCCCAGCATCGGACCTTGTCCTTCTaGGCTGATTTAAGTTTATGC +
Preference number: 4 (lower is better)
Translates to: CFLCLGIDESPVLKWAQHRTLSF*ADLSLC
Trigger: GCATAAACTTAAATCAGCTCAGAAGGACAAGGTCCG...ATGCTGGGCCCACTTCAGGACAGGGGACTCGTCAATGCCTAAACACAGAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp GGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTCCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: GTHKAWKEVVFQVFTKSVPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...AACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp TACAGCACATATGGGGCATGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: YSTYGACFLCLGIDESPVYLLYS*SSFFWS
Trigger: GGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTA...GACAGGGGACTCGTCAATGCCTAAACACAGAAAGCATGCCCCATATGTGCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp GTCTGCACGTCAGCCACTGCAGCCTTTAAGCAGAGTAAGGGTTTGCTTCATGAGTGTGACCACTGGCCGTaGGTATTCTACAAAGTCATC +
Preference number: 4 (lower is better)
Translates to: VCTSATAAFKQSKGLLHECDHWP*VFYKVI
Trigger: GATGACTTTGTAGAATACGCACGGCCAGTGGTCACA...CTCATGAAGCAAACCCTTACTCTGCTTAAAGGCTGCAGTGGCTGACGTGCAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110840.8
CDS-3UTR CCA 90 bp GGTCAGCACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: GQHSDVRSLTPDEQVGSRGRNCL*PHLVST
Trigger: AGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCC...CCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTGCTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp GCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAGCAAACCCGCCTGTGACCACTaGCCGTGCGTATTCTACAAA +
Preference number: 4 (lower is better)
Translates to: ASHPVQTATVSSRENESKPACDH*PCVFYK
Trigger: TTTGTAGAATACGCACGGCCAGTGGTCACAGGCGGG...TTTGCTTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110840.8
CDS-3UTR TCA 90 bp TACAGCACATATGGGGCATGCTTTCTGTGTTTAGGCATTGACGAGTCCCCTGTCTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 4 (lower is better)
Translates to: YSTYGACFLCLGIDESPVLLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...GACAGGGGACTCGTCAATGCCTAAACACAGAAAGCATGCCCCATATGTGCTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp AAATGTATATGGCTTTCGAAGGGCTGGACACTGGGCACTGAAAACATCATAGACGCTAGCCTGAGTGCATaGCATGAACTGGCGGACCTT +
Preference number: 4 (lower is better)
Translates to: KCIWLSKGWTLGTENIIDASLSA*HELADL
Trigger: AAGGTCCGCCAGTTCATGGCATGCACTCAGGCTAGC...GTCTATGATGTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCATATACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp GGAACGTGCTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGAAGTCTTGTGGGTCTTTGTACCTaGTGTACAGTTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GTCYKCGSGMKNTGFGSLVGLCT*CTVAPA
Trigger: AGCTGGAGCAACTGTACAGCAGGTACAAAGACCCAC...AAGACTTCCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CCA 90 bp TCAGCCCTGCGAACAGGGTCTACGTTGCTTTCTCTAAAGACAAGTCATGCAGGCGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: SALRTGSTLLSLKTSHAGGRNCL*PHLVST
Trigger: AGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCC...GCCTGCATGACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCGCAGGGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp GGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: GTHKAWKEVVFQVFTKSVALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...AACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
3UTR CAA 72 bp TGCTGTCACCAGGGCTGTTGTTTGTGGACCCAAAACTaGTTCTTGCACACTCTACTCACTTCAGAGAGCTCA +
Preference number: 4 (lower is better)
Translates to: CCHQGCCLWTQN*FLHTLLTSESS
Trigger: TGAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAACAGCCCTGGTGACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp AGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAACCTGAGTGCATGCCATaGACTGGCGGACCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: RKLFSRFSLSQFGYVRSQPECMP*TGGPCP
Trigger: AGGACAAGGTCCGCCAGTTCATGGCATGCACTCAGG...TTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp GTCTGCACGTCAGCCACTGCAGCCTTTAAGCAGAGTAAGGGTTTGCTTCATGAGGGAATTGATCTTTTGTaGTGCTCCAGCAGAAATGTG +
Preference number: 4 (lower is better)
Translates to: VCTSATAAFKQSKGLLHEGIDLL*CSSRNV
Trigger: CACATTTCTGCTGGAGCATCACAAAAGATCAATTCC...CTCATGAAGCAAACCCTTACTCTGCTTAAAGGCTGCAGTGGCTGACGTGCAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045366.10
CDS-3UTR GCA 90 bp CTTCCAAATGTATATGGCTTTCGAAGGGCTGGACACTGGGCACTGAAAACATCAGTGGGTCTTTGTACCTaGTGTACAGTTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LPNVYGFRRAGHWALKTSVGLCT*CTVAPA
Trigger: AGCTGGAGCAACTGTACAGCAGGTACAAAGACCCAC...TGATGTTTTCAGTGCCCAGTGTCCAGCCCTTCGAAAGCCATATACATTTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCGCTCCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 4 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFAPKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGGAGC...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110838.8
ENSMUST00000110840.8
CDS-3UTR CCA 90 bp TTGTTTGTGGACCCAAAACTTGTTCTTGCACACTCTACTCACTTCAGAGAGCTCAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LFVDPKLVLAHSTHFRELNASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...GAGCTCTCTGAAGTGAGTAGAGTGTGCAAGAACAAGTTTTGGGTCCACAAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CCA 90 bp CCTGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAATGCTCCAGCTTCTTCTaGTCCACACTGCTCTTCATA +
Preference number: 4 (lower is better)
Translates to: PVPATLCKLQQSLLEKMKCSSFF*STLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA...TTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp AACTGTAACATGATTCCAGTTTGGAAACGGCTGGTGCTCACCGTAACGTCAGGACGGACCTTGTCCTTCTaGGCTGATTTAAGTTTATGC +
Preference number: 4 (lower is better)
Translates to: NCNMIPVWKRLVLTVTSGRTLSF*ADLSLC
Trigger: GCATAAACTTAAATCAGCTCAGAAGGACAAGGTCCG...TCCTGACGTTACGGTGAGCACCAGCCGTTTCCAAACTGGAATCATGTTACAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp CAAACAAAAAGTGAGCTGGGCTGTAGTTCAGCTGTAGAGCACTTGTTTAGCATGTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: QTKSELGCSSAVEHLFSMYLLYS*SSFFWS
Trigger: GGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTA...CATGCTAAACAAGTGCTCTACAGCTGAACTACAGCCCAGCTCACTTTTTGTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CCA 90 bp AGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAGCTCTTGCTCCAGTCTaGGGAGAAGAGCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: RKLFSRFSLSQFGYVRSQALAPV*GEELSA
Trigger: GGCTGAAAGCTCTTCTCCCCAGACTGGAGCAAGAGC...TTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
3UTR CAA 72 bp GGCTTTGGGTGTGGATTCCTTCTGGATGACGTATGTTaGCTTCCAAATGTATATGGCTTTCGAAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: GFGCGFLLDDVC*LPNVYGFRRAG
Trigger: TCCAGCCCTTCGAAAGCCATATACATTTGGAAGCAAACATACGTCATCCAGAAGGAATCCACACCCAAAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR GCA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFYLLYS*SSFFWS
Trigger: GGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTA...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR GCA 90 bp GGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTAAATCTAAGCCCTTCTaGCCAGGGTTCTTAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GTHKAWKEVVFQVFTKSVKSKPF*PGFLAK
Trigger: CTTCGCTAAGAACCCTGGGCAGAAGGGCTTAGATTT...AACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110839.10
CDS-3UTR CCA 90 bp CACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTAAACGCCTCGGGGTTTTaGAAGAAACTGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: HKAWKEVVFQVFTKSVWLNASGF*KKLSVA
Trigger: GGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTT...TAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp TTACACATACATGGTAGCAGGGCACCACTAGACAAGATCCAGTCCACCCTAGAGAAGCTTCCTTTTGGTTaGGCACAAAAGGTAAGAAAC +
Preference number: 4 (lower is better)
Translates to: LHIHGSRAPLDKIQSTLEKLPFG*AQKVRN
Trigger: GTTTCTTACCTTTTGTGCCCAACCAAAAGGAAGCTT...CTCTAGGGTGGACTGGATCTTGTCTAGTGGTGCCCTGCTACCATGTATGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR TCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACTTGCTAAATTCACATTaGGTGGCGGCCCTGAACTTC +
Preference number: 4 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYLLNSH*VAALNF
Trigger: GAAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAA...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR TCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACCGGACCTTGTCCTTCTaGGCTGATTTAAGTTTATGC +
Preference number: 4 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYRTLSF*ADLSLC
Trigger: GCATAAACTTAAATCAGCTCAGAAGGACAAGGTCCG...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CCA 90 bp ACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACT +
Preference number: 4 (lower is better)
Translates to: TKPGRKLFSRFSLSQFGYGRNCL*PHLVST
Trigger: AGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCC...GTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CAA 72 bp CAAAATCTAGGAGAAGGTTCCAAGTATCCCTTGGAATaGATCTTTTGTGATGCTCCAGCAGAAATGTGTTCC +
Preference number: 4 (lower is better)
Translates to: QNLGEGSKYPLE*IFCDAPAEMCS
Trigger: GGAACACATTTCTGCTGGAGCATCACAAAAGATCAATTCCAAGGGATACTTGGAACCTTCTCCTAGATTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
CDS-3UTR TCA 90 bp AAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAAGACGGACCTTGTCCTTCTaGGCTGATTTAAGTTTATGC +
Preference number: 4 (lower is better)
Translates to: KLFSRFSLSQFGYVRSQRRTLSF*ADLSLC
Trigger: GCATAAACTTAAATCAGCTCAGAAGGACAAGGTCCG...TCTTTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
3UTR CAA 72 bp TGTTTCCAAAATCTAGGAGAAGGTTCCAAGTATCCCTaGGAATTGATCTTTTGTGATGCTCCAGCAGAAATG +
Preference number: 4 (lower is better)
Translates to: CFQNLGEGSKYP*ELIFCDAPAEM
Trigger: CATTTCTGCTGGAGCATCACAAAAGATCAATTCCAAGGGATACTTGGAACCTTCTCCTAGATTTTGGAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGAAACGCCTCGGGGTTTaGGAAGAAACTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWKRLGV*EETVCG
Trigger: GCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTT...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp GAGAAGTCACTTCTCCCCTCCACCACGTGGCTCGCAGGGACTGAACTCAGGCTGAAACGCCTCGGGGTTTaGGAAGAAACTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: EKSLLPSTTWLAGTELRLKRLGV*EETVCG
Trigger: GCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTT...CAGCCTGAGTTCAGTCCCTGCGAGCCACGTGGTGGAGGGGAGAAGTGACTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp ATGCAGGCGGCTTCTAAAGCACTAGGTCTGCCCATGTCCCCGATGTCCCGAGGCAAACGCCTCGGGGTTTaGGAAGAAACTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: MQAASKALGLPMSPMSRGKRLGV*EETVCG
Trigger: GCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTT...GCCTCGGGACATCGGGGACATGGGCAGACCTAGTGCTTTAGAAGCCGCCTGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp GGTGACACGGCACAGACCCAGGCGCAGACAGGTGAGACAGGGCTTTGGGTGTGGAAGTATCCCTTGGAATaGATCTTTTGTGATGCTCCT +
Preference number: 5 (lower is better)
Translates to: GDTAQTQAQTGETGLWVWKYPLE*IFCDAP
Trigger: AGGAGCATCACAAAAGATCAATTCCAAGGGATACTT...CCACACCCAAAGCCCTGTCTCACCTGTCTGCGCCTGGGTCTGTGCCGTGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110838.8
CDS-3UTR CAA 90 bp CAGTTTGAGAAGTACCCAGCTGACATCGATCTGACTGCCCTGCTCTGTCCTCTGGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: QFEKYPADIDLTALLCPLVPAVQ*LQLLLV
Trigger: GACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTAC...CAGAGGACAGAGCAGGGCAGTCAGATCGATGTCAGCTGGGTACTTCTCAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS TCA 90 bp TGCTCCAGCTTCTTCTGGTCCACACTGCTCTTCATAGACTCTCGGTaGAACGCCTCGGGGTTTTGGAAGAAACTGTCTGTGGCCTCATCT +
Preference number: 5 (lower is better)
Translates to: CSSFFWSTLLFIDSR*NASGFWKKLSVASS
Trigger: AGATGAGGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTTCACCGAGAGTCTATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
ENSMUST00000203604.2
CDS-3UTR CAA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGAAACGCCTCGGGGTTTaGGAAGAAACTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWKRLGV*EETVCG
Trigger: GCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTT...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp TCAGCCCTGCGAACAGGGTCTACGTTGCTTTCTCTAAAGACAAGTCATGCAGGCGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: SALRTGSTLLSLKTSHAGVPAVQ*LQLLLV
Trigger: GACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTAC...GCCTGCATGACTTGTCTTTAGAGAAAGCAACGTAGACCCTGTTCGCAGGGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp TGTGGGGAGTACATGCATTTCATGGCACATGTGTGGAGGTCAGAGGACAACTGGGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: CGEYMHFMAHVWRSEDNWVPAVQ*LQLLLV
Trigger: GACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTAC...CCAGTTGTCCTCTGACCTCCACACATGTGCCATGAAATGCATGTACTCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp CTCTGTGCTGTGGCTCTCTGTAAGCAGCGGACCTGTGCAGCCTCCTGCTTGATGAAAGCTTCCTTTTGGTaGGGCACAAAAGGTAAGAAA +
Preference number: 5 (lower is better)
Translates to: LCAVALCKQRTCAASCLMKASFW*GTKGKK
Trigger: TTTCTTACCTTTTGTGCCCAACCAAAAGGAAGCTTT...CATCAAGCAGGAGGCTGCACAGGTCCGCTGCTTACAGAGAGCCACAGCACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CAA 90 bp CACAGTGATGTTCGAAGCTTGACACCAGATGAGCAGGTAGGATCCAGGCCCTCTTTTGCTAAATTCACATaGAGTGGCGGCCCTGAACTT +
Preference number: 5 (lower is better)
Translates to: HSDVRSLTPDEQVGSRPSFAKFT*SGGPEL
Trigger: AAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAAA...AGAGGGCCTGGATCCTACCTGCTCATCTGGTGTCAAGCTTCGAACATCACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS GCA 90 bp CCAATTTTGTTTTCGTCCTGTGGGTCTTTGTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCCACACTGCTCTTCATAGACTCTCGG +
Preference number: 5 (lower is better)
Translates to: PILFSSCGSLYLLYS*SSFFWSTLLFIDSR
Trigger: CCGAGAGTCTATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTACAAAGACCCACAGGACGAAAACAAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203604.2
CDS-3UTR CAA 90 bp AGAGTCCGGAACGTGCTACAAGTGTGGTTCTGGCATGAAGAACACTGGGTTTGGTTTGCTAAATTCACATaGAGTGGCGGCCCTGAACTT +
Preference number: 5 (lower is better)
Translates to: RVRNVLQVWFWHEEHWVWFAKFT*SGGPEL
Trigger: AAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAAA...CCAAACCCAGTGTTCTTCATGCCAGAACCACACTTGTAGCACGTTCCGGACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203604.2
CDS-3UTR CAA 90 bp ATGTGTGGAGGTCAGAGGACAACTGGAGAAGTCACTTCTCCCCTCCACCACGTGAAGTATCCCTTGGAATaGATCTTTTGTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: MCGGQRTTGEVTSPLHHVKYPLE*IFCDAP
Trigger: TGGAGCATCACAAAAGATCAATTCCAAGGGATACTT...CACGTGGTGGAGGGGAGAAGTGACTTCTCCAGTTGTCCTCTGACCTCCACACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045366.10
CDS-3UTR CAA 90 bp GAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCCAGAAACGCCTCGGGGTTTaGGAAGAAACTGTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: EVNYKSGTHKAWKEVVFQKRLGV*EETVCG
Trigger: GCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTT...CTGGAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
CDS-3UTR CAA 90 bp AAAATAAGAAACTTCTCAGGAGGCAGCATCCAGGCCTATAGTGATAACCTCATTGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: KIRNFSGGSIQAYSDNLIVPAVQ*LQLLLV
Trigger: GACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTAC...AATGAGGTTATCACTATAGGCCTGGATGCTGCCTCCTGAGAAGTTTCTTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp CCTGTGCCAGCCACCCTGTGCAAACTGCAACAGTCTCTTCTAGAGAAAATGAAAGGTTCCAAGTATCCCTaGGAATTGATCTTTTGTGAT +
Preference number: 5 (lower is better)
Translates to: PVPATLCKLQQSLLEKMKGSKYP*ELIFCD
Trigger: ATCACAAAAGATCAATTCCAAGGGATACTTGGAACC...TTTCATTTTCTCTAGAAGAGACTGTTGCAGTTTGCACAGGGTGGCTGGCACAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
CDS-3UTR CAA 90 bp ACAGAAGTTAACTACAAGTCAGGAACCCACAAAGCCTGGAAGGAAGTTGTTTTCTTTGCTAAATTCACATaGAGTGGCGGCCCTGAACTT +
Preference number: 5 (lower is better)
Translates to: TEVNYKSGTHKAWKEVVFFAKFT*SGGPEL
Trigger: AAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAAA...GAAAACAACTTCCTTCCAGGCTTTGTGGGTTCCTGACTTGTAGTTAACTTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp TGTTTAAAAAGCCTTTATCAATTACTGGTATGTCACAGCCTATTGACAATCCCAGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTC +
Preference number: 5 (lower is better)
Translates to: CLKSLYQLLVCHSLLTIPVPAVQ*LQLLLV
Trigger: GACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTAC...TGGGATTGTCAATAGGCTGTGACATACCAGTAATTGATAAAGGCTTTTTAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp CACAAAGCCTGGAAGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTATTTGCTAAATTCACATaGAGTGGCGGCCCTGAACTT +
Preference number: 5 (lower is better)
Translates to: HKAWKEVVFQVFTKSVWLFAKFT*SGGPEL
Trigger: AAGTTCAGGGCCGCCACTCAATGTGAATTTAGCAAA...TAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCTTCCAGGCTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
CDS-3UTR CAA 90 bp AGGAAGTTGTTTTCCAGGTTTTCACTAAGTCAGTTTGGTTACGTACGCTCTCAAGGTTCCAAGTATCCCTaGGAATTGATCTTTTGTGAT +
Preference number: 5 (lower is better)
Translates to: RKLFSRFSLSQFGYVRSQGSKYP*ELIFCD
Trigger: ATCACAAAAGATCAATTCCAAGGGATACTTGGAACC...TTGAGAGCGTACGTAACCAAACTGACTTAGTGAAAACCTGGAAAACAACTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
CDS TCA 72 bp TTCTTCTGGTCCACACTGCTCTTCATAGACTCTCGGTaGAACGCCTCGGGGTTTTGGAAGAAACTGTCTGTG +
Preference number: 6 (lower is better)
Translates to: FFWSTLLFIDSR*NASGFWKKLSV
Trigger: CACAGACAGTTTCTTCCAAAACCCCGAGGCGTTTCACCGAGAGTCTATGAAGAGCAGTGTGGACCAGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
ENSMUST00000203604.2
CDS CCA 72 bp GGTGAAACGCCTCGGGGTTTTGGAAGAAACTGTCTGTaGCCTCATCTAGTTTCCACTCATTCTGTGTCAAGC +
Preference number: 6 (lower is better)
Translates to: GETPRGFGRNCL*PHLVSTHSVSS
Trigger: GCTTGACACAGAATGAGTGGAAACTAGATGAGGCCACAGACAGTTTCTTCCAAAACCCCGAGGCGTTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203467.3
ENSMUST00000203604.2
CDS CAA 72 bp GTTTTCGTCCTGTGGGTCTTTGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTCCACACTGCTCTTCAT +
Preference number: 6 (lower is better)
Translates to: VFVLWVFVPAVQ*LQLLLVHTALH
Trigger: ATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTACAAAGACCCACAGGACGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203604.2
CDS GCA 72 bp TTTTCGTCCTGTGGGTCTTTGTACCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCCACACTGCTCTTCATA +
Preference number: 6 (lower is better)
Translates to: FSSCGSLYLLYS*SSFFWSTLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTACAAAGACCCACAGGACGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203604.2
CDS CAA 90 bp TCCAATTTTGTTTTCGTCCTGTGGGTCTTTGTACCTGCTGTACAGTaGCTCCAGCTTCTTCTGGTCCACACTGCTCTTCATAGACTCTCG +
Preference number: 6 (lower is better)
Translates to: SNFVFVLWVFVPAVQ*LQLLLVHTALHRLS
Trigger: CGAGAGTCTATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCAACTGTACAGCAGGTACAAAGACCCACAGGACGAAAACAAAATTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000045366.10
ENSMUST00000110838.8
ENSMUST00000110839.10
ENSMUST00000110840.8
ENSMUST00000203604.2
CDS GCA 72 bp CAATTTTGTTTTCGTCCTGTGGGTCTGCTGTACAGTTaGTCCAGCTTCTTCTGGTCCACACTGCTCTTCATA +
Preference number: 6 (lower is better)
Translates to: QFCFRPVGLLYS*SSFFWSTLLFI
Trigger: TATGAAGAGCAGTGTGGACCAGAAGAAGCTGGAGCAACTGTACAGCAGACCCACAGGACGAAAACAAAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203467.3
CDS CAA 90 bp TCATGTTTCCAAAATCTAGGAGAAGGTTCCAAGTATCCCTTGGAATaGATCTTTTGTGATGCTCCTAAGCCCTTCTGCCCAGGGTTCTTA +
Preference number: 6 (lower is better)
Translates to: SCFQNLGEGSKYPLE*IFCDAPKPFCPGFL
Trigger: TAAGAACCCTGGGCAGAAGGGCTTAGGAGCATCACAAAAGATCAATTCCAAGGGATACTTGGAACCTTCTCCTAGATTTTGGAAACATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110838.8