Pregenerated sensors for DCTN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028447Ensembl transcript IDs: ENSMUST00000030158.11, ENSMUST00000171641.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGGGGTTGACAGCTCTCCCCTTCACCTCCCAAATCCTCACAGCTaGGCCCGTCTTACATCAGCAGGCCAACAGGCTCCTTTAGTGGTC | + |
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Preference number: 1 (lower is better) Translates to: QGVDSSPLHLPNPHS*ARLTSAGQQAPLVV Trigger: GACCACTAAAGGAGCCTGTTGGCCTGCTGATGTAAGACGGGCTCAGCTGTGAGGATTTGGGAGGTGAAGGGGAGAGCTGTCAACCCCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| 3UTR-3UTR CAA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCCCTTATAGAGACAGGTaGGTGCGAGGCCCTCGAGCC | + |
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Preference number: 3 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTPYRDR*VRGPRA Trigger: GGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGG...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | CAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGTGGGGTCCCACTGCACAAACTaGTGCTGGATGTGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: QVGARPSSRLPSPGGDVGSHCTN*CWMWIC Trigger: GCAGATCCACATCCAGCAGCAGTTTGTGCAGTGGGA...CCCCACGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | AGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGTCTGCTGGCTTCACTTaGTTGGCAGCCTCTAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RDRLVRGPRAACLPLVGTSAGFT*LAASSW Trigger: CCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGCAGA...CGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTGTCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR TCA 90 bp | AGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGGCTCCTCTGCTAAGATaGACTGCAACTTCGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RDRLVRGPRAACLPLVGTAPLLR*TATSRP Trigger: AGGCCTCGAAGTTGCAGTTCATCTTAGCAGAGGAGC...CGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTGTCTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | GGTCAACCTGACCCTGACCTCAGAGCCGCCAGTCGAACACAGACAGGTAGTATCCGTCAGCCACCTTCCTaGAGCCTCGGGTCCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GQPDPDLRAASRTQTGSIRQPPS*SLGSRP Trigger: CGGGCGGGACCCGAGGCTCCAGGAAGGTGGCTGACG...GATACTACCTGTCTGTGTTCGACTGGCGGCTCTGAGGTCAGGGTCAGGTTGACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | TCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGACGTCAGCCACCTTCCTaGAGCCTCGGGTCCCGCCCG | + |
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Preference number: 4 (lower is better) Translates to: SEMKLSLPYRDRLVRGPRRQPPS*SLGSRP Trigger: CGGGCGGGACCCGAGGCTCCAGGAAGGTGGCTGACG...TCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | AGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGAGTAACTCATCCCACTaGACAAACTGCTTGGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: RDRLVRGPRAACLPLVGTSNSSH*TNCLER Trigger: TCTCTCCAAGCAGTTTGTGCAGTGGGATGAGTTACT...CGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTGTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| 3UTR CAA 72 bp | TCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTaGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: SEMKLSLPYRDR*VRGPRAACLPL Trigger: CAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGAATCTGCGCCAGGCGCTaGAGGCGGGCAGCATGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SEMKLSLPYRDRLVRGPRICARR*RRAACS Trigger: TGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGAT...TCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | ATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCCTGGCTTCACTTGCTTaGCAGCCTCTAGCTGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: MKLSLPYRDRLVRGPRAALASLA*QPLAGR Trigger: TCTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAG...GGCGGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | ATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCTTCCCTAAAGCCACCTaGACCTTGACCAGACCGTCA | + |
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Preference number: 4 (lower is better) Translates to: MKLSLPYRDRLVRGPRAAFPKAT*TLTRPS Trigger: TGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAA...GGCGGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | CCAGTCGAACACAGACAGGTAGTATCTGAATTCAGAGATGAAGCTGTCTCTGCCATCTGCGCCAGGCGCTaGAGGCGGGCAGCATGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PVEHRQVVSEFRDEAVSAICARR*RRAACS Trigger: TGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGAT...GGCAGAGACAGCTTCATCTCTGAATTCAGATACTACCTGTCTGTGTTCGACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR TCA 90 bp | AATTCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTAAGCCACCTGCACCTTaGCCAGACCGTCAGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: NSEMKLSLPYRDRLVRGPKPPAP*PDRQPP Trigger: AGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTT...AGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGATTCCCTAAAGCCACCTaGACCTTGACCAGACCGTCA | + |
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Preference number: 4 (lower is better) Translates to: SEMKLSLPYRDRLVRGPRFPKAT*TLTRPS Trigger: TGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAA...TCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | GGTCAACCTGACCCTGACCTCAGAGCCGCCAGTCGAACACAGACAGGTAGTATCTCCCACTGCACAAACTaGTTGGAGAGAAGCATTGTA | + |
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Preference number: 4 (lower is better) Translates to: GQPDPDLRAASRTQTGSISHCTN*LERSIV Trigger: TACAATGCTTCTCTCCAAGCAGTTTGTGCAGTGGGA...GATACTACCTGTCTGTGTTCGACTGGCGGCTCTGAGGTCAGGGTCAGGTTGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS-3UTR GCA 90 bp | AATTCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTTCTGCTGGCTTCACTTaGTTGGCAGCCTCTAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: NSEMKLSLPYRDRLVRGPSAGFT*LAASSW Trigger: CCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGCAGA...AGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGAATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | AATTCAGAGATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTTGCACAAACTGCTGCTaGATGTGGATCTGCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NSEMKLSLPYRDRLVRGPCTNCC*MWICAR Trigger: CCTGGCGCAGATCCACATCCAGCAGCAGTTTGTGCA...AGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCATCTCTGAATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171641.2 |
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| CDS-3UTR TCA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCCCACCTGGGAGAGGATaGACTGCTCCTCTGCTAAGA | + |
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Preference number: 4 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTPPGRG*TAPLLR Trigger: TCTTAGCAGAGGAGCAGTTCATCCTCTCCCAGGTGG...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGCCGCCAGTCGAACACAGACAGGTAGTATCTGAATTCAGAGATGAAGCTTGCAGGCGGGCAGCATaGTCAGGAACAGCTTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: SEPPVEHRQVVSEFRDEACRRAA*SGTALI Trigger: TATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCA...AGCTTCATCTCTGAATTCAGATACTACCTGTCTGTGTTCGACTGGCGGCTCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR TCA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCGCTCCTCTGCTAAGATaGACTGCAACTTCGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTAPLLR*TATSRP Trigger: AGGCCTCGAAGTTGCAGTTCATCTTAGCAGAGGAGC...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | CCAGTCGAACACAGACAGGTAGTATCTGAATTCAGAGATGAAGCTGTCTCTGCCTGGGAGAGGATGAACTaGTCCTCTGCTAAGATGAAC | + |
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Preference number: 4 (lower is better) Translates to: PVEHRQVVSEFRDEAVSAWERMN*SSAKMN Trigger: GTTCATCTTAGCAGAGGAGCAGTTCATCCTCTCCCA...GGCAGAGACAGCTTCATCTCTGAATTCAGATACTACCTGTCTGTGTTCGACTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCCCCTCTCCCTCTTACTaGCAATGTTCCCTAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTPSPSY*QCSLKP Trigger: TGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAGGG...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR TCA 90 bp | TCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGGAGTACAGATCATAAGCCACCTGCACCTTaGCCAGACCGTCAGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: SFKFIVTGINTLTGSTDHKPPAP*PDRQPP Trigger: AGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTT...ATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCCCTCAGGTATGGCAATaGGATCAATGTACTCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTPQVWQ*DQCTQD Trigger: ATCCTGAGTACATTGATCGCATTGCCATACCTGAGG...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | TCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGGAGTACAGATCATCACTGGTCCTGCTGCTaGATGTGGATCTGCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SFKFIVTGINTLTGSTDHHWSCC*MWICAR Trigger: CCTGGCGCAGATCCACATCCAGCAGCAGGACCAGTG...ATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS-3UTR GCA 90 bp | GCTCCTTTAGTGGTCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGTGCAGGCGGGCAGCATaGTCAGGAACAGCTTTGATA | + |
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Preference number: 4 (lower is better) Translates to: APLVVVQVYCHWNKYIDRCRRAA*SGTALI Trigger: TATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCA...CCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGACCACTAAAGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | GCTCCTTTAGTGGTCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGTCGAGGCCTCAGGTATaGCAATGCGATCAATGTACT | + |
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Preference number: 4 (lower is better) Translates to: APLVVVQVYCHWNKYIDRSRPQV*QCDQCT Trigger: AGTACATTGATCGCATTGCCATACCTGAGGCCTCGA...CCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGACCACTAAAGGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CCA 90 bp | TCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGGAGTACAGATCATCCCTCTCCCTCTTACTaGCAATGTTCCCTAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SFKFIVTGINTLTGSTDHPSPSY*QCSLKP Trigger: TGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAGGG...ATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | TCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGGAGTACAGATCATAGTAACTCATCCCACTaGACAAACTGCTGCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: SFKFIVTGINTLTGSTDHSNSSH*TNCCWM Trigger: CATCCAGCAGCAGTTTGTGCAGTGGGATGAGTTACT...ATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171641.2 |
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| CDS-3UTR GCA 90 bp | TCGTTCAAGTTTATTGTCACTGGAATAAATACATTGACAGGGAGTACAGATCATCCTCAGGTATGGCAATaGGATCAATGTACTCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SFKFIVTGINTLTGSTDHPQVWQ*DQCTQD Trigger: ATCCTGAGTACATTGATCGCATTGCCATACCTGAGG...ATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| 3UTR CAA 72 bp | TGGTCGTTCAAGTTTATTGTCACTGGAATAAATACATaGACAGGGAGTACAGATCATGACTCTAAGGTCAAC | + |
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Preference number: 4 (lower is better) Translates to: WSFKFIVTGINT*TGSTDHDSKVN Trigger: GTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATTTATTCCAGTGACAATAAACTTGAACGACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CAA 90 bp | CAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGTGGGGAAAGCCACCTGCACCTaGACCAGACCGTCAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: QVGARPSSRLPSPGGDVGKATCT*TRPSAT Trigger: GGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTT...CCCCACGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS TCA 90 bp | CCCTCTCCCTCTTACTGGCAATGTTCCCTAAAGCCACCTGCACCTTaGCCAGACCGTCAGCCACCTTCCTGGAGCCTCGGGTCCCGCCCG | + |
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Preference number: 5 (lower is better) Translates to: PSPSYWQCSLKPPAP*PDRQPPSWSLGSRP Trigger: CGGGCGGGACCCGAGGCTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 90 bp | GCCACACACTGGTCCTGCTGCTGGATGTGGATCTGCGCCAGGCGCTaGAGGCGGGCAGCATGCTCAGGAACAGCTTTGATAGAAGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: ATHWSCCWMWICARR*RRAACSGTALIEAL Trigger: CAGCGCTTCTATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGATCCACATCCAGCAGCAGGACCAGTGTGTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS-3UTR CAA 90 bp | CAGGTTGGTGCGAGGCCCTCGAGCCGCCTGCCTTCCCCTGGTGGGGACGTGGGGAGAAGCATTGTAGTCTaGTTATACCCTTCCAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: QVGARPSSRLPSPGGDVGRSIVV*LYPSRR Trigger: TCTCCTGGAAGGGTATAACAAGACTACAATGCTTCT...CCCCACGTCCCCACCAGGGGAAGGCAGGCGGCTCGAGGGCCTCGCACCAACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS-3UTR CAA 90 bp | ATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCCACCAGGGCGTTCACTaGTTCCAGGAGTGCCACCTG | + |
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Preference number: 5 (lower is better) Translates to: MKLSLPYRDRLVRGPRAAHQGVH*FQECHL Trigger: CAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTG...GGCGGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CAA 90 bp | ATGAAGCTGTCTCTGCCTTATAGAGACAGGTTGGTGCGAGGCCCTCGAGCCGCCGCTGGCTTCACTTGCTaGGCAGCCTCTAGCTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: MKLSLPYRDRLVRGPRAAAGFTC*AASSWQ Trigger: CTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGC...GGCGGCTCGAGGGCCTCGCACCAACCTGTCTCTATAAGGCAGAGACAGCTTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 90 bp | ATCTTCACCCTCTCCCTCTTACTGGCAATGTTCCCTAAAGCCACCTaGACCTTGACCAGACCGTCAGCCACCTTCCTGGAGCCTCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: IFTLSLLLAMFPKAT*TLTRPSATFLEPRV Trigger: GACCCGAGGCTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAGGGTGAAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CCA 90 bp | TCCAGCACAGGCACCAGGGCGTTCACTTGTTCCAGGAGTGCCACCTaGGAGAGGATGAACTGCTCCTCTGCTAAGATGAACTGCAACTTC | + |
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Preference number: 5 (lower is better) Translates to: SSTGTRAFTCSRSAT*ERMNCSSAKMNCNF Trigger: GAAGTTGCAGTTCATCTTAGCAGAGGAGCAGTTCATCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTGCCTGTGCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 90 bp | AGGGCGTTCACTTGTTCCAGGAGTGCCACCTGGGAGAGGATGAACTaGTCCTCTGCTAAGATGAACTGCAACTTCGAGGCCTCAGGTATG | + |
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Preference number: 5 (lower is better) Translates to: RAFTCSRSATWERMN*SSAKMNCNFEASGM Trigger: CATACCTGAGGCCTCGAAGTTGCAGTTCATCTTAGCAGAGGAGCAGTTCATCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGCCGCCAGTCGAACACAGACAGGTAGTATCTGAATTCAGAGATGAAGCTAAAGCCACCTGCACCTaGACCAGACCGTCAGCCACC | + |
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Preference number: 5 (lower is better) Translates to: SEPPVEHRQVVSEFRDEAKATCT*TRPSAT Trigger: GGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTT...AGCTTCATCTCTGAATTCAGATACTACCTGTCTGTGTTCGACTGGCGGCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CAA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCCACCAGGGCGTTCACTaGTTCCAGGAGTGCCACCTG | + |
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Preference number: 5 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTHQGVH*FQECHL Trigger: CAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTG...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS-3UTR CAA 90 bp | AATACATTGACAGGGAGTACAGATCATGACTCTAAGGTCAACCTGACCCTGACCGCTGGCTTCACTTGCTaGGCAGCCTCTAGCTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: NTLTGSTDHDSKVNLTLTAGFTC*AASSWQ Trigger: CTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGC...GGTCAGGGTCAGGTTGACCTTAGAGTCATGATCTGTACTCCCTGTCAATGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 90 bp | TTGGCAGCCTCTAGCTGGCAGAGTAACTCATCCCACTGCACAAACTaGTTGGAGAGAAGCATTGTAGTCTTGTTATACCCTTCCAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: LAASSWQSNSSHCTN*LERSIVVLLYPSRR Trigger: TCTCCTGGAAGGGTATAACAAGACTACAATGCTTCTCTCCAAGCAGTTTGTGCAGTGGGATGAGTTACTCTGCCAGCTAGAGGCTGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS CCA 72 bp | TCAGTGATCGCCACACACTGGTCCTGCTGCTGGATGTaGATCTGCGCCAGGCGCTGCAGGCGGGCAGCATGC | + |
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Preference number: 6 (lower is better) Translates to: SVIATHWSCCWM*ICARRCRRAAC Trigger: GCATGCTGCCCGCCTGCAGCGCCTGGCGCAGATCCACATCCAGCAGCAGGACCAGTGTGTGGCGATCACTGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS CAA 72 bp | AGGCGCTGCAGGCGGGCAGCATGCTCAGGAACAGCTTaGATAGAAGCGCTGTCCAGCACAGGCACCAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: RRCRRAACSGTA*IEALSSTGTRA Trigger: CGCCCTGGTGCCTGTGCTGGACAGCGCTTCTATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCAGCGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CAA 90 bp | ACCCTCTCCCTCTTACTGGCAATGTTCCCTAAAGCCACCTGCACCTaGACCAGACCGTCAGCCACCTTCCTGGAGCCTCGGGTCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: TLSLLLAMFPKATCT*TRPSATFLEPRVPP Trigger: GGGCGGGACCCGAGGCTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAGGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CAA 90 bp | ATCTGCGCCAGGCGCTGCAGGCGGGCAGCATGCTCAGGAACAGCTTaGATAGAAGCGCTGTCCAGCACAGGCACCAGGGCGTTCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: ICARRCRRAACSGTA*IEALSSTGTRAFTC Trigger: ACAAGTGAACGCCCTGGTGCCTGTGCTGGACAGCGCTTCTATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 72 bp | ATGTGGATCTGCGCCAGGCGCTGCAGGCGGGCAGCATaGTCAGGAACAGCTTTGATAGAAGCGCTGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: MWICARRCRRAA*SGTALIEALSS Trigger: GCTGGACAGCGCTTCTATCAAAGCTGTTCCTGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGATCCACAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CAA 72 bp | AGAAGCGCTGTCCAGCACAGGCACCAGGGCGTTCACTaGTTCCAGGAGTGCCACCTGGGAGAGGATGAACTG | + |
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Preference number: 6 (lower is better) Translates to: RSAVQHRHQGVH*FQECHLGEDEL Trigger: CAGTTCATCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTGCCTGTGCTGGACAGCGCTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CAA 90 bp | AGCTTTGATAGAAGCGCTGTCCAGCACAGGCACCAGGGCGTTCACTaGTTCCAGGAGTGCCACCTGGGAGAGGATGAACTGCTCCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SFDRSAVQHRHQGVH*FQECHLGEDELLLC Trigger: GCAGAGGAGCAGTTCATCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTGCCTGTGCTGGACAGCGCTTCTATCAAAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS TCA 72 bp | TCTTACTGGCAATGTTCCCTAAAGCCACCTGCACCTTaGCCAGACCGTCAGCCACCTTCCTGGAGCCTCGGG | + |
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Preference number: 6 (lower is better) Translates to: SYWQCSLKPPAP*PDRQPPSWSLG Trigger: CCCGAGGCTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACATTGCCAGTAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 72 bp | CTCTCCCTCTTACTGGCAATGTTCCCTAAAGCCACCTaGACCTTGACCAGACCGTCAGCCACCTTCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LSLLLAMFPKAT*TLTRPSATFLE Trigger: CTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACATTGCCAGTAAGAGGGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CCA 72 bp | GGCACCAGGGCGTTCACTTGTTCCAGGAGTGCCACCTaGGAGAGGATGAACTGCTCCTCTGCTAAGATGAAC | + |
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Preference number: 6 (lower is better) Translates to: GTRAFTCSRSAT*ERMNCSSAKMN Trigger: GTTCATCTTAGCAGAGGAGCAGTTCATCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS CCA 72 bp | TCCTCTGCTGGCTTCACTTGCTTGGCAGCCTCTAGCTaGCAGAGTAACTCATCCCACTGCACAAACTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SSAGFTCLAASS*QSNSSHCTNCC Trigger: GCAGCAGTTTGTGCAGTGGGATGAGTTACTCTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGCAGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171641.2 |
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| CDS CCA 72 bp | TCCTCTGCTGGCTTCACTTGCTTGGCAGCCTCTAGCTaGCAGAGTAACTCATCCCACTGCACAAACTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSAGFTCLAASS*QSNSSHCTNCL Trigger: CAAGCAGTTTGTGCAGTGGGATGAGTTACTCTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGCAGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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| CDS GCA 72 bp | TGGGAGAGGATGAACTGCTCCTCTGCTAAGATGAACTaGAACTTCGAGGCCTCAGGTATGGCAATGCGATCA | + |
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Preference number: 6 (lower is better) Translates to: WERMNCSSAKMN*NFEASGMAMRS Trigger: TGATCGCATTGCCATACCTGAGGCCTCGAAGTTGCAGTTCATCTTAGCAGAGGAGCAGTTCATCCTCTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030158.11 ENSMUST00000171641.2 |
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| CDS GCA 72 bp | TCTAGCTGGCAGAGTAACTCATCCCACTGCACAAACTaGTTGGAGAGAAGCATTGTAGTCTTGTTATACCCT | + |
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Preference number: 6 (lower is better) Translates to: SSWQSNSSHCTN*LERSIVVLLYP Trigger: AGGGTATAACAAGACTACAATGCTTCTCTCCAAGCAGTTTGTGCAGTGGGATGAGTTACTCTGCCAGCTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030158.11 |
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