RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DCP1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021962

Ensembl transcript IDs: ENSMUST00000022535.9, ENSMUST00000223658.2, ENSMUST00000225196.2, ENSMUST00000225286.2

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGTGCCACGAGGACACAGGACGACGCAGGCTGTGACCCCTCAGTaGCTGACTCGCAGGGTCCTCCTGTGCCCGTGCCCTTCCTTCTCT +
Preference number: 1 (lower is better)
Translates to: GVPRGHRTTQAVTPQ*LTRRVLLCPCPSFS
Trigger: AGAGAAGGAAGGGCACGGGCACAGGAGGACCCTGCGAGTCAGGCACTGAGGGGTCACAGCCTGCGTCGTCCTGTGTCCTCGTGGCACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp GCTCCACTGAGCTCTGCTGCAAGGCTGGTGGCTCCTCCCGAGGCCTaGAAAGCAAGCCGGCAGTCAGGCTCCTCATTCCACCCACTGGCT +
Preference number: 1 (lower is better)
Translates to: APLSSAARLVAPPEA*KASRQSGSSFHPLA
Trigger: AGCCAGTGGGTGGAATGAGGAGCCTGACTGCCGGCTTGCTTTCCAGGCCTCGGGAGGAGCCACCAGCCTTGCAGCAGAGCTCAGTGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp GTGCCAGCTGGGTTTGCTAGGCTCACCGGGGCTCTGAAGGGGCTCTaGCTAGCAACCAGACTGCTGTGGCTTAGCTCAGGGACTGGCTGG +
Preference number: 1 (lower is better)
Translates to: VPAGFARLTGALKGL*LATRLLWLSSGTGW
Trigger: CCAGCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGCCCCGGTGAGCCTAGCAAACCCAGCTGGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR TCA 90 bp GGTAGGATCTGGATCTGTGTGGCCCCGGCCTCTGCTTCAAGGGTGTaGAGCCTCCTCCATCAGAGCCCAGCCGGCCTATCCCAAGAGCTG +
Preference number: 1 (lower is better)
Translates to: GRIWICVAPASASRV*SLLHQSPAGLSQEL
Trigger: CAGCTCTTGGGATAGGCCGGCTGGGCTCTGATGGAGGAGGCTTCACACCCTTGAAGCAGAGGCCGGGGCCACACAGATCCAGATCCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp CCCACAGGCTCCTGGAGGCCCTGGTCCTCATGGAAACTCTCCTCGTaGGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGG +
Preference number: 1 (lower is better)
Translates to: PTGSWRPWSSWKLSS*VAFKAHCKVLCSDR
Trigger: CCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGGGCCTCCAGGAGCCTGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp GGCAACAGCGCTGACTCTCAGGCCAGACTCATCCAACCGCACCTATaGTCAGGCTTGGCCCAGCTATCTGGGGACTCATTCTGGCCTAGC +
Preference number: 1 (lower is better)
Translates to: GNSADSQARLIQPHL*SGLAQLSGDSFWPS
Trigger: GCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCATAGGTGCGGTTGGATGAGTCTGGCCTGAGAGTCAGCGCTGTTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 90 bp CAGGCTCCTGGAGGCCCTGGTCCTCATGGAAACTCTCCTCGTGAGTaGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCA +
Preference number: 1 (lower is better)
Translates to: QAPGGPGPHGNSPRE*PSKPTVRCSAQTGA
Trigger: TGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGGGCCTCCAGGAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp TGGCAGAGTGGGGCTGAGGACAGGGCTCAGTGGGAGTGTGTAGCTTaGGGGATGTTTGTCACCCGACTGTGCAATGGAGGCGGGAGTGAT +
Preference number: 1 (lower is better)
Translates to: WQSGAEDRAQWECVA*GMFVTRLCNGGGSD
Trigger: ATCACTCCCGCCTCCATTGCACAGTCGGGTGACAAACATCCCCCAAGCTACACACTCCCACTGAGCCCTGTCCTCAGCCCCACTCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR GCA 90 bp CAGAGCCCAGCCGGCCTATCCCAAGAGCTGTGCTTCACCGGAGTTTaGACAGGGCAGGACCAGGGACACTTACCGGAACACAAAGACATC +
Preference number: 1 (lower is better)
Translates to: QSPAGLSQELCFTGV*TGQDQGHLPEHKDI
Trigger: GATGTCTTTGTGTTCCGGTAAGTGTCCCTGGTCCTGCCCTGTGCAAACTCCGGTGAAGCACAGCTCTTGGGATAGGCCGGCTGGGCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp AGACCACACTTGGGGGTGATCAAGCCGACAGGCACGTTCACTTTATaGGAACAGCCCTGTGGCTCCCTGACCACCACCTCCTACTGTCAG +
Preference number: 1 (lower is better)
Translates to: RPHLGVIKPTGTFTL*EQPCGSLTTTSYCQ
Trigger: CTGACAGTAGGAGGTGGTGGTCAGGGAGCCACAGGGCTGTTCTCATAAAGTGAACGTGCCTGTCGGCTTGATCACCCCCAAGTGTGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp AGGTATCTAAGCCAAGCCTGGGCTAAGGCCTTGACGGGTTTGGAATaGACATCACTGTCCAGGGCTAGCTGTGGACAGTCCGGACGGAGC +
Preference number: 1 (lower is better)
Translates to: RYLSQAWAKALTGLE*TSLSRASCGQSGRS
Trigger: GCTCCGTCCGGACTGTCCACAGCTAGCCCTGGACAGTGATGTTCATTCCAAACCCGTCAAGGCCTTAGCCCAGGCTTGGCTTAGATACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 90 bp CTGCATGACAAACTCTGGGCTGCTCTTCCCAGACCCTTTGACCACTaGGGTGAGGGGGTGGGGTGTGTATACAGATGGACCAAATGGCCT +
Preference number: 1 (lower is better)
Translates to: LHDKLWAALPRPFDH*GEGVGCVYRWTKWP
Trigger: AGGCCATTTGGTCCATCTGTATACACACCCCACCCCCTCACCCCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 90 bp GAGGGGCTCCCCCTGACTGCTCAAAGGGAAATGGGAGGAATGAGCTaGGCTCTTTCTGTGATGCATCTCCCAGCAGCTTGTCTGTGTCCT +
Preference number: 1 (lower is better)
Translates to: EGLPLTAQREMGGMS*ALSVMHLPAACLCP
Trigger: AGGACACAGACAAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCATTTCCCTTTGAGCAGTCAGGGGGAGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 90 bp CTCTGGCTAGCAACCAGACTGCTGTGGCTTAGCTCAGGGACTGGCTaGTTCAGGAGTGGAGATTTCTGCCTGGGTGTGGTCTTTACTGCT +
Preference number: 1 (lower is better)
Translates to: LWLATRLLWLSSGTG*FRSGDFCLGVVFTA
Trigger: AGCAGTAAAGACCACACCCAGGCAGAAATCTCCACTCCTGAACCAGCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGCTAGCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 90 bp AGGCCTGGAAAGCAAGCCGGCAGTCAGGCTCCTCATTCCACCCACTaGCTTGTAGCTGATGAAAACACCCACGTCACTCAACACAATGGT +
Preference number: 1 (lower is better)
Translates to: RPGKQAGSQAPHSTH*LVADENTHVTQHNG
Trigger: ACCATTGTGTTGAGTGACGTGGGTGTTTTCATCAGCTACAAGCCAGTGGGTGGAATGAGGAGCCTGACTGCCGGCTTGCTTTCCAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp CCGCACCTATGGTCAGGCTTGGCCCAGCTATCTGGGGACTCATTCTaGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTG +
Preference number: 1 (lower is better)
Translates to: PHLWSGLAQLSGDSF*PSFLEVMIWNFWLL
Trigger: CAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCATAGGTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp AGCCGACAGGCACGTTCACTTTATGAGAACAGCCCTGTGGCTCCCTaGCCACCACCTCCTACTGTCAGCAACATTCATCACCTCACTATG +
Preference number: 1 (lower is better)
Translates to: SRQARSLYENSPVAP*PPPPTVSNIHHLTM
Trigger: CATAGTGAGGTGATGAATGTTGCTGACAGTAGGAGGTGGTGGTCAGGGAGCCACAGGGCTGTTCTCATAAAGTGAACGTGCCTGTCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp GCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTaGACAGGGCGGGCAATGCTGGTACTGAAGAACAACAAAGTCAGG +
Preference number: 1 (lower is better)
Translates to: AHCKVLCSDRSILDS*TGRAMLVLKNNKVR
Trigger: CCTGACTTTGTTGTTCTTCAGTACCAGCATTGCCCGCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 90 bp GGTGTGGTCTTTACTGCTTGTATCATGGTGCTATTCCGAGGTAAGTaGGGAACTTGTGTGGTAGGAGCTTCAGCTGGCAGAGTGGGGCTG +
Preference number: 1 (lower is better)
Translates to: GVVFTACIMVLFRGK*GTCVVGASAGRVGL
Trigger: CAGCCCCACTCTGCCAGCTGAAGCTCCTACCACACAAGTTCCCCACTTACCTCGGAATAGCACCATGATACAAGCAGTAAAGACCACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 90 bp GCTCAGGGACTGGCTGGTTCAGGAGTGGAGATTTCTGCCTGGGTGTaGTCTTTACTGCTTGTATCATGGTGCTATTCCGAGGTAAGTGGG +
Preference number: 1 (lower is better)
Translates to: AQGLAGSGVEISAWV*SLLLVSWCYSEVSG
Trigger: CCCACTTACCTCGGAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACTCCTGAACCAGCCAGTCCCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR TCA 90 bp AACATGCAAGCTAGGCTAGCTAGCAGCGGGTCTGGACAATATGCCTaGATGAGGAATAAGGCAACAGCGCTGACTCTCAGGCCAGACTCA +
Preference number: 1 (lower is better)
Translates to: NMQARLASSGSGQYA*MRNKATALTLRPDS
Trigger: TGAGTCTGGCCTGAGAGTCAGCGCTGTTGCCTTATTCCTCATTCAGGCATATTGTCCAGACCCGCTGCTAGCTAGCCTAGCTTGCATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp ACCGGAGCATTCTGGATTCTTGAACAGGGCGGGCAATGCTGGTACTaGAGAACAACAAAGTCAGGCAGGAAGAGACACATGGTCCTCAGT +
Preference number: 1 (lower is better)
Translates to: TGAFWILEQGGQCWY*RTTKSGRKRHMVLS
Trigger: ACTGAGGACCATGTGTCTCTTCCTGCCTGACTTTGTTGTTCTTCAGTACCAGCATTGCCCGCCCTGTTCAAGAATCCAGAATGCTCCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR GCA 90 bp ATTGAGTTCCCATTAAAGCTTAAGCAACTGTCCCGGCGGGACCGCTaGGTCTGTCAGCATTATTCACAGCGAATCCTTACGCTAGCTGGT +
Preference number: 1 (lower is better)
Translates to: IEFPLKLKQLSRRDR*VCQHYSQRILTLAG
Trigger: ACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAGTTGCTTAAGCTTTAATGGGAACTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp CTTCAAGTCTCCATCCCTTCGGCACCCAGAAGTTTGTATCTACACTaGGGAAGCCTTCCTTCTCGGAGGTTCTCCTGCTTATCACAGTCA +
Preference number: 1 (lower is better)
Translates to: LQVSIPSAPRSLYLH*GSLPSRRFSCLSQS
Trigger: TGACTGTGATAAGCAGGAGAACCTCCGAGAAGGAAGGCTTCCTCAGTGTAGATACAAACTTCTGGGTGCCGAAGGGATGGAGACTTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp GTGCTTGGCTGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTaGTTCTCTGGTCCTCATGCTTGTACAGCAAGCTCTTTTATAAAC +
Preference number: 1 (lower is better)
Translates to: VLGCSPGLEIFEPPI*FSGPHACTASSFIN
Trigger: GTTTATAAAAGAGCTTGCTGTACAAGCATGAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGCCAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 90 bp CCGCTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGCTAGCTaGTTGAGCCAACTGGGTTCTTACCCATCATTAAATAGTGCTCAG +
Preference number: 1 (lower is better)
Translates to: PLRLSALFTANPYAS*LSQLGSYPSLNSAQ
Trigger: CTGAGCACTATTTAATGATGGGTAAGAACCCAGTTGGCTCAACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp CTTCTCTTCCCTCTGAGTTGCAGTATGATGGCCGACTCCGCTGTATaGGCAGGTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTA +
Preference number: 1 (lower is better)
Translates to: LLFPLSCSMMADSAV*AGRHLEFHVALSVL
Trigger: TAACACTGATAATGCAACATGAAACTCAAGGTGCCTACCTGCTCATACAGCGGAGTCGGCCATCATACTGCAACTCAGAGGGAAGAGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 90 bp TTTGGCAAGGAGGTTCCAAATAACTCTTCTACTGTCAGATGTTTATaGCCAGACGGAGCAGACTTATCCTGTGACCCAGAGGGTGTCTCT +
Preference number: 1 (lower is better)
Translates to: FGKEVPNNSSTVRCL*PDGADLSCDPEGVS
Trigger: AGAGACACCCTCTGGGTCACAGGATAAGTCTGCTCCGTCTGGTCATAAACATCTGACAGTAGAAGAGTTATTTGGAACCTCCTTGCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 90 bp GCTCCCTTTCTGCATAGCTTTAAACTGCTCAGCACATTTGAGGAATaGAACCAGAATGGCTTTGTCAGAATGGTCCACTGGTCCTTTTGC +
Preference number: 1 (lower is better)
Translates to: APFLHSFKLLSTFEE*NQNGFVRMVHWSFC
Trigger: GCAAAAGGACCAGTGGACCATTCTGACAAAGCCATTCTGGTTCCATTCCTCAAATGTGCTGAGCAGTTTAAAGCTATGCAGAAAGGGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 90 bp GCAGGTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATaGCAGTTACGGCCTCTACTACGGAACACAAAGACATCCCAGAAG +
Preference number: 1 (lower is better)
Translates to: AGRHLEFHVALSVLQ*QLRPLLRNTKTSQK
Trigger: CTTCTGGGATGTCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTACCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
3UTR TCA 90 bp CAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTaGTGCTGCACAGTGAAACCTCCATCATCACTGAGAACGTCTCTA +
Preference number: 1 (lower is better)
Translates to: QHNGLLLFCQTKVCW*CCTVKPPSSLRTSL
Trigger: TAGAGACGTTCTCAGTGATGATGGAGGTTTCACTGTGCAGCATCACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 90 bp CACTCTTCACCCTCACATAACACTACACACACTCAAAAGCATCAGTaGGATTCATACCTATGGAGAAGACGCTTTCAATCATCTGTTTAC +
Preference number: 1 (lower is better)
Translates to: HSSPSHNTTHTQKHQ*DSYLWRRRFQSSVY
Trigger: GTAAACAGATGATTGAAAGCGTCTTCTCCATAGGTATGAATCTCACTGATGCTTTTGAGTGTGTGTAGTGTTATGTGAGGGTGAAGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 90 bp ATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACTaGAATGAGAAAATTTCAAACGACATTCTTTGGGGGAAGAGAGCA +
Preference number: 1 (lower is better)
Translates to: MLHYQCYNGSYGLYY*NEKISNDILWGKRA
Trigger: TGCTCTCTTCCCCCAAAGAATGTCGTTTGAAATTTTCTCATTTCAGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR TCA 90 bp ACAACGCTGCATGACAAACTCTGGGCTGCTCTTCCCAGACCCTTTGACCACTGGGGGCGTGGGCTCCACTaGGCTCTGCTGCAAGGCTGG +
Preference number: 2 (lower is better)
Translates to: TTLHDKLWAALPRPFDHWGRGLH*ALLQGW
Trigger: CCAGCCTTGCAGCAGAGCTCAGTGGAGCCCACGCCC...CCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAGCGTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR TCA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCGGGCGTGGGCTCCACTaGGCTCTGCTGCAAGGCTGG +
Preference number: 2 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGGRGLH*ALLQGW
Trigger: CCAGCCTTGCAGCAGAGCTCAGTGGAGCCCACGCCC...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CAA 90 bp TCAGAGCCCAGCCGGCCTATCCCAAGAGCTGTGCTTCACCGGAGTTaGCACAGGGCAGGACCAGGGACACTTACCGGAACACAAAGACAT +
Preference number: 2 (lower is better)
Translates to: SEPSRPIPRAVLHRS*HRAGPGTLTGTQRH
Trigger: ATGTCTTTGTGTTCCGGTAAGTGTCCCTGGTCCTGCCCTGTGCAAACTCCGGTGAAGCACAGCTCTTGGGATAGGCCGGCTGGGCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR GCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTCCACTGAGCTCTGCTaGAAGGCTGGTGGCTCCTCC +
Preference number: 2 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRSTELC*KAGGSS
Trigger: GGAGGAGCCACCAGCCTTGCAGCAGAGCTCAGTGGA...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR GCA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGGCTCCACTGAGCTCTaGTGCAAGGCTGGTGGCTCC +
Preference number: 2 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSGSTEL*CKAGGS
Trigger: GGAGCCACCAGCCTTGCAGCAGAGCTCAGTGGAGCC...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR GCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGTGGCCCCGGCCTCTaGTTCAAGGGTGTGAAGCCT +
Preference number: 2 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRCGPGL*FKGVKP
Trigger: AGGCTTCACACCCTTGAAGCAGAGGCCGGGGCCACA...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CAA 90 bp GCTGACTCTCAGGCCAGACTCATCCAACCGCACCTATGGTCAGGCTaGGCCCAGCTATCTGGGGACTCATTCTGGCCTAGCTTCCTAGAA +
Preference number: 2 (lower is better)
Translates to: ADSQARLIQPHLWSG*AQLSGDSFWPSFLE
Trigger: TTCTAGGAAGCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCATAGGTGCGGTTGGATGAGTCTGGCCTGAGAGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR CCA 90 bp TCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACTGCTGCAAGGCTGGTaGCTCCTCCCGAGGCCTGGA +
Preference number: 2 (lower is better)
Translates to: SKPTVRCSAQTGAFWILELLQGW*LLPRPG
Trigger: TCCAGGCCTCGGGAGGAGCCACCAGCCTTGCAGCAG...TTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CCA 90 bp GATCAGCACTGGGGTGCTGACTTCAGGCTGAACTGTGTGGTGAGCGGCAGAATGGCTGTAGCCCAGGACTaGAGATATTTGAGCCGCCCA +
Preference number: 2 (lower is better)
Translates to: DQHWGADFRLNCVVSGRMAVAQD*RYLSRP
Trigger: TGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC...CATTCTGCCGCTCACCACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CCA 90 bp CGACTGTGCAATGGAGGCGGGAGTGATCAGCACTGGGGTGCTGACTTCAGGCTGATGGGAGGAATGAGCTaGGCTCTTTCTGTGATGCAT +
Preference number: 2 (lower is better)
Translates to: RLCNGGGSDQHWGADFRLMGGMS*ALSVMH
Trigger: ATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCAT...CAGCCTGAAGTCAGCACCCCAGTGCTGATCACTCCCGCCTCCATTGCACAGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CAA 90 bp GGGAGGAATGAGCTGGGCTCTTTCTGTGATGCATCTCCCAGCAGCTaGTCTGTGTCCTCTGACTCTAGACCCATAGCTGTTGGTTGTTCC +
Preference number: 2 (lower is better)
Translates to: GRNELGSFCDASPSS*SVSSDSRPIAVGCS
Trigger: GGAACAACCAACAGCTATGGGTCTAGAGTCAGAGGACACAGACAAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR TCA 90 bp AGTGGAGATTTCTGCCTGGGTGTGGTCTTTACTGCTTGTATCATGGTGCTATTCCTGAGGGGCTCCCCCTaGCTGCTCAAAGGGAAATGG +
Preference number: 2 (lower is better)
Translates to: SGDFCLGVVFTACIMVLFLRGSP*LLKGKW
Trigger: CCATTTCCCTTTGAGCAGTCAGGGGGAGCCCCTCAG...GAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCAGAGGAGGGAGGGCGTaGGCTCCACTGAGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGRGGRA*APLSSA
Trigger: AGCAGAGCTCAGTGGAGCCCACGCCCTCCCTCCTCT...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CAA 90 bp TGGCCGACTCCGCTGTATGAGCAGGTAGGCACCTTGAGTTTCATGTaGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACGGA +
Preference number: 2 (lower is better)
Translates to: WPTPLYEQVGTLSFM*HYQCYNGSYGLYYG
Trigger: TCCGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTACCTGCTCATACAGCGGAGTCGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
3UTR-3UTR GCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCTGCTTCACCGGAGTTTaGACAGGGCAGGACCAGGGA +
Preference number: 2 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGCFTGV*TGQDQG
Trigger: TCCCTGGTCCTGCCCTGTGCAAACTCCGGTGAAGCA...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR CCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACCTGCTGCAAGGCTGGTaGCTCCTCCCGAGGCCTGGA +
Preference number: 2 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNLLQGW*LLPRPG
Trigger: TCCAGGCCTCGGGAGGAGCCACCAGCCTTGCAGCAG...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR TCA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTGCTTAGCTGTTCCATaGGGAAGCCTGCGTGTCTTG +
Preference number: 2 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLCLAVP*GSLRVL
Trigger: CAAGACACGCAGGCTTCCTCATGGAACAGCTAAGCA...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR TCA 90 bp CTGTCAGCATTATTCACAGCGAATCCTTACGCTAGCTGGTTGAGCCAACTGGGTACAAAGGTTTGCTGGTaGTGCTGCACAGTGAAACCT +
Preference number: 2 (lower is better)
Translates to: LSALFTANPYASWLSQLGTKVCW*CCTVKP
Trigger: AGGTTTCACTGTGCAGCATCACCAGCAAACCTTTGT...ACCCAGTTGGCTCAACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR TCA 90 bp TCATTCTGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATGGCACGTTCACTTTATaGGAACAGCCCTGTGGCTCC +
Preference number: 2 (lower is better)
Translates to: SFWPSFLEVMIWNFWLLNGTFTL*EQPCGS
Trigger: GGAGCCACAGGGCTGTTCTCATAAAGTGAACGTGCC...ATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCAGAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR TCA 90 bp AGTGGAGATTTCTGCCTGGGTGTGGTCTTTACTGCTTGTATCATGGTGCTATTCAGGACTGGAGATATTTaGGCCGCCCATCTGATTCTC +
Preference number: 2 (lower is better)
Translates to: SGDFCLGVVFTACIMVLFRTGDI*AAHLIL
Trigger: GAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCT...GAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CCA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTCTAGAAGTCATGATCTaGAACTTCTGGCTTCTGAAT +
Preference number: 2 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSLEVMI*NFWLLN
Trigger: ATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAG...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CAA 90 bp CTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGCTAGCTGGTaGAGCCAACTGGGTTCTTACCCATCATTAAATAGTGCTCAGAAA +
Preference number: 2 (lower is better)
Translates to: LRLSALFTANPYASW*SQLGSYPSLNSAQK
Trigger: TTTCTGAGCACTATTTAATGATGGGTAAGAACCCAGTTGGCTCAACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR GCA 90 bp AAACAGGTTTACCCACTTCAAGTCTCCATCCCTTCGGCACCCAGAAGTTTGTATGTCCACTGGTCCTTTTaGCAAAGTGTTAAGGAAAAC +
Preference number: 2 (lower is better)
Translates to: KQVYPLQVSIPSAPRSLYVHWSF*QSVKEN
Trigger: GTTTTCCTTAACACTTTGGCAAAAGGACCAGTGGAC...ATACAAACTTCTGGGTGCCGAAGGGATGGAGACTTGAAGTGGGTAAACCTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR CCA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGAGCACATTTGAGGAATaGAACCAGAATGGCTTTGTC +
Preference number: 2 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKSTFEE*NQNGFV
Trigger: GACAAAGCCATTCTGGTTCCATTCCTCAAATGTGCT...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR GCA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGTGCATAGCTTTAAACTaGTCAGCACATTTGAGGAAT +
Preference number: 2 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRCIALN*SAHLRN
Trigger: ATTCCTCAAATGTGCTGAGCAGTTTAAAGCTATGCA...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp CTTCTAGGAGTAGAGGAGGGAGGGCGTGGGCTCCACTaGGCTCTGCTGCAAGGCTGGTGGCTCCTCCCGAGG +
Preference number: 3 (lower is better)
Translates to: LLGVEEGGRGLH*ALLQGWWLLPR
Trigger: CCTCGGGAGGAGCCACCAGCCTTGCAGCAGAGCTCAGTGGAGCCCACGCCCTCCCTCCTCTACTCCTAGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 72 bp TGGATCTGTGTGGCCCCGGCCTCTGCTTCAAGGGTGTaGAGCCTCCTCCATCAGAGCCCAGCCGGCCTATCC +
Preference number: 3 (lower is better)
Translates to: WICVAPASASRV*SLLHQSPAGLS
Trigger: GGATAGGCCGGCTGGGCTCTGATGGAGGAGGCTTCACACCCTTGAAGCAGAGGCCGGGGCCACACAGATCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp AGCTCTGCTGCAAGGCTGGTGGCTCCTCCCGAGGCCTaGAAAGCAAGCCGGCAGTCAGGCTCCTCATTCCAC +
Preference number: 3 (lower is better)
Translates to: SSAARLVAPPEA*KASRQSGSSFH
Trigger: GTGGAATGAGGAGCCTGACTGCCGGCTTGCTTTCCAGGCCTCGGGAGGAGCCACCAGCCTTGCAGCAGAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR GCA 72 bp CTCCATCAGAGCCCAGCCGGCCTATCCCAAGAGCTGTaGTTCACCGGAGTTTGCACAGGGCAGGACCAGGGA +
Preference number: 3 (lower is better)
Translates to: LHQSPAGLSQEL*FTGVCTGQDQG
Trigger: TCCCTGGTCCTGCCCTGTGCAAACTCCGGTGAAGCACAGCTCTTGGGATAGGCCGGCTGGGCTCTGATGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp GGGTTTGCTAGGCTCACCGGGGCTCTGAAGGGGCTCTaGCTAGCAACCAGACTGCTGTGGCTTAGCTCAGGG +
Preference number: 3 (lower is better)
Translates to: GFARLTGALKGL*LATRLLWLSSG
Trigger: CCCTGAGCTAAGCCACAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGCCCCGGTGAGCCTAGCAAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR GCA 72 bp GCCGGCCTATCCCAAGAGCTGTGCTTCACCGGAGTTTaGACAGGGCAGGACCAGGGACACTTACCGGAACAC +
Preference number: 3 (lower is better)
Translates to: AGLSQELCFTGV*TGQDQGHLPEH
Trigger: GTGTTCCGGTAAGTGTCCCTGGTCCTGCCCTGTGCAAACTCCGGTGAAGCACAGCTCTTGGGATAGGCCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp GGGGCTGAGGACAGGGCTCAGTGGGAGTGTGTAGCTTaGGGGATGTTTGTCACCCGACTGTGCAATGGAGGC +
Preference number: 3 (lower is better)
Translates to: GAEDRAQWECVA*GMFVTRLCNGG
Trigger: GCCTCCATTGCACAGTCGGGTGACAAACATCCCCCAAGCTACACACTCCCACTGAGCCCTGTCCTCAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 72 bp GCTCTGAAGGGGCTCTGGCTAGCAACCAGACTGCTGTaGCTTAGCTCAGGGACTGGCTGGTTCAGGAGTGGA +
Preference number: 3 (lower is better)
Translates to: ALKGLWLATRLL*LSSGTGWFRSG
Trigger: TCCACTCCTGAACCAGCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CAA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTCTCTTCCCAGACCCTTaGACCACTGGGGTGAGGGGG +
Preference number: 3 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSLFPDP*TTGVRG
Trigger: CCCCCTCACCCCAGTGGTCAAAGGGTCTGGGAAGAG...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp TTGGGGGTGATCAAGCCGACAGGCACGTTCACTTTATaGGAACAGCCCTGTGGCTCCCTGACCACCACCTCC +
Preference number: 3 (lower is better)
Translates to: LGVIKPTGTFTL*EQPCGSLTTTS
Trigger: GGAGGTGGTGGTCAGGGAGCCACAGGGCTGTTCTCATAAAGTGAACGTGCCTGTCGGCTTGATCACCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp TCCTGGAGGCCCTGGTCCTCATGGAAACTCTCCTCGTaGGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGC +
Preference number: 3 (lower is better)
Translates to: SWRPWSSWKLSS*VAFKAHCKVLC
Trigger: GCAGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGGGCCTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 72 bp AGGCCAGACTCATCCAACCGCACCTATGGTCAGGCTTaGCCCAGCTATCTGGGGACTCATTCTGGCCTAGCT +
Preference number: 3 (lower is better)
Translates to: RPDSSNRTYGQA*PSYLGTHSGLA
Trigger: AGCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCATAGGTGCGGTTGGATGAGTCTGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp AAACTCTGGGCTGCTCTTCCCAGACCCTTTGACCACTaGGGTGAGGGGGTGGGGTGTGTATACAGATGGACC +
Preference number: 3 (lower is better)
Translates to: KLWAALPRPFDH*GEGVGCVYRWT
Trigger: GGTCCATCTGTATACACACCCCACCCCCTCACCCCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp GGAGGCCCTGGTCCTCATGGAAACTCTCCTCGTGAGTaGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAG +
Preference number: 3 (lower is better)
Translates to: GGPGPHGNSPRE*PSKPTVRCSAQ
Trigger: CTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGGGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp GAACATCACTGTCCAGGGCTAGCTGTGGACAGTCCGGACGGAGCCTGCAGGGTAGGAACCAGAATGGCTTaGTCAGAATGGTCCACTGGT +
Preference number: 3 (lower is better)
Translates to: EHHCPGLAVDSPDGACRVGTRMA*SEWSTG
Trigger: ACCAGTGGACCATTCTGACAAAGCCATTCTGGTTCC...TACCCTGCAGGCTCCGTCCGGACTGTCCACAGCTAGCCCTGGACAGTGATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp AGCCAAGCCTGGGCTAAGGCCTTGACGGGTTTGGAATaGACATCACTGTCCAGGGCTAGCTGTGGACAGTCC +
Preference number: 3 (lower is better)
Translates to: SQAWAKALTGLE*TSLSRASCGQS
Trigger: GGACTGTCCACAGCTAGCCCTGGACAGTGATGTTCATTCCAAACCCGTCAAGGCCTTAGCCCAGGCTTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR GCA 72 bp GAGCAGTGTCACTCATCGGTGACACCCAGACAACGCTaGATGACAAACTCTGGGCTGCTCTTCCCAGACCCT +
Preference number: 3 (lower is better)
Translates to: EQCHSSVTPRQR*MTNSGLLFPDP
Trigger: AGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAGCGTTGTCTGGGTGTCACCGATGAGTGACACTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp ACATTAAGTTCTTCTAGGAGTAGAGGAGGGAGGGCGTaGGCTCCACTGAGCTCTGCTGCAAGGCTGGTGGCT +
Preference number: 3 (lower is better)
Translates to: TLSSSRSRGGRA*APLSSAARLVA
Trigger: AGCCACCAGCCTTGCAGCAGAGCTCAGTGGAGCCCACGCCCTCCCTCCTCTACTCCTAGAAGAACTTAATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 72 bp CTAAAATGGAGCCTTCTGGTAGGATCTGGATCTGTGTaGCCCCGGCCTCTGCTTCAAGGGTGTGAAGCCTCC +
Preference number: 3 (lower is better)
Translates to: LKWSLLVGSGSV*PRPLLQGCEAS
Trigger: GGAGGCTTCACACCCTTGAAGCAGAGGCCGGGGCCACACAGATCCAGATCCTACCAGAAGGCTCCATTTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp ATCGGTGACACCCAGACAACGCTGCATGACAAACTCTaGGCTGCTCTTCCCAGACCCTTTGACCACTGGGGT +
Preference number: 3 (lower is better)
Translates to: IGDTQTTLHDKL*AALPRPFDHWG
Trigger: ACCCCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAGCGTTGTCTGGGTGTCACCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp CTCTTCCCAGACCCTTTGACCACTGGGGTGAGGGGGTaGGGTGTGTATACAGATGGACCAAATGGCCTGATA +
Preference number: 3 (lower is better)
Translates to: LFPDPLTTGVRG*GVYTDGPNGLI
Trigger: TATCAGGCCATTTGGTCCATCTGTATACACACCCCACCCCCTCACCCCAGTGGTCAAAGGGTCTGGGAAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp AAGCAAGCCGGCAGTCAGGCTCCTCATTCCACCCACTaGCTTGTAGCTGATGAAAACACCCACGTCACTCAA +
Preference number: 3 (lower is better)
Translates to: KQAGSQAPHSTH*LVADENTHVTQ
Trigger: TTGAGTGACGTGGGTGTTTTCATCAGCTACAAGCCAGTGGGTGGAATGAGGAGCCTGACTGCCGGCTTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTTCTCTTCCCTCTGAGTaGCAGTATGATGGCCGACTC +
Preference number: 3 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSSLPSE*QYDGRL
Trigger: GAGTCGGCCATCATACTGCAACTCAGAGGGAAGAGA...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp CCAGACGGAGCAGACTTATCCTGTGACCCAGAGGGTGTCTCTTCTAGAGTCTCGCAGGACTGGAGATATTaGAGCCGCCCATCTGATTCT +
Preference number: 3 (lower is better)
Translates to: PDGADLSCDPEGVSSRVSQDWRY*SRPSDS
Trigger: AGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTG...CGAGACTCTAGAAGAGACACCCTCTGGGTCACAGGATAAGTCTGCTCCGTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR TCA 72 bp GCACGTTCACTTTATGAGAACAGCCCTGTGGCTCCCTaGCCACCACCTCCTACTGTCAGCAACATTCATCAC +
Preference number: 3 (lower is better)
Translates to: ARSLYENSPVAP*PPPPTVSNIHH
Trigger: GTGATGAATGTTGCTGACAGTAGGAGGTGGTGGTCAGGGAGCCACAGGGCTGTTCTCATAAAGTGAACGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR GCA 72 bp CCATTAAAGCTTAAGCAACTGTCCCGGCGGGACCGCTaGGTCTGTCAGCATTATTCACAGCGAATCCTTACG +
Preference number: 3 (lower is better)
Translates to: PLKLKQLSRRDR*VCQHYSQRILT
Trigger: CGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAGTTGCTTAAGCTTTAATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp TGGTCAGGCTTGGCCCAGCTATCTGGGGACTCATTCTaGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTC +
Preference number: 3 (lower is better)
Translates to: WSGLAQLSGDSF*PSFLEVMIWNF
Trigger: GAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp ACTGAAGAACAACAAAGTCAGGCAGGAAGAGACACATaGTCCTCAGTAGGTGTGCCACGAGGACACAGGACG +
Preference number: 3 (lower is better)
Translates to: TEEQQSQAGRDT*SSVGVPRGHRT
Trigger: CGTCCTGTGTCCTCGTGGCACACCTACTGAGGACCATGTGTCTCTTCCTGCCTGACTTTGTTGTTCTTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp GATCAGCACTGGGGTGCTGACTTCAGGCTGAACTGTGTGGTGAGCGGCAGAATGCTGTTGGTTGTTCCTTaGGCAAGGAGGTTCCAAATA +
Preference number: 3 (lower is better)
Translates to: DQHWGADFRLNCVVSGRMLLVVP*ARRFQI
Trigger: TATTTGGAACCTCCTTGCCAAAGGAACAACCAACAG...CATTCTGCCGCTCACCACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CAA 90 bp AGGGAAATGGGAGGAATGAGCTGGGCTCTTTCTGTGATGCATCTCCCAGCAGCTACCCATAGCTGTTGGTaGTTCCTTTGGCAAGGAGGT +
Preference number: 3 (lower is better)
Translates to: REMGGMSWALSVMHLPAATHSCW*FLWQGG
Trigger: ACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGT...AGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCATTTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CAA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTTGTCAAACAAAGGTTaGCTGGTGATGCTGCACAGT +
Preference number: 3 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRLSNKG*LVMLHS
Trigger: ACTGTGCAGCATCACCAGCAAACCTTTGTTTGACAA...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 72 bp TCCATCCCTTCGGCACCCAGAAGTTTGTATCTACACTaGGGAAGCCTTCCTTCTCGGAGGTTCTCCTGCTTA +
Preference number: 3 (lower is better)
Translates to: SIPSAPRSLYLH*GSLPSRRFSCL
Trigger: TAAGCAGGAGAACCTCCGAGAAGGAAGGCTTCCTCAGTGTAGATACAAACTTCTGGGTGCCGAAGGGATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp TGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTaGTTCTCTGGTCCTCATGCTTGTACAGCAAGCTCT +
Preference number: 3 (lower is better)
Translates to: CSPGLEIFEPPI*FSGPHACTASS
Trigger: AGAGCTTGCTGTACAAGCATGAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CCA 72 bp CTGGCTGGTTCAGGAGTGGAGATTTCTGCCTGGGTGTaGTCTTTACTGCTTGTATCATGGTGCTATTCCGAG +
Preference number: 3 (lower is better)
Translates to: LAGSGVEISAWV*SLLLVSWCYSE
Trigger: CTCGGAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACTCCTGAACCAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR TCA 72 bp CCTCTGAGTTGCAGTATGATGGCCGACTCCGCTGTATaGGCAGGTAGGCACCTTGAGTTTCATGTTGCATTA +
Preference number: 3 (lower is better)
Translates to: PLSCSMMADSAV*AGRHLEFHVAL
Trigger: TAATGCAACATGAAACTCAAGGTGCCTACCTGCTCATACAGCGGAGTCGGCCATCATACTGCAACTCAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 72 bp TTTACTGCTTGTATCATGGTGCTATTCCGAGGTAAGTaGGGAACTTGTGTGGTAGGAGCTTCAGCTGGCAGA +
Preference number: 3 (lower is better)
Translates to: FTACIMVLFRGK*GTCVVGASAGR
Trigger: TCTGCCAGCTGAAGCTCCTACCACACAAGTTCCCCACTTACCTCGGAATAGCACCATGATACAAGCAGTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR-3UTR CAA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCACAATGGTCTCTTGTaGTTTTGTCAAACAAAGGTT +
Preference number: 3 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWIHNGLL*FCQTKV
Trigger: AACCTTTGTTTGACAAAACAACAAGAGACCATTGTG...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCAACACAATGGTCTCTaGTTGTTTTGTCAAACAAAG +
Preference number: 3 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWIQHNGL*LFCQTK
Trigger: CTTTGTTTGACAAAACAACAAGAGACCATTGTGTTG...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 72 bp TACCTATGGAGAAGACGCTTTCAATCATCTGTTTACTaGTGTCCACTGAGACCACACTTGGGGGTGATCAAG +
Preference number: 3 (lower is better)
Translates to: YLWRRRFQSSVY*CPLRPHLGVIK
Trigger: CTTGATCACCCCCAAGTGTGGTCTCAGTGGACATCAGTAAACAGATGATTGAAAGCGTCTTCTCCATAGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CCA 72 bp CTGCATAGCTTTAAACTGCTCAGCACATTTGAGGAATaGAACCAGAATGGCTTTGTCAGAATGGTCCACTGG +
Preference number: 3 (lower is better)
Translates to: LHSFKLLSTFEE*NQNGFVRMVHW
Trigger: CCAGTGGACCATTCTGACAAAGCCATTCTGGTTCCATTCCTCAAATGTGCTGAGCAGTTTAAAGCTATGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp GGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTaGTGCTGCACAGTGAAACCTCCATCATCACTGAGA +
Preference number: 3 (lower is better)
Translates to: GLLLFCQTKVCW*CCTVKPPSSLR
Trigger: TCTCAGTGATGATGGAGGTTTCACTGTGCAGCATCACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CCA 72 bp CTGTCAGCATTATTCACAGCGAATCCTTACGCTAGCTaGTTGAGCCAACTGGGTTCTTACCCATCATTAAAT +
Preference number: 3 (lower is better)
Translates to: LSALFTANPYAS*LSQLGSYPSLN
Trigger: ATTTAATGATGGGTAAGAACCCAGTTGGCTCAACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR CAA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGTTGTCAAACAAAGGTTaGCTGGTGATGCTGCACAGT +
Preference number: 3 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRLSNKG*LVMLHS
Trigger: ACTGTGCAGCATCACCAGCAAACCTTTGTTTGACAA...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCTGGTCTCTTGTTGTTTaGTCAAACAAAGGTTTGCTG +
Preference number: 3 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGWSLVV*SNKGLL
Trigger: CAGCAAACCTTTGTTTGACAAAACAACAAGAGACCA...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCCAACACAATGGTCTCTaGTTGTTTTGTCAAACAAAG +
Preference number: 3 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLQHNGL*LFCQTK
Trigger: CTTTGTTTGACAAAACAACAAGAGACCATTGTGTTG...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR-3UTR CAA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGGCTTCACACACAAACTaGACACTTAAACTGCTGAGA +
Preference number: 3 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKASHTN*TLKLLR
Trigger: TCTCAGCAGTTTAAGTGTCAAGTTTGTGTGTGAAGC...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp CAACTTAGAAGCAGAAACATTGTCCAGGAAGCATGGTaGGATCAGCACAAGCCAATCAAAATGTTCTTTAGG +
Preference number: 3 (lower is better)
Translates to: QLRSRNIVQEAW*DQHKPIKMFFR
Trigger: CCTAAAGAACATTTTGATTGGCTTGTGCTGATCTCACCATGCTTCCTGGACAATGTTTCTGCTTCTAAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp CCCTCACATAACACTACACACACTCAAAAGCATCAGTaGGATTCATACCTATGGAGAAGACGCTTTCAATCA +
Preference number: 3 (lower is better)
Translates to: PSHNTTHTQKHQ*DSYLWRRRFQS
Trigger: TGATTGAAAGCGTCTTCTCCATAGGTATGAATCTCACTGATGCTTTTGAGTGTGTGTAGTGTTATGTGAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR-3UTR CAA 90 bp TCATTCTGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATCACAATGGTCTCTTGTaGTTTTGTCAAACAAAGGTT +
Preference number: 3 (lower is better)
Translates to: SFWPSFLEVMIWNFWLLNHNGLL*FCQTKV
Trigger: AACCTTTGTTTGACAAAACAACAAGAGACCATTGTG...ATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCAGAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp AAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTaGAGTCAAATCGGAATCCTATTGAAACATTGCACA +
Preference number: 3 (lower is better)
Translates to: KVICIALQRLKE*SQIGILLKHCT
Trigger: TGTGCAATGTTTCAATAGGATTCCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR TCA 72 bp TTTACACACTATCATGAAACTATCCCTAACTTAGTATaGAAAAGTCTAAGCTTCCCTGAATTCTGCACACTT +
Preference number: 3 (lower is better)
Translates to: FTHYHETIPNLV*KSLSFPEFCTL
Trigger: AAGTGTGCAGAATTCAGGGAAGCTTAGACTTTTTCATACTAAGTTAGGGATAGTTTCATGATAGTGTGTAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR TCA 72 bp CACCTCACTATGAGTTTACCTTGCTTAGATGACACGTaGACAATTAATTTTTGGTTGCTATATTTACACACT +
Preference number: 3 (lower is better)
Translates to: HLTMSLPCLDDT*TINFWLLYLHT
Trigger: AGTGTGTAAATATAGCAACCAAAAATTAATTGTTCACGTGTCATCTAAGCAAGGTAAACTCATAGTGAGGTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp CTGGTGGCTCCTCCCGAGGCCTGGAAAGCAAGCCGGCAGTCAGGCTCCTCATTCGTGTACAGGGCGACCTaGCCCGTGAGGTCTGCGATG +
Preference number: 4 (lower is better)
Translates to: LVAPPEAWKASRQSGSSFVYRAT*PVRSAM
Trigger: CATCGCAGACCTCACGGGCCAGGTCGCCCTGTACAC...GAATGAGGAGCCTGACTGCCGGCTTGCTTTCCAGGCCTCGGGAGGAGCCACCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CTGGTGGCTCCTCCCGAGGCCTGGAAAGCAAGCCGGCAGTCAGGCTCCTCATTCGGTCGCTGCAGCCATTaGCCTGGCTGGGACTCTGTT +
Preference number: 4 (lower is better)
Translates to: LVAPPEAWKASRQSGSSFGRCSH*PGWDSV
Trigger: AACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACC...GAATGAGGAGCCTGACTGCCGGCTTGCTTTCCAGGCCTCGGGAGGAGCCACCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp CCCCGGCCTCTGCTTCAAGGGTGTGAAGCCTCCTCCATCAGAGCCCAGCCGGCCGGTCTGCGATGCTGGTaGTATAGGGGTCGTGTTGTT +
Preference number: 4 (lower is better)
Translates to: PRPLLQGCEASSIRAQPAGLRCW*YRGRVV
Trigger: AACAACACGACCCCTATATCACCAGCATCGCAGACC...GGCCGGCTGGGCTCTGATGGAGGAGGCTTCACACCCTTGAAGCAGAGGCCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp CGACTGTGCAATGGAGGCGGGAGTGATCAGCACTGGGGTGCTGACTTCAGGCTGGGTCGCTGCAGCCATTaGCCTGGCTGGGACTCTGTT +
Preference number: 4 (lower is better)
Translates to: RLCNGGGSDQHWGADFRLGRCSH*PGWDSV
Trigger: AACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACC...CAGCCTGAAGTCAGCACCCCAGTGCTGATCACTCCCGCCTCCATTGCACAGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CCCCGGCCTCTGCTTCAAGGGTGTGAAGCCTCCTCCATCAGAGCCCAGCCGGCCCATAGACTGGAGGGTTaGAGCAAGCACCATGTTGCT +
Preference number: 4 (lower is better)
Translates to: PRPLLQGCEASSIRAQPAHRLEG*SKHHVA
Trigger: AGCAACATGGTGCTTGCTCCAACCCTCCAGTCTATG...GGCCGGCTGGGCTCTGATGGAGGAGGCTTCACACCCTTGAAGCAGAGGCCGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp GAACATCACTGTCCAGGGCTAGCTGTGGACAGTCCGGACGGAGCCTGCAGGGTAAAGCAGATCAACGCTTaGGAGGGCTGTGCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: EHHCPGLAVDSPDGACRVKQINA*EGCASW
Trigger: CCAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTT...TACCCTGCAGGCTCCGTCCGGACTGTCCACAGCTAGCCCTGGACAGTGATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CAA 72 bp CAGGCCAGACTCATCCAACCGCACCTATGGTCAGGCTaGGCCCAGCTATCTGGGGACTCATTCTGGCCTAGC +
Preference number: 4 (lower is better)
Translates to: QARLIQPHLWSG*AQLSGDSFWPS
Trigger: GCTAGGCCAGAATGAGTCCCCAGATAGCTGGGCCAAGCCTGACCATAGGTGCGGTTGGATGAGTCTGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR TCA 90 bp CTGTCCCGGCGGGACCGCTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGGGGGGACAGCAGGACTaGAGATACTGCTGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: LSRRDRCVCQHYSQRILTGGQQD*RYCCGG
Trigger: ACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCC...CGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR TCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATCTGAGGGGCTCCCCCTaGCTGCTCAAAGGGAAATGG +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDLRGSP*LLKGKW
Trigger: CCATTTCCCTTTGAGCAGTCAGGGGGAGCCCCTCAG...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATGGGGCTCCCCCTGACTaGTCAAAGGGAAATGGGAGG +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDGAPPD*SKGNGR
Trigger: CCTCCCATTTCCCTTTGAGCAGTCAGGGGGAGCCCC...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGTGTACAGGGCGACCTaGCCCGTGAGGTCTGCGATG +
Preference number: 4 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSVYRAT*PVRSAM
Trigger: CATCGCAGACCTCACGGGCCAGGTCGCCCTGTACAC...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGGGAAATGGGAGGAATGAGCTGGGCTCTTTCTGTGATGCATCTCCCAGCAGCTGTGTACAGGGCGACCTaGCCCGTGAGGTCTGCGATG +
Preference number: 4 (lower is better)
Translates to: REMGGMSWALSVMHLPAAVYRAT*PVRSAM
Trigger: CATCGCAGACCTCACGGGCCAGGTCGCCCTGTACAC...AGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCATTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CTGTCCCGGCGGGACCGCTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGCCCACTGGTTGGCTTTaGGGCAGAAAGTGTACAGGG +
Preference number: 4 (lower is better)
Translates to: LSRRDRCVCQHYSQRILTPTGWL*GRKCTG
Trigger: CCCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGG...CGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTCGAGCAGCCTGCTaGGATCGCCGTGTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDSRAAC*DRRVSS
Trigger: AGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGA...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GCTGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTGATTCTCTGGTCCTCTCTCGAGCAGCCTGCTaGGATCGCCGTGTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: AVAQDWRYLSRPSDSLVLSRAAC*DRRVSS
Trigger: AGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGA...GAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CGACTGTGCAATGGAGGCGGGAGTGATCAGCACTGGGGTGCTGACTTCAGGCTGAGCCATTGGCCTGGCTaGGACTCTGTTTATCTCGAG +
Preference number: 4 (lower is better)
Translates to: RLCNGGGSDQHWGADFRLSHWPG*DSVYLE
Trigger: CTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCT...CAGCCTGAAGTCAGCACCCCAGTGCTGATCACTCCCGCCTCCATTGCACAGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
3UTR CAA 72 bp TCCTGTGCCCGTGCCCTTCCTTCTCTTCCCTCTGAGTaGCAGTATGATGGCCGACTCCGCTGTATGAGCAGG +
Preference number: 4 (lower is better)
Translates to: SCARALPSLPSE*QYDGRLRCMSR
Trigger: CCTGCTCATACAGCGGAGTCGGCCATCATACTGCAACTCAGAGGGAAGAGAAGGAAGGGCACGGGCACAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp GCTGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTGATTCTCTGGTCCTCCTGGCCCGTGAGGTCTaGGATGCTGGTGATATAGGG +
Preference number: 4 (lower is better)
Translates to: AVAQDWRYLSRPSDSLVLLAREV*DAGDIG
Trigger: CCCTATATCACCAGCATCGCAGACCTCACGGGCCAG...GAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CGACTGTGCAATGGAGGCGGGAGTGATCAGCACTGGGGTGCTGACTTCAGGCTGTCTTCTCCCACTGGTTaGCTTTGGGGCAGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: RLCNGGGSDQHWGADFRLSSPTG*LWGRKC
Trigger: ACACTTTCTGCCCCAAAGCCAACCAGTGGGAGAAGA...CAGCCTGAAGTCAGCACCCCAGTGCTGATCACTCCCGCCTCCATTGCACAGTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp GATCAGCACTGGGGTGCTGACTTCAGGCTGAACTGTGTGGTGAGCGGCAGAATGTCTCCAGGATATCTATaGGCCTCTGGTCGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: DQHWGADFRLNCVVSGRMSPGYL*ASGRCS
Trigger: GCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGA...CATTCTGCCGCTCACCACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGGCTCTGAAGGGGCTCTaGCTAGCAACCAGACTGCTG +
Preference number: 4 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRALKGL*LATRLL
Trigger: CAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGC...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTGGGGGACAGCAGGACTaGAGATACTGCTGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLAGGQQD*RYCCGG
Trigger: ACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCC...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTGGCCCGTGAGGTCTaGGATGCTGGTGATATAGGG +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWILAREV*DAGDIG
Trigger: CCCTATATCACCAGCATCGCAGACCTCACGGGCCAG...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp CTATTCCGAGGTAAGTGGGGAACTTGTGTGGTAGGAGCTTCAGCTGGCAGAGTGTTATCTCGAGCAGCCTaGTGGGATCGCCGTGTCTCC +
Preference number: 4 (lower is better)
Translates to: LFRGKWGTCVVGASAGRVLSRAA*WDRRVS
Trigger: GGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAA...CACTCTGCCAGCTGAAGCTCCTACCACACAAGTTCCCCACTTACCTCGGAATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTCTCCAGGATATCTATaGGCCTCTGGTCGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRSPGYL*ASGRCS
Trigger: GCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGA...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: SCSMRKPACLEADPLPSHSHTHP*PGSASP
Trigger: TGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGA...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATTGGCTGGTTCAGGAGTaGAGATTTCTGCCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: SCSMRKPACLEADPLPSHWLVQE*RFLPGC
Trigger: ACACCCAGGCAGAAATCTCCACTCCTGAACCAGCCA...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTAAGCAGATCAACGCTTaGGAGGGCTGTGCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSKQINA*EGCASW
Trigger: CCAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTT...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTGCTGGGCTCTTTCTGTaGTGCATCTCCCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLAAGLFL*CISQQL
Trigger: AAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGC...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTTCAGCACTGGGGTGCTaGCTTCAGGCTGAACTGTGT +
Preference number: 4 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSSALGC*LQAELC
Trigger: ACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGA...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCAACAACTCCATCTTaGATCTCAGAGCCGAGCCCC +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDSTTPS*ISEPSP
Trigger: GGGGCTCGGCTCTGAGATCCAAGATGGAGTTGTTGA...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATTCTTCTCCCACTGGTTaGCTTTGGGGCAGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: SCSMRKPACLEADPLPSHSSPTG*LWGRKC
Trigger: ACACTTTCTGCCCCAAAGCCAACCAGTGGGAGAAGA...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGAGCCATTGGCCTGGCTaGGACTCTGTTTATCTCGAG +
Preference number: 4 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRSHWPG*DSVYLE
Trigger: CTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCT...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GCTGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTGATTCTCTGGTCCTCCTGCAGCCATTGGCCTaGCTGGGACTCTGTTTATCT +
Preference number: 4 (lower is better)
Translates to: AVAQDWRYLSRPSDSLVLLQPLA*LGLCLS
Trigger: AGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAG...GAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCTGGCTGGTTCAGGAGTaGAGATTTCTGCCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGWLVQE*RFLPGC
Trigger: ACACCCAGGCAGAAATCTCCACTCCTGAACCAGCCA...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATGGTTGCAGGAACCAATaGAGAGCCTGCAATCGGGAT +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDGCRNQ*RACNRD
Trigger: ATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACC...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTGGTCTGCGATGCTGGTaGTATAGGGGTCGTGTTGTT +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWIGLRCW*YRGRVV
Trigger: AACAACACGACCCCTATATCACCAGCATCGCAGACC...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATAGGACTGGAGATATTTaGGCCGCCCATCTGATTCCT +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDRTGDI*AAHLIP
Trigger: AGGAATCAGATGGGCGGCTCAAATATCTCCAGTCCT...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATGTCAACCTGAGTTTCTaGAGCAGATCAACGCTTGGG +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDVNLSF*SRSTLG
Trigger: CCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGAC...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGAGTGTGTCCTGGAGCTaGGACTTGCTGAGGATAATG +
Preference number: 4 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRSVSWS*DLLRIM
Trigger: CATTATCCTCAGCAAGTCTCAGCTCCAGGACACACT...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp ATCAATAGCAGCATCACAAAGCATCTTTACAGTTCTGACTGCGGCCAGAGAGCTCGCTTGGGAGGGCTGTaGCAGCTGGGTTTGCTAGGC +
Preference number: 4 (lower is better)
Translates to: INSSITKHLYSSDCGQRARLGGL*QLGLLG
Trigger: GCCTAGCAAACCCAGCTGGCACAGCCCTCCCAAGCG...AGCTCTCTGGCCGCAGTCAGAACTGTAAAGATGCTTTGTGATGCTGCTATTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR GCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTCTTTCTCTGACTCTCTaGTGTCCCAACAGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLALSLTL*CPNSEG
Trigger: CCCCTCACTGTTGGGACAGCAGAGAGTCAGAGAAAG...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGGGAAATGGGAGGAATGAGCTGGGCTCTTTCTGTGATGCATCTCCCAGCAGCTTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: REMGGMSWALSVMHLPAASHTHP*PGSASP
Trigger: TGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGA...AGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCATTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTTGGGAGTGTGTAGCTTaGGGGATGTTTGTCACCCGA +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLAWECVA*GMFVTR
Trigger: TCGGGTGACAAACATCCCCCAAGCTACACACTCCCA...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACACTGAGGAAGCCTTCCTTCTCGGAGGTTCTCCTGCTTATCACAGTCATTCCTGCTCTGAAGGGGCTCTaGCTAGCAACCAGACTGCTG +
Preference number: 4 (lower is better)
Translates to: TLRKPSFSEVLLLITVIPALKGL*LATRLL
Trigger: CAGCAGTCTGGTTGCTAGCCAGAGCCCCTTCAGAGC...AGGAATGACTGTGATAAGCAGGAGAACCTCCGAGAAGGAAGGCTTCCTCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATCTGAAGATACTGCTGTaGTGGTTGCAGGAACCAATG +
Preference number: 4 (lower is better)
Translates to: SCSMRKPACLEADPLPSHLKILL*WLQEPM
Trigger: CATTGGTTCCTGCAACCACCACAGCAGTATCTTCAG...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CAA 72 bp GAGCTGGGCTCTTTCTGTGATGCATCTCCCAGCAGCTaGTCTGTGTCCTCTGACTCTAGACCCATAGCTGTT +
Preference number: 4 (lower is better)
Translates to: ELGSFCDASPSS*SVSSDSRPIAV
Trigger: AACAGCTATGGGTCTAGAGTCAGAGGACACAGACAAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR TCA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCCTACCACATCAGCCATaGGTTTTGCTATGCGATGAC +
Preference number: 4 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGLPHQP*VLLCDD
Trigger: GTCATCGCATAGCAAAACTCATGGCTGATGTGGTAG...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTGTCAACCTGAGTTTCTaGAGCAGATCAACGCTTGGG +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLAVNLSF*SRSTLG
Trigger: CCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGAC...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTATGGAAGGCTTTCTCTaGCTCTCTGCTGTCCCAACA +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWIMEGFL*LSAVPT
Trigger: TGTTGGGACAGCAGAGAGTCAGAGAAAGCCTTCCAT...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTAGTGTGTCCTGGAGCTaGGACTTGCTGAGGATAATG +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWISVSWS*DLLRIM
Trigger: CATTATCCTCAGCAAGTCTCAGCTCCAGGACACACT...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTTGCTGCTCTTGCTGCTaGTGTCTTAGAAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWICCSCC*CLRRRL
Trigger: GAGCCTTCTTCTAAGACAGCAGCAGCAAGAGCAGCA...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp TCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACCCACTGGTTGGCTTTaGGGCAGAAAGTGTACAGGG +
Preference number: 4 (lower is better)
Translates to: SKPTVRCSAQTGAFWILEPTGWL*GRKCTG
Trigger: CCCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGG...TTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp TCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAAGCTGTAGCCCAGGACTaGAGATATTTGAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: SKPTVRCSAQTGAFWILEAVAQD*RYLSRP
Trigger: TGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC...TTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp ATCAATAGCAGCATCACAAAGCATCTTTACAGTTCTGACTGCGGCCAGAGAGCTTTATCTCGAGCAGCCTaGTGGGATCGCCGTGTCTCC +
Preference number: 4 (lower is better)
Translates to: INSSITKHLYSSDCGQRALSRAA*WDRRVS
Trigger: GGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAA...AGCTCTCTGGCCGCAGTCAGAACTGTAAAGATGCTTTGTGATGCTGCTATTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR GCA 90 bp AATGGCAGTTACGGCCTCTACTACGGAACACAAAGACATCCCAGAAGTCTTAAGTTATCTCGAGCAGCCTaGTGGGATCGCCGTGTCTCC +
Preference number: 4 (lower is better)
Translates to: NGSYGLYYGTQRHPRSLKLSRAA*WDRRVS
Trigger: GGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAA...CTTAAGACTTCTGGGATGTCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACGCTTGGGAGGGCTGTaGCAGCTGGGTTTGCTAGGC +
Preference number: 4 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLRLGGL*QLGLLG
Trigger: GCCTAGCAAACCCAGCTGGCACAGCCCTCCCAAGCG...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTTCAGGATCCTGGTTTTaGTGCATAGACTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWISGSWF*CIDWRV
Trigger: AACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGA...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACACTGAGGAAGCCTTCCTTCTCGGAGGTTCTCCTGCTTATCACAGTCATTCCTAGCCATTGGCCTGGCTaGGACTCTGTTTATCTCGAG +
Preference number: 4 (lower is better)
Translates to: TLRKPSFSEVLLLITVIPSHWPG*DSVYLE
Trigger: CTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCT...AGGAATGACTGTGATAAGCAGGAGAACCTCCGAGAAGGAAGGCTTCCTCAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTATGGGAGGAATGAGCTaGGCTCTTTCTGTGATGCAT +
Preference number: 4 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLAMGGMS*ALSVMH
Trigger: ATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCAT...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACAACGCTGCATGACAAACTCTGGGCTGCTCTTCCCAGACCCTTTGACCACTGGGGTAACACCTTAGGCTaGGAAAATACTTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: TTLHDKLWAALPRPFDHWGNTLG*ENTSGS
Trigger: GGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACC...CCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAGCGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR TCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACCTGCTGTCCCAACAGTaGGGGGAGAGGGGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNLLSQQ*GERGSW
Trigger: CCAGCTCCCCCTCTCCCCTCACTGTTGGGACAGCAG...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ATCACTGAGAACGTCTCTAGGAAACATCCTTACGGACAAGGCTCTCAGGCTCCTATGGAAGGCTTTCTCTaGCTCTCTGCTGTCCCAACA +
Preference number: 4 (lower is better)
Translates to: ITENVSRKHPYGQGSQAPMEGFL*LSAVPT
Trigger: TGTTGGGACAGCAGAGAGTCAGAGAAAGCCTTCCAT...AGGAGCCTGAGAGCCTTGTCCGTAAGGATGTTTCCTAGAGACGTTCTCAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCAACCTGCAAGTAAACTaGATGAAGCGTACTGAGGAA +
Preference number: 4 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGNLQVN*MKRTEE
Trigger: TTCCTCAGTACGCTTCATGCAGTTTACTTGCAGGTT...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GACTCTAGACCCATAGCTGTTGGTTGTTCCTTTGGCAAGGAGGTTCCAAATAACCCCACTGGTTGGCTTTaGGGCAGAAAGTGTACAGGG +
Preference number: 4 (lower is better)
Translates to: DSRPIAVGCSFGKEVPNNPTGWL*GRKCTG
Trigger: CCCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGG...GTTATTTGGAACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGTCTAGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CTGTCCCGGCGGGACCGCTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGCAAATCTTTATTCACTaGCTCAACCAGATTGTGCAT +
Preference number: 4 (lower is better)
Translates to: LSRRDRCVCQHYSQRILTQIFIH*LNQIVH
Trigger: ATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTG...CGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTAGGTCGCTGCAGCCATTaGCCTGGCTGGGACTCTGTT +
Preference number: 4 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLGRCSH*PGWDSV
Trigger: AACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACC...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCGCTGTAGCCCAGGACTaGAGATATTTGAGCCGCCCA +
Preference number: 4 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLAVAQD*RYLSRP
Trigger: TGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCATTTCTGCCTGGGTGTaGTCTTTACTGCTTGTATCA +
Preference number: 4 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGISAWV*SLLLVS
Trigger: TGATACAAGCAGTAAAGACCACACCCAGGCAGAAAT...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGAATACTTCAGGATCCTaGTTTTGCTGCATAGACTGG +
Preference number: 4 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRNTSGS*FCCIDW
Trigger: CCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATT...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp GACTCTAGACCCATAGCTGTTGGTTGTTCCTTTGGCAAGGAGGTTCCAAATAACGGTCTGCGATGCTGGTaGTATAGGGGTCGTGTTGTT +
Preference number: 4 (lower is better)
Translates to: DSRPIAVGCSFGKEVPNNGLRCW*YRGRVV
Trigger: AACAACACGACCCCTATATCACCAGCATCGCAGACC...GTTATTTGGAACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGTCTAGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR TCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTCTGAGGGGCTCCCCCTaGCTGCTCAAAGGGAAATGG +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGLRGSP*LLKGKW
Trigger: CCATTTCCCTTTGAGCAGTCAGGGGGAGCCCCTCAG...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTGTTGCTCAGGGAGGCTaGGACTGCTGCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGVAQGG*DCCSCC
Trigger: GCAGCAAGAGCAGCAGTCTCAGCCTCCCTGAGCAAC...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATATCAGCCATGAGTTTTaGTATGCGATGACAGTCATT +
Preference number: 4 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDISHEF*YAMTVI
Trigger: AATGACTGTCATCGCATAGCAAAACTCATGGCTGAT...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAAAGGAGTGGAGATTTCTaGCTGGGTGTGGTCTTTACT +
Preference number: 4 (lower is better)
Translates to: SKPTVRCSAQTGAFWILERSGDF*LGVVFT
Trigger: AGTAAAGACCACACCCAGGCAGAAATCTCCACTCCT...TTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCCTTTCTCTGACTCTCTaGTGTCCCAACAGTGAGGGG +
Preference number: 4 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLLSLTL*CPNSEG
Trigger: CCCCTCACTGTTGGGACAGCAGAGAGTCAGAGAAAG...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CTGTCCCGGCGGGACCGCTGCGTCTGTCAGCATTATTCACAGCGAATCCTTACGTCTATACAGAAGAAATaGTTCATGGAGCTGAAATTC +
Preference number: 4 (lower is better)
Translates to: LSRRDRCVCQHYSQRILTSIQKK*FMELKF
Trigger: GAATTTCAGCTCCATGAACCATTTCTTCTGTATAGA...CGTAAGGATTCGCTGTGAATAATGCTGACAGACGCAGCGGTCCCGCCGGGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCA +
Preference number: 4 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLSHTHP*PGSASP
Trigger: TGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGA...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCGGTTGCAGGAACCAATaGAGAGCCTGCAATCGGGAT +
Preference number: 4 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLGCRNQ*RACNRD
Trigger: ATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACC...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp AATGGCAGTTACGGCCTCTACTACGGAACACAAAGACATCCCAGAAGTCTTAAGAGGACTGGAGATATTTaGGCCGCCCATCTGATTCCT +
Preference number: 4 (lower is better)
Translates to: NGSYGLYYGTQRHPRSLKRTGDI*AAHLIP
Trigger: AGGAATCAGATGGGCGGCTCAAATATCTCCAGTCCT...CTTAAGACTTCTGGGATGTCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTCTGCTGTCCCAACAGTaGGGGGAGAGGGGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVLLSQQ*GERGSW
Trigger: CCAGCTCCCCCTCTCCCCTCACTGTTGGGACAGCAG...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR GCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACGGGGCTCCCCCTGACTaGTCAAAGGGAAATGGGAGG +
Preference number: 4 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNGAPPD*SKGNGR
Trigger: CCTCCCATTTCCCTTTGAGCAGTCAGGGGGAGCCCC...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTGCAACCAGACTGCTGTaGCTTAGCTCAGGGACTGGC +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGATRLL*LSSGTG
Trigger: GCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGC...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTGCTGGGCTCTTTCTGTaGTGCATCTCCCAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGAGLFL*CISQQL
Trigger: AAGCTGCTGGGAGATGCATCACAGAAAGAGCCCAGC...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTTCAGCACTGGGGTGCTaGCTTCAGGCTGAACTGTGT +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGSALGC*LQAELC
Trigger: ACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGA...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCGCTGTGGGGTCAACCTaGGTTTCTGAAGCAGATCAA +
Preference number: 4 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGAVGST*VSEADQ
Trigger: TTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGC...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCTGCTGCTCTTGCTGCTaGTGTCTTAGAAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGCCSCC*CLRRRL
Trigger: GAGCCTTCTTCTAAGACAGCAGCAGCAAGAGCAGCA...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CTATTCCGAGGTAAGTGGGGAACTTGTGTGGTAGGAGCTTCAGCTGGCAGAGTGCAAATCTTTATTCACTaGCTCAACCAGATTGTGCAT +
Preference number: 4 (lower is better)
Translates to: LFRGKWGTCVVGASAGRVQIFIH*LNQIVH
Trigger: ATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTG...CACTCTGCCAGCTGAAGCTCCTACCACACAAGTTCCCCACTTACCTCGGAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGCTGCAGCCATTGGCCTaGCTGGGACTCTGTTTATCT +
Preference number: 4 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKLQPLA*LGLCLS
Trigger: AGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAG...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CAA 72 bp TGCTCAGCACATTTGAGGAATGGAACCAGAATGGCTTaGTCAGAATGGTCCACTGGTCCTTTTGCCAAAGTG +
Preference number: 4 (lower is better)
Translates to: CSAHLRNGTRMA*SEWSTGPFAKV
Trigger: CACTTTGGCAAAAGGACCAGTGGACCATTCTGACAAAGCCATTCTGGTTCCATTCCTCAAATGTGCTGAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR TCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTGTTGCTCAGGGAGGCTaGGACTGCTGCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVVAQGG*DCCSCC
Trigger: GCAGCAAGAGCAGCAGTCTCAGCCTCCCTGAGCAAC...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp TTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACTCAACAACTCCATCTTaGATCTCAGAGCCGAGCCCC +
Preference number: 4 (lower is better)
Translates to: LSFMLHYQCYNGSYGLYYSTTPS*ISEPSP
Trigger: GGGGCTCGGCTCTGAGATCCAAGATGGAGTTGTTGA...GTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp TGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTTCTATACAGAAGAAATaGTTCATGGAGCTGAAATTC +
Preference number: 4 (lower is better)
Translates to: WPSKPTVRCSAQTGAFWISIQKK*FMELKF
Trigger: GAATTTCAGCTCCATGAACCATTTCTTCTGTATAGA...AATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGCTGCAGCCATTGGCCTaGCTGGGACTCTGTTTATCT +
Preference number: 4 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRLQPLA*LGLCLS
Trigger: AGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAG...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGGGCTGTGCTTGTATTTaGTCATGCTGTGGGGTCAAC +
Preference number: 4 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKGCACI*SCCGVN
Trigger: GTTGACCCCACAGCATGACCAAATACAAGCACAGCC...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp TTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACGGAACACAAAGACATAGACTGGAGGGTTaGAGCAAGCACCATGTTGCT +
Preference number: 4 (lower is better)
Translates to: LHYQCYNGSYGLYYGTQRHRLEG*SKHHVA
Trigger: AGCAACATGGTGCTTGCTCCAACCCTCCAGTCTATG...TCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTGCTGTGGGGTCAACCTaGGTTTCTGAAGCAGATCAA +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGAVGST*VSEADQ
Trigger: TTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGC...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTCTGGCCCGTGAGGTCTaGGATGCTGGTGATATAGGG +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVLAREV*DAGDIG
Trigger: CCCTATATCACCAGCATCGCAGACCTCACGGGCCAG...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR GCA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTATCAGGATCCTGGTTTTaGTGCATAGACTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLSGSWF*CIDWRV
Trigger: AACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGA...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTTCTTCTCCCACTGGTTaGCTTTGGGGCAGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGSSPTG*LWGRKC
Trigger: ACACTTTCTGCCCCAAAGCCAACCAGTGGGAGAAGA...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp TTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACGGAACACAAAGAATGGGAGGAATGAGCTaGGCTCTTTCTGTGATGCAT +
Preference number: 4 (lower is better)
Translates to: LHYQCYNGSYGLYYGTQRMGGMS*ALSVMH
Trigger: ATGCATCACAGAAAGAGCCCAGCTCATTCCTCCCAT...TCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACTGGGAGTGTGTAGCTTaGGGGATGTTTGTCACCCGA +
Preference number: 4 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNWECVA*GMFVTR
Trigger: TCGGGTGACAAACATCCCCCAAGCTACACACTCCCA...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTGCAACCAGACTGCTGTaGCTTAGCTCAGGGACTGGC +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVATRLL*LSSGTG
Trigger: GCCAGTCCCTGAGCTAAGCCACAGCAGTCTGGTTGC...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTGGCTGTGCTTGTATTTaGTCATGCTGTGGGGTCAAC +
Preference number: 4 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGGCACI*SCCGVN
Trigger: GTTGACCCCACAGCATGACCAAATACAAGCACAGCC...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACAGGAGTGGAGATTTCTaGCTGGGTGTGGTCTTTACT +
Preference number: 4 (lower is better)
Translates to: LSFMLHYQCYNGSYGLYYRSGDF*LGVVFT
Trigger: AGTAAAGACCACACCCAGGCAGAAATCTCCACTCCT...GTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTTCTCCAGGATATCTATaGGCCTCTGGTCGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVSPGYL*ASGRCS
Trigger: GCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGA...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
3UTR CAA 72 bp TCAGCATTATTCACAGCGAATCCTTACGCTAGCTGGTaGAGCCAACTGGGTTCTTACCCATCATTAAATAGT +
Preference number: 4 (lower is better)
Translates to: SALFTANPYASW*SQLGSYPSLNS
Trigger: ACTATTTAATGATGGGTAAGAACCCAGTTGGCTCAACCAGCTAGCGTAAGGATTCGCTGTGAATAATGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGGGTAACACCTTAGGCTaGGAAAATACTTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRGNTLG*ENTSGS
Trigger: GGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACC...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACCTGAAGATACTGCTGTaGTGGTTGCAGGAACCAATG +
Preference number: 4 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNLKILL*WLQEPM
Trigger: CATTGGTTCCTGCAACCACCACAGCAGTATCTTCAG...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCGGTTGTCTTTGTTCTTaGTCAGAACCTGCAAGTAAA +
Preference number: 4 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGGCLCS*SEPASK
Trigger: TTTACTTGCAGGTTCTGACCAAGAACAAAGACAACC...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR GCA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGATCAGCCATGAGTTTTaGTATGCGATGACAGTCATT +
Preference number: 4 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKISHEF*YAMTVI
Trigger: AATGACTGTCATCGCATAGCAAAACTCATGGCTGAT...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR GCA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGAACCTGCAAGTAAACTaGATGAAGCGTACTGAGGAA +
Preference number: 4 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRNLQVN*MKRTEE
Trigger: TTCCTCAGTACGCTTCATGCAGTTTACTTGCAGGTT...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCAAATCTTTATTCACTaGCTCAACCAGATTGTGCAT +
Preference number: 4 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGQIFIH*LNQIVH
Trigger: ATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTG...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CCA 90 bp AGTGGAGATTTCTGCCTGGGTGTGGTCTTTACTGCTTGTATCATGGTGCTATTCTCTATACAGAAGAAATaGTTCATGGAGCTGAAATTC +
Preference number: 4 (lower is better)
Translates to: SGDFCLGVVFTACIMVLFSIQKK*FMELKF
Trigger: GAATTTCAGCTCCATGAACCATTTCTTCTGTATAGA...GAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CCA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGAATACTTCAGGATCCTaGTTTTGCTGCATAGACTGG +
Preference number: 4 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRNTSGS*FCCIDW
Trigger: CCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATT...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR TCA 90 bp ATAAATAGAAACCATGGCAGATCAATAGCAGCATCACAAAGCATCTTTACAGTTCTACCACATCAGCCATaGGTTTTGCTATGCGATGAC +
Preference number: 4 (lower is better)
Translates to: INRNHGRSIAASQSIFTVLPHQP*VLLCDD
Trigger: GTCATCGCATAGCAAAACTCATGGCTGATGTGGTAG...AACTGTAAAGATGCTTTGTGATGCTGCTATTGATCTGCCATGGTTTCTATTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CCA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACATTTCTGCCTGGGTGTaGTCTTTACTGCTTGTATCA +
Preference number: 4 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNISAWV*SLLLVS
Trigger: TGATACAAGCAGTAAAGACCACACCCAGGCAGAAAT...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
3UTR CAA 72 bp GGCCCAAGCGGGGTGCTCATAGAAAATATACTTCACTaGAACAAATACCTTCCAAAGAGTCAACTTAAATTC +
Preference number: 4 (lower is better)
Translates to: GPSGVLIENILH*NKYLPKSQLKF
Trigger: GAATTTAAGTTGACTCTTTGGAAGGTATTTGTTCAAGTGAAGTATATTTTCTATGAGCACCCCGCTTGGGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp CCGCCAGACTCATCTCTTGCTCAGCTCGACTCAACAACTCCATCTTaGATCTCAGAGCCGAGCCCCTCCGGCGGGGGCGGACTGTGGAAC +
Preference number: 5 (lower is better)
Translates to: PPDSSLAQLDSTTPS*ISEPSPSGGGGLWN
Trigger: GTTCCACAGTCCGCCCCCGCCGGAGGGGCTCGGCTCTGAGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp CCAGGATATCTATGGGCCTCTGGTCGCTGCAGCCATTGGCCTGGCTaGGACTCTGTTTATCTCGAGCAGCCTGCTGGGATCGCCGTGTCT +
Preference number: 5 (lower is better)
Translates to: PGYLWASGRCSHWPG*DSVYLEQPAGIAVS
Trigger: AGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATGGCCCTGGGAACCGTTaGCTGGAACACACTGGGGGA +
Preference number: 5 (lower is better)
Translates to: SCSMRKPACLEADPLPSHGPGNR*LEHTGG
Trigger: TCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCC...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS TCA 90 bp GGCCCTGGGAACCGTTTGCTGGAACACACTGGGGGACAGCAGGACTaGAGATACTGCTGTGGTGGTTGCAGGAACCAATGGAGAGCCTGC +
Preference number: 5 (lower is better)
Translates to: GPGNRLLEHTGGQQD*RYCCGGCRNQWRAC
Trigger: GCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp ATCTCCAGGATATCTATGGGCCTCTGGTCGCTGCAGCCATTGGCCTaGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTGGGATCGCCGT +
Preference number: 5 (lower is better)
Translates to: ISRISMGLWSLQPLA*LGLCLSRAACWDRR
Trigger: ACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp GAGCTGGCTTTCCTCTCTAGGTCTGCGGCCCTGGGAACCGTTTGCTaGAACACACTGGGGGACAGCAGGACTGAAGATACTGCTGTGGTG +
Preference number: 5 (lower is better)
Translates to: ELAFLSRSAALGTVC*NTLGDSRTEDTAVV
Trigger: CACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCCGCAGACCTAGAGAGGAAAGCCAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATGAAGCAGATCAACGCTaGGGAGGGCTGTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: SCSMRKPACLEADPLPSHEADQR*GGLCQL
Trigger: CAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTTC...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATGGCCCTGGGAACCGTTaGCTGGAACACACTGGGGGA +
Preference number: 5 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDGPGNR*LEHTGG
Trigger: TCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCC...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 90 bp CTGCAGCCATTGGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTaGTGGGATCGCCGTGTCTCCTCTTCTACCACATCAGCCATGAGT +
Preference number: 5 (lower is better)
Translates to: LQPLAWLGLCLSRAA*WDRRVSSSTTSAMS
Trigger: ACTCATGGCTGATGTGGTAGAAGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp TCAGCATCTCCAGGATATCTATGGGCCTCTGGTCGCTGCAGCCATTaGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTGGGATC +
Preference number: 5 (lower is better)
Translates to: SASPGYLWASGRCSH*PGWDSVYLEQPAGI
Trigger: GATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp TCATCCTTGGCCCGGCTCAGCATCTCCAGGATATCTATGGGCCTCTaGTCGCTGCAGCCATTGGCCTGGCTGGGACTCTGTTTATCTCGA +
Preference number: 5 (lower is better)
Translates to: SSLARLSISRISMGL*SLQPLAWLGLCLSR
Trigger: TCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp TCTCATACTCATCCTTGGCCCGGCTCAGCATCTCCAGGATATCTATaGGCCTCTGGTCGCTGCAGCCATTGGCCTGGCTGGGACTCTGTT +
Preference number: 5 (lower is better)
Translates to: SHTHPWPGSASPGYL*ASGRCSHWPGWDSV
Trigger: AACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp GCTGGAACACACTGGGGGACAGCAGGACTGAAGATACTGCTGTGGTaGTTGCAGGAACCAATGGAGAGCCTGCAATCGGGATGGCACTGG +
Preference number: 5 (lower is better)
Translates to: AGTHWGTAGLKILLW*LQEPMESLQSGWHW
Trigger: CCAGTGCCATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GAACATCACTGTCCAGGGCTAGCTGTGGACAGTCCGGACGGAGCCTGCAGGGTATCCAAGCGGCTGTGCTaGTATTTGGTCATGCTGTGG +
Preference number: 5 (lower is better)
Translates to: EHHCPGLAVDSPDGACRVSKRLC*YLVMLW
Trigger: CCACAGCATGACCAAATACAAGCACAGCCGCTTGGA...TACCCTGCAGGCTCCGTCCGGACTGTCCACAGCTAGCCCTGGACAGTGATGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CAA 90 bp ACAACGCTGCATGACAAACTCTGGGCTGCTCTTCCCAGACCCTTTGACCACTGGCTCAGGGGTGGCCAGTaGGCCAGCTGCCGAAGAAAA +
Preference number: 5 (lower is better)
Translates to: TTLHDKLWAALPRPFDHWLRGGQ*ASCRRK
Trigger: TTTTCTTCGGCAGCTGGCCAACTGGCCACCCCTGAG...CCAGTGGTCAAAGGGTCTGGGAAGAGCAGCCCAGAGTTTGTCATGCAGCGTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CAA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCCTCTCATACTCATCCTaGGCCCGGCTCAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGLSYSS*ARLSIS
Trigger: GGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAG...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CCAGACGGAGCAGACTTATCCTGTGACCCAGAGGGTGTCTCTTCTAGAGTCTCGCTCTCATACTCATCCTaGGCCCGGCTCAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: PDGADLSCDPEGVSSRVSLSYSS*ARLSIS
Trigger: GGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAG...CGAGACTCTAGAAGAGACACCCTCTGGGTCACAGGATAAGTCTGCTCCGTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp CCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGAAGCAGATCAACGCTaGGGAGGGCTGTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: PHGNSPREWPSKPTVRCSEADQR*GGLCQL
Trigger: CAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTTC...AGAGCACCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 90 bp GAGCTGAGACTTGCTGAGGATAATGGAAGGCTTTCTCTGACTCTCTaGTGTCCCAACAGTGAGGGGAGAGGGGGAGCTGGCTTTCCTCTC +
Preference number: 5 (lower is better)
Translates to: ELRLAEDNGRLSLTL*CPNSEGRGGAGFPL
Trigger: GAGAGGAAAGCCAGCTCCCCCTCTCCCCTCACTGTTGGGACAGCAGAGAGTCAGAGAAAGCCTTCCATTATCCTCAGCAAGTCTCAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp CAGCCATTGGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTaGGATCGCCGTGTCTCCTCTTCTACCACATCAGCCATGAGTTTT +
Preference number: 5 (lower is better)
Translates to: QPLAWLGLCLSRAAC*DRRVSSSTTSAMSF
Trigger: AAAACTCATGGCTGATGTGGTAGAAGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 90 bp TTTGCTGGAACACACTGGGGGACAGCAGGACTGAAGATACTGCTGTaGTGGTTGCAGGAACCAATGGAGAGCCTGCAATCGGGATGGCAC +
Preference number: 5 (lower is better)
Translates to: FAGTHWGTAGLKILL*WLQEPMESLQSGWH
Trigger: GTGCCATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS TCA 90 bp TTCCAAGCGGCTGTGCTTGTATTTGGTCATGCTGTGGGGTCAACCTaGGTTTCTGAAGCAGATCAACGCTTGGGAGGGCTGTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: FQAAVLVFGHAVGST*VSEADQRLGGLCQL
Trigger: CAGCTGGCACAGCCCTCCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGCATGACCAAATACAAGCACAGCCGCTTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS CCA 90 bp TCAGATGTTTATGACCAGACGGAGCAGACCTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCAGGATATCTATGGGCCTCTGGTCGC +
Preference number: 5 (lower is better)
Translates to: SDVYDQTEQTSHTHP*PGSASPGYLWASGR
Trigger: GCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAGGTCTGCTCCGTCTGGTCATAAACATCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223658.2
CDS-3UTR CAA 90 bp GCTGTAGCCCAGGACTGGAGATATTTGAGCCGCCCATCTGATTCTCTGGTCCTCCGCCAGACTCATCTCTaGCTCAGCTCGACTCAACAA +
Preference number: 5 (lower is better)
Translates to: AVAQDWRYLSRPSDSLVLRQTHL*LSSTQQ
Trigger: TTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCG...GAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTGGGCTACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp GTGGCCTTCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATCAGGACTGGAGATATTaGAGCCGCCCATCTGATTCC +
Preference number: 5 (lower is better)
Translates to: VAFKAHCKVLCSDRSILDQDWRY*SRPSDS
Trigger: GGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTG...ATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGAAGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATACCCATAGCTGTTGGTaGTTCCTTTGGCAAGGAGGT +
Preference number: 5 (lower is better)
Translates to: SCSMRKPACLEADPLPSHTHSCW*FLWQGG
Trigger: ACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGT...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCTCCAAGCGGCTGTGCTaGTATTTGGTCATGCTGTGG +
Preference number: 5 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGSKRLC*YLVMLW
Trigger: CCACAGCATGACCAAATACAAGCACAGCCGCTTGGA...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp ACATCCTTACGGACAAGGCTCTCAGGCTCCTCAAGCTCCATGCTCTGCTTAGCTGATATAGGGGTCGTGTaGTTTCAAGGCCGCCAGACT +
Preference number: 5 (lower is better)
Translates to: TSLRTRLSGSSSSMLCLADIGVV*FQGRQT
Trigger: AGTCTGGCGGCCTTGAAACAACACGACCCCTATATC...AGCTAAGCAGAGCATGGAGCTTGAGGAGCCTGAGAGCCTTGTCCGTAAGGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GATCAGCACTGGGGTGCTGACTTCAGGCTGAACTGTGTGGTGAGCGGCAGAATGTGCATGTTCAGTCGGTaGACAATGGTAAAGCCATGG +
Preference number: 5 (lower is better)
Translates to: DQHWGADFRLNCVVSGRMCMFSR*TMVKPW
Trigger: CCATGGCTTTACCATTGTCAACCGACTGAACATGCA...CATTCTGCCGCTCACCACACAGTTCAGCCTGAAGTCAGCACCCCAGTGCTGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp AGTGGAGATTTCTGCCTGGGTGTGGTCTTTACTGCTTGTATCATGGTGCTATTCTGGTCGCTGCAGCCATaGGCCTGGCTGGGACTCTGT +
Preference number: 5 (lower is better)
Translates to: SGDFCLGVVFTACIMVLFWSLQP*AWLGLC
Trigger: ACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCA...GAATAGCACCATGATACAAGCAGTAAAGACCACACCCAGGCAGAAATCTCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp CCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAACAGGGCACCCATAGCTGTTGGTaGTTCCTTTGGCAAGGAGGT +
Preference number: 5 (lower is better)
Translates to: PTVRCSAQTGAFWILEQGTHSCW*FLWQGG
Trigger: ACCTCCTTGCCAAAGGAACAACCAACAGCTATGGGT...GCCCTGTTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp CATGGTTCCTTTTCCAAGCGGCTGTGCTTGTATTTGGTCATGCTGTaGGGTCAACCTGAGTTTCTGAAGCAGATCAACGCTTGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: HGSFSKRLCLYLVML*GQPEFLKQINAWEG
Trigger: GCCCTCCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGCATGACCAAATACAAGCACAGCCGCTTGGAAAAGGAACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp ATCACTGAGAACGTCTCTAGGAAACATCCTTACGGACAAGGCTCTCAGGCTCCTTCCCACTGGTTGGCTTaGGGGCAGAAAGTGTACAGG +
Preference number: 5 (lower is better)
Translates to: ITENVSRKHPYGQGSQAPSHWLA*GQKVYR
Trigger: CCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGGA...AGGAGCCTGAGAGCCTTGTCCGTAAGGATGTTTCCTAGAGACGTTCTCAGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp AGCTGTTCCATGAGGAAGCCTGCGTGTCTTGAGGCGGACCCTCTCCCTTCACATCTGTTGGTTGTTCCTTaGGCAAGGAGGTTCCAAATA +
Preference number: 5 (lower is better)
Translates to: SCSMRKPACLEADPLPSHLLVVP*ARRFQI
Trigger: TATTTGGAACCTCCTTGCCAAAGGAACAACCAACAG...ATGTGAAGGGAGAGGGTCCGCCTCAAGACACGCAGGCTTCCTCATGGAACAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 90 bp CTGGGTAACACCTTAGGCTGGGAAAATACTTCAGGATCCTGGTTTTaGTGCATAGACTGGAGGGTTGGAGCAAGCACCATGTTGCTCAGG +
Preference number: 5 (lower is better)
Translates to: LGNTLGWENTSGSWF*CIDWRVGASTMLLR
Trigger: CCTGAGCAACATGGTGCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp AATGGAGAGCCTGCAATCGGGATGGCACTGGGTAACACCTTAGGCTaGGAAAATACTTCAGGATCCTGGTTTTGCTGCATAGACTGGAGG +
Preference number: 5 (lower is better)
Translates to: NGEPAIGMALGNTLG*ENTSGSWFCCIDWR
Trigger: CCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACCCAGTGCCATCCCGATTGCAGGCTCTCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TGGAGATATTTGAGCCGCCCATCTGATTCTCTGGTCCTCATGCTTGTACAGCAATCCCACTGGTTGGCTTaGGGGCAGAAAGTGTACAGG +
Preference number: 5 (lower is better)
Translates to: WRYLSRPSDSLVLMLVQQSHWLA*GQKVYR
Trigger: CCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGGA...TTGCTGTACAAGCATGAGGACCAGAGAATCAGATGGGCGGCTCAAATATCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS-3UTR CAA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGCTGTTGGTTGTTCCTTaGGCAAGGAGGTTCCAAATA +
Preference number: 5 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRLLVVP*ARRFQI
Trigger: TATTTGGAACCTCCTTGCCAAAGGAACAACCAACAG...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CCTGGTCCTCATGGAAACTCTCCTCGTGAGTGGCCTTCAAAGCCCACTGTAAGGTGTGGTCTTTACTGCTaGTATCATGGTGCTATTCCG +
Preference number: 5 (lower is better)
Translates to: PGPHGNSPREWPSKPTVRCGLYC*YHGAIP
Trigger: CGGAATAGCACCATGATACAAGCAGTAAAGACCACA...CCTTACAGTGGGCTTTGAAGGCCACTCACGAGGAGAGTTTCCATGAGGACCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp ATGGCACTGGGTAACACCTTAGGCTGGGAAAATACTTCAGGATCCTaGTTTTGCTGCATAGACTGGAGGGTTGGAGCAAGCACCATGTTG +
Preference number: 5 (lower is better)
Translates to: MALGNTLGWENTSGS*FCCIDWRVGASTML
Trigger: CAACATGGTGCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACCCAGTGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTTGGTCGCTGCAGCCATaGGCCTGGCTGGGACTCTGT +
Preference number: 5 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGWSLQP*AWLGLC
Trigger: ACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCA...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTCAGGGGTGGCCAGTaGGCCAGCTGCCGAAGAAAA +
Preference number: 5 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLLRGGQ*ASCRRK
Trigger: TTTTCTTCGGCAGCTGGCCAACTGGCCACCCCTGAG...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCGGAGCAAGCACCATGTaGCTCAGGGAGGCTGAGACT +
Preference number: 5 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGGASTM*LREAET
Trigger: AGTCTCAGCCTCCCTGAGCAACATGGTGCTTGCTCC...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TCAAAGCCCACTGTAAGGTGCTCTGCTCAGACCGGAGCATTCTGGATTCTTGAATTCAGGATCCTGGTTTaGCTGCATAGACTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: SKPTVRCSAQTGAFWILEFRILV*LHRLEG
Trigger: ACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAA...TTCAAGAATCCAGAATGCTCCGGTCTGAGCAGAGCACCTTACAGTGGGCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp ACGTACAGCAACAACACGTGTCTTAAAGATTCACAGATAAAAGGGAAACACAACTGGTCGCTGCAGCCATaGGCCTGGCTGGGACTCTGT +
Preference number: 5 (lower is better)
Translates to: TYSNNTCLKDSQIKGKHNWSLQP*AWLGLC
Trigger: ACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCA...GTTGTGTTTCCCTTTTATCTGTGAATCTTTAAGACACGTGTTGTTGCTGTACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTAGTGGGAGTGTGTAGCTaGGGGGATGTTTGTCACCCG +
Preference number: 5 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLVGVCS*GDVCHP
Trigger: CGGGTGACAAACATCCCCCAAGCTACACACTCCCAC...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGGGAGCAAGCACCATGTaGCTCAGGGAGGCTGAGACT +
Preference number: 5 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKGASTM*LREAET
Trigger: AGTCTCAGCCTCCCTGAGCAACATGGTGCTTGCTCC...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CAA 90 bp ATCACTGAGAACGTCTCTAGGAAACATCCTTACGGACAAGGCTCTCAGGCTCCTAGGTTGTGGTTGTCTTaGTTCTTGGTCAGAACCTGC +
Preference number: 5 (lower is better)
Translates to: ITENVSRKHPYGQGSQAPRLWLS*FLVRTC
Trigger: GCAGGTTCTGACCAAGAACAAAGACAACCACAACCT...AGGAGCCTGAGAGCCTTGTCCGTAAGGATGTTTCCTAGAGACGTTCTCAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCGCCAGACTCATCTCTaGCTCAGCTCGACTCAACAA +
Preference number: 5 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGRQTHL*LSSTQQ
Trigger: TTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCG...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGCTCTCATACTCATCCTaGGCCCGGCTCAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRLSYSS*ARLSIS
Trigger: GGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAG...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTTCAGGATCCTGGTTTaGCTGCATAGACTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: GTLSFMLHYQCYNGSYGLFRILV*LHRLEG
Trigger: ACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAA...GAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCATACTGCTGTGGTGGTaGCAGGAACCAATGGAGAGC +
Preference number: 5 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGILLWW*QEPMES
Trigger: GCTCTCCATTGGTTCCTGCAACCACCACAGCAGTAT...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACGGAACACAAAGACGCCAGACTCATCTCTaGCTCAGCTCGACTCAACAA +
Preference number: 5 (lower is better)
Translates to: LHYQCYNGSYGLYYGTQRRQTHL*LSSTQQ
Trigger: TTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCG...TCTTTGTGTTCCGTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGTCCCACTGGTTGGCTTaGGGGCAGAAAGTGTACAGG +
Preference number: 5 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRSHWLA*GQKVYR
Trigger: CCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGGA...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGCGGCTGTGCTTGTATTaGGTCATGCTGTGGGGTCAA +
Preference number: 5 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKRLCLY*VMLWGQ
Trigger: TTGACCCCACAGCATGACCAAATACAAGCACAGCCG...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS-3UTR CAA 90 bp TTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACGATATAGGGGTCGTGTaGTTTCAAGGCCGCCAGACT +
Preference number: 5 (lower is better)
Translates to: LSFMLHYQCYNGSYGLYYDIGVV*FQGRQT
Trigger: AGTCTGGCGGCCTTGAAACAACACGACCCCTATATC...GTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCTGCATGTTCAGTCGGTaGACAATGGTAAAGCCATGG +
Preference number: 5 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGCMFSR*TMVKPW
Trigger: CCATGGCTTTACCATTGTCAACCGACTGAACATGCA...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTACTACCAGGACTGGAGATATTaGAGCCGCCCATCTGATTCC +
Preference number: 5 (lower is better)
Translates to: LSFMLHYQCYNGSYGLYYQDWRY*SRPSDS
Trigger: GGAATCAGATGGGCGGCTCAAATATCTCCAGTCCTG...GTAGTAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp ACGTCACTCAACACAATGGTCTCTTGTTGTTTTGTCAAACAAAGGTTTGCTGGTCGGCTGTGCTTGTATTaGGTCATGCTGTGGGGTCAA +
Preference number: 5 (lower is better)
Translates to: TSLNTMVSCCFVKQRFAGRLCLY*VMLWGQ
Trigger: TTGACCCCACAGCATGACCAAATACAAGCACAGCCG...ACCAGCAAACCTTTGTTTGACAAAACAACAAGAGACCATTGTGTTGAGTGACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CTTCAAAGTGATCTGTATTGCATTGCAGCGTTTGAAAGAGTGAAGTCAAATCGGATACTGCTGTGGTGGTaGCAGGAACCAATGGAGAGC +
Preference number: 5 (lower is better)
Translates to: LQSDLYCIAAFERVKSNRILLWW*QEPMES
Trigger: GCTCTCCATTGGTTCCTGCAACCACCACAGCAGTAT...CCGATTTGACTTCACTCTTTCAAACGCTGCAATGCAATACAGATCACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp CACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCCTCTATGCATGTTCAGTCGGTaGACAATGGTAAAGCCATGG +
Preference number: 5 (lower is better)
Translates to: HLEFHVALSVLQWQLRPLCMFSR*TMVKPW
Trigger: CCATGGCTTTACCATTGTCAACCGACTGAACATGCA...TAGAGGCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp GTAGGCACCTTGAGTTTCATGTTGCATTATCAGTGTTACAATGGCAGTTACGGCTGTGGTCTTTACTGCTaGTATCATGGTGCTATTCCG +
Preference number: 5 (lower is better)
Translates to: VGTLSFMLHYQCYNGSYGCGLYC*YHGAIP
Trigger: CGGAATAGCACCATGATACAAGCAGTAAAGACCACA...GCCGTAACTGCCATTGTAACACTGATAATGCAACATGAAACTCAAGGTGCCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS-3UTR CAA 90 bp TGGCCTAGCTTCCTAGAAGTCATGATCTGGAACTTCTGGCTTCTGAATTTTAAGAGGTTGTGGTTGTCTTaGTTCTTGGTCAGAACCTGC +
Preference number: 5 (lower is better)
Translates to: WPSFLEVMIWNFWLLNFKRLWLS*FLVRTC
Trigger: GCAGGTTCTGACCAAGAACAAAGACAACCACAACCT...CTTAAAATTCAGAAGCCAGAAGTTCCAGATCATGACTTCTAGGAAGCTAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022535.9
CDS TCA 90 bp CTTTGTTCTTGGTCAGAACCTGCAAGTAAACTGCATGAAGCGTACTaGGGAAGCTGGAGTCATTCTTTATTAGGTGTATCAGTGTGTCCT +
Preference number: 5 (lower is better)
Translates to: LCSWSEPASKLHEAY*GSWSHSLLGVSVCP
Trigger: AGGACACACTGATACACCTAATAAAGAATGACTCCAGCTTCCTCAGTACGCTTCATGCAGTTTACTTGCAGGTTCTGACCAAGAACAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 90 bp CAGAAGAAATGGTTCATGGAGCTGAAATTCCAAATCTTTATTCACTaGCTCAACCAGATTGTGCATGTTCAGTCGGTTGACAATGGTAAA +
Preference number: 5 (lower is better)
Translates to: QKKWFMELKFQIFIH*LNQIVHVQSVDNGK
Trigger: TTTACCATTGTCAACCGACTGAACATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTGGAATTTCAGCTCCATGAACCATTTCTTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CAA 90 bp GCCGCCAGACTCATCTCTTGCTCAGCTCGACTCAACAACTCCATCTaGGATCTCAGAGCCGAGCCCCTCCGGCGGGGGCGGACTGTGGAA +
Preference number: 6 (lower is better)
Translates to: AARLISCSARLNNSI*DLRAEPLRRGRTVE
Trigger: TTCCACAGTCCGCCCCCGCCGGAGGGGCTCGGCTCTGAGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 72 bp CATCCTTGGCCCGGCTCAGCATCTCCAGGATATCTATaGGCCTCTGGTCGCTGCAGCCATTGGCCTGGCTGG +
Preference number: 6 (lower is better)
Translates to: HPWPGSASPGYL*ASGRCSHWPGW
Trigger: CCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CAA 72 bp CTCATCTCTTGCTCAGCTCGACTCAACAACTCCATCTaGGATCTCAGAGCCGAGCCCCTCCGGCGGGGGCGG +
Preference number: 6 (lower is better)
Translates to: LISCSARLNNSI*DLRAEPLRRGR
Trigger: CCGCCCCCGCCGGAGGGGCTCGGCTCTGAGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 72 bp GCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTaGGATCGCCGTGTCTCCTCTTCTACCACATCAGCC +
Preference number: 6 (lower is better)
Translates to: AWLGLCLSRAAC*DRRVSSSTTSA
Trigger: GGCTGATGTGGTAGAAGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CAA 90 bp CTCAGCATCTCCAGGATATCTATGGGCCTCTGGTCGCTGCAGCCATaGGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTGGGAT +
Preference number: 6 (lower is better)
Translates to: LSISRISMGLWSLQP*AWLGLCLSRAACWD
Trigger: ATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGGAGATGCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 72 bp ATATCTATGGGCCTCTGGTCGCTGCAGCCATTGGCCTaGCTGGGACTCTGTTTATCTCGAGCAGCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: ISMGLWSLQPLA*LGLCLSRAACW
Trigger: CCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 72 bp CCAGGATATCTATGGGCCTCTGGTCGCTGCAGCCATTaGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCT +
Preference number: 6 (lower is better)
Translates to: PGYLWASGRCSH*PGWDSVYLEQP
Trigger: AGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCAGAGGCCCATAGATATCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 72 bp GAAGAAGGCTCTATGAAGCTCTCAGGGGTGGCCAGTTaGCCAGCTGCCGAAGAAAAGCTGGGCGCCATGGTT +
Preference number: 6 (lower is better)
Translates to: EEGSMKLSGVAS*PAAEEKLGAMV
Trigger: AACCATGGCGCCCAGCTTTTCTTCGGCAGCTGGCCAACTGGCCACCCCTGAGAGCTTCATAGAGCCTTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS CAA 90 bp GGAACACACTGGGGGACAGCAGGACTGAAGATACTGCTGTGGTGGTaGCAGGAACCAATGGAGAGCCTGCAATCGGGATGGCACTGGGTA +
Preference number: 6 (lower is better)
Translates to: GTHWGTAGLKILLWW*QEPMESLQSGWHWV
Trigger: TACCCAGTGCCATCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 72 bp TTGGCCTGGCTGGGACTCTGTTTATCTCGAGCAGCCTaGTGGGATCGCCGTGTCTCCTCTTCTACCACATCA +
Preference number: 6 (lower is better)
Translates to: LAWLGLCLSRAA*WDRRVSSSTTS
Trigger: TGATGTGGTAGAAGAGGAGACACGGCGATCCCAGCAGGCTGCTCGAGATAAACAGAGTCCCAGCCAGGCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 72 bp CACTGGGGGACAGCAGGACTGAAGATACTGCTGTGGTaGTTGCAGGAACCAATGGAGAGCCTGCAATCGGGA +
Preference number: 6 (lower is better)
Translates to: HWGTAGLKILLW*LQEPMESLQSG
Trigger: TCCCGATTGCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 72 bp TTCCTCTCTAGGTCTGCGGCCCTGGGAACCGTTTGCTaGAACACACTGGGGGACAGCAGGACTGAAGATACT +
Preference number: 6 (lower is better)
Translates to: FLSRSAALGTVC*NTLGDSRTEDT
Trigger: AGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAACGGTTCCCAGGGCCGCAGACCTAGAGAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CAA 72 bp GTCCCTTCTATATCAGTCTTCTCCCACTGGTTGGCTTaGGGGCAGAAAGTGTACAGGGCGACCTGGCCCGTG +
Preference number: 6 (lower is better)
Translates to: VPSISVFSHWLA*GQKVYRATWPV
Trigger: CACGGGCCAGGTCGCCCTGTACACTTTCTGCCCCAAAGCCAACCAGTGGGAGAAGACTGATATAGAAGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS CCA 72 bp CCAGTTGGCCAGCTGCCGAAGAAAAGCTGGGCGCCATaGTTCCTTTTCCAAGCGGCTGTGCTTGTATTTGGT +
Preference number: 6 (lower is better)
Translates to: PVGQLPKKSWAP*FLFQAAVLVFG
Trigger: ACCAAATACAAGCACAGCCGCTTGGAAAAGGAACCATGGCGCCCAGCTTTTCTTCGGCAGCTGGCCAACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS CCA 72 bp ACACACTGGGGGACAGCAGGACTGAAGATACTGCTGTaGTGGTTGCAGGAACCAATGGAGAGCCTGCAATCG +
Preference number: 6 (lower is better)
Translates to: THWGTAGLKILL*WLQEPMESLQS
Trigger: CGATTGCAGGCTCTCCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 72 bp TATGACCAGACGGAGCAGACCTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCAGGATATCTATGGGCC +
Preference number: 6 (lower is better)
Translates to: YDQTEQTSHTHP*PGSASPGYLWA
Trigger: GGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAGGTCTGCTCCGTCTGGTCATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223658.2
CDS TCA 72 bp AACCGTTTGCTGGAACACACTGGGGGACAGCAGGACTaGAGATACTGCTGTGGTGGTTGCAGGAACCAATGG +
Preference number: 6 (lower is better)
Translates to: NRLLEHTGGQQD*RYCCGGCRNQW
Trigger: CCATTGGTTCCTGCAACCACCACAGCAGTATCTTCAGTCCTGCTGTCCCCCAGTGTGTTCCAGCAAACGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS TCA 72 bp GCTGTGCTTGTATTTGGTCATGCTGTGGGGTCAACCTaGGTTTCTGAAGCAGATCAACGCTTGGGAGGGCTG +
Preference number: 6 (lower is better)
Translates to: AVLVFGHAVGST*VSEADQRLGGL
Trigger: CAGCCCTCCCAAGCGTTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGCATGACCAAATACAAGCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS GCA 72 bp GGGTCGTGTTGTTTCAAGGCCGCCAGACTCATCTCTTaGTCAGCTCGACTCAACAACTCCATCTTGGATCTC +
Preference number: 6 (lower is better)
Translates to: GSCCFKAARLIS*SARLNNSILDL
Trigger: GAGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGGCCTTGAAACAACACGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CAA 72 bp GGGGTCGTGTTGTTTCAAGGCCGCCAGACTCATCTCTaGCTCAGCTCGACTCAACAACTCCATCTTGGATCT +
Preference number: 6 (lower is better)
Translates to: GVVLFQGRQTHL*LSSTQQLHLGS
Trigger: AGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGGCCTTGAAACAACACGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CAA 90 bp GGTGATATAGGGGTCGTGTTGTTTCAAGGCCGCCAGACTCATCTCTaGCTCAGCTCGACTCAACAACTCCATCTTGGATCTCAGAGCCGA +
Preference number: 6 (lower is better)
Translates to: GDIGVVLFQGRQTHL*LSSTQQLHLGSQSR
Trigger: TCGGCTCTGAGATCCAAGATGGAGTTGTTGAGTCGAGCTGAGCAAGAGATGAGTCTGGCGGCCTTGAAACAACACGACCCCTATATCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CAA 90 bp AAAGCTGGGCGCCATGGTTCCTTTTCCAAGCGGCTGTGCTTGTATTaGGTCATGCTGTGGGGTCAACCTGAGTTTCTGAAGCAGATCAAC +
Preference number: 6 (lower is better)
Translates to: KAGRHGSFSKRLCLY*VMLWGQPEFLKQIN
Trigger: GTTGATCTGCTTCAGAAACTCAGGTTGACCCCACAGCATGACCAAATACAAGCACAGCCGCTTGGAAAAGGAACCATGGCGCCCAGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
CDS CCA 72 bp ATTTCACTAGAGGAGAAACCCTCTCATACTCATCCTTaGCCCGGCTCAGCATCTCCAGGATATCTATGGGCC +
Preference number: 6 (lower is better)
Translates to: ISLEEKPSHTHP*PGSASPGYLWA
Trigger: GGCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAGGGTTTCTCCTCTAGTGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS CAA 72 bp CATTTCACTAGAGGAGAAACCCTCTCATACTCATCCTaGGCCCGGCTCAGCATCTCCAGGATATCTATGGGC +
Preference number: 6 (lower is better)
Translates to: HFTRGETLSYSS*ARLSISRISMG
Trigger: GCCCATAGATATCCTGGAGATGCTGAGCCGGGCCAAGGATGAGTATGAGAGGGTTTCTCCTCTAGTGAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225286.2
CDS CCA 72 bp GGTAACACCTTAGGCTGGGAAAATACTTCAGGATCCTaGTTTTGCTGCATAGACTGGAGGGTTGGAGCAAGC +
Preference number: 6 (lower is better)
Translates to: GNTLGWENTSGS*FCCIDWRVGAS
Trigger: GCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CCA 72 bp CCTGCAATCGGGATGGCACTGGGTAACACCTTAGGCTaGGAAAATACTTCAGGATCCTGGTTTTGCTGCATA +
Preference number: 6 (lower is better)
Translates to: PAIGMALGNTLG*ENTSGSWFCCI
Trigger: TATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTGTTACCCAGTGCCATCCCGATTGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS CAA 72 bp CACCTTAGGCTGGGAAAATACTTCAGGATCCTGGTTTaGCTGCATAGACTGGAGGGTTGGAGCAAGCACCAT +
Preference number: 6 (lower is better)
Translates to: HLRLGKYFRILV*LHRLEGWSKHH
Trigger: ATGGTGCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 72 bp TTAGGCTGGGAAAATACTTCAGGATCCTGGTTTTGCTaGATAGACTGGAGGGTTGGAGCAAGCACCATGTTG +
Preference number: 6 (lower is better)
Translates to: LGWENTSGSWFC*IDWRVGASTML
Trigger: CAACATGGTGCTTGCTCCAACCCTCCAGTCTATGCAGCAAAACCAGGATCCTGAAGTATTTTCCCAGCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 72 bp CCGTGTCTCCTCTTCTACCACATCAGCCATGAGTTTTaGTATGCGATGACAGTCATTCTTGTCATAGAACCA +
Preference number: 6 (lower is better)
Translates to: PCLLFYHISHEF*YAMTVILVIEP
Trigger: TGGTTCTATGACAAGAATGACTGTCATCGCATAGCAAAACTCATGGCTGATGTGGTAGAAGAGGAGACACGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS TCA 72 bp TGGTCAGAACCTGCAAGTAAACTGCATGAAGCGTACTaGGGAAGCTGGAGTCATTCTTTATTAGGTGTATCA +
Preference number: 6 (lower is better)
Translates to: WSEPASKLHEAY*GSWSHSLLGVS
Trigger: TGATACACCTAATAAAGAATGACTCCAGCTTCCTCAGTACGCTTCATGCAGTTTACTTGCAGGTTCTGACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022535.9
ENSMUST00000225196.2
CDS GCA 72 bp AATTCCAAATCTTTATTCACTGGCTCAACCAGATTGTaGATGTTCAGTCGGTTGACAATGGTAAAGCCATGG +
Preference number: 6 (lower is better)
Translates to: NSKSLFTGSTRL*MFSRLTMVKPW
Trigger: CCATGGCTTTACCATTGTCAACCGACTGAACATGCACAATCTGGTTGAGCCAGTGAATAAAGATTTGGAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2
CDS TCA 72 bp CTTGCATTTCTATACAGAAGAAATGGTTCATGGAGCTaGAATTCCAAATCTTTATTCACTGGCTCAACCAGA +
Preference number: 6 (lower is better)
Translates to: LAFLYRRNGSWS*NSKSLFTGSTR
Trigger: TCTGGTTGAGCCAGTGAATAAAGATTTGGAATTTCAGCTCCATGAACCATTTCTTCTGTATAGAAATGCAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022535.9
ENSMUST00000223658.2
ENSMUST00000225196.2
ENSMUST00000225286.2