Pregenerated sensors for DCN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019929Ensembl transcript IDs: ENSMUST00000105287.11, ENSMUST00000163448.4
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCACCTGGATATACTTATaGTGTGCCAGCCCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFTWIYL*CASPAG Trigger: GCCTGCTGGGCTGGCACAGCATAAGTATATCCAGGT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTGATATACTTATGCTGTaGCAGCCCAGCAGGCACCCT | + |
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Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFDILML*QPSRHP Trigger: AGGGTGCCTGCTGGGCTGGCACAGCATAAGTATATC...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTACCTGGATATACTTATaGTGTGCCAGCCCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFTWIYL*CASPAG Trigger: GCCTGCTGGGCTGGCACAGCATAAGTATATCCAGGT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR TCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCATTTCCGCAGCTTGGTaGTCTCATTCTCATGGACAC | + |
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Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFISAAW*SHSHGH Trigger: GTGTCCATGAGAATGAGATCACCAAGCTGCGGAAAT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR TCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTGCCGCCCAGTTCTATaGCAAGCACATTGTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFCRPVL*QAHCSV Trigger: GACTGAACAATGTGCTTGTCATAGAACTGGGCGGCA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTCGGCAGAAGTCATTTTaGCCAACTGCGGAGATGTTG | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFRQKSF*PTAEML Trigger: CAACATCTCCGCAGTTGGGCAAAATGACTTCTGCCG...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTCAGATGAGGAACATTaGCCAGACTGCCATTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFSDEEH*PDCHSP Trigger: TGGAGAATGGCAGTCTGGCCAATGTTCCTCATCTGA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR TCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCCCTCATCTTCTAGCATaGAGTCAAATAAGCCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFPHLLA*SQISLS Trigger: AGAGAGGCTTATTTGACTTCATGCTAGAAGATGAGG...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCGGTCATAAGGGATTATaGCAGAAGCCTCATCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFGHKGL*QKPHLL Trigger: TAGAAGATGAGGCTTCTGGCATAATCCCTTATGACC...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTGTGATCTCATTCTCATaGACACGAAGTTCCTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFVISFS*TRSSWR Trigger: TCTCCAGGAACTTCGTGTCCATGAGAATGAGATCAC...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR TCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTCCTCATCTTCTAGCATaGAGTCAAATAAGCCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFPHLLA*SQISLS Trigger: AGAGAGGCTTATTTGACTTCATGCTAGAAGATGAGG...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR TCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCGCACATAGACACATCTaGAGGTGTTTGGAAAGATTT | + |
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Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFAHRHI*RCLERF Trigger: AAATCTTTCCAAACACCTTCAGATGTGTCTATGTGC...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTGGTCATAAGGGATTATaGCAGAAGCCTCATCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFGHKGL*QKPHLL Trigger: TAGAAGATGAGGCTTCTGGCATAATCCCTTATGACC...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTGTTGGTGTCTGAGATaGGAATGTATGAGAGACTCT | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFCWCLR*ECMRDS Trigger: AGAGTCTCTCATACATTCGCATCTCAGACACCAACA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTGTTGCCATCTAGATaGACTTCAGTGAGAGAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFLLPSR*TSVREV Trigger: TACTTCTCTCACTGAAGTGCATCTAGATGGCAACAA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCAGGTTTGAATGCCTCTaGACTGATTTTGCTGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFRFECL*TDFADL Trigger: AAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CCA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCACATCTGAAGGTGTTTaGAAAGATTTCCCAATACCG | + |
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Preference number: 4 (lower is better) Translates to: SHVEKACTVCLNFQNLAFTSEGV*KDFPIP Trigger: CGGTATTGGGAAATCTTTCCAAACACCTTCAGATGT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR GCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTTGTTGCCATCTAGATaGACTTCAGTGAGAGAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFLLPSR*TSVREV Trigger: TACTTCTCTCACTGAAGTGCATCTAGATGGCAACAA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CCA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTACATCTGAAGGTGTTTaGAAAGATTTCCCAATACCG | + |
|
Preference number: 4 (lower is better) Translates to: HVEKACTVCLNFQNLAFFTSEGV*KDFPIP Trigger: CGGTATTGGGAAATCTTTCCAAACACCTTCAGATGT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS TCA 90 bp | TTGTTGCCATCTAGATGCACTTCAGTGAGAGAAGTAGGCAGACCTTaGGGGATCGCAGTTATGTTGGTGTCTGAGATGCGAATGTATGAG | + |
|
Preference number: 5 (lower is better) Translates to: LLPSRCTSVREVGRP*GIAVMLVSEMRMYE Trigger: CTCATACATTCGCATCTCAGACACCAACATAACTGCGATCCCTCAAGGTCTGCCTACTTCTCTCACTGAAGTGCATCTAGATGGCAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CCA 90 bp | TCCAAGTTGAATGGCAGAACGCACATAGACACATCTGAAGGTGTTTaGAAAGATTTCCCAATACCGGACAGGGTTGCCGTAAAGACTCAC | + |
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Preference number: 5 (lower is better) Translates to: SKLNGRTHIDTSEGV*KDFPIPDRVAVKTH Trigger: GTGAGTCTTTACGGCAACCCTGTCCGGTATTGGGAAATCTTTCCAAACACCTTCAGATGTGTCTATGTGCGTTCTGCCATTCAACTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS TCA 90 bp | TGTCAGGGTCATAAGGGATTATGCCAGAAGCCTCATCTTCTAGCATaGAGTCAAATAAGCCTCTCTGTTCAAATGGTCCAGCCCAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: CQGHKGLCQKPHLLA*SQISLSVQMVQPKR Trigger: TCTCTTGGGCTGGACCATTTGAACAGAGAGGCTTATTTGACTTCATGCTAGAAGATGAGGCTTCTGGCATAATCCCTTATGACCCTGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS TCA 90 bp | ACTTGTAGTTTCCAAGTTGAATGGCAGAACGCACATAGACACATCTaGAGGTGTTTGGAAAGATTTCCCAATACCGGACAGGGTTGCCGT | + |
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Preference number: 5 (lower is better) Translates to: TCSFQVEWQNAHRHI*RCLERFPNTGQGCR Trigger: ACGGCAACCCTGTCCGGTATTGGGAAATCTTTCCAAACACCTTCAGATGTGTCTATGTGCGTTCTGCCATTCAACTTGGAAACTACAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTCCAGCCCAAGAGACTaGTGCCAGAAGGAAGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFSSPRD*CQKEED Trigger: ATCTTCTTCCTTCTGGCACAAGTCTCTTGGGCTGGA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCACCCTGAGGAGTTTGTaGTTGTCCAAGTGGAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFTLRSL*LSKWSS Trigger: GGAACTCCACTTGGACAACAACAAACTCCTCAGGGT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTCGGATTTCCGCAGCTaGGTGATCTCATTCTCATGG | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFSDFRS*VISFSW Trigger: CCATGAGAATGAGATCACCAAGCTGCGGAAATCCGA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCAGAAGTAGGCAGACCTaGAGGGATCGCAGTTATGTT | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFRSRQT*RDRSYV Trigger: AACATAACTGCGATCCCTCAAGGTCTGCCTACTTCT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTCTGAGGAGTTTGTTGTaGTCCAAGTGGAGTTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFLRSLL*SKWSSL Trigger: GAGGGAACTCCACTTGGACAACAACAAACTCCTCAG...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTACCCTGAGGAGTTTGTaGTTGTCCAAGTGGAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFTLRSL*LSKWSS Trigger: GGAACTCCACTTGGACAACAACAAACTCCTCAGGGT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CCA 90 bp | AGACAGGTAAAGCCTTTCCAACTTCACGAGAGGTTTGAATGCCTCTaGACTGATTTTGCTGATCTTGTTGTTGACAAGGATCAAGGTATG | + |
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Preference number: 5 (lower is better) Translates to: RQVKPFQLHERFECL*TDFADLVVDKDQGM Trigger: CATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTTGGAAAGGCTTTACCTGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTAGAAGTAGGCAGACCTaGAGGGATCGCAGTTATGTT | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFRSRQT*RDRSYV Trigger: AACATAACTGCGATCCCTCAAGGTCTGCCTACTTCT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTCAACCTTGGTGATCTaGTTGCCATCTAGATGCACT | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFSTLVI*LPSRCT Trigger: AGTGCATCTAGATGGCAACAAGATCACCAAGGTTGA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS GCA 90 bp | GTTCTTAGACAGGTAAAGCCTTTCCAACTTCACGAGAGGTTTGAATaGCTCTGGACTGATTTTGCTGATCTTGTTGTTGACAAGGATCAA | + |
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Preference number: 5 (lower is better) Translates to: VLRQVKPFQLHERFE*LWTDFADLVVDKDQ Trigger: TTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTTGGAAAGGCTTTACCTGTCTAAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTGCTGATCTTGTTGTaGACAAGGATCAAGGTATGC | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFLLILL*TRIKVC Trigger: GCATACCTTGATCCTTGTCAACAACAAGATCAGCAA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTCTATGACAAGCACATaGTTCAGTCCATTGAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFSMTST*FSPLKS Trigger: CGACTTCAATGGACTGAACAATGTGCTTGTCATAGA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTACCTTGGTGATCTTGTaGCCATCTAGATGCACTTCA | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFTLVIL*PSRCTS Trigger: TGAAGTGCATCTAGATGGCAACAAGATCACCAAGGT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTTGCTGATCTTGTTGTaGACAAGGATCAAGGTATGC | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFLLILL*TRIKVC Trigger: GCATACCTTGATCCTTGTCAACAACAAGATCAGCAA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCCTGATTTTGCTGATCTaGTTGTTGACAAGGATCAAG | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFLILLI*LLTRIK Trigger: CTTGATCCTTGTCAACAACAAGATCAGCAAAATCAG...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCATCTCTGTAATTTTGTaGTTTTGCAGGTCTAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFISVIL*FCRSSK Trigger: CTTGCTAGACCTGCAAAACAACAAAATTACAGAGAT...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | AGTCATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTGATCTCTGTAATTTaGTTGTTTTGCAGGTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: SHVEKACTVCLNFQNLAFLISVI*LFCRSS Trigger: GCTAGACCTGCAAAACAACAAAATTACAGAGATCAA...GAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTCTGATTTTGCTGATCTaGTTGTTGACAAGGATCAAG | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFLILLI*LLTRIK Trigger: CTTGATCCTTGTCAACAACAAGATCAGCAAAATCAG...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTATCTCTGTAATTTTGTaGTTTTGCAGGTCTAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFISVIL*FCRSSK Trigger: CTTGCTAGACCTGCAAAACAACAAAATTACAGAGAT...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS-3UTR CAA 90 bp | CATGTGGAAAAGGCATGCACAGTGTGCTTGAATTTCCAGAATCTAGCATTCTTTTTGATCTCTGTAATTTaGTTGTTTTGCAGGTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: HVEKACTVCLNFQNLAFFLISVI*LFCRSS Trigger: GCTAGACCTGCAAAACAACAAAATTACAGAGATCAA...AAAGAATGCTAGATTCTGGAAATTCAAGCACACTGTGCATGCCTTTTCCACATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | GTAGGAAGCCTTTCGAGAGGGGTGTCCAGCTCGGCAGAAGTCATTTaGCCCAACTGCGGAGATGTTGTTGTTGTGAAGGTAGACGACCTG | + |
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Preference number: 6 (lower is better) Translates to: VGSLSRGVSSSAEVI*PNCGDVVVVKVDDL Trigger: CAGGTCGTCTACCTTCACAACAACAACATCTCCGCAGTTGGGCAAAATGACTTCTGCCGAGCTGGACACCCCTCTCGAAAGGCTTCCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AGCAAGGTTGTGTCGGGTGGAAAATCCCAGGGCACTTaGTCCAAACCCAGATCAGAACACTGCACCACTCGA | + |
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Preference number: 6 (lower is better) Translates to: SKVVSGGKSQGT*SKPRSEHCTTR Trigger: TCGAGTGGTGCAGTGTTCTGATCTGGGTTTGGACAAAGTGCCCTGGGATTTTCCACCCGACACAACCTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS GCA 72 bp | GTTGTGAAGGTAGACGACCTGGATATACTTATGCTGTaGCAGCCCAGCAGGCACCCTGAGGAGTTTGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: VVKVDDLDILML*QPSRHPEEFVV Trigger: AACAACAAACTCCTCAGGGTGCCTGCTGGGCTGGCACAGCATAAGTATATCCAGGTCGTCTACCTTCACAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | CTTTCGAGAGGGGTGTCCAGCTCGGCAGAAGTCATTTaGCCCAACTGCGGAGATGTTGTTGTTGTGAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: LSRGVSSSAEVI*PNCGDVVVVKV Trigger: TACCTTCACAACAACAACATCTCCGCAGTTGGGCAAAATGACTTCTGCCGAGCTGGACACCCCTCTCGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS GCA 72 bp | AGGTGTTTGGAAAGATTTCCCAATACCGGACAGGGTTaGCGTAAAGACTCACAGCCGAGTAGGAAGCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RCLERFPNTGQG*RKDSQPSRKPF Trigger: GAAAGGCTTCCTACTCGGCTGTGAGTCTTTACGGCAACCCTGTCCGGTATTGGGAAATCTTTCCAAACACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | TTCAGTGGGTTGCCGCCCAGTTCTATGACAAGCACATaGTTCAGTCCATTGAAGTCGGATTTCCGCAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: FSGLPPSSMTST*FSPLKSDFRSL Trigger: CAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGTGCTTGTCATAGAACTGGGCGGCAACCCACTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | CCTTTCAGGCTGGGTGCATCAACCTTGGTGATCTTGTaGCCATCTAGATGCACTTCAGTGAGAGAAGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: PFRLGASTLVIL*PSRCTSVREVG Trigger: GCCTACTTCTCTCACTGAAGTGCATCTAGATGGCAACAAGATCACCAAGGTTGATGCACCCAGCCTGAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | AGTGGGTTGCCGCCCAGTTCTATGACAAGCACATTGTTCAGTCCATaGAAGTCGGATTTCCGCAGCTTGGTGATCTCATTCTCATGGACA | + |
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Preference number: 6 (lower is better) Translates to: SGLPPSSMTSTLFSP*KSDFRSLVISFSWT Trigger: TGTCCATGAGAATGAGATCACCAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGTGCTTGTCATAGAACTGGGCGGCAACCCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | CCAGAGTTTTTCAGTGGGTTGCCGCCCAGTTCTATGACAAGCACATaGTTCAGTCCATTGAAGTCGGATTTCCGCAGCTTGGTGATCTCA | + |
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Preference number: 6 (lower is better) Translates to: PEFFSGLPPSSMTST*FSPLKSDFRSLVIS Trigger: TGAGATCACCAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGTGCTTGTCATAGAACTGGGCGGCAACCCACTGAAAAACTCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS TCA 72 bp | AGGAGTTTGTTGTTGTCCAAGTGGAGTTCCCTCAGATaGGGAACATTGGCCAGACTGCCATTCTCCATAACG | + |
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Preference number: 6 (lower is better) Translates to: RSLLLSKWSSLR*GTLARLPFSIT Trigger: CGTTATGGAGAATGGCAGTCTGGCCAATGTTCCTCATCTGAGGGAACTCCACTTGGACAACAACAAACTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | CCGCCCAGTTCTATGACAAGCACATTGTTCAGTCCATaGAAGTCGGATTTCCGCAGCTTGGTGATCTCATTC | + |
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Preference number: 6 (lower is better) Translates to: PPSSMTSTLFSP*KSDFRSLVISF Trigger: GAATGAGATCACCAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGTGCTTGTCATAGAACTGGGCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | ATGACAAGCACATTGTTCAGTCCATTGAAGTCGGATTTCCGCAGCTaGGTGATCTCATTCTCATGGACACGAAGTTCCTGGAGAGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: MTSTLFSPLKSDFRS*VISFSWTRSSWRVL Trigger: CAGAACTCTCCAGGAACTTCGTGTCCATGAGAATGAGATCACCAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGTGCTTGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CCA 72 bp | AAGTCGGATTTCCGCAGCTTGGTGATCTCATTCTCATaGACACGAAGTTCCTGGAGAGTTCTGGGCATTTTT | + |
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Preference number: 6 (lower is better) Translates to: KSDFRSLVISFS*TRSSWRVLGIF Trigger: AAAAATGCCCAGAACTCTCCAGGAACTTCGTGTCCATGAGAATGAGATCACCAAGCTGCGGAAATCCGACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CCA 72 bp | AATGGCAGAACGCACATAGACACATCTGAAGGTGTTTaGAAAGATTTCCCAATACCGGACAGGGTTGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: NGRTHIDTSEGV*KDFPIPDRVAV Trigger: TACGGCAACCCTGTCCGGTATTGGGAAATCTTTCCAAACACCTTCAGATGTGTCTATGTGCGTTCTGCCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | ACATTGTTCAGTCCATTGAAGTCGGATTTCCGCAGCTaGGTGATCTCATTCTCATGGACACGAAGTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: TLFSPLKSDFRS*VISFSWTRSSW Trigger: CCAGGAACTTCGTGTCCATGAGAATGAGATCACCAAGCTGCGGAAATCCGACTTCAATGGACTGAACAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AAGGCTCCGTTTTCAATCCCAGAGTTTTTCAGTGGGTaGCCGCCCAGTTCTATGACAAGCACATTGTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: KAPFSIPEFFSG*PPSSMTSTLFS Trigger: ACTGAACAATGTGCTTGTCATAGAACTGGGCGGCAACCCACTGAAAAACTCTGGGATTGAAAACGGAGCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AGTCCTTTCAGGCTGGGTGCATCAACCTTGGTGATCTaGTTGCCATCTAGATGCACTTCAGTGAGAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SPFRLGASTLVI*LPSRCTSVREV Trigger: TACTTCTCTCACTGAAGTGCATCTAGATGGCAACAAGATCACCAAGGTTGATGCACCCAGCCTGAAAGGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | AAATTAATCAGTCCTTTCAGGCTGGGTGCATCAACCTTGGTGATCTaGTTGCCATCTAGATGCACTTCAGTGAGAGAAGTAGGCAGACCT | + |
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Preference number: 6 (lower is better) Translates to: KLISPFRLGASTLVI*LPSRCTSVREVGRP Trigger: AGGTCTGCCTACTTCTCTCACTGAAGTGCATCTAGATGGCAACAAGATCACCAAGGTTGATGCACCCAGCCTGAAAGGACTGATTAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | AGCCTTTCCAACTTCACGAGAGGTTTGAATGCCTCTGGACTGATTTaGCTGATCTTGTTGTTGACAAGGATCAAGGTATGCAAGTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SLSNFTRGLNASGLI*LILLLTRIKVCKSF Trigger: GAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTTGGAAAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS TCA 72 bp | TTCCAAGTTGAATGGCAGAACGCACATAGACACATCTaGAGGTGTTTGGAAAGATTTCCCAATACCGGACAG | + |
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Preference number: 6 (lower is better) Translates to: FQVEWQNAHRHI*RCLERFPNTGQ Trigger: CTGTCCGGTATTGGGAAATCTTTCCAAACACCTTCAGATGTGTCTATGTGCGTTCTGCCATTCAACTTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS GCA 72 bp | CAGGTAAAGCCTTTCCAACTTCACGAGAGGTTTGAATaGCTCTGGACTGATTTTGCTGATCTTGTTGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: QVKPFQLHERFE*LWTDFADLVVD Trigger: GTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTTGGAAAGGCTTTACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | GGTTTGAATGCCTCTGGACTGATTTTGCTGATCTTGTaGTTGACAAGGATCAAGGTATGCAAGTCCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: GLNASGLILLIL*LTRIKVCKSFR Trigger: CCTGAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AAATTAATCAGTCCTTTCAGGCTGGGTGCATCAACCTaGGTGATCTTGTTGCCATCTAGATGCACTTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: KLISPFRLGAST*VILLPSRCTSV Trigger: CACTGAAGTGCATCTAGATGGCAACAAGATCACCAAGGTTGATGCACCCAGCCTGAAAGGACTGATTAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | AACTTCACGAGAGGTTTGAATGCCTCTGGACTGATTTTGCTGATCTaGTTGTTGACAAGGATCAAGGTATGCAAGTCCTTCAGGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: NFTRGLNASGLILLI*LLTRIKVCKSFRFL Trigger: CAAGAACCTGAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS GCA 72 bp | ATTTTGCTGATCTTGTTGTTGACAAGGATCAAGGTATaGAAGTCCTTCAGGTTCTTGAAGGCCCCTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: ILLILLLTRIKV*KSFRFLKAPSL Trigger: CAAAGAAGGGGCCTTCAAGAACCTGAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | TTGAATGCCTCTGGACTGATTTTGCTGATCTTGTTGTaGACAAGGATCAAGGTATGCAAGTCCTTCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LNASGLILLILL*TRIKVCKSFRF Trigger: GAACCTGAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AGAGGTTTGAATGCCTCTGGACTGATTTTGCTGATCTaGTTGTTGACAAGGATCAAGGTATGCAAGTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RGLNASGLILLI*LLTRIKVCKSF Trigger: GAAGGACTTGCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | AACTTCACGAGAGGTTTGAATGCCTCTGGACTGATTTaGCTGATCTTGTTGTTGACAAGGATCAAGGTATGC | + |
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Preference number: 6 (lower is better) Translates to: NFTRGLNASGLI*LILLLTRIKVC Trigger: GCATACCTTGATCCTTGTCAACAACAAGATCAGCAAAATCAGTCCAGAGGCATTCAAACCTCTCGTGAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 72 bp | TTGGCCAGACTGCCATTCTCCATAACGGTGATGCTGTaGAAGCTCAATCCCAGTTTAGACAAATTAATCAGT | + |
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Preference number: 6 (lower is better) Translates to: LARLPFSITVML*KLNPSLDKLIS Trigger: ACTGATTAATTTGTCTAAACTGGGATTGAGCTTCAACAGCATCACCGTTATGGAGAATGGCAGTCTGGCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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| CDS CAA 90 bp | AGTTTAGACAAATTAATCAGTCCTTTCAGGCTGGGTGCATCAACCTaGGTGATCTTGTTGCCATCTAGATGCACTTCAGTGAGAGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SLDKLISPFRLGAST*VILLPSRCTSVREV Trigger: TACTTCTCTCACTGAAGTGCATCTAGATGGCAACAAGATCACCAAGGTTGATGCACCCAGCCTGAAAGGACTGATTAATTTGTCTAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105287.11 ENSMUST00000163448.4 |
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