RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DCLRE1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026648

Ensembl transcript IDs: ENSMUST00000061852.12, ENSMUST00000100463.10, ENSMUST00000102988.10, ENSMUST00000115066.8, ENSMUST00000129657.2

Found 334 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTCTCTTGTaGACAGTAAAGCTTCCCAGACAGTTCACCGCACGCCTCTTATCT +
Preference number: 1 (lower is better)
Translates to: SCAVSFELKQLPTLL*TVKLPRQFTARLLS
Trigger: AGATAAGAGGCGTGCGGTGAACTGTCTGGGAAGCTTTACTGTTCACAAGAGAGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 90 bp AGTTGCTATGTTTCACTTGAGCACTGTTGGAGTCTTCAGCTGAACTaGAGCTGTGGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACA +
Preference number: 1 (lower is better)
Translates to: SCYVSLEHCWSLQLN*SCGHKDSSAGNVVT
Trigger: TGTCACCACATTACCCGCGCTGCTGTCCTTATGACCACAGCTTCAGTTCAGCTGAAGACTCCAACAGTGCTCAAGTGAAACATAGCAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 90 bp ATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTaGCGTCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTA +
Preference number: 1 (lower is better)
Translates to: IPATTWWLTTIFNEI*RPLLVHLKTATVYL
Trigger: TAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR GCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTaGCCAGGACTTTTATGTATAGCATTGTATTGCAACATCGAAAGG +
Preference number: 1 (lower is better)
Translates to: SVSTLQATYIHSYGY*PGLLCIALYCNIER
Trigger: CCTTTCGATGTTGCAATACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR CCA 90 bp CTGGTGTTGCTTTCAGTACAAGAATGCAGGCAAGTCTTTGGGTCATaGAGCAAACTAACATTGAAGATGAAAGAAATCAGTACGGAGGCG +
Preference number: 1 (lower is better)
Translates to: LVLLSVQECRQVFGS*SKLTLKMKEISTEA
Trigger: CGCCTCCGTACTGATTTCTTTCATCTTCAATGTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAGCAACACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR CCA 90 bp GTATATTCACTCGGTATGCTACCTGACAGTCACTTAGCAAGCCTCTaGATTATCAGGCCAACCATCAGAGAGTTACATGTGGTCAAGTAT +
Preference number: 1 (lower is better)
Translates to: VYSLGMLPDSHLASL*IIRPTIRELHVVKY
Trigger: ATACTTGACCACATGTAACTCTCTGATGGTTGGCCTGATAATCCAGAGGCTTGCTAAGTGACTGTCAGGTAGCATACCGAGTGAATATAC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 90 bp ATATATATGTATAGAACAAAACCCTGGGCTGGAGAGATGGCTCAGTaGTTAAGAGCACTGACTGCTTTTCTGAAGGTCCTGAGTTCAAAT +
Preference number: 1 (lower is better)
Translates to: IYMYRTKPWAGEMAQ*LRALTAFLKVLSSN
Trigger: ATTTGAACTCAGGACCTTCAGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGGGTTTTGTTCTATACATATATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 90 bp TCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATaGATATTGCCCAGGACTTTTATGTATAGCATTGTATTGCAACAT +
Preference number: 1 (lower is better)
Translates to: SNKCVYPPGHIHPQL*ILPRTFMYSIVLQH
Trigger: ATGTTGCAATACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR TCA 90 bp AAGGAGCACTTAGAGATAAGATGGTTCAGATTAGTGCTGCTTGCATaGTTCTTTTCCTCAACTGAAGGACAATCACTTACACAGCCATTC +
Preference number: 1 (lower is better)
Translates to: KEHLEIRWFRLVLLA*FFSSTEGQSLTQPF
Trigger: GAATGGCTGTGTAAGTGATTGTCCTTCAGTTGAGGAAAAGAATCATGCAAGCAGCACTAATCTGAACCATCTTATCTCTAAGTGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 90 bp TTGATCTTATTATATAGATGTGTCACTCTGCAGATTTCTTGTGGTTaGTCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAG +
Preference number: 1 (lower is better)
Translates to: LILLYRCVTLQISCG*SNKCVYPPGHIHPQ
Trigger: CTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACACATCTATATAATAAGATCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR-3UTR TCA 90 bp TGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTACTCGGTATGCTACCTaGCAGTCACTTAGCAAGCCT +
Preference number: 2 (lower is better)
Translates to: WAWMSSCAVSFELKQLPTTRYAT*QSLSKP
Trigger: AGGCTTGCTAAGTGACTGTCAGGTAGCATACCGAGT...AGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAATATAGAACAAAACCCTaGGCTGGAGAGATGGCTCAG +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKYRTKP*AGEMAQ
Trigger: CTGAGCCATCTCTCCAGCCCAGGGTTTTGTTCTATA...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACTACCTCCCAAGTGCTaGGATTCAAGGCATATGCCA +
Preference number: 2 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPLPPKC*DSRHMP
Trigger: TGGCATATGCCTTGAATCTCAGCACTTGGGAGGTAG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR TCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAAGTGTGTGAATCACAGTaGAATGTAAGAGACCGTCAG +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKVCESQ*NVRDRQ
Trigger: CTGACGGTCTCTTACATTTCACTGTGATTCACACAC...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCACAAAACTATTTCCTTaGGAGTTAACCAACATTGAC +
Preference number: 2 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVTKLFP*ELTNID
Trigger: GTCAATGTTGGTTAACTCCCAAGGAAATAGTTTTGT...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAAATGCAGGCAAGTCTTTaGGTCATGGAGCAAACTAAC +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKMQASL*VMEQTN
Trigger: GTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCAT...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAACTGATGAGTTCACAGTaGATGCAGCTCGATATGGAA +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKLMSSQ*MQLDME
Trigger: TTCCATATCGAGCTGCATCCACTGTGAACTCATCAG...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAATTAGTGCTGCTTGCATaGTTCTTTTCCTCAACTGAA +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKLVLLA*FFSSTE
Trigger: TTCAGTTGAGGAAAAGAATCATGCAAGCAGCACTAA...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAAGGGCTTCTGTTAAATTaGGGTATTTCCGCTGTAATA +
Preference number: 2 (lower is better)
Translates to: VLENTGSPVVLCERLREKGLLLN*GISAVI
Trigger: TATTACAGCGGAAATACCCCAATTTAACAGAAGCCC...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCTCATGGCAGGCATTCTaGCTAGTGCATACCATCTTT +
Preference number: 2 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVSWQAF*LVHTIF
Trigger: AAAGATGGTATGCACTAGTCAGAATGCCTGCCATGA...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACTTTCAGTACAAGAATaGAGGCAAGTCTTTGGGTCA +
Preference number: 2 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPLSVQE*RQVFGS
Trigger: TGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCGTTAACAGATGTATATaGTTCATGCAAGGCGGGCAC +
Preference number: 2 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVVNRCI*FMQGGH
Trigger: GTGCCCGCCTTGCATGAACCATATACATCTGTTAAC...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAACTGGTCTCAACAGAATaGGTTCAGGATAGCACAAGG +
Preference number: 2 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQLVSTE*VQDSTR
Trigger: CCTTGTGCTATCCTGAACTCATTCTGTTGAGACCAG...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACAGGTCTCTATGGGTTTaGCACCAGCCTGGTCTCAAC +
Preference number: 2 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNRSLWV*HQPGLN
Trigger: GTTGAGACCAGGCTGGTGTCAAACCCATAGAGACCT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAATCCCAGCAACCACATaGTGGCTCACAACCATCTTT +
Preference number: 2 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQIPATT*WLTTIF
Trigger: AAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTCTACCTCCCAAGTGCTaGGATTCAAGGCATATGCCA +
Preference number: 2 (lower is better)
Translates to: STEADQQNKLCVERIKIFLPPKC*DSRHMP
Trigger: TGGCATATGCCTTGAATCTCAGCACTTGGGAGGTAG...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR TCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAGCCAAGATGTTTCCTTaGAGCCACAAGGTGAAAGTA +
Preference number: 2 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQAKMFP*SHKVKV
Trigger: TACTTTCACCTTGTGGCTTCAAGGAAACATCTTGGC...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CAA 90 bp GTGGTCTTCTATTCATCTCTGTCCTGCATAGCAGAGGTGGAGAGCTaGCACAGTCTGATTATAATGAAGTACCATATTTCAACTTACCTC +
Preference number: 2 (lower is better)
Translates to: VVFYSSLSCIAEVES*HSLIIMKYHISTYL
Trigger: GAGGTAAGTTGAAATATGGTACTTCATTATAATCAGACTGTGCAAGCTCTCCACCTCTGCTATGCAGGACAGAGATGAATAGAAGACCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR TCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGTCATGGCAGGCATTCTaGCTAGTGCATACCATCTTT +
Preference number: 2 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRSWQAF*LVHTIF
Trigger: AAAGATGGTATGCACTAGTCAGAATGCCTGCCATGA...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR GCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCCTTGTTACAGTTTCTTaGACGTGTGTAGTGTTATTG +
Preference number: 2 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVLVTVS*TCVVLL
Trigger: CAATAACACTACACACGTGCAAGAAACTGTAACAAG...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR GCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCACAGCTATGGATATTaGCCAGGACTTTTATGTATA +
Preference number: 2 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQHSYGY*PGLLCI
Trigger: TATACATAAAAGTCCTGGGCAATATCCATAGCTGTG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAGTGGAAGCAACATATTaGATATCTGACTTCTTGTAT +
Preference number: 2 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPVEATY*ISDFLY
Trigger: ATACAAGAAGTCAGATATCCAATATGTTGCTTCCAC...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR TCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTCATGGCAGGCATTCTaGCTAGTGCATACCATCTTT +
Preference number: 2 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNSWQAF*LVHTIF
Trigger: AAAGATGGTATGCACTAGTCAGAATGCCTGCCATGA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR GCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCTTTCAGTACAAGAATaGAGGCAAGTCTTTGGGTCA +
Preference number: 2 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRLSVQE*RQVFGS
Trigger: TGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAG...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACATGCAGGCAAGTCTTTaGGTCATGGAGCAAACTAAC +
Preference number: 2 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNMQASL*VMEQTN
Trigger: GTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCAT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCGTGGAAGCAACATATTaGATATCTGACTTCTTGTAT +
Preference number: 2 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVVEATY*ISDFLY
Trigger: ATACAAGAAGTCAGATATCCAATATGTTGCTTCCAC...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CAA 90 bp TACATCCACAGCTATGGATATTGCCCAGGACTTTTATGTATAGCATaGTATTGCAACATCGAAAGGCTGGACATCTTTGCTAGAATGAGA +
Preference number: 2 (lower is better)
Translates to: YIHSYGYCPGLLCIA*YCNIERLDIFARMR
Trigger: TCTCATTCTAGCAAAGATGTCCAGCCTTTCGATGTTGCAATACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACACACTGTGCTTTTCCTaGTGTGACCATTTCACATCA +
Preference number: 2 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNTLCFS*CDHFTS
Trigger: TGATGTGAAATGGTCACAGCAGGAAAAGCACAGTGT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR GCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATACATTCCAGCACTTGCTaGAGATACAACATTCTTACA +
Preference number: 2 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKIHSSTC*RYNILT
Trigger: TGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATG...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAATAAGGGCAGGAGGTTaGTACTATCATCATTTTATA +
Preference number: 2 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQIRAGG*YYHHFI
Trigger: TATAAAATGATGATAGTACCAACCTCCTGCCCTTAT...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACCTTGTTACAGTTTCTTaGACGTGTGTAGTGTTATTG +
Preference number: 2 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNLVTVS*TCVVLL
Trigger: CAATAACACTACACACGTGCAAGAAACTGTAACAAG...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGACAAAACTATTTCCTTaGGAGTTAACCAACATTGAC +
Preference number: 2 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRTKLFP*ELTNID
Trigger: GTCAATGTTGGTTAACTCCCAAGGAAATAGTTTTGT...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATAAATACAAAGTTATACTaGACTAAGGGCACGAACACT +
Preference number: 2 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKINTKLY*TKGTNT
Trigger: AGTGTTCGTGCCCTTAGTCCAGTATAACTTTGTATT...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CAA 90 bp TTGCATAGTTTCATCATTCAAGTACCAGGCAATAAGGGCAGGAGGTaGGTACTATCATCATTTTATATCTACATGACAGATAATGAGATA +
Preference number: 2 (lower is better)
Translates to: LHSFIIQVPGNKGRR*VLSSFYIYMTDNEI
Trigger: TATCTCATTATCTGTCATGTAGATATAAAATGATGATAGTACCAACCTCCTGCCCTTATTGCCTGGTACTTGAATGATGAAACTATGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp GCTGTGGTCATAAGGACAGCAGCGCGGGTAATGTGGTaGCAGGGATGGGCCTGGATGTCCTCCTGCGCTGTG +
Preference number: 3 (lower is better)
Translates to: AVVIRTAARVMW*QGWAWMSSCAV
Trigger: CACAGCGCAGGAGGACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACCACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CAA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGGATCACCTACCTCTTaGACCTGGACTACGAGTCTG +
Preference number: 3 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVGSPTS*TWTTSL
Trigger: CAGACTCGTAGTCCAGGTCAAAGAGGTAGGTGATCC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 72 bp GGGATGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTaGGCTGAAGCAGCTCCCGACTCTCTTGTGAACAGT +
Preference number: 3 (lower is better)
Translates to: GMGLDVLLRCEF*AEAAPDSLVNS
Trigger: ACTGTTCACAAGAGAGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR GCA 72 bp ACCAGGCAGGCCTCAGACTCAGAGATCCACCTGCCTTaGCTCTACCTCCCAAGTGCTGAGATTCAAGGCATA +
Preference number: 3 (lower is better)
Translates to: TRQASDSEIHLP*LYLPSAEIQGI
Trigger: TATGCCTTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGAGGCCTGCCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR GCA 72 bp TCTAGACCAGGCAGGCCTCAGACTCAGAGATCCACCTaGCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAG +
Preference number: 3 (lower is better)
Translates to: SRPGRPQTQRST*LASTSQVLRFK
Trigger: CTTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGAGGCCTGCCTGGTCTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CAA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGCAGAGGTGGAGAGCTaGCACAGTCTGATTATAATG +
Preference number: 3 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVAEVES*HSLIIM
Trigger: CATTATAATCAGACTGTGCAAGCTCTCCACCTCTGC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 72 bp GTGAGTTTTGAGCTGAAGCAGCTCCCGACTCTCTTGTaGACAGTAAAGCTTCCCAGACAGTTCACCGCACGC +
Preference number: 3 (lower is better)
Translates to: VSFELKQLPTLL*TVKLPRQFTAR
Trigger: GCGTGCGGTGAACTGTCTGGGAAGCTTTACTGTTCACAAGAGAGTCGGGAGCTGCTTCAGCTCAAAACTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CAA 90 bp TGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTCACATCATTGTGCTCTaGGTGATGTGTAAAAAGAAC +
Preference number: 3 (lower is better)
Translates to: WAWMSSCAVSFELKQLPTHIIVL*VMCKKN
Trigger: GTTCTTTTTACACATCACCAAGAGCACAATGATGTG...AGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 72 bp GTTTCACTTGAGCACTGTTGGAGTCTTCAGCTGAACTaGAGCTGTGGTCATAAGGACAGCAGCGCGGGTAAT +
Preference number: 3 (lower is better)
Translates to: VSLEHCWSLQLN*SCGHKDSSAGN
Trigger: ATTACCCGCGCTGCTGTCCTTATGACCACAGCTTCAGTTCAGCTGAAGACTCCAACAGTGCTCAAGTGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 72 bp TATAGAACAAAACCCTGGGCTGGAGAGATGGCTCAGTaGTTAAGAGCACTGACTGCTTTTCTGAAGGTCCTG +
Preference number: 3 (lower is better)
Translates to: YRTKPWAGEMAQ*LRALTAFLKVL
Trigger: CAGGACCTTCAGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGGGTTTTGTTCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 72 bp CTCGGTATGCTACCTGACAGTCACTTAGCAAGCCTCTaGATTATCAGGCCAACCATCAGAGAGTTACATGTG +
Preference number: 3 (lower is better)
Translates to: LGMLPDSHLASL*IIRPTIRELHV
Trigger: CACATGTAACTCTCTGATGGTTGGCCTGATAATCCAGAGGCTTGCTAAGTGACTGTCAGGTAGCATACCGAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACAGAGATCCACCTGCCTaGCCTCTACCTCCCAAGTGC +
Preference number: 3 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNRDPPA*PLPPKC
Trigger: GCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp GCTAGCTCTTGGTCTTTCTTCCAAGTCATCTCAGCCTaGCTTTTCTCAGGACTTCCACTTTGGAAGCTTGAC +
Preference number: 3 (lower is better)
Translates to: ASSWSFFQVISA*LFSGLPLWKLD
Trigger: GTCAAGCTTCCAAAGTGGAAGTCCTGAGAAAAGTCAGGCTGAGATGACTTGGAAGAAAGACCAAGAGCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp ACCACATGGTGGCTCACAACCATCTTTAATGAGATCTaGCGTCCTCTTCTGGTGCATCTGAAGACAGCTACA +
Preference number: 3 (lower is better)
Translates to: TTWWLTTIFNEI*RPLLVHLKTAT
Trigger: TGTAGCTGTCTTCAGATGCACCAGAAGAGGACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR GCA 72 bp GAACCGTATGCCTTTAGAGCAGTTGTTTTCAGCCTGTaGGGTGTTATCCCTTTAGGAGTTGAGCAGATCTTT +
Preference number: 3 (lower is better)
Translates to: EPYAFRAVVFSL*GVIPLGVEQIF
Trigger: AAAGATCTGCTCAACTCCTAAAGGGATAACACCGCACAGGCTGAAAACAACTGCTCTAAAGGCATACGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 72 bp TGTGTCTACCCTCCAGGCCACATACATCCACAGCTATaGATATTGCCCAGGACTTTTATGTATAGCATTGTA +
Preference number: 3 (lower is better)
Translates to: CVYPPGHIHPQL*ILPRTFMYSIV
Trigger: TACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR-3UTR CAA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCTTCCTTACATTCAACTaGAGACCTCATAGCCACATA +
Preference number: 3 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVFLTFN*RPHSHI
Trigger: TATGTGGCTATGAGGTCTCAAGTTGAATGTAAGGAA...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 72 bp TCCTGCTGTGACCATTTCACATCATTGTGCTCTTGGTaGTGTGTAAAAAGAACGCTTGTGCACTGGATTTCT +
Preference number: 3 (lower is better)
Translates to: SCCDHFTSLCSW*CVKRTLVHWIS
Trigger: AGAAATCCAGTGCACAAGCGTTCTTTTTACACATCACCAAGAGCACAATGATGTGAAATGGTCACAGCAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp TGTTTTCAGCCTGTGCGGTGTTATCCCTTTAGGAGTTaGGCAGATCTTTTACAGGGTCGTATATCAAATGTC +
Preference number: 3 (lower is better)
Translates to: CFQPVRCYPFRS*ADLLQGRISNV
Trigger: GACATTTGATATACGACCCTGTAAAAGATCTGCTCAACTCCTAAAGGGATAACACCGCACAGGCTGAAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 72 bp TTTGTTTCTTTGGTTCCACACTACTGTACTATTCTGTaGTTTTGGAGAACACAGGGTCACCTGTGGTCCTAT +
Preference number: 3 (lower is better)
Translates to: FVSLVPHYCTIL*FWRTQGHLWSY
Trigger: ATAGGACCACAGGTGACCCTGTGTTCTCCAAAACCACAGAATAGTACAGTAGTGTGGAACCAAAGAAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR TCA 72 bp AAATACAAAACTATTTCCTTGGGAGTTAACCAACATTaGCTATGTAGCCCTGGCTGTCCTGGAACTCAGTGT +
Preference number: 3 (lower is better)
Translates to: KYKTISLGVNQH*LCSPGCPGTQC
Trigger: ACACTGAGTTCCAGGACAGCCAGGGCTACATAGTCAATGTTGGTTAACTCCCAAGGAAATAGTTTTGTATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp TTATATAGATGTGTCACTCTGCAGATTTCTTGTGGTTaGTCTAACAAGTGTGTCTACCCTCCAGGCCACATA +
Preference number: 3 (lower is better)
Translates to: LYRCVTLQISCG*SNKCVYPPGHI
Trigger: TATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACACATCTATATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR GCA 72 bp TTCTCCTGTATCCCAGGGATTCATTCCAGCACTTGCTaGAGATACAACATTCTTACAAGTTCCTTACATTCA +
Preference number: 3 (lower is better)
Translates to: FSCIPGIHSSTC*RYNILTSSLHS
Trigger: TGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGAATCCCTGGGATACAGGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR CCA 72 bp GGTGTTGCTTTCAGTACAAGAATGCAGGCAAGTCTTTaGGTCATGGAGCAAACTAACATTGAAGATGAAAGA +
Preference number: 3 (lower is better)
Translates to: GVAFSTRMQASL*VMEQTNIEDER
Trigger: TCTTTCATCTTCAATGTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAGCAACACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACCTGCCCAGGATAGCATaGTTCTCTACAAGAACCATA +
Preference number: 3 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNLPRIA*FSTRTI
Trigger: TATGGTTCTTGTAGAGAACAATGCTATCCTGGGCAG...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCACATCATTGTGCTCTaGGTGATGTGTAAAAAGAAC +
Preference number: 3 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRHIIVL*VMCKKN
Trigger: GTTCTTTTTACACATCACCAAGAGCACAATGATGTG...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACCACATCATTGTGCTCTaGGTGATGTGTAAAAAGAAC +
Preference number: 3 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNHIIVL*VMCKKN
Trigger: GTTCTTTTTACACATCACCAAGAGCACAATGATGTG...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR GCA 72 bp AAAATAATCTTACTGGTGTTGCTTTCAGTACAAGAATaGAGGCAAGTCTTTGGGTCATGGAGCAAACTAACA +
Preference number: 3 (lower is better)
Translates to: KIILLVLLSVQE*RQVFGSWSKLT
Trigger: TGTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAGCAACACCAGTAAGATTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR CCA 72 bp CTTTCAGTACAAGAATGCAGGCAAGTCTTTGGGTCATaGAGCAAACTAACATTGAAGATGAAAGAAATCAGT +
Preference number: 3 (lower is better)
Translates to: LSVQECRQVFGS*SKLTLKMKEIS
Trigger: ACTGATTTCTTTCATCTTCAATGTTAGTTTGCTCCATGACCCAAAGACTTGCCTGCATTCTTGTACTGAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTAAGTTCTTAATTCTGTaGGCTGATTGTGATCGTGAA +
Preference number: 3 (lower is better)
Translates to: STEADQQNKLCVERIKIFKFLIL*ADCDRE
Trigger: TTCACGATCACAATCAGCCAACAGAATTAAGAACTT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR TCA 72 bp TTAGAGATAAGATGGTTCAGATTAGTGCTGCTTGCATaGTTCTTTTCCTCAACTGAAGGACAATCACTTACA +
Preference number: 3 (lower is better)
Translates to: LEIRWFRLVLLA*FFSSTEGQSLT
Trigger: TGTAAGTGATTGTCCTTCAGTTGAGGAAAAGAATCATGCAAGCAGCACTAATCTGAACCATCTTATCTCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR GCA 72 bp ATAAGCACAAGATTAGTAATACTAGCAATTTGGATTTaGCAAGATGTTTCCTTGAAGCCACAAGGTGAAAGT +
Preference number: 3 (lower is better)
Translates to: ISTRLVILAIWI*QDVSLKPQGES
Trigger: ACTTTCACCTTGTGGCTTCAAGGAAACATCTTGGCAAATCCAAATTGCTAGTATTACTAATCTTGTGCTTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CCA 72 bp TTGTTCATAAGCACAAGATTAGTAATACTAGCAATTTaGATTTGCCAAGATGTTTCCTTGAAGCCACAAGGT +
Preference number: 3 (lower is better)
Translates to: LFISTRLVILAI*ICQDVSLKPQG
Trigger: ACCTTGTGGCTTCAAGGAAACATCTTGGCAAATCCAAATTGCTAGTATTACTAATCTTGTGCTTATGAACAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp TGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTTTGTGTGTGCGCATGTaGATGCAGGTGCCATGGAGG +
Preference number: 4 (lower is better)
Translates to: WAWMSSCAVSFELKQLPTLCVRM*MQVPWR
Trigger: CCTCCATGGCACCTGCATTCACATGCGCACACACAA...AGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGAAGCAAGCTCTGTATaGGCTCTCTCCAGTCCTAAC +
Preference number: 4 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVEASSV*ALSSPN
Trigger: GTTAGGACTGGAGAGAGCTCATACAGAGCTTGCTTC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACACTGATCCTGGGCAGTaGCCAGCTGGTAAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDTDPGQ*PAGKRV
Trigger: GACTCTCTTACCAGCTGGTCACTGCCCAGGATCAGT...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAATTGTGTGTGCGCATGTaGATGCAGGTGCCATGGAGG +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQLCVRM*MQVPWR
Trigger: CCTCCATGGCACCTGCATTCACATGCGCACACACAA...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAACTGAAAACACTCTTCTaGCTTTGGGTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQLKTLF*LWVAAG
Trigger: GCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAG...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACACACACTCTCTGCTTTaGAGCCTCCTGGGCTTTGTC +
Preference number: 4 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDTHSLL*SLLGFV
Trigger: GACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGT...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGTAAAGATTTGTGTGTaGGCATGTGAATGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVVKICV*ACECRC
Trigger: GCACCTGCATTCACATGCGCACACACAAATCTTTAC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTTTCAGCCACACGACGTaGTGCGGACTCCTAGTGACC +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFFSHTT*CGLLVT
Trigger: GGTCACTAGGAGTCCGCACCACGTCGTGTGGCTGAA...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTACACTCTTCTGCCTTTaGGTGGCGGCAGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFTLFCL*VAAGVD
Trigger: ATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGT...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp TGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTTCACGTTGGTTTTTCTaGTCCTCTCTCCAAACCACA +
Preference number: 4 (lower is better)
Translates to: WAWMSSCAVSFELKQLPTSRWFF*SSLQTT
Trigger: TGTGGTTTGGAGAGAGGACCAGAAAAACCAACGTGA...AGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAATTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQFGSTL*GDRHRG
Trigger: GCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAA...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAATGGAGGCCAGAAGCTaGAGTTTGAGGCTAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQMEARS*SLRLGR
Trigger: CCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCAT...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTACTGCAGAGCTTTGGTaGCTGAGATCCCCCTGTCTC +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFTAELW*LRSPCL
Trigger: GAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGT...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp ACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCACTGAAAACACTCTTCTaGCTTTGGGTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: TSVSTLQATYIHSYGYCPLKTLF*LWVAAG
Trigger: GCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAG...TGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGCTGATTGTGTGGAGTaGAGTTTTGTTTTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVADCVE*SFVLGS
Trigger: ACTTCCCAAAACAAAACTGCACTCCACACAATCAGC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR GCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTTCCGGATCAGCATTTTaGTGGACGAGTGTCGAGGGG +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFSGSAF*WTSVEG
Trigger: CCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGA...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATTCAGCCACACGACGTaGTGCGGACTCCTAGTGACC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPFSHTT*CGLLVT
Trigger: GGTCACTAGGAGTCCGCACCACGTCGTGTGGCTGAA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAACACTCTTCTGCCTTTaGGTGGCGGCAGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPTLFCL*VAAGVD
Trigger: ATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGT...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAATGCTTTGCAGCCTCCTaGGCTTTGTCTCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQCFAAS*ALSQFR
Trigger: CCTGAACTGAGACAAAGCCCAGGAGGCTGCAAAGCA...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAACTGATCCTGGGCAGTaGCCAGCTGGTAAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPTDPGQ*PAGKRV
Trigger: GACTCTCTTACCAGCTGGTCACTGCCCAGGATCAGT...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR TCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAGAAAACAGCTCAGGCTaGAGAGTTAGCTGGTACGGA +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQENSSG*RVSWYG
Trigger: TCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTC...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGAGAAAACAGCTCAGGCTaGAGAGTTAGCTGGTACGGA +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGENSSG*RVSWYG
Trigger: TCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTC...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTCAGAGCTTTGGTGACTaGGATCCCCCTGTCTCTATG +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFQSFGD*DPPVSM
Trigger: CATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTG...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAACTCTGCCTCCAGAGTaGAGAAGCTCCATTCTGGAA +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQTLPPE*RSSILE
Trigger: TTCCAGAATGGAGCTTCTGCACTCTGGAGGCAGAGT...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACTGAAAACACTCTTCTaGCTTTGGGTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPLKTLF*LWVAAG
Trigger: GCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACGCTCCACACACTCTCTaGTTTGCAGCCTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHAPHTL*FAASWA
Trigger: AGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTGGAGC...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATCCGGATCAGCATTTTaGTGGACGAGTGTCGAGGGG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPSGSAF*WTSVEG
Trigger: CCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAGCATGTGAATGCAGGTaGCATGGAGGCCAGAAGCTG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPACECR*HGGQKL
Trigger: CAGCTTCTGGCCTCCATGGCACCTGCATTCACATGC...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTCAGGTGGAGACTTCCTaGCACTCAGGGTGTCTAGTT +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFQVETS*HSGCLV
Trigger: AACTAGACACCCTGAGTGGCAGGAAGTCTCCACCTG...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp GTTTTGGAGAACACAGGGTCACCTGTGGTCCTATGTGAGAGGCTGAGGGAGAAATGTCGAAGCGGTCAATaGAGATGGTTGGATACTCCG +
Preference number: 4 (lower is better)
Translates to: VLENTGSPVVLCERLREKCRSGQ*RWLDTP
Trigger: CGGAGTATCCAACCATCTCCATTGACCGCTTCGACA...TTTCTCCCTCAGCCTCTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTGTCCGTTGTGAGATaGTGCAGGATATCAGGCATG +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGLSVVR*CRISGM
Trigger: CATGCCTGATATCCTGCACCATCTCACAACGGACAG...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCACACTCTTCTGCCTTTaGGTGGCGGCAGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVTLFCL*VAAGVD
Trigger: ATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGT...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATTTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYFGSTL*GDRHRG
Trigger: GCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAA...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAATGGAGGCCAGAAGCTaGAGTTTGAGGCTAGGGAGG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPMEARS*SLRLGR
Trigger: CCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCAT...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGATCACTGAAGGAGGAGTaGAAAGAGAAGCAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGSLKEE*KEKQAL
Trigger: CAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGA...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACGGAAGACCTTCAAGCTaGATTCCAGCCTTCTTTTCA +
Preference number: 4 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDGRPSS*IPAFFS
Trigger: TGAAAAGAAGGCTGGAATGCAGCTTGAAGGTCTTCC...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGAGGATGTCTTTTACTCTaGCTCCAGAGTGCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGGCLLL*LQSAEA
Trigger: AGCTTCTGCACTCTGGAGGCAGAGTAAAAGACATCC...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCGCATGTGAATGCAGGTaGCATGGAGGCCAGAAGCTG +
Preference number: 4 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVACECR*HGGQKL
Trigger: CAGCTTCTGGCCTCCATGGCACCTGCATTCACATGC...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACAGCTCCTTAGTGACTaGAGAACAGTACAGGAAGAC +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGQLLSD*RTVQED
Trigger: GTCTTCCTGTACTGTTCTCCAGTCACTAAGGAGCTG...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTCACGTTGGTTTTTCTaGTCCTCTCTCCAAACCACA +
Preference number: 4 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDSRWFF*SSLQTT
Trigger: TGTGGTTTGGAGAGAGGACCAGAAAAACCAACGTGA...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAACACAGTGAGGCCAACTaGGATGACATTTGGATACAC +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQHSEAN*DDIWIH
Trigger: GTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTG...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCTTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVFGSTL*GDRHRG
Trigger: GCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAA...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATTGCTTTGCAGCCTCCTaGGCTTTGTCTCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYCFAAS*ALSQFR
Trigger: CCTGAACTGAGACAAAGCCCAGGAGGCTGCAAAGCA...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAGAAAACAGCTCAGGCTaGAGAGTTAGCTGGTACGGA +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPENSSG*RVSWYG
Trigger: TCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTC...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATTGGCAGTGCCTTCATTaGAAACAGCTCAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYWQCLH*KQLRLK
Trigger: CTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCA...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAGGAAGACCTTCAAGCTaGATTCCAGCCTTCTTTTCA +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQGRPSS*IPAFFS
Trigger: TGAAAAGAAGGCTGGAATGCAGCTTGAAGGTCTTCC...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR GCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATGCTTTGGTGAGTCACTaGAGAGCTTTGGTGAGTCAC +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYALVSH*RALVSH
Trigger: GTGACTCACCAAAGCTCTGCAGTGACTCACCAAAGC...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp TGGGCCTGGATGTCCTCCTGCGCTGTGAGTTTTGAGCTGAAGCAGCTCCCGACTTCTAAATACACACTTTaGATGTCTTTTACTCTGCCT +
Preference number: 4 (lower is better)
Translates to: WAWMSSCAVSFELKQLPTSKYTL*MSFTLP
Trigger: AGGCAGAGTAAAAGACATCCAAAGTGTGTATTTAGA...AGTCGGGAGCTGCTTCAGCTCAAAACTCACAGCGCAGGAGGACATCCAGGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACTGTCCGTTGTGAGATaGTGCAGGATATCAGGCATG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPLSVVR*CRISGM
Trigger: CATGCCTGATATCCTGCACCATCTCACAACGGACAG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTCACAGTGAGGCCAACTaGGATGACATTTGGATACAC +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFHSEAN*DDIWIH
Trigger: GTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTG...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATGGGAAGAGATATGGGTaGAGTCTCCATCAGAGTCAC +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYGKRYG*SLHQSH
Trigger: GTGACTCTGATGGAGACTCCACCCATATCTCTTCCC...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCTGGCAGTGCCTTCATTaGAAACAGCTCAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVWQCLH*KQLRLK
Trigger: CTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCA...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATCTCCTTTTGCCAGTCTaGAGTCTCCTCACCCGAAGC +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHLLLPV*SLLTRS
Trigger: GCTTCGGGTGAGGAGACTTCAGACTGGCAAAAGGAG...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGCTCCACACACTCTCTaGTTTGCAGCCTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRAPHTL*FAASWA
Trigger: AGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTGGAGC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGTGTGCGCATGTGAATaGAGGTGCCATGGAGGCCAG +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRVCACE*RCHGGQ
Trigger: CTGGCCTCCATGGCACCTGCATTCACATGCGCACAC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCTCCATCAGAGTCACTaGAGAGCTTTGGTGAGTCAC +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQLHQSH*RALVSH
Trigger: GTGACTCACCAAAGCTCTGCAGTGACTCTGATGGAG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGAGCGGTCAATGGAGATaGTTGGATACTCCGCCATCT +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQSGQWR*LDTPPS
Trigger: AGATGGCGGAGTATCCAACCATCTCCATTGACCGCT...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACAGCTCCTTAGTGACTaGAGAACAGTACAGGAAGAC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPQLLSD*RTVQED
Trigger: GTCTTCCTGTACTGTTCTCCAGTCACTAAGGAGCTG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAGATCTGATAAAACCTTaGGTCACAGAAAGTCGTGTC +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQDLIKP*VTESRV
Trigger: GACACGACTTTCTGTGACCCAAGGTTTTATCAGATC...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACACAGTGAGGCCAACTaGGATGACATTTGGATACAC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPHSEAN*DDIWIH
Trigger: GTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATATGGAGGCCAGAAGCTaGAGTTTGAGGCTAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHMEARS*SLRLGR
Trigger: CCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCAT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGCTCCACACACTCTCTaGTTTGCAGCCTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFAPHTL*FAASWA
Trigger: AGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTGGAGC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGTGTGCGCATGTGAATaGAGGTGCCATGGAGGCCAG +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNVCACE*RCHGGQ
Trigger: CTGGCCTCCATGGCACCTGCATTCACATGCGCACAC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAGTAAAGATTTGTGTGTaGGCATGTGAATGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPVKICV*ACECRC
Trigger: GCACCTGCATTCACATGCGCACACACAAATCTTTAC...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTGATCTGATAAAACCTTaGGTCACAGAAAGTCGTGTC +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFDLIKP*VTESRV
Trigger: GACACGACTTTCTGTGACCCAAGGTTTTATCAGATC...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTTTCAGCCACACGACGTaGTGCGGACTCCTAGTGACC +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFFSHTT*CGLLVT
Trigger: GGTCACTAGGAGTCCGCACCACGTCGTGTGGCTGAA...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTACACTCTTCTGCCTTTaGGTGGCGGCAGGCGTGGAT +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFTLFCL*VAAGVD
Trigger: ATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATCACGTTGGTTTTTCTaGTCCTCTCTCCAAACCACA +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPSRWFF*SSLQTT
Trigger: TGTGGTTTGGAGAGAGGACCAGAAAAACCAACGTGA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAATGGATACACATTCACTaGGCAGATGTAGCTCAAAAA +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQWIHIH*ADVAQK
Trigger: TTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCA...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGATGGATACACATTCACTaGGCAGATGTAGCTCAAAAA +
Preference number: 4 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGWIHIH*ADVAQK
Trigger: TTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCA...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATAAGCGGTTTGTACTTTaGCTCAACACTTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYKRFVL*LNTLGR
Trigger: TCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTT...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTACTGATCCTGGGCAGTaGCCAGCTGGTAAGAGAGTC +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFTDPGQ*PAGKRV
Trigger: GACTCTCTTACCAGCTGGTCACTGCCCAGGATCAGT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR TCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGGGAGGTGGCTAGCTTaGATGTTGGGAGTGAACTCT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRGRWLA*MLGVNS
Trigger: AGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTTTGTGTGTGCGCATGTaGATGCAGGTGCCATGGAGG +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFLCVRM*MQVPWR
Trigger: CCTCCATGGCACCTGCATTCACATGCGCACACACAA...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp ACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCACAGAAATACTCTCTTTaGGTTTTGGTTTGTAGGCAC +
Preference number: 4 (lower is better)
Translates to: TSVSTLQATYIHSYGYCPQKYSL*VLVCRH
Trigger: GTGCCTACAAACCAAAACTCAAAGAGAGTATTTCTG...TGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACCTGAAAACACTCTTCTaGCTTTGGGTGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNLKTLF*LWVAAG
Trigger: GCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAG...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATGCTGATTGTGTGGAGTaGAGTTTTGTTTTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYADCVE*SFVLGS
Trigger: ACTTCCCAAAACAAAACTGCACTCCACACAATCAGC...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACTGGTACGGAACTTTGTaGCTTAAAGGTGTCGGTAGA +
Preference number: 4 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHWYGTL*LKGVGR
Trigger: TCTACCGACACCTTTAAGGCACAAAGTTCCGTACCA...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTCCGGATCAGCATTTTaGTGGACGAGTGTCGAGGGG +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNSGSAF*WTSVEG
Trigger: CCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGCATGTGAATGCAGGTaGCATGGAGGCCAGAAGCTG +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFACECR*HGGQKL
Trigger: CAGCTTCTGGCCTCCATGGCACCTGCATTCACATGC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGTTCCTGTATAAGCACTaGAAATGCTCTGGCGTAGGA +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQFLYKH*KCSGVG
Trigger: TCCTACGCCAGAGCATTTGCAGTGCTTATACAGGAA...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATTTTACTCTCCAGAGTaGAGAAGCTCCATTCTGGAA +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPFYSPE*RSSILE
Trigger: TTCCAGAATGGAGCTTCTGCACTCTGGAGAGTAAAA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATTGTCGAAGCGGTCAATaGAGATGGTTGGATACTCCG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHCRSGQ*RWLDTP
Trigger: CGGAGTATCCAACCATCTCCATTGACCGCTTCGACA...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATCTGTCCGTTGTGAGATaGTGCAGGATATCAGGCATG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHLSVVR*CRISGM
Trigger: CATGCCTGATATCCTGCACCATCTCACAACGGACAG...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTAGTGCAGTTTTGTTTTaGGAAGTTATACCACAGGGT +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFSAVLF*EVIPQG
Trigger: ACCCTGTGGTATAACTTCCCAAAACAAAACTGCACT...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAAAACCACATGGTAGATaGCTTGATGCTGATTGTGTG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPKPHGR*LDADCV
Trigger: CACACAATCAGCATCAAGCCATCTACCATGTGGTTT...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNFGSTL*GDRHRG
Trigger: GCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGTGCTTTGCAGCCTCCTaGGCTTTGTCTCAGTTCAGG +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRCFAAS*ALSQFR
Trigger: CCTGAACTGAGACAAAGCCCAGGAGGCTGCAAAGCA...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATGTATTTCCAGGTTCTaGAGAAGCATCTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPCISRF*RSIFRL
Trigger: GAGTCTGAAGATGCTTCTCCAGAACCTGGAAATACA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGACAGTGAGTATCTTGTaGACACAGTGCATCCTGTTC +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQTVSIL*TQCILF
Trigger: GAACAGGATGCACTGTGTCCACAAGATACTCACTGT...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
3UTR CAA 72 bp TTCTTTGGTTCCACACTACTGTACTATTCTGTGGTTTaGGAGAACACAGGGTCACCTGTGGTCCTATGTGAG +
Preference number: 4 (lower is better)
Translates to: FFGSTLLYYSVV*ENTGSPVVLCE
Trigger: CTCACATAGGACCACAGGTGACCCTGTGTTCTCCAAAACCACAGAATAGTACAGTAGTGTGGAACCAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATTCACTGAAGGAGGAGTaGAAAGAGAAGCAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHSLKEE*KEKQAL
Trigger: CAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGA...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGTGGCAGTGCCTTCATTaGAAACAGCTCAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRWQCLH*KQLRLK
Trigger: CTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCA...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATAGGGAGGTGGCTAGCTTaGATGTTGGGAGTGAACTCT +
Preference number: 4 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKIGRWLA*MLGVNS
Trigger: AGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCC...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGGGAGGTGGCTAGCTTaGATGTTGGGAGTGAACTCT +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFGRWLA*MLGVNS
Trigger: AGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACGCATCCTGTTCTATTTaGGAGGCAGAAATACTCTCT +
Preference number: 4 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHASCSI*EAEILS
Trigger: AGAGAGTATTTCTGCCTCTCAAATAGAACAGGATGC...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTACACACTCTCTGCTTTaGAGCCTCCTGGGCTTTGTC +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFTHSLL*SLLGFV
Trigger: GACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAATCTAAATACACACTTTaGATGTCTTTTACTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQSKYTL*MSFTLP
Trigger: AGGCAGAGTAAAAGACATCCAAAGTGTGTATTTAGA...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGAAACCACATGGTAGATaGCTTGATGCTGATTGTGTG +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQKPHGR*LDADCV
Trigger: CACACAATCAGCATCAAGCCATCTACCATGTGGTTT...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATGGATACACATTCACTaGGCAGATGTAGCTCAAAAA +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPWIHIH*ADVAQK
Trigger: TTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAACTGGGATGACATTTaGATACACATTCACTGGGCA +
Preference number: 4 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHNWDDI*IHIHWA
Trigger: TGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTT...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATCACAGTGAGGCCAACTaGGATGACATTTGGATACAC +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHHSEAN*DDIWIH
Trigger: GTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTG...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGAAGCAAGCTCTGTATaGGCTCTCTCCAGTCCTAAC +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFEASSV*ALSSPN
Trigger: GTTAGGACTGGAGAGAGCTCATACAGAGCTTGCTTC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCTTTTCAAATCACAGTaGGTATCTTGTGGACACAGT +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQLFKSQ*VSCGHS
Trigger: ACTGTGTCCACAAGATACTCACTGTGATTTGAAAAG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR GCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATGGAAGACCTTCAAGCTaGATTCCAGCCTTCTTTTCA +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHGRPSS*IPAFFS
Trigger: TGAAAAGAAGGCTGGAATGCAGCTTGAAGGTCTTCC...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR GCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATAACTCTGCCTCCAGAGTaGAGAAGCTCCATTCTGGAA +
Preference number: 4 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKITLPPE*RSSILE
Trigger: TTCCAGAATGGAGCTTCTGCACTCTGGAGGCAGAGT...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR GCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGGATGTCTTTTACTCTaGCTCCAGAGTGCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRGCLLL*LQSAEA
Trigger: AGCTTCTGCACTCTGGAGGCAGAGTAAAAGACATCC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR GCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAATGGTACGGAACTTTGTaGCTTAAAGGTGTCGGTAGA +
Preference number: 4 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQWYGTL*LKGVGR
Trigger: TCTACCGACACCTTTAAGGCACAAAGTTCCGTACCA...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATAAGCGGTCAATGGAGATaGTTGGATACTCCGCCATCT +
Preference number: 4 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKISGQWR*LDTPPS
Trigger: AGATGGCGGAGTATCCAACCATCTCCATTGACCGCT...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTAGCGGTCAATGGAGATaGTTGGATACTCCGCCATCT +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFSGQWR*LDTPPS
Trigger: AGATGGCGGAGTATCCAACCATCTCCATTGACCGCT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CCA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTTCTAAATACACACTTTaGATGTCTTTTACTCTGCCT +
Preference number: 4 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFSKYTL*MSFTLP
Trigger: AGGCAGAGTAAAAGACATCCAAAGTGTGTATTTAGA...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTCTGTCCGTTGTGAGATaGTGCAGGATATCAGGCATG +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFLSVVR*CRISGM
Trigger: CATGCCTGATATCCTGCACCATCTCACAACGGACAG...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACTTGATGCTGATTGTGTaGAGTGCAGTTTTGTTTTGG +
Preference number: 4 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHLMLIV*SAVLFW
Trigger: CCAAAACAAAACTGCACTCCACACAATCAGCATCAA...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATAAGCGGTTTGTACTTTaGCTCAACACTTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHKRFVL*LNTLGR
Trigger: TCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR CAA 72 bp TACCCTCCAGGCCACATACATCCACAGCTATGGATATaGCCCAGGACTTTTATGTATAGCATTGTATTGCAA +
Preference number: 4 (lower is better)
Translates to: YPPGHIHPQLWI*PRTFMYSIVLQ
Trigger: TTGCAATACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR TCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTCACTGAAGGAGGAGTaGAAAGAGAAGCAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNSLKEE*KEKQAL
Trigger: CAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTTCACTGAAGGAGGAGTaGAAAGAGAAGCAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFSLKEE*KEKQAL
Trigger: CAGAGCTTGCTTCTCTTTTCACTCCTCCTTCAGTGA...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAATCTTCAGACTCCATTaGCCACAGCCTTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQIFRLH*PQPFIF
Trigger: AAAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGAT...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR GCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATGCTGATTGTGTGGAGTaGAGTTTTGTTTTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHADCVE*SFVLGS
Trigger: ACTTCCCAAAACAAAACTGCACTCCACACAATCAGC...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGGAAGCTTCTCCTTTTaGCAGTCTGAAGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNGSFSF*QSEVSS
Trigger: TGAGGAGACTTCAGACTGGCAAAAGGAGAAGCTTCC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATGATCTGATAAAACCTTaGGTCACAGAAAGTCGTGTC +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHDLIKP*VTESRV
Trigger: GACACGACTTTCTGTGACCCAAGGTTTTATCAGATC...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CTTACCCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAACCACATGGTAGATaGCTTGATGCTGATTGTGTG +
Preference number: 4 (lower is better)
Translates to: LTHNLLSTVSLAYLALVQKPHGR*LDADCV
Trigger: CACACAATCAGCATCAAGCCATCTACCATGTGGTTT...TTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGGGTAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATAAACCACATGGTAGATaGCTTGATGCTGATTGTGTG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHKPHGR*LDADCV
Trigger: CACACAATCAGCATCAAGCCATCTACCATGTGGTTT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGAAGCGGTTTGTACTTTaGCTCAACACTTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRKRFVL*LNTLGR
Trigger: TCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTT...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AAATCCCAGCAACCACATGGTGGCTCACAACCATCTTTAATGAGATCTGACGTCCAAGATGGATTGTTCTaGCTCTCTTCAATTTTCCAA +
Preference number: 4 (lower is better)
Translates to: KSQQPHGGSQPSLMRSDVQDGLF*LSSIFQ
Trigger: TTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTG...GACGTCAGATCTCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCAAGATGGATTGTTCTaGCTCTCTTCAATTTTCCAA +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQQDGLF*LSSIFQ
Trigger: TTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCCACCACTTTTCTCTTaGGAAGATAACAAAACAGTA +
Preference number: 4 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQPPLFS*EDNKTV
Trigger: TACTGTTTTGTTATCTTCCCAAGAGAAAAGTGGTGG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCATCTAAATACACACTTTaGATGTCTTTTACTCTCCAG +
Preference number: 4 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPSKYTL*MSFTLQ
Trigger: CTGGAGAGTAAAAGACATCCAAAGTGTGTATTTAGA...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGATCTTCAGACTCCATTaGCCACAGCCTTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRIFRLH*PQPFIF
Trigger: AAAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGAT...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGCTGATTGTGTGGAGTaGAGTTTTGTTTTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRADCVE*SFVLGS
Trigger: ACTTCCCAAAACAAAACTGCACTCCACACAATCAGC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTTGGTACGGAACTTTGTaGCTTAAAGGTGTCGGTAGA +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFWYGTL*LKGVGR
Trigger: TCTACCGACACCTTTAAGGCACAAAGTTCCGTACCA...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR GCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGTAAAGATTTGTGTGTaGGCATGTGAATGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNVKICV*ACECRC
Trigger: GCACCTGCATTCACATGCGCACACACAAATCTTTAC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATTTGATGCTGATTGTGTaGAGTGCAGTTTTGTTTTGG +
Preference number: 4 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHLMLIV*SAVLFW
Trigger: CCAAAACAAAACTGCACTCCACACAATCAGCATCAA...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTAAGCGGTTTGTACTTTaGCTCAACACTTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFKRFVL*LNTLGR
Trigger: TCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR TCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACATCTTCAGACTCCATTaGCCACAGCCTTTCATCTTT +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNIFRLH*PQPFIF
Trigger: AAAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGAT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGAGTGCAGTTTTGTTTTaGGAAGTTATACCACAGGGT +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRSAVLF*EVIPQG
Trigger: ACCCTGTGGTATAACTTCCCAAAACAAAACTGCACT...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGTTGATGCTGATTGTGTaGAGTGCAGTTTTGTTTTGG +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRLMLIV*SAVLFW
Trigger: CCAAAACAAAACTGCACTCCACACAATCAGCATCAA...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACAACTGGGATGACATTTaGATACACATTCACTGGGCA +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNNWDDI*IHIHWA
Trigger: TGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTAACTGGGATGACATTTaGATACACATTCACTGGGCA +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFNWDDI*IHIHWA
Trigger: TGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATATGTATTTCCAGGTTCTaGAGAAGCATCTTCAGACTC +
Preference number: 4 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKICISRF*RSIFRL
Trigger: GAGTCTGAAGATGCTTCTCCAGAACCTGGAAATACA...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
3UTR CAA 72 bp AGCTATGGATATTGCCCAGGACTTTTATGTATAGCATaGTATTGCAACATCGAAAGGCTGGACATCTTTGCT +
Preference number: 4 (lower is better)
Translates to: SYGYCPGLLCIA*YCNIERLDIFA
Trigger: AGCAAAGATGTCCAGCCTTTCGATGTTGCAATACAATGCTATACATAAAAGTCCTGGGCAATATCCATAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CCA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTAGTGCAGTTTTGTTTTaGGAAGTTATACCACAGGGT +
Preference number: 4 (lower is better)
Translates to: STEADQQNKLCVERIKIFSAVLF*EVIPQG
Trigger: ACCCTGTGGTATAACTTCCCAAAACAAAACTGCACT...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTGGATACACATTCACTaGGCAGATGTAGCTCAAAAA +
Preference number: 4 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNWIHIH*ADVAQK
Trigger: TTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CCA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCAAGATGGATTGTTCTaGCTCTCTTCAATTTTCCAA +
Preference number: 4 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRQDGLF*LSSIFQ
Trigger: TTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTG...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
3UTR CAA 72 bp TTCATCATTCAAGTACCAGGCAATAAGGGCAGGAGGTaGGTACTATCATCATTTTATATCTACATGACAGAT +
Preference number: 4 (lower is better)
Translates to: FIIQVPGNKGRR*VLSSFYIYMTD
Trigger: ATCTGTCATGTAGATATAAAATGATGATAGTACCAACCTCCTGCCCTTATTGCCTGGTACTTGAATGATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS CCA 90 bp AAGACTTCCCACTGTGGTATGTCCACATCCGGATCAGCATTTTGCTaGACGAGTGTCGAGGGGCCCAGACCTCCCTGCAGTGAGGGTGGT +
Preference number: 5 (lower is better)
Translates to: KTSHCGMSTSGSAFC*TSVEGPRPPCSEGG
Trigger: ACCACCCTCACTGCAGGGAGGTCTGGGCCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCCACACACTCTCTGCTTaGCAGCCTCCTGGGCTTTGT +
Preference number: 5 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVHTLSA*QPPGLC
Trigger: ACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTG...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS GCA 90 bp AAGAAGACTTCCCACTGTGGTATGTCCACATCCGGATCAGCATTTTaGTGGACGAGTGTCGAGGGGCCCAGACCTCCCTGCAGTGAGGGT +
Preference number: 5 (lower is better)
Translates to: KKTSHCGMSTSGSAF*WTSVEGPRPPCSEG
Trigger: ACCCTCACTGCAGGGAGGTCTGGGCCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CCA 90 bp GGAAGTAGGCACGGGCTTTCAGGTTCTCCCTGTCGAAGCGGTCAATaGAGATGGTTGGATACTCCGCCATCTGTCCCTGGAAGGAGCTCA +
Preference number: 5 (lower is better)
Translates to: GSRHGLSGSPCRSGQ*RWLDTPPSVPGRSS
Trigger: TGAGCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACCTGAAAGCCCGTGCCTACTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACGCAGCCTCCTGGGCTTaGTCTCAGTTCAGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDAASWA*SQFRLV
Trigger: GACCAGCCTGAACTGAGACAAAGCCCAGGAGGCTGC...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAAACACTCTTCTGCCTTaGGGTGGCGGCAGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQNTLLP*GGGRRG
Trigger: TCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGTT...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GGTCATAAGGACAGCAGCGCGGGTAATGTGGTGACAGGGATGGGCCTGGATGTCGTGGCAGTGCCTTCATaGAAAACAGCTCAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: GHKDSSAGNVVTGMGLDVVAVPS*KTAQAE
Trigger: TTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCAC...GACATCCAGGCCCATCCCTGTCACCACATTACCCGCGCTGCTGTCCTTATGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS TCA 90 bp ATGGAGGCCAGAAGCTGGAGTTTGAGGCTAGGGAGGTGGCTAGCTTaGATGTTGGGAGTGAACTCTGGCCCTCCAAAAGACCACAGCTAC +
Preference number: 5 (lower is better)
Translates to: MEARSWSLRLGRWLA*MLGVNSGPPKDHSY
Trigger: GTAGCTGTGGTCTTTTGGAGGGCCAGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS-3UTR CAA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACCACACACTCTCTGCTTaGCAGCCTCCTGGGCTTTGT +
Preference number: 5 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDHTLSA*QPPGLC
Trigger: ACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTG...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 90 bp CACTGCAGAGCTTTGGTGAGTCACTGCAGAGCTTTGGTGAGTCACTaGAGAGCTTTGGTGACTGAGATCCCCCTGTCTCTATGGAGGAAG +
Preference number: 5 (lower is better)
Translates to: HCRALVSHCRALVSH*RALVTEIPLSLWRK
Trigger: CTTCCTCCATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 90 bp AGGGGATTTCAAAGTCAGAGGAGCTCTGTGAGTCTGCACGTGTGCTaGTTAGCAATGTCTTCTCAGGTGGAGACTTCCTGCCACTCAGGG +
Preference number: 5 (lower is better)
Translates to: RGFQSQRSSVSLHVC*LAMSSQVETSCHSG
Trigger: CCCTGAGTGGCAGGAAGTCTCCACCTGAGAAGACATTGCTAAGCAGCACACGTGCAGACTCACAGAGCTCCTCTGACTTTGAAATCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp ACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCACTTTGGCTCAACACTTaGGGGAGACCGGCACAGAGG +
Preference number: 5 (lower is better)
Translates to: TSVSTLQATYIHSYGYCPLWLNT*GRPAQR
Trigger: CCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAG...TGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGAGGTCAATGGAGATGGTaGGATACTCCGCCATCTGTC +
Preference number: 5 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGGQWRW*DTPPSV
Trigger: GACAGATGGCGGAGTATCCAACCATCTCCATTGACC...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGAACACTCTTCTGCCTTaGGGTGGCGGCAGGCGTGGA +
Preference number: 5 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQNTLLP*GGGRRG
Trigger: TCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGTT...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACGTGGCAGTGCCTTCATaGAAAACAGCTCAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDVAVPS*KTAQAE
Trigger: TTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCAC...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTAGTCACTGCAGAGCTTaGGTGACTGAGATCCCCCTG +
Preference number: 5 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFSHCRA*VTEIPL
Trigger: CAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACT...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 90 bp GGGAGTGAACTCTGGCCCTCCAAAAGACCACAGCTACCCTTTACCTaGCCAGCCATCTTCCAGCCCCTGTTCTCAAATATATGTTTCTCT +
Preference number: 5 (lower is better)
Translates to: GSELWPSKRPQLPFT*PAIFQPLFSNICFS
Trigger: AGAGAAACATATATTTGAGAACAGGGGCTGGAAGATGGCTGGGCAGGTAAAGGGTAGCTGTGGTCTTTTGGAGGGCCAGAGTTCACTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS GCA 90 bp TTGAGGGGATTTCAAAGTCAGAGGAGCTCTGTGAGTCTGCACGTGTaGTGCTTAGCAATGTCTTCTCAGGTGGAGACTTCCTGCCACTCA +
Preference number: 5 (lower is better)
Translates to: LRGFQSQRSSVSLHV*CLAMSSQVETSCHS
Trigger: TGAGTGGCAGGAAGTCTCCACCTGAGAAGACATTGCTAAGCAGCACACGTGCAGACTCACAGAGCTCCTCTGACTTTGAAATCCCCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAAGCTGGTACGGAACTTaGTGCCTTAAAGGTGTCGGT +
Preference number: 5 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQSWYGT*CLKGVG
Trigger: ACCGACACCTTTAAGGCACAAAGTTCCGTACCAGCT...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAAGTGGCAGTGCCTTCATaGAAAACAGCTCAGGCTGAA +
Preference number: 5 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQVAVPS*KTAQAE
Trigger: TTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCAC...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTCTCCACTGTCGCTGTaGGATTCTTCACAGTCTATG +
Preference number: 5 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDSPLSL*DSSQSM
Trigger: CATAGACTGTGAAGAATCCAACAGCGACAGTGGAGA...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS TCA 90 bp TCAGGCTGGTCTAGTGGCAGTGCCTTCATTGAAAACAGCTCAGGCTaGAGAGTTAGCTGGTACGGAACTTTGTGCCTTAAAGGTGTCGGT +
Preference number: 5 (lower is better)
Translates to: SGWSSGSAFIENSSG*RVSWYGTLCLKGVG
Trigger: ACCGACACCTTTAAGGCACAAAGTTCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCACTAGACCAGCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS TCA 90 bp GAGTCACTGCAGAGCTTTGGTGAGTCACTGCAGAGCTTTGGTGACTaGGATCCCCCTGTCTCTATGGAGGAAGGTAAGTGTTCCAAACAT +
Preference number: 5 (lower is better)
Translates to: ESLQSFGESLQSFGD*DPPVSMEEGKCSKH
Trigger: ATGTTTGGAACACTTACCTTCCTCCATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 90 bp ATGAATTCTGGGAAGAGATATGGGTGGAGTCTCCATCAGAGTCACTaGAGAGCTTTGGTGAGTCACTGCAGAGCTTTGGTGAGTCACTGC +
Preference number: 5 (lower is better)
Translates to: MNSGKRYGWSLHQSH*RALVSHCRALVSHC
Trigger: GCAGTGACTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACTCTGATGGAGACTCCACCCATATCTCTTCCCAGAATTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp GTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACGAGTGCAGTTTTGTTTaGGGAAGTTATACCACAGGG +
Preference number: 5 (lower is better)
Translates to: VCLPSRPHTSTAMDIAQDECSFV*GSYTTG
Trigger: CCCTGTGGTATAACTTCCCAAAACAAAACTGCACTC...GTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACACATGGTAGATGGCTaGATGCTGATTGTGTGGAGT +
Preference number: 5 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGHMVDG*MLIVWS
Trigger: ACTCCACACAATCAGCATCAAGCCATCTACCATGTG...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAACACATGGTAGATGGCTaGATGCTGATTGTGTGGAGT +
Preference number: 5 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQHMVDG*MLIVWS
Trigger: ACTCCACACAATCAGCATCAAGCCATCTACCATGTG...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp ACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCACTGGCTGTCCCAGCCTaGACTTCCTTGATCTGTTAT +
Preference number: 5 (lower is better)
Translates to: TSVSTLQATYIHSYGYCPLAVPA*TSLICY
Trigger: ATAACAGATCAAGGAAGTCAAGGCTGGGACAGCCAG...TGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACGCTCCGCTTCGGGAGTaGAGGGGATTTCAAAGTCAG +
Preference number: 5 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHAPLRE*RGFQSQ
Trigger: CTGACTTTGAAATCCCCTCAACTCCCGAAGCGGAGC...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS TCA 90 bp GCAGTTTTGTTTTGGGAAGTTATACCACAGGGTAGTTTATTCCACTaGAAACACTCTTCTGCCTTTGGGTGGCGGCAGGCGTGGATCTGG +
Preference number: 5 (lower is better)
Translates to: AVLFWEVIPQGSLFH*KHSSAFGWRQAWIW
Trigger: CCAGATCCACGCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAGTGGAATAAACTACCCTGTGGTATAACTTCCCAAAACAAAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATCTTTGGCTCAACACTTaGGGGAGACCGGCACAGAGG +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHLWLNT*GRPAQR
Trigger: CCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAG...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TCAGACTCAGAGATCCACCTGCCTTGCCTCTACCTCCCAAGTGCTGAGATTCAACCGAGTCAAGATGGATaGTTCTGGCTCTCTTCAATT +
Preference number: 5 (lower is better)
Translates to: SDSEIHLPCLYLPSAEIQPSQDG*FWLSSI
Trigger: AATTGAAGAGAGCCAGAACAATCCATCTTGACTCGG...TTGAATCTCAGCACTTGGGAGGTAGAGGCAAGGCAGGTGGATCTCTGAGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATAGCTGGTACGGAACTTaGTGCCTTAAAGGTGTCGGT +
Preference number: 5 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYSWYGT*CLKGVG
Trigger: ACCGACACCTTTAAGGCACAAAGTTCCGTACCAGCT...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGCAGCCTCCTGGGCTTaGTCTCAGTTCAGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRAASWA*SQFRLV
Trigger: GACCAGCCTGAACTGAGACAAAGCCCAGGAGGCTGC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS CCA 90 bp GCTCTCTTCAATTTTCCAAGCGGTTTGTACTTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGCTTTAAAACGTCCATGACCTTATCC +
Preference number: 5 (lower is better)
Translates to: ALFNFPSGLYFGSTL*GDRHRGFKTSMTLS
Trigger: GGATAAGGTCATGGACGTTTTAAAGCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CCA 90 bp CTGTTATATGGGTTGACTGAGATGAATTCTGGGAAGAGATATGGGTaGAGTCTCCATCAGAGTCACTGCAGAGCTTTGGTGAGTCACTGC +
Preference number: 5 (lower is better)
Translates to: LLYGLTEMNSGKRYG*SLHQSHCRALVSHC
Trigger: GCAGTGACTCACCAAAGCTCTGCAGTGACTCTGATGGAGACTCCACCCATATCTCTTCCCAGAATTCATCTCAGTCAACCCATATAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACACATGGTAGATGGCTaGATGCTGATTGTGTGGAGT +
Preference number: 5 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPHMVDG*MLIVWS
Trigger: ACTCCACACAATCAGCATCAAGCCATCTACCATGTG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCTTTGGCTCAACACTTaGGGGAGACCGGCACAGAGG +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRLWLNT*GRPAQR
Trigger: CCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAG...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGCAGCCTCCTGGGCTTaGTCTCAGTTCAGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNAASWA*SQFRLV
Trigger: GACCAGCCTGAACTGAGACAAAGCCCAGGAGGCTGC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGAGATCTGTTATATGGGTaGACTGAGATGAATTCTGGG +
Preference number: 5 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGDLLYG*TEMNSG
Trigger: CCCAGAATTCATCTCAGTCAACCCATATAACAGATC...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp AGTGTGTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGATGCATCCTGTTCTATTaGAGAGGCAGAAATACTCTC +
Preference number: 5 (lower is better)
Translates to: SVSTLQATYIHSYGYCPGCILFY*RGRNTL
Trigger: GAGAGTATTTCTGCCTCTCAAATAGAACAGGATGCA...TCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGACACACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CCA 90 bp GTCCACTGTGATTTCATCTCTTCTTTTGAAGAAGACTTCCCACTGTaGTATGTCCACATCCGGATCAGCATTTTGCTGGACGAGTGTCGA +
Preference number: 5 (lower is better)
Translates to: VHCDFISSFEEDFPL*YVHIRISILLDECR
Trigger: TCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAAACACTGCTCACGACTaGGGATCTGATAAAACCTTG +
Preference number: 5 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPNTAHD*GSDKTL
Trigger: CAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTT...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTCTTTGGCTCAACACTTaGGGGAGACCGGCACAGAGG +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFLWLNT*GRPAQR
Trigger: CCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAG...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCACATCTTCAGACTCCATaGACCACAGCCTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPHLQTP*TTAFHL
Trigger: AAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGATG...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GTCTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTCTATACTTTGACCTGTaGCCAGTTTCCTGTATAAGC +
Preference number: 5 (lower is better)
Translates to: VYPPGHIHPQLWILPRTFLYFDL*PVSCIS
Trigger: GCTTATACAGGAAACTGGCAACAGGTCAAAGTATAG...AAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 90 bp GGGTGTCTAGTTCTACAAGACAAGGGGCTCCATTTACTTCAGCTCTaGTTTTCAAATCACAGTGAGTATCTTGTGGACACAGTGCATCCT +
Preference number: 5 (lower is better)
Translates to: GCLVLQDKGLHLLQL*FSNHSEYLVDTVHP
Trigger: AGGATGCACTGTGTCCACAAGATACTCACTGTGATTTGAAAAGCAGAGCTGAAGTAAATGGAGCCCCTTGTCTTGTAGAACTAGACACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CCA 90 bp TTCACCTGTGATTTCATCTCTTCTTTTGAAGAAGACTTCCCACTGTaGTATGTCCACATCCGGATCAGCATTTTGCTGGACGAGTGTCGA +
Preference number: 5 (lower is better)
Translates to: FTCDFISSFEEDFPL*YVHIRISILLDECR
Trigger: TCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGGTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGGCCACATACATCCACAACACTGCTCACGACTaGGGATCTGATAAAACCTTG +
Preference number: 5 (lower is better)
Translates to: FLVVDLTSVSTLQATYIHNTAHD*GSDKTL
Trigger: CAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTT...GTGGATGTATGTGGCCTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp CTACCCTCCAGGCCACATACATCCACAGCTATGGATATTGCCCAGGACTTTTATGTGTGGAGTGCAGTTTaGTTTTGGGAAGTTATACCA +
Preference number: 5 (lower is better)
Translates to: LPSRPHTSTAMDIAQDFYVWSAV*FWEVIP
Trigger: TGGTATAACTTCCCAAAACAAAACTGCACTCCACAC...ATAAAAGTCCTGGGCAATATCCATAGCTGTGGATGTATGTGGCCTGGAGGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp CAACAGAATGAGTTCAGGATAGCACAAGGGGTACACAGAGAAACCCTGTCTCCAGTGTGGAGTGCAGTTTaGTTTTGGGAAGTTATACCA +
Preference number: 5 (lower is better)
Translates to: QQNEFRIAQGVHRETLSPVWSAV*FWEVIP
Trigger: TGGTATAACTTCCCAAAACAAAACTGCACTCCACAC...TGGAGACAGGGTTTCTCTGTGTACCCCTTGTGCTATCCTGAACTCATTCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGCCGAGTCAAGATGGATaGTTCTGGCTCTCTTCAATT +
Preference number: 5 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQPSQDG*FWLSSI
Trigger: AATTGAAGAGAGCCAGAACAATCCATCTTGACTCGG...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATAGCTGGTACGGAACTTaGTGCCTTAAAGGTGTCGGT +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHSWYGT*CLKGVG
Trigger: ACCGACACCTTTAAGGCACAAAGTTCCGTACCAGCT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTCACACACTCTCTGCTTaGCAGCCTCCTGGGCTTTGT +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFHTLSA*QPPGLC
Trigger: ACAAAGCCCAGGAGGCTGCAAAGCAGAGAGTGTGTG...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS CCA 90 bp CATCAAAGAGATCATCGTCTTCCTCCGAGTCAAGATGGATTGTTCTaGCTCTCTTCAATTTTCCAAGCGGTTTGTACTTTGGCTCAACAC +
Preference number: 5 (lower is better)
Translates to: HQRDHRLPPSQDGLF*LSSIFQAVCTLAQH
Trigger: GTGTTGAGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATCTCTTTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CCA 90 bp GGTAGAGGGTCATCAAAGAGATCATCGTCTTCCTCCGAGTCAAGATaGATTGTTCTGGCTCTCTTCAATTTTCCAAGCGGTTTGTACTTT +
Preference number: 5 (lower is better)
Translates to: GRGSSKRSSSSSESR*IVLALFNFPSGLYF
Trigger: AAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATCTCTTTGATGACCCTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGGTCAATGGAGATGGTaGGATACTCCGCCATCTGTC +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFGQWRW*DTPPSV
Trigger: GACAGATGGCGGAGTATCCAACCATCTCCATTGACC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGGTCAATGGAGATGGTaGGATACTCCGCCATCTGTC +
Preference number: 5 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNGQWRW*DTPPSV
Trigger: GACAGATGGCGGAGTATCCAACCATCTCCATTGACC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
CDS-3UTR CAA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGTTCGACAACTATACTTaGACCTGTTGCCAGTTTCCT +
Preference number: 5 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQFDNYT*TCCQFP
Trigger: AGGAAACTGGCAACAGGTCAAAGTATAGTTGTCGAA...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATAACACTGCTCACGACTaGGGATCTGATAAAACCTTG +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHNTAHD*GSDKTL
Trigger: CAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATCCGAGTCAAGATGGATaGTTCTGGCTCTCTTCAATT +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHPSQDG*FWLSSI
Trigger: AATTGAAGAGAGCCAGAACAATCCATCTTGACTCGG...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGTCTCCACTGTCGCTGTaGGATTCTTCACAGTCTATG +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRSPLSL*DSSQSM
Trigger: CATAGACTGTGAAGAATCCAACAGCGACAGTGGAGA...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS TCA 90 bp GACACAGTGCATCCTGTTCTATTTGAGAGGCAGAAATACTCTCTTTaGGTTTTGGTTTGTAGGCACCCTTGTTTAAAGAGGTACTATCCC +
Preference number: 5 (lower is better)
Translates to: DTVHPVLFERQKYSL*VLVCRHPCLKRYYP
Trigger: GGGATAGTACCTCTTTAAACAAGGGTGCCTACAAACCAAAACTCAAAGAGAGTATTTCTGCCTCTCAAATAGAACAGGATGCACTGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGGATCTGATAAAACCTaGGGTCACAGAAAGTCGTGT +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRGSDKT*GHRKSC
Trigger: ACACGACTTTCTGTGACCCAAGGTTTTATCAGATCC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGGAGTGCAGTTTTGTTTaGGGAAGTTATACCACAGGG +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRECSFV*GSYTTG
Trigger: CCCTGTGGTATAACTTCCCAAAACAAAACTGCACTC...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATGTGTGGAGTGCAGTTTaGTTTTGGGAAGTTATACCA +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHVWSAV*FWEVIP
Trigger: TGGTATAACTTCCCAAAACAAAACTGCACTCCACAC...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CCACAATTTACTTTCCACAGTTTCACTTGCCTACTTAGCTCTGGTCCAAAAATACACATGGTAGATGGCTaGATGCTGATTGTGTGGAGT +
Preference number: 5 (lower is better)
Translates to: PQFTFHSFTCLLSSGPKIHMVDG*MLIVWS
Trigger: ACTCCACACAATCAGCATCAAGCCATCTACCATGTG...TATTTTTGGACCAGAGCTAAGTAGGCAAGTGAAACTGTGGAAAGTAAATTGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061852.12
CDS-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACTCTCCACTGTCGCTGTaGGATTCTTCACAGTCTATG +
Preference number: 5 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNSPLSL*DSSQSM
Trigger: CATAGACTGTGAAGAATCCAACAGCGACAGTGGAGA...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp GTGTCACTCTGCAGATTTCTTGTGGTTGATCTAACAAGTGTGTCTACCCTCCAGATTTCATCTCTTCTTTaGAAGAAGACTTCCCACTGT +
Preference number: 5 (lower is better)
Translates to: VSLCRFLVVDLTSVSTLQISSLL*KKTSHC
Trigger: ACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAAT...CTGGAGGGTAGACACACTTGTTAGATCAACCACAAGAAATCTGCAGAGTGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS-3UTR CAA 90 bp TGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCATCTTCAGACTCCATaGACCACAGCCTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: CDPNLQVFSVFIDNLDTRHLQTP*TTAFHL
Trigger: AAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGATG...CCGAGTATCAAGGTTATCGATGAAAACACTAAACACCTGAAGATTTGGGTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGGATCTGATAAAACCTaGGGTCACAGAAAGTCGTGT +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFGSDKT*GHRKSC
Trigger: ACACGACTTTCTGTGACCCAAGGTTTTATCAGATCC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACAACACTGCTCACGACTaGGGATCTGATAAAACCTTG +
Preference number: 5 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNNTAHD*GSDKTL
Trigger: CAAGGTTTTATCAGATCCCAAGTCGTGAGCAGTGTT...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTGAGTGCAGTTTTGTTTaGGGAAGTTATACCACAGGG +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFECSFV*GSYTTG
Trigger: CCCTGTGGTATAACTTCCCAAAACAAAACTGCACTC...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp AGTACGGAGGCGGATCAACAAAACAAACTATGTGTGGAGAGGATAAAAATCTTTCATCTTCAGACTCCATaGACCACAGCCTTTCATCTT +
Preference number: 5 (lower is better)
Translates to: STEADQQNKLCVERIKIFHLQTP*TTAFHL
Trigger: AAGATGAAAGGCTGTGGTCAATGGAGTCTGAAGATG...AAAGATTTTTATCCTCTCCACACATAGTTTGTTTTGTTGATCCGCCTCCGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp TCATTCCAGCACTTGCTGCAGATACAACATTCTTACAAGTTCCTTACATTCAACGTGTGGAGTGCAGTTTaGTTTTGGGAAGTTATACCA +
Preference number: 5 (lower is better)
Translates to: SFQHLLQIQHSYKFLTFNVWSAV*FWEVIP
Trigger: TGGTATAACTTCCCAAAACAAAACTGCACTCCACAC...GTTGAATGTAAGGAACTTGTAAGAATGTTGTATCTGCAGCAAGTGCTGGAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS-3UTR CAA 90 bp CTGGATTTCTCAATGAATGTCATCATGGCAGGCATTCTGACTAGTGCATACCATATTTCATCTCTTCTTTaGAAGAAGACTTCCCACTGT +
Preference number: 5 (lower is better)
Translates to: LDFSMNVIMAGILTSAYHISSLL*KKTSHC
Trigger: ACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAAT...ATGGTATGCACTAGTCAGAATGCCTGCCATGATGACATTCATTGAGAAATCCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS GCA 72 bp TCCCACTGTGGTATGTCCACATCCGGATCAGCATTTTaGTGGACGAGTGTCGAGGGGCCCAGACCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: SHCGMSTSGSAF*WTSVEGPRPPC
Trigger: GCAGGGAGGTCTGGGCCCCTCGACACTCGTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CCA 72 bp CACGGGCTTTCAGGTTCTCCCTGTCGAAGCGGTCAATaGAGATGGTTGGATACTCCGCCATCTGTCCCTGGA +
Preference number: 6 (lower is better)
Translates to: HGLSGSPCRSGQ*RWLDTPPSVPG
Trigger: TCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACCTGAAAGCCCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
CDS CCA 72 bp CAGGTTCTCCCTGTCGAAGCGGTCAATGGAGATGGTTaGATACTCCGCCATCTGTCCCTGGAAGGAGCTCAT +
Preference number: 6 (lower is better)
Translates to: QVLPVEAVNGDG*ILRHLSLEGAH
Trigger: ATGAGCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
CDS CCA 72 bp CTTTCAGGTTCTCCCTGTCGAAGCGGTCAATGGAGATaGTTGGATACTCCGCCATCTGTCCCTGGAAGGAGC +
Preference number: 6 (lower is better)
Translates to: LSGSPCRSGQWR*LDTPPSVPGRS
Trigger: GCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACCTGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
CDS CAA 72 bp TCAGGTTCTCCCTGTCGAAGCGGTCAATGGAGATGGTaGGATACTCCGCCATCTGTCCCTGGAAGGAGCTCA +
Preference number: 6 (lower is better)
Translates to: SGSPCRSGQWRW*DTPPSVPGRSS
Trigger: TGAGCTCCTTCCAGGGACAGATGGCGGAGTATCCAACCATCTCCATTGACCGCTTCGACAGGGAGAACCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
CDS CAA 90 bp CATGGAGGCCAGAAGCTGGAGTTTGAGGCTAGGGAGGTGGCTAGCTaGAATGTTGGGAGTGAACTCTGGCCCTCCAAAAGACCACAGCTA +
Preference number: 6 (lower is better)
Translates to: HGGQKLEFEAREVAS*NVGSELWPSKRPQL
Trigger: TAGCTGTGGTCTTTTGGAGGGCCAGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCTCAAACTCCAGCTTCTGGCCTCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS GCA 72 bp GGGAAGAGATATGGGTGGAGTCTCCATCAGAGTCACTaGAGAGCTTTGGTGAGTCACTGCAGAGCTTTGGTG +
Preference number: 6 (lower is better)
Translates to: GKRYGWSLHQSH*RALVSHCRALV
Trigger: CACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACTCTGATGGAGACTCCACCCATATCTCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 72 bp CAAAGTCAGAGGAGCTCTGTGAGTCTGCACGTGTGCTaGTTAGCAATGTCTTCTCAGGTGGAGACTTCCTGC +
Preference number: 6 (lower is better)
Translates to: QSQRSSVSLHVC*LAMSSQVETSC
Trigger: GCAGGAAGTCTCCACCTGAGAAGACATTGCTAAGCAGCACACGTGCAGACTCACAGAGCTCCTCTGACTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CCA 72 bp GCTTTGCAGCCTCCTGGGCTTTGTCTCAGTTCAGGCTaGTCTAGTGGCAGTGCCTTCATTGAAAACAGCTCA +
Preference number: 6 (lower is better)
Translates to: ALQPPGLCLSSG*SSGSAFIENSS
Trigger: TGAGCTGTTTTCAATGAAGGCACTGCCACTAGACCAGCCTGAACTGAGACAAAGCCCAGGAGGCTGCAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CAA 72 bp CAGAAGCTGGAGTTTGAGGCTAGGGAGGTGGCTAGCTaGAATGTTGGGAGTGAACTCTGGCCCTCCAAAAGA +
Preference number: 6 (lower is better)
Translates to: QKLEFEAREVAS*NVGSELWPSKR
Trigger: TCTTTTGGAGGGCCAGAGTTCACTCCCAACATTCAAGCTAGCCACCTCCCTAGCCTCAAACTCCAGCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CAA 72 bp AGTCACTGCAGAGCTTTGGTGAGTCACTGCAGAGCTTaGGTGACTGAGATCCCCCTGTCTCTATGGAGGAAG +
Preference number: 6 (lower is better)
Translates to: SHCRALVSHCRA*VTEIPLSLWRK
Trigger: CTTCCTCCATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CAA 90 bp GCTTTGGTGAGTCACTGCAGAGCTTTGGTGAGTCACTGCAGAGCTTaGGTGACTGAGATCCCCCTGTCTCTATGGAGGAAGGTAAGTGTT +
Preference number: 6 (lower is better)
Translates to: ALVSHCRALVSHCRA*VTEIPLSLWRKVSV
Trigger: AACACTTACCTTCCTCCATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTGCAGTGACTCACCAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS TCA 72 bp CAGAGCTTTGGTGAGTCACTGCAGAGCTTTGGTGACTaGGATCCCCCTGTCTCTATGGAGGAAGGTAAGTGT +
Preference number: 6 (lower is better)
Translates to: QSFGESLQSFGD*DPPVSMEEGKC
Trigger: ACACTTACCTTCCTCCATAGAGACAGGGGGATCTCAGTCACCAAAGCTCTGCAGTGACTCACCAAAGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 72 bp TGCTGCTTAGCAATGTCTTCTCAGGTGGAGACTTCCTaGCACTCAGGGTGTCTAGTTCTACAAGACAAGGGG +
Preference number: 6 (lower is better)
Translates to: CCLAMSSQVETS*HSGCLVLQDKG
Trigger: CCCCTTGTCTTGTAGAACTAGACACCCTGAGTGGCAGGAAGTCTCCACCTGAGAAGACATTGCTAAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CAA 90 bp CTGGGCTTTGTCTCAGTTCAGGCTGGTCTAGTGGCAGTGCCTTCATaGAAAACAGCTCAGGCTGAAGAGTTAGCTGGTACGGAACTTTGT +
Preference number: 6 (lower is better)
Translates to: LGFVSVQAGLVAVPS*KTAQAEELAGTELC
Trigger: ACAAAGTTCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCACTAGACCAGCCTGAACTGAGACAAAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CCA 72 bp GGGTTGACTGAGATGAATTCTGGGAAGAGATATGGGTaGAGTCTCCATCAGAGTCACTGCAGAGCTTTGGTG +
Preference number: 6 (lower is better)
Translates to: GLTEMNSGKRYG*SLHQSHCRALV
Trigger: CACCAAAGCTCTGCAGTGACTCTGATGGAGACTCCACCCATATCTCTTCCCAGAATTCATCTCAGTCAACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS TCA 72 bp TTTTGGGAAGTTATACCACAGGGTAGTTTATTCCACTaGAAACACTCTTCTGCCTTTGGGTGGCGGCAGGCG +
Preference number: 6 (lower is better)
Translates to: FWEVIPQGSLFH*KHSSAFGWRQA
Trigger: CGCCTGCCGCCACCCAAAGGCAGAAGAGTGTTTTCAGTGGAATAAACTACCCTGTGGTATAACTTCCCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CAA 72 bp TGGATTGTTCTGGCTCTCTTCAATTTTCCAAGCGGTTaGTACTTTGGCTCAACACTTTGGGGAGACCGGCAC +
Preference number: 6 (lower is better)
Translates to: WIVLALFNFPSG*YFGSTLWGDRH
Trigger: GTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CAA 90 bp GAGTCAAGATGGATTGTTCTGGCTCTCTTCAATTTTCCAAGCGGTTaGTACTTTGGCTCAACACTTTGGGGAGACCGGCACAGAGGCTTT +
Preference number: 6 (lower is better)
Translates to: ESRWIVLALFNFPSG*YFGSTLWGDRHRGF
Trigger: AAAGCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CAA 90 bp CACACTGGCTGTCCCAGCCTTGACTTCCTTGATCTGTTATATGGGTaGACTGAGATGAATTCTGGGAAGAGATATGGGTGGAGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: HTGCPSLDFLDLLYG*TEMNSGKRYGWSLH
Trigger: ATGGAGACTCCACCCATATCTCTTCCCAGAATTCATCTCAGTCAACCCATATAACAGATCAAGGAAGTCAAGGCTGGGACAGCCAGTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CCA 72 bp AATTTTCCAAGCGGTTTGTACTTTGGCTCAACACTTTaGGGAGACCGGCACAGAGGCTTTAAAACGTCCATG +
Preference number: 6 (lower is better)
Translates to: NFPSGLYFGSTL*GDRHRGFKTSM
Trigger: CATGGACGTTTTAAAGCCTCTGTGCCGGTCTCCCCAAAGTGTTGAGCCAAAGTACAAACCGCTTGGAAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CAA 72 bp GGTGGTGGGGTTTCTAGCTCTTCTCCACTGTCGCTGTaGGATTCTTCACAGTCTATGAAGTTAGCCAAAGAA +
Preference number: 6 (lower is better)
Translates to: GGGVSSSSPLSL*DSSQSMKLAKE
Trigger: TTCTTTGGCTAACTTCATAGACTGTGAAGAATCCAACAGCGACAGTGGAGAAGAGCTAGAAACCCCACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CAA 90 bp GAGGGTCATCAAAGAGATCATCGTCTTCCTCCGAGTCAAGATGGATaGTTCTGGCTCTCTTCAATTTTCCAAGCGGTTTGTACTTTGGCT +
Preference number: 6 (lower is better)
Translates to: EGHQRDHRLPPSQDG*FWLSSIFQAVCTLA
Trigger: AGCCAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATCTCTTTGATGACCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CAA 90 bp CTGGGAGTTCTAATCATGGTGTCCACTGTGATTTCATCTCTTCTTTaGAAGAAGACTTCCCACTGTGGTATGTCCACATCCGGATCAGCA +
Preference number: 6 (lower is better)
Translates to: LGVLIMVSTVISSLL*KKTSHCGMSTSGSA
Trigger: TGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGTGGACACCATGATTAGAACTCCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061852.12
ENSMUST00000115066.8
CDS TCA 72 bp TCTAGTGGCAGTGCCTTCATTGAAAACAGCTCAGGCTaGAGAGTTAGCTGGTACGGAACTTTGTGCCTTAAA +
Preference number: 6 (lower is better)
Translates to: SSGSAFIENSSG*RVSWYGTLCLK
Trigger: TTTAAGGCACAAAGTTCCGTACCAGCTAACTCTTCAGCCTGAGCTGTTTTCAATGAAGGCACTGCCACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS GCA 72 bp TTTTTAAAGGTAAAGATTTGTGTGTGCGCATGTGAATaGAGGTGCCATGGAGGCCAGAAGCTGGAGTTTGAG +
Preference number: 6 (lower is better)
Translates to: FLKVKICVCACE*RCHGGQKLEFE
Trigger: CTCAAACTCCAGCTTCTGGCCTCCATGGCACCTGCATTCACATGCGCACACACAAATCTTTACCTTTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000115066.8
CDS CCA 72 bp GGTTTTTCTGGTCCTCTCTCCAAACCACATGGTAGATaGCTTGATGCTGATTGTGTGGAGTGCAGTTTTGTT +
Preference number: 6 (lower is better)
Translates to: GFSGPLSKPHGR*LDADCVECSFV
Trigger: AACAAAACTGCACTCCACACAATCAGCATCAAGCCATCTACCATGTGGTTTGGAGAGAGGACCAGAAAAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CCA 72 bp GACCTTATCCACAGTGAGGCCAACTGGGATGACATTTaGATACACATTCACTGGGCAGATGTAGCTCAAAAA +
Preference number: 6 (lower is better)
Translates to: DLIHSEANWDDI*IHIHWADVAQK
Trigger: TTTTTGAGCTACATCTGCCCAGTGAATGTGTATCCAAATGTCATCCCAGTTGGCCTCACTGTGGATAAGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061852.12
ENSMUST00000100463.10
ENSMUST00000102988.10
ENSMUST00000115066.8
ENSMUST00000129657.2
CDS CCA 72 bp GATCATCGTCTTCCTCCGAGTCAAGATGGATTGTTCTaGCTCTCTTCAATTTTCCAAGCGGTTTGTACTTTG +
Preference number: 6 (lower is better)
Translates to: DHRLPPSQDGLF*LSSIFQAVCTL
Trigger: CAAAGTACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CCA 72 bp GATTTCATCTCTTCTTTTGAAGAAGACTTCCCACTGTaGTATGTCCACATCCGGATCAGCATTTTGCTGGAC +
Preference number: 6 (lower is better)
Translates to: DFISSFEEDFPL*YVHIRISILLD
Trigger: GTCCAGCAAAATGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CAA 72 bp CAAAGAGATCATCGTCTTCCTCCGAGTCAAGATGGATaGTTCTGGCTCTCTTCAATTTTCCAAGCGGTTTGT +
Preference number: 6 (lower is better)
Translates to: QRDHRLPPSQDG*FWLSSIFQAVC
Trigger: ACAAACCGCTTGGAAAATTGAAGAGAGCCAGAACAATCCATCTTGACTCGGAGGAAGACGATGATCTCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061852.12
ENSMUST00000102988.10
ENSMUST00000115066.8
CDS CAA 90 bp GAAGGTAAGTGTTCCAAACATTCACCTGTGATTTCATCTCTTCTTTaGAAGAAGACTTCCCACTGTGGTATGTCCACATCCGGATCAGCA +
Preference number: 6 (lower is better)
Translates to: EGKCSKHSPVISSLL*KKTSHCGMSTSGSA
Trigger: TGCTGATCCGGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGGTGAATGTTTGGAACACTTACCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS GCA 72 bp GCTTTTCAAATCACAGTGAGTATCTTGTGGACACAGTaGATCCTGTTCTATTTGAGAGGCAGAAATACTCTC +
Preference number: 6 (lower is better)
Translates to: AFQITVSILWTQ*ILFYLRGRNTL
Trigger: GAGAGTATTTCTGCCTCTCAAATAGAACAGGATGCACTGTGTCCACAAGATACTCACTGTGATTTGAAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CAA 72 bp TGTTCCAAACATTCACCTGTGATTTCATCTCTTCTTTaGAAGAAGACTTCCCACTGTGGTATGTCCACATCC +
Preference number: 6 (lower is better)
Translates to: CSKHSPVISSLL*KKTSHCGMSTS
Trigger: GGATGTGGACATACCACAGTGGGAAGTCTTCTTCAAAAGAAGAGATGAAATCACAGGTGAATGTTTGGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS TCA 72 bp CATCCTGTTCTATTTGAGAGGCAGAAATACTCTCTTTaGGTTTTGGTTTGTAGGCACCCTTGTTTAAAGAGG +
Preference number: 6 (lower is better)
Translates to: HPVLFERQKYSL*VLVCRHPCLKR
Trigger: CCTCTTTAAACAAGGGTGCCTACAAACCAAAACTCAAAGAGAGTATTTCTGCCTCTCAAATAGAACAGGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10
CDS CAA 72 bp GTGAGTATCTTGTGGACACAGTGCATCCTGTTCTATTaGAGAGGCAGAAATACTCTCTTTGAGTTTTGGTTT +
Preference number: 6 (lower is better)
Translates to: VSILWTQCILFY*RGRNTLFEFWF
Trigger: AAACCAAAACTCAAAGAGAGTATTTCTGCCTCTCAAATAGAACAGGATGCACTGTGTCCACAAGATACTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102988.10