Pregenerated sensors for DCDC2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078552Ensembl transcript IDs: ENSMUST00000106037.3, ENSMUST00000179209.8
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCGGGGCTTGCACAGCTGATGTCACCTCATAAAGCAAAGCCTCCATaGTGGGGTAGCGGCGTTGGGTCACCACCAGCTGGTGGCCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: AGLAQLMSPHKAKPP*WGSGVGSPPAGGLG Trigger: TCCCAGGCCACCAGCTGGTGGTGACCCAACGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTGTGCAAGCCCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS GCA 90 bp | AGGCCCAGGCTGGTGTTGCGCAGACAAGGCCTCTTCTGCTGTCTCTaGTGCCCTCTGATCCACAGGCTCCTCTGTGCGTGTGTTCTCATC | + |
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Preference number: 5 (lower is better) Translates to: RPRLVLRRQGLFCCL*CPLIHRLLCACVLI Trigger: GATGAGAACACACGCACAGAGGAGCCTGTGGATCAGAGGGCAGCAGAGACAGCAGAAGAGGCCTTGTCTGCGCAACACCAGCCTGGGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CCA 90 bp | GGGCTTGCACAGCTGATGTCACCTCATAAAGCAAAGCCTCCATGGTaGGGTAGCGGCGTTGGGTCACCACCAGCTGGTGGCCTGGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: GLAQLMSPHKAKPPW*GSGVGSPPAGGLGR Trigger: TCTTCCCAGGCCACCAGCTGGTGGTGACCCAACGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTGTGCAAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 90 bp | GGATGGCCCAGTTTCCCCTGGCTCCTTTGGAAAAGGCTGGGCTGCTaGGGCCTTGTAGCCCTGGACCCTCTTCCTGTGGGCTTTGTACTT | + |
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Preference number: 5 (lower is better) Translates to: GWPSFPWLLWKRLGC*GLVALDPLPVGFVL Trigger: AAGTACAAAGCCCACAGGAAGAGGGTCCAGGGCTACAAGGCCTCAGCAGCCCAGCCTTTTCCAAAGGAGCCAGGGGAAACTGGGCCATCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CCA 90 bp | GCAGGGGGCGTCTGCTGGCAACCACTGTCCAAAGACCCCATCACATaGGCGCTGAGACACAGGAGGCTCATGTTGTTGCCTAGTCTTTCC | + |
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Preference number: 5 (lower is better) Translates to: AGGVCWQPLSKDPIT*ALRHRRLMLLPSLS Trigger: GGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGGGTCTTTGGACAGTGGTTGCCAGCAGACGCCCCCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CCA 90 bp | AGCCACGTAGTAATGGCCGTTCACCAGAGCAGTCCCTGTGGACAGTaGAAGCCCCTCGAGGGTGCAGAGTTTGTGTACAGCCCCACTCTG | + |
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Preference number: 5 (lower is better) Translates to: SHVVMAVHQSSPCGQ*KPLEGAEFVYSPTL Trigger: CAGAGTGGGGCTGTACACAAACTCTGCACCCTCGAGGGGCTTCCACTGTCCACAGGGACTGCTCTGGTGAACGGCCATTACTACGTGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 90 bp | GCGTCTGCTGGCAACCACTGTCCAAAGACCCCATCACATGGGCGCTaGGACACAGGAGGCTCATGTTGTTGCCTAGTCTTTCCACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: ASAGNHCPKTPSHGR*DTGGSCCCLVFPPG Trigger: CCCAGGTGGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGGGTCTTTGGACAGTGGTTGCCAGCAGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS TCA 90 bp | TCCACAGGCTCCTCTGTGCGTGTGTTCTCATCCTCATTCACTTCCTaGGCCCCAGCCGTCTCCTTCCTCGGGTATGGAGCCCCATACACT | + |
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Preference number: 5 (lower is better) Translates to: STGSSVRVFSSSFTS*APAVSFLGYGAPYT Trigger: AGTGTATGGGGCTCCATACCCGAGGAAGGAGACGGCTGGGGCTCAGGAAGTGAATGAGGATGAGAACACACGCACAGAGGAGCCTGTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 90 bp | ACTAAGTGTGTAGAGGACACGTACAGCCAGCGGGGCTTGCACAGCTaGTGTCACCTCATAAAGCAAAGCCTCCATGGTGGGGTAGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: TKCVEDTYSQRGLHS*CHLIKQSLHGGVAA Trigger: CGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTGTGCAAGCCCCGCTGGCTGTACGTGTCCTCTACACACTTAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 90 bp | ACAGAGAGGGGCTGGGCACCAGCAGCTCCATATAGGGCAGGGCCTTaGATTCTTCTTCTCCAACAGCCACGTAGTAATGGCCGTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: TERGWAPAAPYRAGP*ILLLQQPRSNGRSP Trigger: TGGTGAACGGCCATTACTACGTGGCTGTTGGAGAAGAAGAATTCAAGGCCCTGCCCTATATGGAGCTGCTGGTGCCCAGCCCCTCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CCA 72 bp | TGGGCGGAGGTTGGGGCTACAGCTTCAGGCCCAGGCTaGTGTTGCGCAGACAAGGCCTCTTCTGCTGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: WAEVGATASGPG*CCADKASSAVS Trigger: AGAGACAGCAGAAGAGGCCTTGTCTGCGCAACACCAGCCTGGGCCTGAAGCTGTAGCCCCAACCTCCGCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS TCA 72 bp | AGTTTCCCCTGGCTCCTTTGGAAAAGGCTGGGCTGCTaGGGCCTTGTAGCCCTGGACCCTCTTCCTGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SFPWLLWKRLGC*GLVALDPLPVG Trigger: GCCCACAGGAAGAGGGTCCAGGGCTACAAGGCCTCAGCAGCCCAGCCTTTTCCAAAGGAGCCAGGGGAAACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CAA 72 bp | CTCATAAAGCAAAGCCTCCATGGTGGGGTAGCGGCGTaGGGTCACCACCAGCTGGTGGCCTGGGAAGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LIKQSLHGGVAA*GHHQLVAWEEG Trigger: GCCTTCTTCCCAGGCCACCAGCTGGTGGTGACCCAACGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CCA 72 bp | CAGCTGATGTCACCTCATAAAGCAAAGCCTCCATGGTaGGGTAGCGGCGTTGGGTCACCACCAGCTGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: QLMSPHKAKPPW*GSGVGSPPAGG Trigger: GCCACCAGCTGGTGGTGACCCAACGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 72 bp | TCCTCTGTGCGTGTGTTCTCATCCTCATTCACTTCCTaGGCCCCAGCCGTCTCCTTCCTCGGGTATGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSVRVFSSSFTS*APAVSFLGYGA Trigger: GGCTCCATACCCGAGGAAGGAGACGGCTGGGGCTCAGGAAGTGAATGAGGATGAGAACACACGCACAGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS GCA 72 bp | CCCGTTCCTGAACACATGGATGTAGCAGGGGGCGTCTaGTGGCAACCACTGTCCAAAGACCCCATCACATGG | + |
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Preference number: 6 (lower is better) Translates to: PVPEHMDVAGGV*WQPLSKDPITW Trigger: CCATGTGATGGGGTCTTTGGACAGTGGTTGCCAGCAGACGCCCCCTGCTACATCCATGTGTTCAGGAACGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CCA 72 bp | GCACAGCTGATGTCACCTCATAAAGCAAAGCCTCCATaGTGGGGTAGCGGCGTTGGGTCACCACCAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: AQLMSPHKAKPP*WGSGVGSPPAG Trigger: ACCAGCTGGTGGTGACCCAACGCCGCTACCCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CCA 72 bp | GTTCCTGAACACATGGATGTAGCAGGGGGCGTCTGCTaGCAACCACTGTCCAAAGACCCCATCACATGGGCG | + |
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Preference number: 6 (lower is better) Translates to: VPEHMDVAGGVC*QPLSKDPITWA Trigger: CGCCCATGTGATGGGGTCTTTGGACAGTGGTTGCCAGCAGACGCCCCCTGCTACATCCATGTGTTCAGGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CCA 72 bp | GTAATGGCCGTTCACCAGAGCAGTCCCTGTGGACAGTaGAAGCCCCTCGAGGGTGCAGAGTTTGTGTACAGC | + |
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Preference number: 6 (lower is better) Translates to: VMAVHQSSPCGQ*KPLEGAEFVYS Trigger: GCTGTACACAAACTCTGCACCCTCGAGGGGCTTCCACTGTCCACAGGGACTGCTCTGGTGAACGGCCATTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 72 bp | GTAGAGGACACGTACAGCCAGCGGGGCTTGCACAGCTaGTGTCACCTCATAAAGCAAAGCCTCCATGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: VEDTYSQRGLHS*CHLIKQSLHGG Trigger: CCCACCATGGAGGCTTTGCTTTATGAGGTGACATCAGCTGTGCAAGCCCCGCTGGCTGTACGTGTCCTCTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CCA 72 bp | GTCTGCTGGCAACCACTGTCCAAAGACCCCATCACATaGGCGCTGAGACACAGGAGGCTCATGTTGTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VCWQPLSKDPIT*ALRHRRLMLLP Trigger: AGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGGGTCTTTGGACAGTGGTTGCCAGCAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CAA 72 bp | CATAGAAAGTGGATGGCCCAGTTTCCCCTGGCTCCTTaGGAAAAGGCTGGGCTGCTGAGGCCTTGTAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: HRKWMAQFPLAP*EKAGLLRPCSP Trigger: AGGGCTACAAGGCCTCAGCAGCCCAGCCTTTTCCAAAGGAGCCAGGGGAAACTGGGCCATCCACTTTCTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS TCA 72 bp | GGCTGGGCACCAGCAGCTCCATATAGGGCAGGGCCTTaGATTCTTCTTCTCCAACAGCCACGTAGTAATGGC | + |
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Preference number: 6 (lower is better) Translates to: GWAPAAPYRAGP*ILLLQQPRSNG Trigger: GCCATTACTACGTGGCTGTTGGAGAAGAAGAATTCAAGGCCCTGCCCTATATGGAGCTGCTGGTGCCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS GCA 72 bp | ACAGTGCTTTGGCTGGCTGATCCACAGGCTCCTCTGTaGGTGTGTTCTCATCCTCATTCACTTCCTGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: TVLWLADPQAPL*VCSHPHSLPEP Trigger: GGGCTCAGGAAGTGAATGAGGATGAGAACACACGCACAGAGGAGCCTGTGGATCAGCCAGCCAAAGCACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179209.8 |
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| CDS CCA 72 bp | TTCTCACTGAGCAGCTTCAACACCGTGTCCCAGTCCTaGATGGCAGTCTGGGACAGCTTTAGACTAAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: FSLSSFNTVSQS*MAVWDSFRLKG Trigger: CCCCTTTAGTCTAAAGCTGTCCCAGACTGCCATCCAGGACTGGGACACGGTGTTGAAGCTGCTCAGTGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106037.3 ENSMUST00000179209.8 |
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| CDS CAA 72 bp | CCCATCACATGGGCGCTGAGACACAGGAGGCTCATGTaGTTGCCTAGTCTTTCCACCTGGGTGTTTCATTCC | + |
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Preference number: 6 (lower is better) Translates to: PITWALRHRRLM*LPSLSTWVFHS Trigger: GGAATGAAACACCCAGGTGGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CAA 90 bp | TCCAAAGACCCCATCACATGGGCGCTGAGACACAGGAGGCTCATGTaGTTGCCTAGTCTTTCCACCTGGGTGTTTCATTCCAGGAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: SKDPITWALRHRRLM*LPSLSTWVFHSRRQ Trigger: TTGCCTCCTGGAATGAAACACCCAGGTGGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGGGTCTTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CAA 72 bp | ATCACATGGGCGCTGAGACACAGGAGGCTCATGTTGTaGCCTAGTCTTTCCACCTGGGTGTTTCATTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ITWALRHRRLML*PSLSTWVFHSR Trigger: CCTGGAATGAAACACCCAGGTGGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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| CDS CAA 90 bp | AAAGACCCCATCACATGGGCGCTGAGACACAGGAGGCTCATGTTGTaGCCTAGTCTTTCCACCTGGGTGTTTCATTCCAGGAGGCAAATA | + |
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Preference number: 6 (lower is better) Translates to: KDPITWALRHRRLML*PSLSTWVFHSRRQI Trigger: TATTTGCCTCCTGGAATGAAACACCCAGGTGGAAAGACTAGGCAACAACATGAGCCTCCTGTGTCTCAGCGCCCATGTGATGGGGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106037.3 |
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