RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DBX2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045608

Ensembl transcript IDs: ENSMUST00000054244.7

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGCCCTTCCTTCCACTCAGGCATTTATTGTGTTTAGAAGACTCTaGCCTAGGAAACCCAGCCAGACAAGAGACCAGAAGACGATCAAC +
Preference number: 1 (lower is better)
Translates to: QALPSTQAFIVFRRL*PRKPSQTRDQKTIN
Trigger: GTTGATCGTCTTCTGGTCTCTTGTCTGGCTGGGTTTCCTAGGCCAGAGTCTTCTAAACACAATAAATGCCTGAGTGGAAGGAAGGGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR TCA 90 bp ACCACAGCTAACTCGACTAGGGTTGCTAAGCTTGCTAAAACTCATTaGCAGTGGACACCAAAGAGGCCAGAAGCAGAGAATTTATACCGG +
Preference number: 1 (lower is better)
Translates to: TTANSTRVAKLAKTH*QWTPKRPEAENLYR
Trigger: CCGGTATAAATTCTCTGCTTCTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAAGCTTAGCAACCCTAGTCGAGTTAGCTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR TCA 90 bp ACAGACACACGAATATGTACACATATTCAGAACAGGCTCTGGGGCTaGTCCTGGCTCTTCTTTCAGTCTTATCACACTTTGTGGAAGGTT +
Preference number: 1 (lower is better)
Translates to: TDTRICTHIQNRLWG*SWLFFQSYHTLWKV
Trigger: AACCTTCCACAAAGTGTGATAAGACTGAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTTCTGAATATGTGTACATATTCGTGTGTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR-3UTR TCA 90 bp GAAATTCAGATGGTATGTAGTGTGCAATCAGCATTGACCACAGAGCCCTTCAGCAACAGGCTCTGGGGCTaGTCCTGGCTCTTCTTTCAG +
Preference number: 2 (lower is better)
Translates to: EIQMVCSVQSALTTEPFSNRLWG*SWLFFQ
Trigger: CTGAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTT...GCTGAAGGGCTCTGTGGTCAATGCTGATTGCACACTACATACCATCTGAATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR CAA 90 bp ATCAAACAGTTGCCTGACAAGCCCTTCCTTCCACTCAGGCATTTATaGTGTTTAGAAGACTCTGGCCTAGGAAACCCAGCCAGACAAGAG +
Preference number: 2 (lower is better)
Translates to: IKQLPDKPFLPLRHL*CLEDSGLGNPARQE
Trigger: CTCTTGTCTGGCTGGGTTTCCTAGGCCAGAGTCTTCTAAACACAATAAATGCCTGAGTGGAAGGAAGGGCTTGTCAGGCAACTGTTTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR-3UTR CCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCGTGTTTAGAAGACTCTaGCCTAGGAAACCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFIVFRRL*PRKPSQ
Trigger: CTGGCTGGGTTTCCTAGGCCAGAGTCTTCTAAACAC...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR-3UTR GCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCACAGCTCAGGCATCATaGCAAGGTATTAGTTTAAGG +
Preference number: 2 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFITAQAS*QGISLR
Trigger: CCTTAAACTAATACCTTGGCATGATGCCTGAGCTGT...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR-3UTR CAA 90 bp AGTGTGCAATCAGCATTGACCACAGAGCCCTTCAGCCCTGGGATTTTTAGCCCTAGTAGTAGTTTCCTGTaGAGTTCCTCTTGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: SVQSALTTEPFSPGIFSPSSSFL*SSSCLS
Trigger: AGAGAGACAAGAGGAACTCAACAGGAAACTACTACT...AGGGCTAAAAATCCCAGGGCTGAAGGGCTCTGTGGTCAATGCTGATTGCACACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR-3UTR CAA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCCCTGTTGAGTTCCTCTaGTCTCTCTTCAGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFIPVEFL*SLFSVC
Trigger: ACACACACTGAAGAGAGACAAGAGGAACTCAACAGG...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp CTAGGGTTGCTAAGCTTGCTAAAACTCATTGACAGTGGACACCAAAGAGGCCAGGGCAGTGGCCGCAGCTaGGGACACTCAGGACCGGGC +
Preference number: 4 (lower is better)
Translates to: LGLLSLLKLIDSGHQRGQGSGRS*GHSGPG
Trigger: GCCCGGTCCTGAGTGTCCGCAGCTGCGGCCACTGCC...CTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAAGCTTAGCAACCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTATCGGGGCTGAGGGGTaGGTCCTTGGCCCTCAGCGG +
Preference number: 4 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVIGAEG*VLGPQR
Trigger: CCGCTGAGGGCCAAGGACTCACCCCTCAGCCCCGAT...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCGGAAGGCACTGGGGCTaGGGGCTGGAAGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFIGRHWG*GLEGTV
Trigger: GACAGTGCCTTCCAGCCCTCAGCCCCAGTGCCTTCC...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCGCCGTGGAGAGCGAGTaGGAAGGGACAGGGACAGGG +
Preference number: 4 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFIAVESE*EGTGTG
Trigger: CCCTGTCCCTGTCCCTTCGCACTCGCTCTCCACGGC...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp GAATATGTACACATATTCAGAACAGGCTCTGGGGCTGATCCTGGCTCTTCTTTCACTGGGGCTGAGGGCTaGAAGGCACTGTCCCGCTCC +
Preference number: 4 (lower is better)
Translates to: EYVHIFRTGSGADPGSSFTGAEG*KALSRS
Trigger: GGAGCGGGACAGTGCCTTCCAGCCCTCAGCCCCAGT...GAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTTCTGAATATGTGTACATATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp CGATCAAACAGTTGCCTGACAAGCCCTTCCTTCCACTCAGGCATTTATTGTGTTAAAAGCTGTGGGGGATaGTGGGCGCCTGCAGGACCC +
Preference number: 4 (lower is better)
Translates to: RSNSCLTSPSFHSGIYCVKSCGG*WAPAGP
Trigger: GGGTCCTGCAGGCGCCCAGCATCCCCCACAGCTTTT...AACACAATAAATGCCTGAGTGGAAGGAAGGGCTTGTCAGGCAACTGTTTGATCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTAAGGCCGAAGAGTGCTaGGGACGCCACCACATCCCA +
Preference number: 4 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVKAEEC*GRHHIP
Trigger: TGGGATGTGGTGGCGTCCTCAGCACTCTTCGGCCTT...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTCCTCCAGCTTGGACTTaGGTGTGGCTGGGAGACTTC +
Preference number: 4 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVPPAWT*VWLGDF
Trigger: GAAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGG...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTAACTCTTGCCCAGACTaGCAAAGCCGGGCGCAGGAA +
Preference number: 4 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVNSCPD*QSRAQE
Trigger: TTCCTGCGCCCGGCTTTGGCAGTCTGGGCAAGAGTT...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp GAAATTCAGATGGTATGTAGTGTGCAATCAGCATTGACCACAGAGCCCTTCAGCGCCAGCCTGTCTTCCTaGAGGCTCACTTCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: EIQMVCSVQSALTTEPFSASLSS*RLTSWR
Trigger: TCTCCAAGAAGTGAGCCTTCAGGAAGACAGGCTGGC...GCTGAAGGGCTCTGTGGTCAATGCTGATTGCACACTACATACCATCTGAATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTTGCTTCCAGGACCCCTaGATTCTCCTGGGTCAGTCT +
Preference number: 4 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVCFQDP*ILLGQS
Trigger: AGACTGACCCAGGAGAATTCAGGGGTCCTGGAAGCA...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TCTGGGGCTGATCCTGGCTCTTCTTTCAGTCTTATCACACTTTGTGGAAGGTTCTTTTCAGGACTGGGATaGAAGGTGTGTCCGGCCCAT +
Preference number: 4 (lower is better)
Translates to: SGADPGSSFSLITLCGRFFSGLG*KVCPAH
Trigger: ATGGGCCGGACACACCTTCCATCCCAGTCCTGAAAA...GAACCTTCCACAAAGTGTGATAAGACTGAAAGAAGAGCCAGGATCAGCCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp TCTGGGGCTGATCCTGGCTCTTCTTTCAGTCTTATCACACTTTGTGGAAGGTTCCTGGGTCAGTCTTTCTaGAGATTCTGGAGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: SGADPGSSFSLITLCGRFLGQSF*RFWSLL
Trigger: GAGGAGACTCCAGAATCTGCAGAAAGACTGACCCAG...GAACCTTCCACAAAGTGTGATAAGACTGAAAGAAGAGCCAGGATCAGCCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TTTCAGTCTTATCACACTTTGTGGAAGGTTCTATTCCATATATACATTGAGCCTTGGGCTGGCAGGCAGTaGCCGCAGCTGCGGACACTC +
Preference number: 4 (lower is better)
Translates to: FQSYHTLWKVLFHIYIEPWAGRQ*PQLRTL
Trigger: GAGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCA...AGGCTCAATGTATATATGGAATAGAACCTTCCACAAAGTGTGATAAGACTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TTTCAGTCTTATCACACTTTGTGGAAGGTTCTATTCCATATATACATTGAGCCTAGCTGTGGGGGATGCTaGGCGCCTGCAGGACCCACC +
Preference number: 4 (lower is better)
Translates to: FQSYHTLWKVLFHIYIEPSCGGC*APAGPT
Trigger: GGTGGGTCCTGCAGGCGCCCAGCATCCCCCACAGCT...AGGCTCAATGTATATATGGAATAGAACCTTCCACAAAGTGTGATAAGACTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCTTGGAATTTGAGTCCTaGGTCAGCAAAGGCAGCCCG +
Preference number: 4 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFILEFES*VSKGSP
Trigger: CGGGCTGCCTTTGCTGACCCAGGACTCAAATTCCAA...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR TCA 90 bp TTTAGCCCTGTTGTAGACTGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCCCAAATCTTCACCTGTaGCTCCTTCAGTCCCAAGCT +
Preference number: 4 (lower is better)
Translates to: FSPVVDCLRTVTLGLDFIPNLHL*LLQSQA
Trigger: AGCTTGGGACTGAAGGAGTCACAGGTGAAGATTTGG...GATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp GAATATGTACACATATTCAGAACAGGCTCTGGGGCTGATCCTGGCTCTTCTTTCGGACTTGAGTGTGGCTaGGAGACTTCCCATATTGAC +
Preference number: 4 (lower is better)
Translates to: EYVHIFRTGSGADPGSSFGLECG*ETSHID
Trigger: GTCAATATGGGAAGTCTCCCAGCCACACTCAAGTCC...GAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTTCTGAATATGTGTACATATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp GAATATGTACACATATTCAGAACAGGCTCTGGGGCTGATCCTGGCTCTTCTTTCTCTTTCTGCAGATTCTaGAGTCTCCTCCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: EYVHIFRTGSGADPGSSFSFCRF*SLLPPA
Trigger: AGCTGGAGGGAGGAGACTCCAGAATCTGCAGAAAGA...GAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTTCTGAATATGTGTACATATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp TTGCTAAAACTCATTGACAGTGGACACCAAAGAGGCCAGAAGCAGAGAATTTATCGATCAGGAAACTCTTaGCCAGACTGCCAAAGCCGG +
Preference number: 4 (lower is better)
Translates to: LLKLIDSGHQRGQKQRIYRSGNS*PDCQSR
Trigger: CCGGCTTTGGCAGTCTGGGCAAGAGTTTCCTGATCG...ATAAATTCTCTGCTTCTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp TTTCAGTCTTATCACACTTTGTGGAAGGTTCTATTCCATATATACATTGAGCCTGGACCCACCGCAGCATaGAGAGTAGAATGGCGGGGC +
Preference number: 4 (lower is better)
Translates to: FQSYHTLWKVLFHIYIEPGPTAA*RVEWRG
Trigger: GCCCCGCCATTCTACTCTGCATGCTGCGGTGGGTCC...AGGCTCAATGTATATATGGAATAGAACCTTCCACAAAGTGTGATAAGACTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp CGATCAAACAGTTGCCTGACAAGCCCTTCCTTCCACTCAGGCATTTATTGTGTTACCCCTGAATTCTCCTaGGTCAGTCTTTCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: RSNSCLTSPSFHSGIYCVTPEFS*VSLSAD
Trigger: ATCTGCAGAAAGACTGACCCAGGAGAATTCAGGGGT...AACACAATAAATGCCTGAGTGGAAGGAAGGGCTTGTCAGGCAACTGTTTGATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR CAA 72 bp TTCAGCCCTGGGATTTTTAGCCCTGTTGTAGACTGTTaGAGAACAGTGACCCTGGGTCTTGACTTCATCTTG +
Preference number: 4 (lower is better)
Translates to: FSPGIFSPVVDC*RTVTLGLDFIL
Trigger: CAAGATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACAGTCTACAACAGGGCTAAAAATCCCAGGGCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TTGCTAAAACTCATTGACAGTGGACACCAAAGAGGCCAGAAGCAGAGAATTTATTCAGAAGAAAGGGTTTaGAAGGCACTGGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: LLKLIDSGHQRGQKQRIYSEERV*KALGLR
Trigger: CCTCAGCCCCAGTGCCTTCCAAACCCTTTCTTCTGA...ATAAATTCTCTGCTTCTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
3UTR CAA 72 bp TGTTTGAGAACAGTGACCCTGGGTCTTGACTTCATCTaGGTCGCTGATTATAAACTCGTTGGTGCAGACGAT +
Preference number: 4 (lower is better)
Translates to: CLRTVTLGLDFI*VADYKLVGADD
Trigger: ATCGTCTGCACCAACGAGTTTATAATCAGCGACCAAGATGAAGTCAAGACCCAGGGTCACTGTTCTCAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR GCA 90 bp CGATCAAACAGTTGCCTGACAAGCCCTTCCTTCCACTCAGGCATTTATTGTGTTTTCGTAAAATCCCCCTaGGAGCTTTGGAATTTGAGT +
Preference number: 4 (lower is better)
Translates to: RSNSCLTSPSFHSGIYCVFVKSP*ELWNLS
Trigger: ACTCAAATTCCAAAGCTCGCAGGGGGATTTTACGAA...AACACAATAAATGCCTGAGTGGAAGGAAGGGCTTGTCAGGCAACTGTTTGATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CCA 90 bp TTTCAGTCTTATCACACTTTGTGGAAGGTTCTATTCCATATATACATTGAGCCTCAGGGTTTTCAGGACTaGGATGGAAGGTGTGTCCGG +
Preference number: 4 (lower is better)
Translates to: FQSYHTLWKVLFHIYIEPQGFQD*DGRCVR
Trigger: CCGGACACACCTTCCATCCCAGTCCTGAAAACCCTG...AGGCTCAATGTATATATGGAATAGAACCTTCCACAAAGTGTGATAAGACTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 90 bp CCGGCCTGGGCGGCCACAGCGCTGGGCAGCATGGTGCGCGCCCGCTaGCCGGGGAGCCGTGGAGAGCGAGTGCGAAGGGACAGGGACAGG +
Preference number: 5 (lower is better)
Translates to: PAWAATALGSMVRAR*PGSRGERVRRDRDR
Trigger: CCTGTCCCTGTCCCTTCGCACTCGCTCTCCACGGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCCAGCGCTGTGGCCGCCCAGGCCGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 90 bp CCCAGTAGGCTCCGGCCTGGGCGGCCACAGCGCTGGGCAGCATGGTaGGCGCCCGCTGCCCGGGGAGCCGTGGAGAGCGAGTGCGAAGGG +
Preference number: 5 (lower is better)
Translates to: PSRLRPGRPQRWAAW*APAARGAVESECEG
Trigger: CCCTTCGCACTCGCTCTCCACGGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCCAGCGCTGTGGCCGCCCAGGCCGGAGCCTACTGGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp GGGTCCGGCCGGGCACAGCTTGAGCGGCACTGGGCTGGCAGGCAGTaGCCGCAGCTGCGGACACTCAGGACCGGGCGCTGGGCGTGGGGG +
Preference number: 5 (lower is better)
Translates to: GSGRAQLERHWAGRQ*PQLRTLRTGRWAWG
Trigger: CCCCCACGCCCAGCGCCCGGTCCTGAGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCAGTGCCGCTCAAGCTGTGCCCGGCCGGACCC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp CATCCCAGTAGGCTCCGGCCTGGGCGGCCACAGCGCTGGGCAGCATaGTGCGCGCCCGCTGCCCGGGGAGCCGTGGAGAGCGAGTGCGAA +
Preference number: 5 (lower is better)
Translates to: HPSRLRPGRPQRWAA*CAPAARGAVESECE
Trigger: TTCGCACTCGCTCTCCACGGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCCAGCGCTGTGGCCGCCCAGGCCGGAGCCTACTGGGATG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp CCAGCGCACACCAAAGGGTCCGGCCGGGCACAGCTTGAGCGGCACTaGGCTGGCAGGCAGTGGCCGCAGCTGCGGACACTCAGGACCGGG +
Preference number: 5 (lower is better)
Translates to: PAHTKGSGRAQLERH*AGRQWPQLRTLRTG
Trigger: CCCGGTCCTGAGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCAGTGCCGCTCAAGCTGTGCCCGGCCGGACCCTTTGGTGTGCGCTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS TCA 90 bp GCGAAGGGACAGGGACAGGGCGCGGACAGGATCGGGGCTGAGGGGTaGGTCCTTGGCCCTCAGCGGCTCCTCTGGCAGCGTCCGGGAACG +
Preference number: 5 (lower is better)
Translates to: AKGQGQGADRIGAEG*VLGPQRLLWQRPGT
Trigger: CGTTCCCGGACGCTGCCAGAGGAGCCGCTGAGGGCCAAGGACTCACCCCTCAGCCCCGATCCTGTCCGCGCCCTGTCCCTGTCCCTTCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS TCA 90 bp TCTGGAAGGCCCAGCGCACACCAAAGGGTCCGGCCGGGCACAGCTTaGGCGGCACTGGGCTGGCAGGCAGTGGCCGCAGCTGCGGACACT +
Preference number: 5 (lower is better)
Translates to: SGRPSAHQRVRPGTA*AALGWQAVAAAADT
Trigger: AGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCAGTGCCGCTCAAGCTGTGCCCGGCCGGACCCTTTGGTGTGCGCTGGGCCTTCCAGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 90 bp TGGGCCCGGCCCCTGCGCGCAGCAAGTTCTCGATCAGGAAACTCTTaGCCAGACTGCCAAAGCCGGGCGCAGGAAGGCCGAAGAGTGCTG +
Preference number: 5 (lower is better)
Translates to: WARPLRAASSRSGNS*PDCQSRAQEGRRVL
Trigger: CAGCACTCTTCGGCCTTCCTGCGCCCGGCTTTGGCAGTCTGGGCAAGAGTTTCCTGATCGAGAACTTGCTGCGCGCAGGGGCCGGGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp AGTGTGCAATCAGCATTGACCACAGAGCCCTTCAGCCCTGGGATTTTTAGCCCTCCGGCCGGGCACAGCTaGAGCGGCACTGGGCTGGCA +
Preference number: 5 (lower is better)
Translates to: SVQSALTTEPFSPGIFSPPAGHS*SGTGLA
Trigger: TGCCAGCCCAGTGCCGCTCAAGCTGTGCCCGGCCGG...AGGGCTAAAAATCCCAGGGCTGAAGGGCTCTGTGGTCAATGCTGATTGCACACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp GCAGATTCTGGAGTCTCCTCCCTCCAGCTTGGACTTGAGTGTGGCTaGGAGACTTCCCATATTGACGGGCACTGCGGAGGACAGCCCACG +
Preference number: 5 (lower is better)
Translates to: ADSGVSSLQLGLECG*ETSHIDGHCGGQPT
Trigger: CGTGGGCTGTCCTCCGCAGTGCCCGTCAATATGGGAAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGGGAGGAGACTCCAGAATCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp AAGGTACCTCGGAGTGAATCTGCTTCCAGGACCCCTGAATTCTCCTaGGTCAGTCTTTCTGCAGATTCTGGAGTCTCCTCCCTCCAGCTT +
Preference number: 5 (lower is better)
Translates to: KVPRSESASRTPEFS*VSLSADSGVSSLQL
Trigger: AAGCTGGAGGGAGGAGACTCCAGAATCTGCAGAAAGACTGACCCAGGAGAATTCAGGGGTCCTGGAAGCAGATTCACTCCGAGGTACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp GAAATTCAGATGGTATGTAGTGTGCAATCAGCATTGACCACAGAGCCCTTCAGCGGGAGACTTCCCATATaGACGGGCACTGCGGAGGAC +
Preference number: 5 (lower is better)
Translates to: EIQMVCSVQSALTTEPFSGRLPI*TGTAED
Trigger: GTCCTCCGCAGTGCCCGTCAATATGGGAAGTCTCCC...GCTGAAGGGCTCTGTGGTCAATGCTGATTGCACACTACATACCATCTGAATTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TTGCTAAAACTCATTGACAGTGGACACCAAAGAGGCCAGAAGCAGAGAATTTATCTGAGGGGTGAGTCCTaGGCCCTCAGCGGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LLKLIDSGHQRGQKQRIYLRGES*ALSGSS
Trigger: AGAGGAGCCGCTGAGGGCCAAGGACTCACCCCTCAG...ATAAATTCTCTGCTTCTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTCCCTCCAGCTTGGACTaGAGTGTGGCTGGGAGACTT +
Preference number: 5 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVPSSLD*SVAGRL
Trigger: AAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGGG...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTCTCAGAAGAAAGGGTTaGGAAGGCACTGGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVLRRKG*EGTGAE
Trigger: CTCAGCCCCAGTGCCTTCCAAACCCTTTCTTCTGAG...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TCTGGGGCTGATCCTGGCTCTTCTTTCAGTCTTATCACACTTTGTGGAAGGTTCGCCCGTGTTCTTCTCTaGAAAAAGCTGTGGGGGATG +
Preference number: 5 (lower is better)
Translates to: SGADPGSSFSLITLCGRFARVLL*KKLWGM
Trigger: CATCCCCCACAGCTTTTTCAAGAGAAGAACACGGGC...GAACCTTCCACAAAGTGTGATAAGACTGAAAGAAGAGCCAGGATCAGCCCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TCTGGGGCTGATCCTGGCTCTTCTTTCAGTCTTATCACACTTTGTGGAAGGTTCCTCTGGAGTCCATGCTaGTCTCTAGGTCCCTTCTCA +
Preference number: 5 (lower is better)
Translates to: SGADPGSSFSLITLCGRFLWSPC*SLGPFS
Trigger: TGAGAAGGGACCTAGAGACAAGCATGGACTCCAGAG...GAACCTTCCACAAAGTGTGATAAGACTGAAAGAAGAGCCAGGATCAGCCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 90 bp GTGCCAGCCTGTCTTCCTGAAGGCTCACTTCTTGGAGACACCTACTaGAGAGTACTTCCTTTTCTTTGGAATTCCGCCATTTCATCCTTC +
Preference number: 5 (lower is better)
Translates to: VPACLPEGSLLGDTY*RVLPFLWNSAISSF
Trigger: GAAGGATGAAATGGCGGAATTCCAAAGAAAAGGAAGTACTCTCCAGTAGGTGTCTCCAAGAAGTGAGCCTTCAGGAAGACAGGCTGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TTCCTCTTGTCTCTCTTCAGTGTGTGTCTAACCACAGCTAACTCGACTAGGGTTCTGAAGGCTCACTTCTaGGAGACACCTACTGGAGAG +
Preference number: 5 (lower is better)
Translates to: FLLSLFSVCLTTANSTRVLKAHF*ETPTGE
Trigger: CTCTCCAGTAGGTGTCTCCAAGAAGTGAGCCTTCAG...AACCCTAGTCGAGTTAGCTGTGGTTAGACACACACTGAAGAGAGACAAGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp TTGCTAAAACTCATTGACAGTGGACACCAAAGAGGCCAGAAGCAGAGAATTTATTGCGAGCTTTGGAATTaGAGTCCTGGGTCAGCAAAG +
Preference number: 5 (lower is better)
Translates to: LLKLIDSGHQRGQKQRIYCELWN*SPGSAK
Trigger: CTTTGCTGACCCAGGACTCAAATTCCAAAGCTCGCA...ATAAATTCTCTGCTTCTGGCCTCTTTGGTGTCCACTGTCAATGAGTTTTAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS-3UTR CAA 90 bp GAATATGTACACATATTCAGAACAGGCTCTGGGGCTGATCCTGGCTCTTCTTTCTTCCTTCGGTCTGTTTaGCTGATGTATTTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: EYVHIFRTGSGADPGSSFFLRSV*LMYFCF
Trigger: GAAGCAGAAATACATCAGCAAAACAGACCGAAGGAA...GAAAGAAGAGCCAGGATCAGCCCCAGAGCCTGTTCTGAATATGTGTACATATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp AGGCTCCGGCCTGGGCGGCCACAGCGCTGGGCAGCATaGTGCGCGCCCGCTGCCCGGGGAGCCGTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: RLRPGRPQRWAA*CAPAARGAVES
Trigger: GCTCTCCACGGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCCAGCGCTGTGGCCGCCCAGGCCGGAGCCT
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp CATCCCAGTAGGCTCCGGCCTGGGCGGCCACAGCGCTaGGCAGCATGGTGCGCGCCCGCTGCCCGGGGAGCC +
Preference number: 6 (lower is better)
Translates to: HPSRLRPGRPQR*AAWCAPAARGA
Trigger: GGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCCAGCGCTGTGGCCGCCCAGGCCGGAGCCTACTGGGATG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp GGGCAGCATGGTGCGCGCCCGCTGCCCGGGGAGCCGTaGAGAGCGAGTGCGAAGGGACAGGGACAGGGCGCG +
Preference number: 6 (lower is better)
Translates to: GQHGARPLPGEP*RASAKGQGQGA
Trigger: CGCGCCCTGTCCCTGTCCCTTCGCACTCGCTCTCCACGGCTCCCCGGGCAGCGGGCGCGCACCATGCTGCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp CTGTCCCGCTCCCCCGGAGCCCGGCCAGGGGGCATCTaGAAGGCCCAGCGCACACCAAAGGGTCCGGCCGGG +
Preference number: 6 (lower is better)
Translates to: LSRSPGARPGGI*KAQRTPKGPAG
Trigger: CCCGGCCGGACCCTTTGGTGTGCGCTGGGCCTTCCAGATGCCCCCTGGCCGGGCTCCGGGGGAGCGGGACAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp CGGGCACAGCTTGAGCGGCACTGGGCTGGCAGGCAGTaGCCGCAGCTGCGGACACTCAGGACCGGGCGCTGG +
Preference number: 6 (lower is better)
Translates to: RAQLERHWAGRQ*PQLRTLRTGRW
Trigger: CCAGCGCCCGGTCCTGAGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCAGTGCCGCTCAAGCTGTGCCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS TCA 72 bp CAGGGACAGGGCGCGGACAGGATCGGGGCTGAGGGGTaGGTCCTTGGCCCTCAGCGGCTCCTCTGGCAGCGT +
Preference number: 6 (lower is better)
Translates to: QGQGADRIGAEG*VLGPQRLLWQR
Trigger: ACGCTGCCAGAGGAGCCGCTGAGGGCCAAGGACTCACCCCTCAGCCCCGATCCTGTCCGCGCCCTGTCCCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp ACCAAAGGGTCCGGCCGGGCACAGCTTGAGCGGCACTaGGCTGGCAGGCAGTGGCCGCAGCTGCGGACACTC +
Preference number: 6 (lower is better)
Translates to: TKGSGRAQLERH*AGRQWPQLRTL
Trigger: GAGTGTCCGCAGCTGCGGCCACTGCCTGCCAGCCCAGTGCCGCTCAAGCTGTGCCCGGCCGGACCCTTTGGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 72 bp AGGGCGCGGACAGGATCGGGGCTGAGGGGTGAGTCCTaGGCCCTCAGCGGCTCCTCTGGCAGCGTCCGGGAA +
Preference number: 6 (lower is better)
Translates to: RARTGSGLRGES*ALSGSSGSVRE
Trigger: TTCCCGGACGCTGCCAGAGGAGCCGCTGAGGGCCAAGGACTCACCCCTCAGCCCCGATCCTGTCCGCGCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 72 bp GAGTGTGGCTGGGAGACTTCCCATATTGACGGGCACTaGGGAGGACAGCCCACGGCAGGCCGTGCCAGCCTG +
Preference number: 6 (lower is better)
Translates to: ECGWETSHIDGH*GGQPTAGRASL
Trigger: CAGGCTGGCACGGCCTGCCGTGGGCTGTCCTCCGCAGTGCCCGTCAATATGGGAAGTCTCCCAGCCACACTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 90 bp GTGGGCCCGGCCCCTGCGCGCAGCAAGTTCTCGATCAGGAAACTCTaGCCCAGACTGCCAAAGCCGGGCGCAGGAAGGCCGAAGAGTGCT +
Preference number: 6 (lower is better)
Translates to: VGPAPARSKFSIRKL*PRLPKPGAGRPKSA
Trigger: AGCACTCTTCGGCCTTCCTGCGCCCGGCTTTGGCAGTCTGGGCAAGAGTTTCCTGATCGAGAACTTGCTGCGCGCAGGGGCCGGGCCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 72 bp CCTCAGCGGCTCCTCTGGCAGCGTCCGGGAACGGTCTaGAGATCCGGACAGGGTTTTCAGGACTGGGATGGA +
Preference number: 6 (lower is better)
Translates to: PQRLLWQRPGTV*RSGQGFQDWDG
Trigger: TCCATCCCAGTCCTGAAAACCCTGTCCGGATCTGCAGACCGTTCCCGGACGCTGCCAGAGGAGCCGCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 72 bp CCCCTGCGCGCAGCAAGTTCTCGATCAGGAAACTCTTaGCCAGACTGCCAAAGCCGGGCGCAGGAAGGCCGA +
Preference number: 6 (lower is better)
Translates to: PLRAASSRSGNS*PDCQSRAQEGR
Trigger: TCGGCCTTCCTGCGCCCGGCTTTGGCAGTCTGGGCAAGAGTTTCCTGATCGAGAACTTGCTGCGCGCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp GCAAAGGCAGCCCGTGTTCTTCTCTTGAAAAAGCTGTaGGGGATGCTGGGCGCCTGCAGGACCCACCGCAGC +
Preference number: 6 (lower is better)
Translates to: AKAARVLLLKKL*GMLGACRTHRS
Trigger: GCTGCGGTGGGTCCTGCAGGCGCCCAGCATCCCCCACAGCTTTTTCAAGAGAAGAACACGGGCTGCCTTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS TCA 72 bp GGACAGCCCACGGCAGGCCGTGCCAGCCTGTCTTCCTaGAGGCTCACTTCTTGGAGACACCTACTGGAGAGT +
Preference number: 6 (lower is better)
Translates to: GQPTAGRASLSS*RLTSWRHLLES
Trigger: ACTCTCCAGTAGGTGTCTCCAAGAAGTGAGCCTTCAGGAAGACAGGCTGGCACGGCCTGCCGTGGGCTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS TCA 72 bp GTCCTGGGTCAGCAAAGGCAGCCCGTGTTCTTCTCTTaGAAAAGCTGTGGGGGATGCTGGGCGCCTGCAGGA +
Preference number: 6 (lower is better)
Translates to: VLGQQRQPVFFS*KSCGGCWAPAG
Trigger: TCCTGCAGGCGCCCAGCATCCCCCACAGCTTTTTCAAGAGAAGAACACGGGCTGCCTTTGCTGACCCAGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 72 bp GCAGCAAGTTCTCGATCAGGAAACTCTTGCCCAGACTaGCAAAGCCGGGCGCAGGAAGGCCGAAGAGTGCTG +
Preference number: 6 (lower is better)
Translates to: AASSRSGNSCPD*QSRAQEGRRVL
Trigger: CAGCACTCTTCGGCCTTCCTGCGCCCGGCTTTGGCAGTCTGGGCAAGAGTTTCCTGATCGAGAACTTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS GCA 72 bp CTTCTCTTGAAAAAGCTGTGGGGGATGCTGGGCGCCTaGAGGACCCACCGCAGCATGCAGAGTAGAATGGCG +
Preference number: 6 (lower is better)
Translates to: LLLKKLWGMLGA*RTHRSMQSRMA
Trigger: CGCCATTCTACTCTGCATGCTGCGGTGGGTCCTGCAGGCGCCCAGCATCCCCCACAGCTTTTTCAAGAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CCA 72 bp GGAGTCTCCTCCCTCCAGCTTGGACTTGAGTGTGGCTaGGAGACTTCCCATATTGACGGGCACTGCGGAGGA +
Preference number: 6 (lower is better)
Translates to: GVSSLQLGLECG*ETSHIDGHCGG
Trigger: TCCTCCGCAGTGCCCGTCAATATGGGAAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGGGAGGAGACTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 72 bp CTGCAGATTCTGGAGTCTCCTCCCTCCAGCTTGGACTaGAGTGTGGCTGGGAGACTTCCCATATTGACGGGC +
Preference number: 6 (lower is better)
Translates to: LQILESPPSSLD*SVAGRLPILTG
Trigger: GCCCGTCAATATGGGAAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGGGAGGAGACTCCAGAATCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 90 bp GCCCACGGCAGGCCGTGCCAGCCTGTCTTCCTGAAGGCTCACTTCTaGGAGACACCTACTGGAGAGTACTTCCTTTTCTTTGGAATTCCG +
Preference number: 6 (lower is better)
Translates to: AHGRPCQPVFLKAHF*ETPTGEYFLFFGIP
Trigger: CGGAATTCCAAAGAAAAGGAAGTACTCTCCAGTAGGTGTCTCCAAGAAGTGAGCCTTCAGGAAGACAGGCTGGCACGGCCTGCCGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 90 bp TCAGTCTTTCTGCAGATTCTGGAGTCTCCTCCCTCCAGCTTGGACTaGAGTGTGGCTGGGAGACTTCCCATATTGACGGGCACTGCGGAG +
Preference number: 6 (lower is better)
Translates to: SVFLQILESPPSSLD*SVAGRLPILTGTAE
Trigger: CTCCGCAGTGCCCGTCAATATGGGAAGTCTCCCAGCCACACTCAAGTCCAAGCTGGAGGGAGGAGACTCCAGAATCTGCAGAAAGACTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7
CDS CAA 72 bp CAGCTCTTCGTAAAATCCCCCTGCGAGCTTTGGAATTaGAGTCCTGGGTCAGCAAAGGCAGCCCGTGTTCTT +
Preference number: 6 (lower is better)
Translates to: QLFVKSPCELWN*SPGSAKAARVL
Trigger: AAGAACACGGGCTGCCTTTGCTGACCCAGGACTCAAATTCCAAAGCTCGCAGGGGGATTTTACGAAGAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054244.7