Pregenerated sensors for DBT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000340Ensembl transcript IDs: ENSMUST00000000349.11, ENSMUST00000199614.2
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCTTACCCACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTaGGAAATACTGTGCTTTAAAGCCCTACCAAGGCAGCACAAACCA | + |
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Preference number: 1 (lower is better) Translates to: SLTHRSFPAESPMCQ*EILCFKALPRQHKP Trigger: TGGTTTGTGCTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGTGGGTAAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR TCA 90 bp | CCCATAATTTCCCATGTGGCTCTTCTTATTAATACGTGCTCCTACTaGGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCGTGT | + |
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Preference number: 1 (lower is better) Translates to: PIISHVALLINTCSY*GLGGQNRLQDLFSC Trigger: ACACGAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTATTAATAAGAAGAGCCACATGGGAAATTATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR TCA 90 bp | TTTCCCATGTGGCTCTTCTTATTAATACGTGCTCCTACTGAGGGCTGGGAGGACCTGACCTACACAATGTaGTACCCAGGGGAGCCTTAC | + |
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Preference number: 2 (lower is better) Translates to: FPMWLFLLIRAPTEGWEDLTYTM*YPGEPY Trigger: GTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAG...GTCCTCCCAGCCCTCAGTAGGAGCACGTATTAATAAGAAGAGCCACATGGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR GCA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCGTTCTGCATGTATACTaGTACTCGCCTTCAGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLVLHVY*YSPSVA Trigger: TGCCACTGAAGGCGAGTAGCAGTATACATGCAGAAC...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR TCA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCCTTGTTTCAACTCACTaGCACATAGATCTCAGCACC | + |
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Preference number: 2 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLLVSTH*HIDLST Trigger: GGTGCTGAGATCTATGTGTCAGTGAGTTGAAACAAG...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR GCA 90 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTGGAATAAAGGCTTTCTCGCTCGCTCACAGCTCTaGACATCCACCCATCTACAC | + |
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Preference number: 2 (lower is better) Translates to: TQRSTCLCFSSAWNKGFLARSQL*TSTHLH Trigger: GTGTAGATGGGTGGATGTGCAGAGCTGTGAGCGAGC...GAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR CCA 90 bp | ACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTGAGAAATACTGTGCTTTAGCCTCACACACTCTTTaGAAATGCGAAAAGTTCACA | + |
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Preference number: 2 (lower is better) Translates to: TAPFQQKAQCVSEKYCALASHTL*KCEKFT Trigger: TGTGAACTTTTCGCATTTCCAAAGAGTGTGTGAGGC...TAAAGCACAGTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR TCA 90 bp | TCTTTAAGTATTCTGCCATCTTTTCCTGAGCCAACAACTTCACTCAGCTTAATAGAGGCCTTGTCACTTTaGACTTCACAGATGCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: SLSILPSFPEPTTSLSLIEALSL*TSQMLS Trigger: TGACAGCATCTGTGAAGTTCAAAGTGACAAGGCCTC...TATTAAGCTGAGTGAAGTTGTTGGCTCAGGAAAAGATGGCAGAATACTTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199614.2 |
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| 3UTR TCA 72 bp | CACCATAATGGAAGCCCCGCTCTGACCTACACAATGTaGTACCCAGGGGAGCCTTACCCACCGCTCCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: HHNGSPALTYTM*YPGEPYPPLLS Trigger: GGAAAGGAGCGGTGGGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGGCTTCCATTATGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR TCA 72 bp | CACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTaGCCTACACAATGTGATACCCAGGGGAGCCTTACC | + |
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Preference number: 3 (lower is better) Translates to: HIDLSTIMEAPL*PTQCDTQGSLT Trigger: GGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR-3UTR CAA 90 bp | TCCATTGCCAGCCGACGCACTGCAGGCGTTGCTAGTGTTTTCTGGCCTTTTATCAGAGGCCTTGTCACTTaGAACTTCACAGATGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: SIASRRTAGVASVFWPFIRGLVT*NFTDAV Trigger: GACAGCATCTGTGAAGTTCAAAGTGACAAGGCCTCT...GATAAAAGGCCAGAAAACACTAGCAACGCCTGCAGTGCGTCGGCTGGCAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199614.2 |
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| 3UTR CCA 72 bp | CTCTGGCTGTCTGTGAACTCACTCTGTAGACCAGGCTaGCCTCGAACTCAGAGATCCACTTGTCTTTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: LWLSVNSLCRPG*PRTQRSTCLCF Trigger: GAAACAAAGACAAGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCACAGACAGCCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR TCA 72 bp | CACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTaGGAAATACTGTGCTTTAAAGCCCTACCAAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: HRSFPAESPMCQ*EILCFKALPRQ Trigger: CTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR CCA 72 bp | TGGCTCTTCTTATTAATACGTGCTCCTACTGAGGGCTaGGAGGACAGAACAGACTCCAAGACCTTTTCTCGT | + |
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Preference number: 3 (lower is better) Translates to: WLFLLIRAPTEG*EDRTDSKTFSR Trigger: ACGAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTATTAATAAGAAGAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR TCA 72 bp | ACAGAACAGACTCCAAGACCTTTTCTCGTGTCTCGCTaGAGGTCACTGAAATCAAAAGGCAACAAATCTCTA | + |
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Preference number: 3 (lower is better) Translates to: TEQTPRPFLVSR*RSLKSKGNKSL Trigger: TAGAGATTTGTTGCCTTTTGATTTCAGTGACCTTCAGCGAGACACGAGAAAAGGTCTTGGAGTCTGTTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR CCA 72 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTaGAATAAAGGCTTTCTCAGCCTTGAATTAGAATCC | + |
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Preference number: 3 (lower is better) Translates to: TQRSTCLCFSSA*NKGFLSLELES Trigger: GGATTCTAATTCAAGGCTGAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| 3UTR TCA 72 bp | AATAAAGGCTTTCTCAGCCTTGAATTAGAATCCCCCTaGAGCTATCTGATTAAAGTAGACCTTTTTCAAGAT | + |
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Preference number: 3 (lower is better) Translates to: NKGFLSLELESP*SYLIKVDLFQD Trigger: ATCTTGAAAAAGGTCTACTTTAATCAGATAGCTTCAGGGGGATTCTAATTCAAGGCTGAGAAAGCCTTTATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | CCCCGCTCTGACCTACACAATGTGATACCCAGGGGAGCCTTACCCACCGCTCCTGAGAAGCCTTGTAGGTaGTGTTCTGGCAGTTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: PRSDLHNVIPRGALPTAPEKPCR*CSGSSR Trigger: ACGAGAACTGCCAGAACATCACCTACAAGGCTTCTC...AGGAGCGGTGGGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | CCCCGCTCTGACCTACACAATGTGATACCCAGGGGAGCCTTACCCACCGCTCCTTCACAATACCCGAAGTaGGGAATCTTCAGGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: PRSDLHNVIPRGALPTAPSQYPK*GIFRAA Trigger: TGCAGCCCTGAAGATTCCCCACTTCGGGTATTGTGA...AGGAGCGGTGGGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | CCCCGCTCTGACCTACACAATGTGATACCCAGGGGAGCCTTACCCACCGCTCCTCCTTTTATCTCTTGGTaGGTGTGCTCATCATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: PRSDLHNVIPRGALPTAPPFISW*VCSSWD Trigger: GTCCCATGATGAGCACACTCACCAAGAGATAAAAGG...AGGAGCGGTGGGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | CCCCGCTCTGACCTACACAATGTGATACCCAGGGGAGCCTTACCCACCGCTCCTTCTCAGGGAGTGACGTaGCTGACTGTACTTGAACAA | + |
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Preference number: 4 (lower is better) Translates to: PRSDLHNVIPRGALPTAPSQGVT*LTVLEQ Trigger: TTGTTCAAGTACAGTCAGCCACGTCACTCCCTGAGA...AGGAGCGGTGGGTAAGGCTCCCCTGGGTATCACATTGTGTAGGTCAGAGCGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | GCCTTACCCACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTGAGAAATACGTGAGGGAGGCAGTATaGCTCCTGTCTGCTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: ALPTAPFQQKAQCVSEKYVREAV*LLSAFP Trigger: TGGAAAAGCAGACAGGAGCCATACTGCCTCCCTCAC...GTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGTGGGTAAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TCACTGACACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTGACCTACACAGAAAGGTCCTGTCTTTaGGCTGTGGTGGAGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLTHRSQHHNGSPALTYTERSCL*AVVEVV Trigger: CACCACCTCCACCACAGCCCAAAGACAGGACCTTTC...TGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTGTCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCTCAGGGCTGCAGACATaGTCTTCACCATTGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLSGLQT*SSPLPS Trigger: AGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGA...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | TCACTGACACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTGACCTACACATCGGAGAGTTTGAACTaGACAACCTGTCCCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: SLTHRSQHHNGSPALTYTSESLN*TTCPWS Trigger: GCTCCAGGGACAGGTTGTTCAGTTCAAACTCTCCGA...TGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTGTCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | GCCTTACCCACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTGAGAAATACCAAATTAGAGAAGCGTaGCATGGTGGCCCCATCGAT | + |
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Preference number: 4 (lower is better) Translates to: ALPTAPFQQKAQCVSEKYQIREA*HGGPID Trigger: ATCGATGGGGCCACCATGTCACGCTTCTCTAATTTG...GTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGTGGGTAAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR GCA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCAATATTGTTTTCCATTaGCAGCCGACGCACTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLNIVFH*QPTHCR Trigger: CCTGCAGTGCGTCGGCTGGCAATGGAAAACAATATT...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTCCTGTCTTTGGGCTGTaGTGGAGGTGGTGTGATTTC | + |
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Preference number: 4 (lower is better) Translates to: RVCAGSARPHTLFGNAKSPVFGL*WRWCDF Trigger: GAAATCACACCACCTCCACCACAGCCCAAAGACAGG...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TCACTGACACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTGACCTACACAGAAGAGCCCAGTTTCTaGAGGCGGTTCAGTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: SLTHRSQHHNGSPALTYTEEPSF*RRFSSM Trigger: CATGGAACTGAACCGCCTCCAGAAACTGGGCTCTTC...TGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTGTCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | GAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTTCGATGTCGGAGAGTTTaGACTGAACAACCTGTCCCT | + |
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Preference number: 4 (lower is better) Translates to: EYVLAQRGLTHSLEMRKVRCRRV*TEQPVP Trigger: AGGGACAGGTTGTTCAGTTCAAACTCTCCGACATCG...AACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | TGGCTCTTCTTATTAATACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACGACCCTGTGATCCGCTaGCCAGCTCACATTCATTAT | + |
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Preference number: 4 (lower is better) Translates to: WLFLLIRAPTEGWEDRTDDPVIR*PAHIHY Trigger: ATAATGAATGTGAGCTGGTCAGCGGATCACAGGGTC...GTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTATTAATAAGAAGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR GCA 90 bp | TCACTGACACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTGACCTACACACATGGTCTTCACCATTaGCTTCTGGAAGCCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SLTHRSQHHNGSPALTYTHGLHH*LLEACH Trigger: GTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATG...TGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTGTCAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTTCACAGATGGGCTGTGGTGGAGGTaGTGTGATTTCAGATTTTGG | + |
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Preference number: 4 (lower is better) Translates to: CWLSEASHTLWKCEKFTDGLWWR*CDFRFW Trigger: CCAAAATCTGAAATCACACCACCTCCACCACAGCCC...ATCTGTGAACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | GAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTTGTCTTTGGGCTGTGGTaGAGGTGGTGTGATTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: EYVLAQRGLTHSLEMRKVVFGLW*RWCDFR Trigger: TCTGAAATCACACCACCTCCACCACAGCCCAAAGAC...AACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | TGGCTCTTCTTATTAATACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACGAGGCCTTGTCACTTTaGACTTCACAGATGCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: WLFLLIRAPTEGWEDRTDEALSL*TSQMLS Trigger: TGACAGCATCTGTGAAGTTCAAAGTGACAAGGCCTC...GTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTATTAATAAGAAGAGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTTCTGCCATCTTTTCCTaGGCCAACAACTTCACTCAG | + |
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Preference number: 4 (lower is better) Translates to: RVCAGSARPHTLFGNAKSSAIFS*ANNFTQ Trigger: CTGAGTGAAGTTGTTGGCTCAGGAAAAGATGGCAGA...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TTCACTCAGCTTAATATTGTTTTCCATTGCCAGCCGACGCACTGCAGGCGTTGCAGAGCACACACATTTTaGCTTCAAAACACGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: FTQLNIVFHCQPTHCRRCRAHTF*LQNTGA Trigger: AGCGCCCGTGTTTTGAAGCCAAAATGTGTGTGCTCT...GCAACGCCTGCAGTGCGTCGGCTGGCAATGGAAAACAATATTAAGCTGAGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199614.2 |
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| CDS-3UTR CCA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCACTGTACTTGAACAATaGATAACCCACAGAGCACAC | + |
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Preference number: 4 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLTVLEQ*ITHRAH Trigger: GTGTGCTCTGTGGGTTATCCATTGTTCAAGTACAGT...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTGGAATAAAGGCTTTCTCCCATCGATGACCCTGTaGTCCGCTGACCAGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: TQRSTCLCFSSAWNKGFLPSMTL*SADQLT Trigger: TGTGAGCTGGTCAGCGGATCACAGGGTCATCGATGG...GAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR GCA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTCAGCTCAGTGTCCATTaGTATCCCAATGTTGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RVCAGSARPHTLFGNAKSQLSVH*YPNVVR Trigger: TCTCACAACATTGGGATAGCAATGGACACTGAGCTG...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | GTCAGTGAGAAATACTGTGCTTTAAAGCCCTACCAAGGCAGCACAAACCATTTCAGTCTGACAGCGTTCTaGCTCCAGGTCCTCAGTACA | + |
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Preference number: 4 (lower is better) Translates to: VSEKYCALKPYQGSTNHFSLTAF*LQVLST Trigger: TGTACTGAGGACCTGGAGCCAGAACGCTGTCAGACT...GAAATGGTTTGTGCTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | ACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTGAGAAATACTGTGCTTTATTCACCATTGCCTTCTaGAAGCCTGTCACTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TAPFQQKAQCVSEKYCALFTIAF*KPVTGS Trigger: AGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAA...TAAAGCACAGTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTGAACGTTCTTCACATTaGGGACAATTAACCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RVCAGSARPHTLFGNAKSERSSH*GQLTPA Trigger: AGCTGGGGTTAATTGTCCCCAATGTGAAGAACGTTC...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR GCA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTAGTATGGCTCCTGTCTaGTTTTCCAAAAAGCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RVCAGSARPHTLFGNAKSSMAPV*FSKKLR Trigger: TCTCAGCTTTTTGGAAAAGCAGACAGGAGCCATACT...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | GTCAGTGAGAAATACTGTGCTTTAAAGCCCTACCAAGGCAGCACAAACCATTTCAATGGCTACTTCCGGTaGCAATATCACTGGCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: VSEKYCALKPYQGSTNHFNGYFR*QYHWLG Trigger: GCCAAGCCAGTGATATTGCCACCGGAAGTAGCCATT...GAAATGGTTTGTGCTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | GCGGGGGTTTCAACAACATCTTCCTCTGAATCCTTTAAAGCTTCTGTCTCAATGTCTCAGGGAGTGACGTaGCTGACTGTACTTGAACAA | + |
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Preference number: 4 (lower is better) Translates to: AGVSTTSSSESFKASVSMSQGVT*LTVLEQ Trigger: TTGTTCAAGTACAGTCAGCCACGTCACTCCCTGAGA...CATTGAGACAGAAGCTTTAAAGGATTCAGAGGAAGATGTTGTTGAAACCCCCGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199614.2 |
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| CDS-3UTR TCA 90 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTGGAATAAAGGCTTTCTCTTCGGTCTTTGCCTGTaGACACTGGAGGCTTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: TQRSTCLCFSSAWNKGFLFGLCL*TLEALL Trigger: TAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAA...GAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR TCA 90 bp | GTCAGTGAGAAATACTGTGCTTTAAAGCCCTACCAAGGCAGCACAAACCATTTCCGAAGCTTAACCAGTTaGGTAAGGTCAATCTCATCA | + |
|
Preference number: 4 (lower is better) Translates to: VSEKYCALKPYQGSTNHFRSLTS*VRSISS Trigger: TGATGAGATTGACCTTACTCAACTGGTTAAGCTTCG...GAAATGGTTTGTGCTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CCA 90 bp | TCTTTAAGTATTCTGCCATCTTTTCCTGAGCCAACAACTTCACTCAGCTTAATAAGTCTGACAGCGTTCTaGCTCCAGGTCCTCAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: SLSILPSFPEPTTSLSLISLTAF*LQVLST Trigger: TGTACTGAGGACCTGGAGCCAGAACGCTGTCAGACT...TATTAAGCTGAGTGAAGTTGTTGGCTCAGGAAAAGATGGCAGAATACTTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199614.2 |
||
| CDS-3UTR CCA 90 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTGGAATAAAGGCTTTCTCAGAGCACACACATTTTaGCTTCAAAACACGGGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: TQRSTCLCFSSAWNKGFLRAHTF*LQNTGA Trigger: AGCGCCCGTGTTTTGAAGCCAAAATGTGTGTGCTCT...GAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS GCA 90 bp | TGTCACTGGCTCTGTTCGGTCTTTGCCTGTGAACACTGGAGGCTTTaGTATCGGCGTGGGAAAGGTCCTGTCTTTGGGCTGTGGTGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: CHWLCSVFACEHWRL*YRRGKGPVFGLWWR Trigger: CCTCCACCACAGCCCAAAGACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 90 bp | CTGGAAGCCTGTCACTGGCTCTGTTCGGTCTTTGCCTGTGAACACTaGAGGCTTTGCTATCGGCGTGGGAAAGGTCCTGTCTTTGGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LEACHWLCSVFACEH*RLCYRRGKGPVFGL Trigger: CAGCCCAAAGACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS TCA 90 bp | TTGGAAAGAGTAAATGTCCCTCCTGTAAGGTCGGTGGTACCGAGCTaGCCGGAAGAGCCCAGTTTCTGGAGGCGGTTCAGTTCCATGGCG | + |
|
Preference number: 5 (lower is better) Translates to: LERVNVPPVRSVVPS*PEEPSFWRRFSSMA Trigger: CGCCATGGAACTGAACCGCCTCCAGAAACTGGGCTCTTCCGGTCAGCTCGGTACCACCGACCTTACAGGAGGGACATTTACTCTTTCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS TCA 90 bp | TTGCCTTCTGGAAGCCTGTCACTGGCTCTGTTCGGTCTTTGCCTGTaGACACTGGAGGCTTTGCTATCGGCGTGGGAAAGGTCCTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LPSGSLSLALFGLCL*TLEALLSAWERSCL Trigger: AAGACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCCAGAAGGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 90 bp | AACAACCTGTCCCTGGAGCACGGCCGCTGTTCTCAGGGAGTGACGTaGCTGACTGTACTTGAACAATGGATAACCCACAGAGCACACACA | + |
|
Preference number: 5 (lower is better) Translates to: NNLSLEHGRCSQGVT*LTVLEQWITHRAHT Trigger: TGTGTGTGCTCTGTGGGTTATCCATTGTTCAAGTACAGTCAGCCACGTCACTCCCTGAGAACAGCGGCCGTGCTCCAGGGACAGGTTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 90 bp | CGAGCTGACCGGAAGAGCCCAGTTTCTGGAGGCGGTTCAGTTCCATaGCGATCTCAAATACAGAGCGGACCTGAACGTTCTTCACATTGG | + |
|
Preference number: 5 (lower is better) Translates to: RADRKSPVSGGGSVP*RSQIQSGPERSSHW Trigger: CCAATGTGAAGAACGTTCAGGTCCGCTCTGTATTTGAGATCGCCATGGAACTGAACCGCCTCCAGAAACTGGGCTCTTCCGGTCAGCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 90 bp | TGGGGAATCTTCAGGGCTGCAGACATGGTCTTCACCATTGCCTTCTaGAAGCCTGTCACTGGCTCTGTTCGGTCTTTGCCTGTGAACACT | + |
|
Preference number: 5 (lower is better) Translates to: WGIFRAADMVFTIAF*KPVTGSVRSLPVNT Trigger: AGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CAA 90 bp | AGAGTATGTGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTGGAAAGGTCCTGTCTTaGGGCTGTGGTGGAGGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: RVCAGSARPHTLFGNAKSGKVLS*GCGGGG Trigger: ACCACCTCCACCACAGCCCAAAGACAGGACCTTTCC...ACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCACATACTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CAA 90 bp | TCACTGACACATAGATCTCAGCACCATAATGGAAGCCCCGCTCTGACCTACACAGGCTCTGTTCGGTCTTaGCCTGTGAACACTGGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: SLTHRSQHHNGSPALTYTGSVRS*PVNTGG Trigger: GCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCC...TGTGTAGGTCAGAGCGGGGCTTCCATTATGGTGCTGAGATCTATGTGTCAGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 90 bp | TCTCATCACAATACCCGAAGTGGGGAATCTTCAGGGCTGCAGACATaGTCTTCACCATTGCCTTCTGGAAGCCTGTCACTGGCTCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SHHNTRSGESSGLQT*SSPLPSGSLSLALF Trigger: GAACAGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCCACTTCGGGTATTGTGATGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS-3UTR CAA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCACATGGTCTTCACCATaGCCTTCTGGAAGCCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLTWSSP*PSGSLS Trigger: TGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGT...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CAA 90 bp | TGCTGGCTCAGCGAGGCCTCACACACTCTTTGGAAATGCGAAAAGTTCACAGATCCAGCTCAGTGTCCATaGCTATCCCAATGTTGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: CWLSEASHTLWKCEKFTDPAQCP*LSQCCE Trigger: CTCACAACATTGGGATAGCAATGGACACTGAGCTGG...ATCTGTGAACTTTTCGCATTTCCAAAGAGTGTGTGAGGCCTCGCTGAGCCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS-3UTR CAA 90 bp | TACGTGCTCCTACTGAGGGCTGGGAGGACAGAACAGACTCCAAGACCTTTTCTCCATAGGTTCCACCGATaGATCCAATGTTGGAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: YVLLLRAGRTEQTPRPFLHRFHR*IQCWKE Trigger: CTCTTTCCAACATTGGATCAATCGGTGGAACCTATG...GAGAAAAGGTCTTGGAGTCTGTTCTGTCCTCCCAGCCCTCAGTAGGAGCACGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 90 bp | CCATGGCGATCTCAAATACAGAGCGGACCTGAACGTTCTTCACATTaGGGACAATTAACCCCAGCTCAGTGTCCATTGCTATCCCAATGT | + |
|
Preference number: 5 (lower is better) Translates to: PWRSQIQSGPERSSH*GQLTPAQCPLLSQC Trigger: ACATTGGGATAGCAATGGACACTGAGCTGGGGTTAATTGTCCCCAATGTGAAGAACGTTCAGGTCCGCTCTGTATTTGAGATCGCCATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 90 bp | CGCGCCAAAGCAACAGGTTTCAGCTCTTCTCGAAGCTTAACCAGTTaGGTAAGGTCAATCTCATCACAATACCCGAAGTGGGGAATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: RAKATGFSSSRSLTS*VRSISSQYPKWGIF Trigger: GAAGATTCCCCACTTCGGGTATTGTGATGAGATTGACCTTACTCAACTGGTTAAGCTTCGAGAAGAGCTGAAACCTGTTGCTTTGGCGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 90 bp | TACTTCCGGTGGCAATATCACTGGCTTGGCATAGGTTCCACCGATTaGTCCAATGTTGGAAAGAGTAAATGTCCCTCCTGTAAGGTCGGT | + |
|
Preference number: 5 (lower is better) Translates to: YFRWQYHWLGIGSTD*SNVGKSKCPSCKVG Trigger: ACCGACCTTACAGGAGGGACATTTACTCTTTCCAACATTGGATCAATCGGTGGAACCTATGCCAAGCCAGTGATATTGCCACCGGAAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS-3UTR CAA 90 bp | ACCGCTCCTTTCCAGCAGAAAGCCCAATGTGTCAGTGAGAAATACTGTGCTTTATCGAAGCTTAACCAGTaGAGTAAGGTCAATCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: TAPFQQKAQCVSEKYCALSKLNQ*SKVNLI Trigger: GATGAGATTGACCTTACTCAACTGGTTAAGCTTCGA...TAAAGCACAGTATTTCTCACTGACACATTGGGCTTTCTGCTGGAAAGGAGCGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CAA 90 bp | ACTCAGAGATCCACTTGTCTTTGTTTCTCAAGTGCTTGGAATAAAGGCTTTCTCAGAGGCCTTGTCACTTaGAACTTCACAGATGCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: TQRSTCLCFSSAWNKGFLRGLVT*NFTDAV Trigger: GACAGCATCTGTGAAGTTCAAAGTGACAAGGCCTCT...GAGAAAGCCTTTATTCCAAGCACTTGAGAAACAAAGACAAGTGGATCTCTGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS-3UTR CAA 90 bp | GTCAGTGAGAAATACTGTGCTTTAAAGCCCTACCAAGGCAGCACAAACCATTTCTCACTCAGCTTAATATaGTTTTCCATTGCCAGCCGA | + |
|
Preference number: 5 (lower is better) Translates to: VSEKYCALKPYQGSTNHFSLSLI*FSIASR Trigger: TCGGCTGGCAATGGAAAACAATATTAAGCTGAGTGA...GAAATGGTTTGTGCTGCCTTGGTAGGGCTTTAAAGCACAGTATTTCTCACTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | GGAAGCCTGTCACTGGCTCTGTTCGGTCTTTGCCTGTaGACACTGGAGGCTTTGCTATCGGCGTGGGAAAGG | + |
|
Preference number: 6 (lower is better) Translates to: GSLSLALFGLCL*TLEALLSAWER Trigger: CCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | GTAAATGTCCCTCCTGTAAGGTCGGTGGTACCGAGCTaGCCGGAAGAGCCCAGTTTCTGGAGGCGGTTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: VNVPPVRSVVPS*PEEPSFWRRFS Trigger: ACTGAACCGCCTCCAGAAACTGGGCTCTTCCGGTCAGCTCGGTACCACCGACCTTACAGGAGGGACATTTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CAA 90 bp | ACCCGAAGTGGGGAATCTTCAGGGCTGCAGACATGGTCTTCACCATaGCCTTCTGGAAGCCTGTCACTGGCTCTGTTCGGTCTTTGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: TRSGESSGLQTWSSP*PSGSLSLALFGLCL Trigger: CAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCCACTTCGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS GCA 72 bp | CTCTGTTCGGTCTTTGCCTGTGAACACTGGAGGCTTTaGTATCGGCGTGGGAAAGGTCCTGTCTTTGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LCSVFACEHWRL*YRRGKGPVFGL Trigger: CAGCCCAAAGACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 72 bp | TCCCTGGAGCACGGCCGCTGTTCTCAGGGAGTGACGTaGCTGACTGTACTTGAACAATGGATAACCCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: SLEHGRCSQGVT*LTVLEQWITHR Trigger: TCTGTGGGTTATCCATTGTTCAAGTACAGTCAGCCACGTCACTCCCTGAGAACAGCGGCCGTGCTCCAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 72 bp | TGTCACTGGCTCTGTTCGGTCTTTGCCTGTGAACACTaGAGGCTTTGCTATCGGCGTGGGAAAGGTCCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: CHWLCSVFACEH*RLCYRRGKGPV Trigger: GACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CAA 72 bp | GGGGAATCTTCAGGGCTGCAGACATGGTCTTCACCATaGCCTTCTGGAAGCCTGTCACTGGCTCTGTTCGGT | + |
|
Preference number: 6 (lower is better) Translates to: GESSGLQTWSSP*PSGSLSLALFG Trigger: ACCGAACAGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS TCA 72 bp | TCTCGAATTCCTTCTCCGATGTCGGAGAGTTTGAACTaGACAACCTGTCCCTGGAGCACGGCCGCTGTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: SRIPSPMSESLN*TTCPWSTAAVL Trigger: GAGAACAGCGGCCGTGCTCCAGGGACAGGTTGTTCAGTTCAAACTCTCCGACATCGGAGAAGGAATTCGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | GAGAAGCGTGACATGGTGGCCCCATCGATGACCCTGTaGTCCGCTGACCAGCTCACATTCATTATCTGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: EKRDMVAPSMTL*SADQLTFIICA Trigger: AGCACAGATAATGAATGTGAGCTGGTCAGCGGATCACAGGGTCATCGATGGGGCCACCATGTCACGCTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
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| CDS CCA 72 bp | CATGGTCTTCACCATTGCCTTCTGGAAGCCTGTCACTaGCTCTGTTCGGTCTTTGCCTGTGAACACTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: HGLHHCLLEACH*LCSVFACEHWR Trigger: CCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | CGGAAGAGCCCAGTTTCTGGAGGCGGTTCAGTTCCATaGCGATCTCAAATACAGAGCGGACCTGAACGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: RKSPVSGGGSVP*RSQIQSGPERS Trigger: AGAACGTTCAGGTCCGCTCTGTATTTGAGATCGCCATGGAACTGAACCGCCTCCAGAAACTGGGCTCTTCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | CTTAATCGCTCCCAGGGCACCAATGGCTACTTCCGGTaGCAATATCACTGGCTTGGCATAGGTTCCACCGAT | + |
|
Preference number: 6 (lower is better) Translates to: LNRSQGTNGYFR*QYHWLGIGSTD Trigger: ATCGGTGGAACCTATGCCAAGCCAGTGATATTGCCACCGGAAGTAGCCATTGGTGCCCTGGGAGCGATTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | TTACTTCTCGAATTCCTTCTCCGATGTCGGAGAGTTTaGACTGAACAACCTGTCCCTGGAGCACGGCCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LLLEFLLRCRRV*TEQPVPGARPL Trigger: CAGCGGCCGTGCTCCAGGGACAGGTTGTTCAGTTCAAACTCTCCGACATCGGAGAAGGAATTCGAGAAGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | AATACCCGAAGTGGGGAATCTTCAGGGCTGCAGACATaGTCTTCACCATTGCCTTCTGGAAGCCTGTCACTG | + |
|
Preference number: 6 (lower is better) Translates to: NTRSGESSGLQT*SSPLPSGSLSL Trigger: CAGTGACAGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCCACTTCGGGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS GCA 72 bp | CAGTTCTCGTCCACGGAGGCATTGAGGATAGGAAACTaGAGGAGTCCCAGAGAAGCAGCCTTTAAGAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: QFSSTEALRIGN*RSPREAAFKKK Trigger: CTTCTTCTTAAAGGCTGCTTCTCTGGGACTCCTGCAGTTTCCTATCCTCAATGCCTCCGTGGACGAGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CAA 90 bp | AGTCCCAGAGAAGCAGCCTTTAAGAAGAAGGGCATGAAGGAGAGTTaGATTCCACGCGCCAAAGCAACAGGTTTCAGCTCTTCTCGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: SPREAAFKKKGMKES*IPRAKATGFSSSRS Trigger: GCTTCGAGAAGAGCTGAAACCTGTTGCTTTGGCGCGTGGAATCAAACTCTCCTTCATGCCCTTCTTCTTAAAGGCTGCTTCTCTGGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | TTCAGTTCCATGGCGATCTCAAATACAGAGCGGACCTaGACGTTCTTCACATTGGGGACAATTAACCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FSSMAISNTERT*TFFTLGTINPS Trigger: GCTGGGGTTAATTGTCCCCAATGTGAAGAACGTTCAGGTCCGCTCTGTATTTGAGATCGCCATGGAACTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | CACCAATGGCTACTTCCGGTGGCAATATCACTGGCTTaGCATAGGTTCCACCGATTGATCCAATGTTGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: HQWLLPVAISLA*HRFHRLIQCWK Trigger: TTTCCAACATTGGATCAATCGGTGGAACCTATGCCAAGCCAGTGATATTGCCACCGGAAGTAGCCATTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CAA 72 bp | GAAGCAGCCTTTAAGAAGAAGGGCATGAAGGAGAGTTaGATTCCACGCGCCAAAGCAACAGGTTTCAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: EAAFKKKGMKES*IPRAKATGFSS Trigger: AGAGCTGAAACCTGTTGCTTTGGCGCGTGGAATCAAACTCTCCTTCATGCCCTTCTTCTTAAAGGCTGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CAA 90 bp | ACGCGCCAAAGCAACAGGTTTCAGCTCTTCTCGAAGCTTAACCAGTaGAGTAAGGTCAATCTCATCACAATACCCGAAGTGGGGAATCTT | + |
|
Preference number: 6 (lower is better) Translates to: TRQSNRFQLFSKLNQ*SKVNLITIPEVGNL Trigger: AAGATTCCCCACTTCGGGTATTGTGATGAGATTGACCTTACTCAACTGGTTAAGCTTCGAGAAGAGCTGAAACCTGTTGCTTTGGCGCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | TCTCAAATACAGAGCGGACCTGAACGTTCTTCACATTaGGGACAATTAACCCCAGCTCAGTGTCCATTGCTA | + |
|
Preference number: 6 (lower is better) Translates to: SQIQSGPERSSH*GQLTPAQCPLL Trigger: TAGCAATGGACACTGAGCTGGGGTTAATTGTCCCCAATGTGAAGAACGTTCAGGTCCGCTCTGTATTTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS TCA 72 bp | TGGCAATATCACTGGCTTGGCATAGGTTCCACCGATTaGTCCAATGTTGGAAAGAGTAAATGTCCCTCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: WQYHWLGIGSTD*SNVGKSKCPSC Trigger: ACAGGAGGGACATTTACTCTTTCCAACATTGGATCAATCGGTGGAACCTATGCCAAGCCAGTGATATTGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CAA 72 bp | AGCAACAGGTTTCAGCTCTTCTCGAAGCTTAACCAGTaGAGTAAGGTCAATCTCATCACAATACCCGAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SNRFQLFSKLNQ*SKVNLITIPEV Trigger: CACTTCGGGTATTGTGATGAGATTGACCTTACTCAACTGGTTAAGCTTCGAGAAGAGCTGAAACCTGTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000349.11 |
||
| CDS CCA 72 bp | CTTGAACAATGGATAACCCACAGAGCACACACATTTTaGCTTCAAAACACGGGCGCTATTAAATGTCTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: LEQWITHRAHTF*LQNTGAIKCLK Trigger: TTTCAGACATTTAATAGCGCCCGTGTTTTGAAGCCAAAATGTGTGTGCTCTGTGGGTTATCCATTGTTCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000349.11 ENSMUST00000199614.2 |
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