Pregenerated sensors for DBF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002297Ensembl transcript IDs: ENSMUST00000002368.16, ENSMUST00000163141.3, ENSMUST00000168500.8, ENSMUST00000171808.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGGGTCTACTCTCTGTTCTCCGTCATTTCTACCCTCGGTCACTTaGTGTTCCGGTGTGCTGTCACGCAGAGGTAGCTGTGCATACTCC | + |
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Preference number: 1 (lower is better) Translates to: AGSTLCSPSFLPSVT*CSGVLSRRGSCAYS Trigger: GGAGTATGCACAGCTACCTCTGCGTGACAGCACACCGGAACACCAAGTGACCGAGGGTAGAAATGACGGAGAACAGAGAGTAGACCCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR GCA 90 bp | TGGTGTTCCGGTGTGCTGTCACGCAGAGGTAGCTGTGCATACTCCTaGTCTGGGTCAGGCTCACTTGCATTGAACATGCTCACTGGTTTC | + |
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Preference number: 1 (lower is better) Translates to: WCSGVLSRRGSCAYS*SGSGSLALNMLTGF Trigger: GAAACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACAGCTACCTCTGCGTGACAGCACACCGGAACACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR TCA 90 bp | ATTTTACCACAAGGCAAATTCTCCATGTTCTCAGTGTCACACTCATaGGGCTCCTGGGGACTACAGGGTGGAGTTCTCGCCTTCATTGTT | + |
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Preference number: 1 (lower is better) Translates to: ILPQGKFSMFSVSHS*GSWGLQGGVLAFIV Trigger: AACAATGAAGGCGAGAACTCCACCCTGTAGTCCCCAGGAGCCTCATGAGTGTGACACTGAGAACATGGAGAATTTGCCTTGTGGTAAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR GCA 90 bp | CTCTTTTTATCCAATTCAGCACTCGGTTCAGCATTTGCTTTCTGTTaGCCTAATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGC | + |
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Preference number: 1 (lower is better) Translates to: LFLSNSALGSAFAFC*PNSILTFRWILPQG Trigger: GCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAAAGCAAATGCTGAACCGAGTGCTGAATTGGATAAAAAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 90 bp | TCACTGGTTTCCTGTCACATCCTTTCAATCCAGCTGAAGAATAGGTaGTGGGCTCTGAAGCAAACCCATGCTTTTCTTCAGGTTTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SLVSCHILSIQLKNR*WALKQTHAFLQVSG Trigger: CCCAGAAACCTGAAGAAAAGCATGGGTTTGCTTCAGAGCCCACAACCTATTCTTCAGCTGGATTGAAAGGATGTGACAGGAAACCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 90 bp | GGGGACTACAGGGTGGAGTTCTCGCCTTCATTGTTAGCTGCTCTTTaGATGTATTTAATGCCACCAGGTCAGAAGCATGACCTATCACAA | + |
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Preference number: 2 (lower is better) Translates to: GDYRVEFSPSLLAAL*MYLMPPGQKHDLSQ Trigger: TTGTGATAGGTCATGCTTCTGACCTGGTGGCATTAAATACATCAAAAGAGCAGCTAACAATGAAGGCGAGAACTCCACCCTGTAGTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR TCA 90 bp | TCGGTTCAGCATTTGCTTTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGAATAGGTTGTGGGCTCTaGAGCAAACCCATGCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: SVQHLLSVALIAFSLSAGIGCGL*SKPMLF Trigger: GAAAAGCATGGGTTTGCTTCAGAGCCCACAACCTAT...TCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAAAGCAAATGCTGAACCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR TCA 90 bp | TTTTTATCCAATTCAGCACTCGGTTCAGCATTTGCTTTCTGTTGCCCTAATAGCTCAGTGTCACACTCATaGGGCTCCTGGGGACTACAG | + |
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Preference number: 2 (lower is better) Translates to: FLSNSALGSAFAFCCPNSSVSHS*GSWGLQ Trigger: CTGTAGTCCCCAGGAGCCTCATGAGTGTGACACTGA...GCTATTAGGGCAACAGAAAGCAAATGCTGAACCGAGTGCTGAATTGGATAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR GCA 90 bp | ATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCTTGGTGTTCCGGTGTaGTGTCACGCAGAGGTAGCT | + |
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Preference number: 2 (lower is better) Translates to: IAFSLSAGFYHKANSPCSLGVPV*CHAEVA Trigger: AGCTACCTCTGCGTGACAGCACACCGGAACACCAAG...AGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAACTGGGGACTACAGGGTaGAGTTCTCGCCTTCATTGT | + |
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Preference number: 2 (lower is better) Translates to: FCCPNSILTFRWILPQGKLGTTG*SSRLHC Trigger: ACAATGAAGGCGAGAACTCCACCCTGTAGTCCCCAG...TTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCTTTTTCTGAAGCAAACCCATaGTTTTCTTCAGGTTTCTGG | + |
|
Preference number: 2 (lower is better) Translates to: LVTHKFCLHVQEDTQFSFSEANP*FSSGFW Trigger: CCAGAAACCTGAAGAAAAGCATGGGTTTGCTTCAGA...AAAAGAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR CCA 90 bp | AGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCACTGAAGAATAGGTTGTaGGCTCTGAAGCAAACCCAT | + |
|
Preference number: 2 (lower is better) Translates to: SILTFRWILPQGKFSMFSLKNRL*ALKQTH Trigger: ATGGGTTTGCTTCAGAGCCCACAACCTATTCTTCAG...TGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCTTTTGCATTTGCTTTCTGTTaGCCTAATAGCATTCTCACT | + |
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Preference number: 2 (lower is better) Translates to: LVTHKFCLHVQEDTQFSFAFAFC*PNSILT Trigger: AGTGAGAATGCTATTAGGGCAACAGAAAGCAAATGC...AAAAGAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCAGATTACTTTCTGTACTaGGATGAGAAACTTGTCCAC | + |
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Preference number: 2 (lower is better) Translates to: SILTFRWILPQGKFSMFSDYFLY*DEKLVH Trigger: GTGGACAAGTTTCTCATCTCAGTACAGAAAGTAATC...TGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR CCA 90 bp | ATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTATTGAACATGCTCACTaGTTTCCTGTCACATCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: IAFSLSAGFYHKANSPCSIEHAH*FPVTSF Trigger: AAAGGATGTGACAGGAAACCAGTGAGCATGTTCAAT...AGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR GCA 72 bp | GGTGTGCTGTCACGCAGAGGTAGCTGTGCATACTCCTaGTCTGGGTCAGGCTCACTTGCATTGAACATGCTC | + |
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Preference number: 3 (lower is better) Translates to: GVLSRRGSCAYS*SGSGSLALNML Trigger: GAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACAGCTACCTCTGCGTGACAGCACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR GCA 72 bp | CGTCATTTCTACCCTCGGTCACTTGGTGTTCCGGTGTaGTGTCACGCAGAGGTAGCTGTGCATACTCCTGCT | + |
|
Preference number: 3 (lower is better) Translates to: RHFYPRSLGVPV*CHAEVAVHTPA Trigger: AGCAGGAGTATGCACAGCTACCTCTGCGTGACAGCACACCGGAACACCAAGTGACCGAGGGTAGAAATGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CCA 72 bp | ACTCTCTGTTCTCCGTCATTTCTACCCTCGGTCACTTaGTGTTCCGGTGTGCTGTCACGCAGAGGTAGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: TLCSPSFLPSVT*CSGVLSRRGSC Trigger: ACAGCTACCTCTGCGTGACAGCACACCGGAACACCAAGTGACCGAGGGTAGAAATGACGGAGAACAGAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR CAA 90 bp | TGTGCATACTCCTGCTCTGGGTCAGGCTCACTTGCATTGAACATGCTCACTGGTCAGCTGAAGAATAGGTaGTGGGCTCTGAAGCAAACC | + |
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Preference number: 3 (lower is better) Translates to: CAYSCSGSGSLALNMLTGQLKNR*WALKQT Trigger: GGTTTGCTTCAGAGCCCACAACCTATTCTTCAGCTG...ACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR TCA 72 bp | GTGCATACTCCTGCTCTGGGTCAGGCTCACTTGCATTaGACATGCTCACTGGTTTCCTGTCACATCCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: VHTPALGQAHLH*TCSLVSCHILS Trigger: TGAAAGGATGTGACAGGAAACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR TCA 72 bp | ATTACTTTCTGTACTGAGATGAGAAACTTGTCCACATaGCTGCGACACGCCTGGAGCAGGGTCTACTCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: ITFCTEMRNLST*LRHAWSRVYSL Trigger: CAGAGAGTAGACCCTGCTCCAGGCGTGTCGCAGTCATGTGGACAAGTTTCTCATCTCAGTACAGAAAGTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR TCA 72 bp | AACTGTGGTTGGGGTAGATTACTTTCTGTACTGAGATaGGAAACTTGTCCACATGACTGCGACACGCCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: NCGWGRLLSVLR*ETCPHDCDTPG Trigger: TCCAGGCGTGTCGCAGTCATGTGGACAAGTTTCTCATCTCAGTACAGAAAGTAATCTACCCCAACCACAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR TCA 72 bp | CAGCTAACTGTGGTTGGGGTAGATTACTTTCTGTACTaGGATGAGAAACTTGTCCACATGACTGCGACACGC | + |
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Preference number: 3 (lower is better) Translates to: QLTVVGVDYFLY*DEKLVHMTATR Trigger: GCGTGTCGCAGTCATGTGGACAAGTTTCTCATCTCAGTACAGAAAGTAATCTACCCCAACCACAGTTAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCAGTGTCTCAGGCTCACTTGCATaGAACATGCTCACTGGTTTC | + |
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Preference number: 3 (lower is better) Translates to: SHFPLDFTTRQILHVLSVSGSLA*NMLTGF Trigger: GAAACCAGTGAGCATGTTCAATGCAAGTGAGCCTGA...GACACTGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CCA 72 bp | TGTCACATCCTTTCAATCCAGCTGAAGAATAGGTTGTaGGCTCTGAAGCAAACCCATGCTTTTCTTCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: CHILSIQLKNRL*ALKQTHAFLQV Trigger: AACCTGAAGAAAAGCATGGGTTTGCTTCAGAGCCCACAACCTATTCTTCAGCTGGATTGAAAGGATGTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CCA 72 bp | GCTTTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTaGATTTTACCACAAGGCAAATTCTCCATGTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: AFCCPNSILTFR*ILPQGKFSMFS Trigger: TGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | TGTGCATACTCCTGCTCTGGGTCAGGCTCACTTGCATTGAACATGCTCACTGGTGCCACCCGGGAGAGGTaGTTTGCTGTGGATCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: CAYSCSGSGSLALNMLTGATRER*FAVDPH Trigger: ATGAGGATCCACAGCAAAGCACCTCTCCCGGGTGGC...ACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 72 bp | TGTGCATACTCCTGCTCTGGGTCAGGCTCACTTGCATaGAACATGCTCACTGGTTTCCTGTCACATCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: CAYSCSGSGSLA*NMLTGFLSHPF Trigger: GAAAGGATGTGACAGGAAACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | GGTGGAGTTCTCGCCTTCATTGTTAGCTGCTCTTTTGATGTATTTAATGCCACCCCGGGAGAGGTGCTTTaGTGTGGATCCTCATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: GGVLAFIVSCSFDVFNATPGEVL*CGSSWS Trigger: AGACCATGAGGATCCACAGCAAAGCACCTCTCCCGG...GGTGGCATTAAATACATCAAAAGAGCAGCTAACAATGAAGGCGAGAACTCCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 72 bp | GCTCCTGGGGACTACAGGGTGGAGTTCTCGCCTTCATaGTTAGCTGCTCTTTTGATGTATTTAATGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: APGDYRVEFSPS*LAALLMYLMPP Trigger: TGGTGGCATTAAATACATCAAAAGAGCAGCTAACAATGAAGGCGAGAACTCCACCCTGTAGTCCCCAGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | TGTGCATACTCCTGCTCTGGGTCAGGCTCACTTGCATTGAACATGCTCACTGGTGCGACCCAATGTCTGTaGATACTTTGCTTCCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: CAYSCSGSGSLALNMLTGATQCL*ILCFLF Trigger: AAAAAGGAAGCAAAGTATGCACAGACATTGGGTCGC...ACCAGTGAGCATGTTCAATGCAAGTGAGCCTGACCCAGAGCAGGAGTATGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | TTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCAGTGTCATTTCTGTCTTGGATaGCACCCGGGAGAGGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: FSLSAGFYHKANSPCSQCHFCLG*HPGEVL Trigger: AAGCACCTCTCCCGGGTGGCATCCAAGACAGAAATG...ACACTGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CCA 90 bp | AGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCAAGAGGTGCTTTGCTGTaGATCCTCATGGTCTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: SILTFRWILPQGKFSMFSRGALL*ILMVSR Trigger: CCTCGAGACCATGAGGATCCACAGCAAAGCACCTCT...TGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CCA 90 bp | TCGGTTCAGCATTTGCTTTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGATTTTCATTTCTGTCTTaGATGCCACCCGGGAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: SVQHLLSVALIAFSLSAGFSFLS*MPPGRG Trigger: ACCTCTCCCGGGTGGCATCCAAGACAGAAATGAAAA...TCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAAAGCAAATGCTGAACCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CCA 90 bp | AGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATTCTCCATGTTCTCACGTCCTTCTGGAAATTaGGCTCCAAGAGTGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SILTFRWILPQGKFSMFSRPSGN*APRVAS Trigger: AGAAGCCACTCTTGGAGCCCAATTTCCAGAAGGACG...TGAGAACATGGAGAATTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 72 bp | TCCTGTCACATCCTTTCAATCCAGCTGAAGAATAGGTaGTGGGCTCTGAAGCAAACCCATGCTTTTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SCHILSIQLKNR*WALKQTHAFLQ Trigger: CTGAAGAAAAGCATGGGTTTGCTTCAGAGCCCACAACCTATTCTTCAGCTGGATTGAAAGGATGTGACAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CCA 90 bp | GACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCTTTTTATCCCAACTGGAGTTGAACTaGGGTTCCACATTTATCGCC | + |
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Preference number: 4 (lower is better) Translates to: DPQVLSSCAGRYSVLFLSQLELN*GSTFIA Trigger: GGCGATAAATGTGGAACCCCAGTTCAACTCCAGTTG...GGATAAAAAGAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | ACTGTACTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCCTTGAGTGCACTCAGTaGTTTCTTCTTCTGTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: TVLVTHKFCLHVQEDTQFLECTQ*FLLLFN Trigger: ATTGAACAGAAGAAGAAAGCACTGAGTGCACTCAAG...GAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAGTACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAATGGCTTCTCCTTCGGTaGAGTGTTTTTCAGGACATT | + |
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Preference number: 4 (lower is better) Translates to: FCCPNSILTFRWILPQGKWLLLR*SVFQDI Trigger: AATGTCCTGAAAAACACTGCACCGAAGGAGAAGCCA...TTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR GCA 90 bp | ACTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCTTTACTGGATTTCTTGAGTaGACTCAGTGCTTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TGDPQVLSSCAGRYSVLFTGFLE*TQCFLL Trigger: AAGAAGAAAGCACTGAGTGCACTCAAGAAATCCAGT...AAAGAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CCA 90 bp | TTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAACAGGGATTTCAAGGATaGTCGATTCTTTTCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: FCCPNSILTFRWILPQGKQGFQG*SILFIS Trigger: AGAAATGAAAAGAATCGACCATCCTTGAAATCCCTG...TTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| 3UTR CAA 72 bp | TTCTCTTTTTATCCAATTCAGCACTCGGTTCAGCATTaGCTTTCTGTTGCCCTAATAGCATTCTCACTTTCC | + |
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Preference number: 4 (lower is better) Translates to: FSFYPIQHSVQH*LSVALIAFSLS Trigger: GGAAAGTGAGAATGCTATTAGGGCAACAGAAAGCAAATGCTGAACCGAGTGCTGAATTGGATAAAAAGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CAA 90 bp | TTTTTATCCAATTCAGCACTCGGTTCAGCATTTGCTTTCTGTTGCCCTAATAGCCCCGGGAGAGGTGCTTaGCTGTGGATCCTCATGGTC | + |
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Preference number: 5 (lower is better) Translates to: FLSNSALGSAFAFCCPNSPGRGA*LWILMV Trigger: GACCATGAGGATCCACAGCAAAGCACCTCTCCCGGG...GCTATTAGGGCAACAGAAAGCAAATGCTGAACCGAGTGCTGAATTGGATAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CAA 90 bp | TGTACTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCACGTCCTTCTGGAAATaGGGCTCCAAGAGTGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: CTGDPQVLSSCAGRYSVLTSFWK*GSKSGF Trigger: GAAGCCACTCTTGGAGCCCAATTTCCAGAAGGACGT...GAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CAA 90 bp | TGCAGATCTTTTGCTGAAAGCTGTGTAATGTCTGCAGCTAACTGTGGTTGGGGTGAAGCACTGGATTTCTaGAGTGCACTCAGTGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: CRSFAESCVMSAANCGWGEALDF*SALSAF Trigger: GAAAGCACTGAGTGCACTCAAGAAATCCAGTGCTTC...ACCCCAACCACAGTTAGCTGCAGACATTACACAGCTTTCAGCAAAAGATCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CAA 90 bp | TTCTGTTGCCCTAATAGCATTCTCACTTTCCGCTGGATTTTACCACAAGGCAAACCCTGTTCTTGTCTTTaGTATTCCAGGACCAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: FCCPNSILTFRWILPQGKPCSCL*YSRTSF Trigger: AAAGCTGGTCCTGGAATACAAAAGACAAGAACAGGG...TTTGCCTTGTGGTAAAATCCAGCGGAAAGTGAGAATGCTATTAGGGCAACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS-3UTR CAA 90 bp | CTGGTGACCCACAAGTTCTGTCTTCATGTGCAGGAAGATACTCAGTTCTCTTTTCAAACATACTCTGTCTaGAGACTTAAAGGAACTTCC | + |
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Preference number: 5 (lower is better) Translates to: LVTHKFCLHVQEDTQFSFQTYSV*RLKGTS Trigger: GGAAGTTCCTTTAAGTCTCAAGACAGAGTATGTTTG...AAAAGAGAACTGAGTATCTTCCTGCACATGAAGACAGAACTTGTGGGTCACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168500.8 |
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| CDS CCA 72 bp | GGTGCCCACTGCTTTCGCCCACGTCCTTCTGGAAATTaGGCTCCAAGAGTGGCTTCTCCTTCGGTGCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: GAHCFRPRPSGN*APRVASPSVQC Trigger: ACACTGCACCGAAGGAGAAGCCACTCTTGGAGCCCAATTTCCAGAAGGACGTGGGCGAAAGCAGTGGGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000168500.8 ENSMUST00000171808.8 |
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| CDS CCA 72 bp | TTGAGCAGGTGCCCACTGCTTTCGCCCACGTCCTTCTaGAAATTGGGCTCCAAGAGTGGCTTCTCCTTCGGT | + |
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Preference number: 6 (lower is better) Translates to: LSRCPLLSPTSF*KLGSKSGFSFG Trigger: ACCGAAGGAGAAGCCACTCTTGGAGCCCAATTTCCAGAAGGACGTGGGCGAAAGCAGTGGGCACCTGCTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000168500.8 ENSMUST00000171808.8 |
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| CDS TCA 72 bp | CCATGCTTTTCTTCAGGTTTCTGGGTTTCTTCATACTaGGAGTTCGGCTTGAGCAGGTGCCCACTGCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: PCFSSGFWVSSY*EFGLSRCPLLS Trigger: CGAAAGCAGTGGGCACCTGCTCAAGCCGAACTCTCAGTATGAAGAAACCCAGAAACCTGAAGAAAAGCATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002368.16 ENSMUST00000171808.8 |
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| CDS CCA 72 bp | GATTTCAAGGATGGTCGATTCTTTTCATTTCTGTCTTaGATGCCACCCGGGAGAGGTGCTTTGCTGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: DFKDGRFFSFLS*MPPGRGALLWI Trigger: GATCCACAGCAAAGCACCTCTCCCGGGTGGCATCCAAGACAGAAATGAAAAGAATCGACCATCCTTGAAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000168500.8 ENSMUST00000171808.8 |
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| CDS CAA 72 bp | GGATTTCAAGGATGGTCGATTCTTTTCATTTCTGTCTaGGATGCCACCCGGGAGAGGTGCTTTGCTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GFQGWSILFISV*DATRERCFAVD Trigger: ATCCACAGCAAAGCACCTCTCCCGGGTGGCATCCAAGACAGAAATGAAAAGAATCGACCATCCTTGAAATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000168500.8 ENSMUST00000171808.8 |
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| CDS CCA 72 bp | TTCCAGTCTATTATCAGCCTTCAGGGATTTCAAGGATaGTCGATTCTTTTCATTTCTGTCTTGGATGCCACC | + |
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Preference number: 6 (lower is better) Translates to: FQSIISLQGFQG*SILFISVLDAT Trigger: GGTGGCATCCAAGACAGAAATGAAAAGAATCGACCATCCTTGAAATCCCTGAAGGCTGATAATAGACTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000168500.8 ENSMUST00000171808.8 |
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| CDS GCA 72 bp | TACAATATCATCAACAACTTGATACTGGTTACTCTGTaGAAAGTTCCTGTGTTTCTCACTCAGAAGGTGAGT | + |
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Preference number: 6 (lower is better) Translates to: YNIINNLILVTL*KVPVFLTQKVS Trigger: ACTCACCTTCTGAGTGAGAAACACAGGAACTTTGCACAGAGTAACCAGTATCAAGTTGTTGATGATATTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002368.16 ENSMUST00000163141.3 ENSMUST00000171808.8 |
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