Pregenerated sensors for DARS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026356Ensembl transcript IDs: ENSMUST00000027602.15, ENSMUST00000064309.9
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCTGATCTACATAGGGTTTCAGGCTACCATAACTGCACAGAAAGACCCTGCCTCAATGACTCACACCTTTaGTCCAGTGCTCATGTGCAT | + |
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Preference number: 2 (lower is better) Translates to: PDLHRVSGYHNCTERPCLNDSHL*SSAHVH Trigger: ATGCACATGAGCACTGGATCAAAGGTGTGAGTCATT...GAGGCAGGGTCTTTCTGTGCAGTTATGGTAGCCTGAAACCCTATGTAGATCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| 3UTR-3UTR GCA 90 bp | CATAGGGTTTCAGGCTACCATAACTGCACAGAAAGACCCTGCCTCCAAAAACAAGATCCAGTGCTCATGTaGATATACCCACACAAATAC | + |
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Preference number: 2 (lower is better) Translates to: HRVSGYHNCTERPCLQKQDPVLM*IYPHKY Trigger: GTATTTGTGTGGGTATATGCACATGAGCACTGGATC...TTGTTTTTGGAGGCAGGGTCTTTCTGTGCAGTTATGGTAGCCTGAAACCCTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGATGCCACCACCAGCATaGGGAGGAGCTCCAAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVMPPPA*GGAPKR Trigger: CCGCTTTGGAGCTCCTCCTCATGCTGGTGGTGGCAT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGAACCATCTGCTTGCTTaGATGGTCTCCCACCGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVNHLLA*MVSHRH Trigger: GTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGATGGCATCATCCAGCTaGAAGGGCAGGCGAGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVMASSS*KGRRGS Trigger: TGAACCTCGCCTGCCCTTGCAGCTGGATGATGCCAT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGTCACGAGGGAACATTaGGGTCTGGCGTACGTTATG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVVTREH*GLAYVM Trigger: CATAACGTACGCCAGACCTCAATGTTCCCTCGTGAC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | CTACATAGGGTTTCAGGCTACCATAACTGCACAGAAAGACCCTGCCTCCAAAAAGCTTGTATGAACTCTTaGACGGACCCAAACAACATC | + |
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Preference number: 4 (lower is better) Translates to: LHRVSGYHNCTERPCLQKACMNS*TDPNNI Trigger: GATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGC...TTTTTGGAGGCAGGGTCTTTCTGTGCAGTTATGGTAGCCTGAAACCCTATGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR CCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGATCTGCTTGCTTGCATaGTCTCCCACCGCCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVICLLA*SPTATR Trigger: TCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGAT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | GTACACATCTTTAATCCTAGCAACAGCAGGTTGATTTCTGTGAGTTCAAGGCCATTTGCTCTGCTTGTATaGACTCTTGCACGGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: VHIFNPSNSRLISVSSRPFALLV*TLARTQ Trigger: TTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAA...TGGCCTTGAACTCACAGAAATCAACCTGCTGTTGCTAGGATTAAAGATGTGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGAGACGGAAGATGGCCTaGCTAGTTGATGTCCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVRRKMA*LVDVLR Trigger: CCTTAGGACATCAACTAGTCAGGCCATCTTCCGTCT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGCCTGGACATTAAACTaGTGCTGCCTCAGGACTAAG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVAWTLN*CCLRTK Trigger: CTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGGGAAGAGATGGCAGATaGCGGACTGGAGACGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLGRDGR*RTGDGR Trigger: TCTTCCGTCTCCAGTCCGGCATCTGCCATCTCTTCC...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGCCACTTCAGGCCGAATaGCATCATCCAGCTGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLPLQAE*HHPAAR Trigger: CCTTGCAGCTGGATGATGCCATTCGGCCTGAAGTGG...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | CATAGGGTTTCAGGCTACCATAACTGCACAGAAAGACCCTGCCTCCAAAAACAAACATCATCAGCTTTTTaGACTGTCAGGTCCTTAACT | + |
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Preference number: 4 (lower is better) Translates to: HRVSGYHNCTERPCLQKQTSSAF*TVRSLT Trigger: AGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGT...TTGTTTTTGGAGGCAGGGTCTTTCTGTGCAGTTATGGTAGCCTGAAACCCTATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGTGGAGTCTTCAGCTCTaGAAACTGGTCCAATGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVWSLQL*KLVQCR Trigger: TCTGCATTGGACCAGTTTTCAGAGCTGAAGACTCCA...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AACACAATGACTCACACCTTTGATCCAGTGCTCATGTGCATATACCCACACAAACCCAGTCTTTTGCTCTaGTTGTATGAACTCTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: NTMTHTFDPVLMCIYPHKPSLLL*LYELLH Trigger: GTGCAAGAGTTCATACAAGCAGAGCAAAAGACTGGG...TTTGTGTGGGTATATGCACATGAGCACTGGATCAAAGGTGTGAGTCATTGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR CCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGACCGCCACAAGAGCCTaGACATTAAACTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLTATRA*TLNCCC Trigger: GCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGT...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGAGGTTCAGCCAAGCTaGTCACATAAATCTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVEVQPS*SHKSSG Trigger: TCCAGAAGATTTATGTGATCAGCTTGGCTGAACCTC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGTTGGCTCCAAAAATTTaGACGGCTCACATGGGAACT | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVLAPKI*TAHMGT Trigger: AGTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAA...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGCTTGTATGAACTCTTaGACGGACCCAAACAACATC | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVACMNS*TDPNNI Trigger: GATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGAGGACTAAGAAGCACTaGTTCCCTTTTGCTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVRTKKH*FPFALL Trigger: AAGCAGAGCAAAAGGGAAGCAGTGCTTCTTAGTCCT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGTGGACATTAAACTGCTaGTGCCTCAGGACTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVWTLNC*CLRTKK Trigger: CTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCA...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTACACATCTTTAATCCTAGCAACAGCAGGTTGATTTCTGTGAGTTCAAGGCCAAGGTTCCCAGTCTTTTaGTCTGCTTGTATGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: VHIFNPSNSRLISVSSRPRFPVF*SACMNS Trigger: AGAGTTCATACAAGCAGAGCAAAAGACTGGGAACCT...TGGCCTTGAACTCACAGAAATCAACCTGCTGTTGCTAGGATTAAAGATGTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTGTTTCTCGGAAGAGATaGCAGATGCCGGACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFVSRKR*QMPDWR Trigger: TCTCCAGTCCGGCATCTGCCATCTCTTCCGAGAAAC...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGCTCTCTGTAAGCAACTaGGGATCATGGATTCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVLSVSN*GSWILC Trigger: ACAAAGAATCCATGATCCTCAGTTGCTTACAGAGAG...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGTTCTTGGGTCAGGCATaGTATAGAAAGGTCTTACAG | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVFLGQA*YRKVLQ Trigger: CTGTAAGACCTTTCTATACCATGCCTGACCCAAGAA...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGCTGTTTCGGATTTCTTaGGTCAGGCATGGTATAGAA | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVLFRIS*VRHGIE Trigger: TTCTATACCATGCCTGACCCAAGAAATCCGAAACAG...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGACATCATCAGCTTTTTaGACTGTCAGGTCCTTAACT | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVTSSAF*TVRSLT Trigger: AGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTTTGCTCTGCTTGTATaGACTCTTGCACGGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFFALLV*TLARTQ Trigger: TTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 40% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGACATTAAACTGCTGCTaGCTCAGGACTAAGAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLTLNCC*LRTKKH Trigger: GTGCTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGT...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGCTGCTTATACAATTGTaGAGACTGAGCAAGGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLLLIQL*RLSKVG Trigger: GCCTACCTTGCTCAGTCTCCACAATTGTATAAGCAG...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTGGGAACATTGAGGTCTaGCGTACGTTATGCAATCCT | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFGNIEV*RTLCNP Trigger: AGGATTGCATAACGTACGCCAGACCTCAATGTTCCC...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGTTCCAATTTTCTGATTaGCTTTCCTCACAACACCTT | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVFQFSD*LSSQHL Trigger: AAGGTGTTGTGAGGAAAGTCAATCAGAAAATTGGAA...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTGCTTCCCTTTTGCTCTaGTTGTATGAACTCTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFASLLL*LYELLH Trigger: GTGCAAGAGTTCATACAAGCAGAGCAAAAGGGAAGC...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTGCACTGCTTCCCTTTTaGTCTGCTTGTATGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFALLPF*SACMNS Trigger: AGAGTTCATACAAGCAGAGCAAAAGGGAAGCAGTGC...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTGCAAATTTAACCATCTaGTTGCTTGCATGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFANLTI*LLAWSP Trigger: GGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGC...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTGCAACTCAACATCCTaGTGGGTACAGCTTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFCNSTS*WVQLPI Trigger: AATTGGAAGCTGTACCCAGCAGGATGTTGAGTTGCA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGAGTCCTTTGAATATTTaGACCAAAGTGTCAGCAATC | + |
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Preference number: 4 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVSPLNI*TKVSAI Trigger: GATTGCTGACACTTTGGTGCAAATATTCAAAGGACT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGAACTCAACATCCTGCTaGGTACAGCTTCCAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLNSTSC*VQLPIF Trigger: GAAAATTGGAAGCTGTACCCAGCAGGATGTTGAGTT...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR TCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGTTTCTTCTCCTCTCATaGACATATCGTAAGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLFLLLS*TYRKSW Trigger: CCAACTCTTACGATATGTTCATGAGAGGAGAAGAAA...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTCTAATCTTGTATCCTaGTTAACCGTAGCTCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFSNLVS*LTVALP Trigger: CGGAAGAGCTACGGTTAACCAGGATACAAGATTAGA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTTTGAACGGCTCACATaGGAACTGTTTACTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFFERLT*ELFTHS Trigger: ACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 38% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTTCAGCTCTGAAAACTaGTCCAATGCAGAAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFFSSEN*SNAENL Trigger: AAGGTTTTCTGCATTGGACCAGTTTTCAGAGCTGAA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 37% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGTCCAAATCAATTCCATaGTGTAAAGCTCTCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: STAYFKYLRYNLINSRFLSKSIP*CKALSV Trigger: TACAGAGAGAGCTTTACACCATGGAATTGATTTGGA...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTACATATCGTAAGAGTTaGACTGTTTCGGATTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFTYRKS*TVSDFL Trigger: CAAGAAATCCGAAACAGTCCAACTCTTACGATATGT...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR GCA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTATCATGGATTCTTTGTaGTCCAGACAATATTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VTGSSQFQMLHRIFEITFIMDSL*SRQYFF Trigger: GAAGAAATATTGTCTGGAGCACAAAGAATCCATGAT...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 90 bp | GAATGGCATCATCCAGCTGCAAGGGCAGGCGAGGTTCAGCCAAGCTaGTCACATAAATCTTCTGGACATGCAACTCAACATCCTGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: EWHHPAARAGEVQPS*SHKSSGHATQHPAG Trigger: CCCAGCAGGATGTTGAGTTGCATGTCCAGAAGATTTATGTGATCAGCTTGGCTGAACCTCGCCTGCCCTTGCAGCTGGATGATGCCATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CCA 90 bp | TTAACCATCTGCTTGCTTGCATGGTCTCCCACCGCCACAAGAGCCTaGACATTAAACTGCTGCTGCCTCAGGACTAAGAAGCACTGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LTICLLAWSPTATRA*TLNCCCLRTKKHCF Trigger: GAAGCAGTGCTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 90 bp | AGTCGTTTGGGGTCACGAGGGAACATTGAGGTCTGGCGTACGTTATaGAATCCTAAAAACAGCATCGTCACCCTTTCCAGCCCAATGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SRLGSRGNIEVWRTL*NPKNSIVTLSSPMP Trigger: TGGCATTGGGCTGGAAAGGGTGACGATGCTGTTTTTAGGATTGCATAACGTACGCCAGACCTCAATGTTCCCTCGTGACCCCAAACGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CCA 90 bp | TCTTTGTTGATGTTGGCAGCAAATTTAACCATCTGCTTGCTTGCATaGTCTCCCACCGCCACAAGAGCCTGGACATTAAACTGCTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SLLMLAANLTICLLA*SPTATRAWTLNCCC Trigger: GCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 90 bp | ACGGTCGGTAGGTTCCCAGTCTTTTGCTCTGCTTGTATGAACTCTTaGACGGACCCAAACAACATCATCAGCTTTTTGAACTGTCAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: TVGRFPVFCSACMNS*TDPNNIISFLNCQV Trigger: GACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGACTGGGAACCTACCGACCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
||
| CDS-3UTR CAA 90 bp | CCTGATCTACATAGGGTTTCAGGCTACCATAACTGCACAGAAAGACCCTGCCTCAGTCTTTTGCTCTGCTaGTATGAACTCTTGCACGGA | + |
|
Preference number: 5 (lower is better) Translates to: PDLHRVSGYHNCTERPCLSLLLC*YELLHG Trigger: TCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGACT...GAGGCAGGGTCTTTCTGTGCAGTTATGGTAGCCTGAAACCCTATGTAGATCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
||
| CDS GCA 90 bp | ACTTTCTTTGTTGATGTTGGCAGCAAATTTAACCATCTGCTTGCTTaGATGGTCTCCCACCGCCACAAGAGCCTGGACATTAAACTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: TFFVDVGSKFNHLLA*MVSHRHKSLDIKLL Trigger: CAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CCA 90 bp | GTTGATGTCCTAAGGTCAATGACTCTGTTGTCTAATCTTGTATCCTaGTTAACCGTAGCTCTTCCGTCCTCTTCTCCTTCCACTTCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: VDVLRSMTLLSNLVS*LTVALPSSSPSTSG Trigger: GCCTGAAGTGGAAGGAGAAGAGGACGGAAGAGCTACGGTTAACCAGGATACAAGATTAGACAACAGAGTCATTGACCTTAGGACATCAAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGGTCACGAGGGAACATaGAGGTCTGGCGTACGTTAT | + |
|
Preference number: 5 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVGHEGT*RSGVRY Trigger: ATAACGTACGCCAGACCTCAATGTTCCCTCGTGACC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 90 bp | TCAATAATACTTTCTTTGTTGATGTTGGCAGCAAATTTAACCATCTaGTTGCTTGCATGGTCTCCCACCGCCACAAGAGCCTGGACATTA | + |
|
Preference number: 5 (lower is better) Translates to: SIILSLLMLAANLTI*LLAWSPTATRAWTL Trigger: TAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGAAAGTATTATTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGAATTTAACCATCTGCTaGCTTGCATGGTCTCCCACC | + |
|
Preference number: 5 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVNLTIC*LAWSPT Trigger: GGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGGACACAGTAAAAACATaGGCTCCTCCTTCACTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVDTVKT*APPSLA Trigger: TGCCAGTGAAGGAGGAGCCAATGTTTTTACTGTGTC...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 90 bp | CCAAAGCCTCGCAATACTCCAGTCTTAAAGTTGGCTCCAAAAATTTaGACGGCTCACATGGGAACTGTTTACTCACAGTTTGAATTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: PKPRNTPVLKLAPKI*TAHMGTVYSQFEFQ Trigger: CTGAAATTCAAACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAACTTTAAGACTGGAGTATTGCGAGGCTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGACTGTTTCGGATTTCTaGGGTCAGGCATGGTATAGA | + |
|
Preference number: 5 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVTVSDF*GQAWYR Trigger: TCTATACCATGCCTGACCCAAGAAATCCGAAACAGT...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 90 bp | GATCATGGATTCTTTGTGCTCCAGACAATATTTCTTCTCCTCTCATaGACATATCGTAAGAGTTGGACTGTTTCGGATTTCTTGGGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: DHGFFVLQTIFLLLS*TYRKSWTVSDFLGQ Trigger: CTGACCCAAGAAATCCGAAACAGTCCAACTCTTACGATATGTTCATGAGAGGAGAAGAAATATTGTCTGGAGCACAAAGAATCCATGATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | AGCTGTAAGTTTTTATTGAATCTCAGCCTCAGGACTGGTAACAATGTCTCAGTGCATCTGCTTATACAATaGTGGAGACTGAGCAAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: SCKFLLNLSLRTGNNVSVHLLIQ*WRLSKV Trigger: TACCTTGCTCAGTCTCCACAATTGTATAAGCAGATG...CACTGAGACATTGTTACCAGTCCTGAGGCTGAGATTCAATAAAAACTTACAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGGTTGGCTCCAAAAATTaGAACGGCTCACATGGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: STAYFKYLRYNLINSRFLVGSKN*NGSHGN Trigger: GTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAAC...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTTCCCTTTTGCTCTGCTaGTATGAACTCTTGCACGGA | + |
|
Preference number: 5 (lower is better) Translates to: VTGSSQFQMLHRIFEITFSLLLC*YELLHG Trigger: TCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGGGA...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTAGCACTGCTTCCCTTTaGCTCTGCTTGTATGAACTC | + |
|
Preference number: 5 (lower is better) Translates to: VTGSSQFQMLHRIFEITFSTASL*LCLYEL Trigger: GAGTTCATACAAGCAGAGCAAAAGGGAAGCAGTGCT...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CAA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGAGGTCAATGACTCTGTaGTCTAATCTTGTATCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: STAYFKYLRYNLINSRFLRSMTL*SNLVSW Trigger: CCAGGATACAAGATTAGACAACAGAGTCATTGACCT...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGAGATGTCTATGGGTATaGGAGTCTTCAGCTCTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: STAYFKYLRYNLINSRFLRCLWV*ESSALK Trigger: TTTCAGAGCTGAAGACTCCAATACCCATAGACATCT...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGCTTTCTTTGTTGATGTaGGCAGCAAATTTAACCATC | + |
|
Preference number: 5 (lower is better) Translates to: STAYFKYLRYNLINSRFLLSLLM*AANLTI Trigger: GATGGTTAAATTTGCTGCCAACATCAACAAAGAAAG...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS-3UTR CAA 90 bp | TCTACTGCATATTTTAAGTACCTCAGGTATAACCTAATCAATAGCAGGTTCCTGCCAACAGTTTTTCATTaGGTGTACTTAGATCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: STAYFKYLRYNLINSRFLPTVFH*VYLDLP Trigger: AGGAAGATCTAAGTACACCAAATGAAAAACTGTTGG...CAGGAACCTGCTATTGATTAGGTTATACCTGAGGTACTTAAAATATGCAGTAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTAGGATCATGGATTCTTaGTGCTCCAGACAATATTTC | + |
|
Preference number: 5 (lower is better) Translates to: VTGSSQFQMLHRIFEITFRIMDS*CSRQYF Trigger: GAAATATTGTCTGGAGCACAAAGAATCCATGATCCT...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS-3UTR CAA 90 bp | GTTACTGGTTCTAGCCAGTTTCAGATGCTTCACAGGATTTTTGAAATAACTTTTCTGTTTACTCACAGTTaGAATTTCAGTCTGAAACCT | + |
|
Preference number: 5 (lower is better) Translates to: VTGSSQFQMLHRIFEITFLFTHS*NFSLKP Trigger: AGGTTTCAGACTGAAATTCAAACTGTGAGTAAACAG...AAAAGTTATTTCAAAAATCCTGTGAAGCATCTGAAACTGGCTAGAACCAGTAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | TGGTCTCCCACCGCCACAAGAGCCTGGACATTAAACTaGTGCTGCCTCAGGACTAAGAAGCACTGCTTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: WSPTATRAWTLN*CCLRTKKHCFP Trigger: AGGGAAGCAGTGCTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS GCA 72 bp | ATCCTAAAAACAGCATCGTCACCCTTTCCAGCCCAATaGCACCACCAGCATGAGGAGGAGCTCCAAAGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: ILKTASSPFPAQ*HHQHEEELQSG Trigger: TCCGCTTTGGAGCTCCTCCTCATGCTGGTGGTGGCATTGGGCTGGAAAGGGTGACGATGCTGTTTTTAGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CCA 72 bp | TGCTTGCTTGCATGGTCTCCCACCGCCACAAGAGCCTaGACATTAAACTGCTGCTGCCTCAGGACTAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: CLLAWSPTATRA*TLNCCCLRTKK Trigger: CTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | TCTCCCACCGCCACAAGAGCCTGGACATTAAACTGCTaGTGCCTCAGGACTAAGAAGCACTGCTTCCCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: SPTATRAWTLNC*CLRTKKHCFPF Trigger: AAAAGGGAAGCAGTGCTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 72 bp | AGATGGCAGATGCCGGACTGGAGACGGAAGATGGCCTaGCTAGTTGATGTCCTAAGGTCAATGACTCTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: RWQMPDWRRKMA*LVDVLRSMTLL Trigger: CAACAGAGTCATTGACCTTAGGACATCAACTAGTCAGGCCATCTTCCGTCTCCAGTCCGGCATCTGCCATCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | GGGTCACGAGGGAACATTGAGGTCTGGCGTACGTTATaGAATCCTAAAAACAGCATCGTCACCCTTTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: GSRGNIEVWRTL*NPKNSIVTLSS Trigger: GCTGGAAAGGGTGACGATGCTGTTTTTAGGATTGCATAACGTACGCCAGACCTCAATGTTCCCTCGTGACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 72 bp | CATCCAGCTGCAAGGGCAGGCGAGGTTCAGCCAAGCTaGTCACATAAATCTTCTGGACATGCAACTCAACAT | + |
|
Preference number: 6 (lower is better) Translates to: HPAARAGEVQPS*SHKSSGHATQH Trigger: ATGTTGAGTTGCATGTCCAGAAGATTTATGTGATCAGCTTGGCTGAACCTCGCCTGCCCTTGCAGCTGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 72 bp | CGGTCGGTAGGTTCCCAGTCTTTTGCTCTGCTTGTATaGACTCTTGCACGGACCCAAACAACATCATCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RSVGSQSFALLV*TLARTQTTSSA Trigger: AGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGACTGGGAACCTACCGACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
||
| CDS GCA 72 bp | GTTGATGTTGGCAGCAAATTTAACCATCTGCTTGCTTaGATGGTCTCCCACCGCCACAAGAGCCTGGACATT | + |
|
Preference number: 6 (lower is better) Translates to: VDVGSKFNHLLA*MVSHRHKSLDI Trigger: AATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CCA 72 bp | GTGAGTCGTTTGGGGTCACGAGGGAACATTGAGGTCTaGCGTACGTTATGCAATCCTAAAAACAGCATCGTC | + |
|
Preference number: 6 (lower is better) Translates to: VSRLGSRGNIEV*RTLCNPKNSIV Trigger: GACGATGCTGTTTTTAGGATTGCATAACGTACGCCAGACCTCAATGTTCCCTCGTGACCCCAAACGACTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CAA 72 bp | TCTTTGTTGATGTTGGCAGCAAATTTAACCATCTGCTaGCTTGCATGGTCTCCCACCGCCACAAGAGCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SLLMLAANLTIC*LAWSPTATRAW Trigger: CCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | CTTTCTTTGTTGATGTTGGCAGCAAATTTAACCATCTaGTTGCTTGCATGGTCTCCCACCGCCACAAGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: LSLLMLAANLTI*LLAWSPTATRA Trigger: GGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | GAGAAAGAACAAACGGTCGGTAGGTTCCCAGTCTTTTaGTCTGCTTGTATGAACTCTTGCACGGACCCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: EKEQTVGRFPVF*SACMNSCTDPN Trigger: GTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGACTGGGAACCTACCGACCGTTTGTTCTTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
||
| CDS CCA 72 bp | ATGTTGGCAGCAAATTTAACCATCTGCTTGCTTGCATaGTCTCCCACCGCCACAAGAGCCTGGACATTAAAC | + |
|
Preference number: 6 (lower is better) Translates to: MLAANLTICLLA*SPTATRAWTLN Trigger: GTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 72 bp | ACTAAGAAGCACTGCTTCCCTTTTGCTCTGCTTGTATaGACTCTTGCACGGACCCAAACAACATCATCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: TKKHCFPFALLV*TLARTQTTSSA Trigger: AGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGGGAAGCAGTGCTTCTTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | GCACTGCTTCCCTTTTGCTCTGCTTGTATGAACTCTTaGACGGACCCAAACAACATCATCAGCTTTTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: ALLPFCSACMNS*TDPNNIISFLN Trigger: GTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGGGAAGCAGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS CCA 72 bp | CTAAGGTCAATGACTCTGTTGTCTAATCTTGTATCCTaGTTAACCGTAGCTCTTCCGTCCTCTTCTCCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LRSMTLLSNLVS*LTVALPSSSPS Trigger: GGAAGGAGAAGAGGACGGAAGAGCTACGGTTAACCAGGATACAAGATTAGACAACAGAGTCATTGACCTTAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS GCA 72 bp | AGGTTCCCAGTCTTTTGCTCTGCTTGTATGAACTCTTaGACGGACCCAAACAACATCATCAGCTTTTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: RFPVFCSACMNS*TDPNNIISFLN Trigger: GTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGAGCAAAAGACTGGGAACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064309.9 |
||
| CDS CAA 90 bp | GCTTGTATGAACTCTTGCACGGACCCAAACAACATCATCAGCTTTTaGAACTGTCAGGTCCTTAACTCGAACCAAAACTCTATCTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: ACMNSCTDPNNIISF*NCQVLNSNQNSIWL Trigger: AAGCCAGATAGAGTTTTGGTTCGAGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027602.15 ENSMUST00000064309.9 |
||
| CDS CAA 90 bp | ATAATACTTTCTTTGTTGATGTTGGCAGCAAATTTAACCATCTGCTaGCTTGCATGGTCTCCCACCGCCACAAGAGCCTGGACATTAAAC | + |
|
Preference number: 6 (lower is better) Translates to: IILSLLMLAANLTIC*LAWSPTATRAWTLN Trigger: GTTTAATGTCCAGGCTCTTGTGGCGGTGGGAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGAAAGTATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
||
| CDS TCA 72 bp | ACTCTTGCACGGACCCAAACAACATCATCAGCTTTTTaGACTGTCAGGTCCTTAACTCGAACCAAAACTCTA | + |
|
Preference number: 6 (lower is better) Translates to: TLARTQTTSSAF*TVRSLTRTKTL Trigger: TAGAGTTTTGGTTCGAGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027602.15 ENSMUST00000064309.9 |
||
| CDS CAA 72 bp | AACTCTTGCACGGACCCAAACAACATCATCAGCTTTTaGAACTGTCAGGTCCTTAACTCGAACCAAAACTCT | + |
|
Preference number: 6 (lower is better) Translates to: NSCTDPNNIISF*NCQVLNSNQNS Trigger: AGAGTTTTGGTTCGAGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027602.15 ENSMUST00000064309.9 |
||
| CDS TCA 72 bp | CGCAATACTCCAGTCTTAAAGTTGGCTCCAAAAATTTaGACGGCTCACATGGGAACTGTTTACTCACAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: RNTPVLKLAPKI*TAHMGTVYSQF Trigger: AAACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAACTTTAAGACTGGAGTATTGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CAA 72 bp | TCGCAATACTCCAGTCTTAAAGTTGGCTCCAAAAATTaGAACGGCTCACATGGGAACTGTTTACTCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: SQYSSLKVGSKN*NGSHGNCLLTV Trigger: AACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAACTTTAAGACTGGAGTATTGCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CAA 90 bp | CTGTATCATACTTTTCCTTCACCAAACGACCCAACAGTTTTTCATTaGGTGTACTTAGATCTTCCTCATCGTCCATTTCAACTCCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LYHTFPSPNDPTVFH*VYLDLPHRPFQLQL Trigger: AAGCTGGAGTTGAAATGGACGATGAGGAAGATCTAAGTACACCAAATGAAAAACTGTTGGGTCGTTTGGTGAAGGAAAAGTATGATACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CCA 72 bp | AAGAGTTGGACTGTTTCGGATTTCTTGGGTCAGGCATaGTATAGAAAGGTCTTACAGCCAATGGATATTTAT | + |
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Preference number: 6 (lower is better) Translates to: KSWTVSDFLGQA*YRKVLQPMDIY Trigger: ATAAATATCCATTGGCTGTAAGACCTTTCTATACCATGCCTGACCCAAGAAATCCGAAACAGTCCAACTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CAA 72 bp | TTTGAACGGCTCACATGGGAACTGTTTACTCACAGTTaGAATTTCAGTCTGAAACCTTTCTTGAAGTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: FERLTWELFTHS*NFSLKPFLKSF Trigger: AAAGGACTTCAAGAAAGGTTTCAGACTGAAATTCAAACTGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CAA 72 bp | ACTTTTCCTTCACCAAACGACCCAACAGTTTTTCATTaGGTGTACTTAGATCTTCCTCATCGTCCATTTCAA | + |
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Preference number: 6 (lower is better) Translates to: TFPSPNDPTVFH*VYLDLPHRPFQ Trigger: TTGAAATGGACGATGAGGAAGATCTAAGTACACCAAATGAAAAACTGTTGGGTCGTTTGGTGAAGGAAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS CAA 90 bp | AGTTTGAATTTCAGTCTGAAACCTTTCTTGAAGTCCTTTGAATATTaGCACCAAAGTGTCAGCAATCTCTTCTACAACTTCATGGTAATG | + |
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Preference number: 6 (lower is better) Translates to: SLNFSLKPFLKSFEY*HQSVSNLFYNFMVM Trigger: CATTACCATGAAGTTGTAGAAGAGATTGCTGACACTTTGGTGCAAATATTCAAAGGACTTCAAGAAAGGTTTCAGACTGAAATTCAAACT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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| CDS TCA 72 bp | TTTGAATTTCAGTCTGAAACCTTTCTTGAAGTCCTTTaGATATTTGCACCAAAGTGTCAGCAATCTCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: FEFQSETFLEVL*IFAPKCQQSLL Trigger: TAGAAGAGATTGCTGACACTTTGGTGCAAATATTCAAAGGACTTCAAGAAAGGTTTCAGACTGAAATTCAAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027602.15 |
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