Pregenerated sensors for DAPL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026989Ensembl transcript IDs: ENSMUST00000028369.6
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATTGACCGGAGAGTTGACCAGGTaGCTGTGTTTTCTGTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: KSWFIYQARAAGLQEVLTGELTR*LCFLSW Trigger: CCAGGACAGAAAACACAGCCACCTGGTCAACTCTCC...GGTCAATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CCA 90 bp | AAGGGAAGATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGTCTCCAGAGCGGGTGTaGGCTTTTGATGTGCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: KGRYKSWFIYQARAAGLQSPERV*AFDVPC Trigger: ACACGGCACATCAAAAGCCCACACCCGCTCTGGAGA...CTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTATCTTCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CCA 90 bp | ATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATTGTAGGCCCTCTTCATTaGAGCAGCCTTCTCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: IQKLVYLPSKGSRPTGSIVGPLH*SSLLQS Trigger: GCTCTGGAGAAGGCTGCTCCAATGAAGAGGGCCTAC...AATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CCA 90 bp | GATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATGTCGCTGGAAATTTATaGTTGAGCTTGTCCAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: DTKVGLFTKQGQQAYRKYVAGNL*LSLSSV Trigger: CACACTGGACAAGCTCAACCATAAATTTCCAGCGAC...ATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS CCA 90 bp | CTCCAGAGCGGGTGTGGGCTTTTGATGTGCCGTGTGAACTGTCGCTaGAAATTTATGGTTGAGCTTGTCCAGTGTGTCCGTCAGAGCATC | + |
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Preference number: 5 (lower is better) Translates to: LQSGCGLLMCRVNCR*KFMVELVQCVRQSI Trigger: GATGCTCTGACGGACACACTGGACAAGCTCAACCATAAATTTCCAGCGACAGTTCACACGGCACATCAAAAGCCCACACCCGCTCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | AAGATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTTGTAGGCCCTCTTCATaGGAGCAGCCTTCTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: KIQKLVYLPSKGSRPTGSCRPSS*EQPSPE Trigger: CTCTGGAGAAGGCTGCTCCAATGAAGAGGGCCTACA...ACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS TCA 90 bp | GTGTGTCCGTCAGAGCATCCAACATCTGTATCTTGGCGACATTTGTaGTGGCACTTGTTTTCTCCAAGCCTGTCTTTTTCGTGTGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: VCPSEHPTSVSWRHL*WHLFSPSLSFSCVF Trigger: AAAGACACACGAAAAAGACAGGCTTGGAGAAAACAAGTGCCATCACAAATGTCGCCAAGATACAGATGTTGGATGCTCTGACGGACACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | TGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATTGACCTTTTCTGCTGGAAATTTATGGTaGAGCTTGTCCAGTGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: WFIYQARAAGLQEVLTFSAGNLW*SLSSVS Trigger: GGACACACTGGACAAGCTCAACCATAAATTTCCAGC...AGAAAAGGTCAATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | GATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATCCCATCTCTTGTTTTTaGGAGATTCGCATCCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: DTKVGLFTKQGQQAYRKYPISCF*EIRIPP Trigger: TGGAGGGATGCGAATCTCCAAAAAACAAGAGATGGG...ATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | AAGGGAAGATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGAATTTATGGTTGAGCTaGTCCAGTGTGTCCGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: KGRYKSWFIYQARAAGLQNLWLS*SSVSVR Trigger: TCTGACGGACACACTGGACAAGCTCAACCATAAATT...CTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTATCTTCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | TGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATTGACCTTTTCTCTAACATTTTCGAGGTaGCTGAATAATGTAGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: WFIYQARAAGLQEVLTFSLTFSR*LNNVGP Trigger: AGGGCCTACATTATTCAGCAACCTCGAAAATGTTAG...AGAAAAGGTCAATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS-3UTR CAA 90 bp | ATACAAAAGTTGGTTTATTTACCAAGCAAGGGCAGCAGGCCTACAGGAAGTATTTCCAACATCTGTATCTaGGCGACATTTGTGATGGCA | + |
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Preference number: 5 (lower is better) Translates to: IQKLVYLPSKGSRPTGSISNICI*ATFVMA Trigger: TGCCATCACAAATGTCGCCAAGATACAGATGTTGGA...AATACTTCCTGTAGGCCTGCTGCCCTTGCTTGGTAAATAAACCAACTTTTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS CCA 72 bp | CCCTCTTCATTGGAGCAGCCTTCTCCAGAGCGGGTGTaGGCTTTTGATGTGCCGTGTGAACTGTCGCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: PSSLEQPSPERV*AFDVPCELSLE Trigger: TTCCAGCGACAGTTCACACGGCACATCAAAAGCCCACACCCGCTCTGGAGAAGGCTGCTCCAATGAAGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS CCA 72 bp | GGGTGTGGGCTTTTGATGTGCCGTGTGAACTGTCGCTaGAAATTTATGGTTGAGCTTGTCCAGTGTGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: GCGLLMCRVNCR*KFMVELVQCVR Trigger: ACGGACACACTGGACAAGCTCAACCATAAATTTCCAGCGACAGTTCACACGGCACATCAAAAGCCCACACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS CCA 72 bp | TTTTCGAGGTTGCTGAATAATGTAGGCCCTCTTCATTaGAGCAGCCTTCTCCAGAGCGGGTGTGGGCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: FSRLLNNVGPLH*SSLLQSGCGLL Trigger: CAAAAGCCCACACCCGCTCTGGAGAAGGCTGCTCCAATGAAGAGGGCCTACATTATTCAGCAACCTCGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS TCA 72 bp | GATGTGCCGTGTGAACTGTCGCTGGAAATTTATGGTTaGGCTTGTCCAGTGTGTCCGTCAGAGCATCCAACA | + |
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Preference number: 6 (lower is better) Translates to: DVPCELSLEIYG*ACPVCPSEHPT Trigger: TGTTGGATGCTCTGACGGACACACTGGACAAGCTCAACCATAAATTTCCAGCGACAGTTCACACGGCACATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS CAA 72 bp | TTCGTGTGTCTTTCCAAAACGCCCATCTCTTGTTTTTaGGAGATTCGCATCCCTCCAGCTTTCACTGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: FVCLSKTPISCF*EIRIPPAFTAG Trigger: CCCAGCAGTGAAAGCTGGAGGGATGCGAATCTCCAAAAAACAAGAGATGGGCGTTTTGGAAAGACACACGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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| CDS TCA 72 bp | TCAGAGCATCCAACATCTGTATCTTGGCGACATTTGTaGTGGCACTTGTTTTCTCCAAGCCTGTCTTTTTCG | + |
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Preference number: 6 (lower is better) Translates to: SEHPTSVSWRHL*WHLFSPSLSFS Trigger: CGAAAAAGACAGGCTTGGAGAAAACAAGTGCCATCACAAATGTCGCCAAGATACAGATGTTGGATGCTCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028369.6 |
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