RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DAP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068921

Ensembl transcript IDs: ENSMUST00000090938.11, ENSMUST00000107491.11, ENSMUST00000172942.8, ENSMUST00000173021.8, ENSMUST00000173094.8, ENSMUST00000173135.8, ENSMUST00000174077.8, ENSMUST00000174402.8, ENSMUST00000174491.2, ENSMUST00000174571.8

Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCACGGTAGCTaGAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCCGTGC +
Preference number: 1 (lower is better)
Translates to: CSAWNLGTSSCAHGS*RKPVFPACHRRCPC
Trigger: GCACGGACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
3UTR GCA 90 bp CTCTCATGGCATGGACGACGTGGCAAGGGGCTGGCCACACCATCCTaGCAGAACTCAGCTGGAGCTTCAGCGATGTTCCACGGAATCAAA +
Preference number: 1 (lower is better)
Translates to: LSWHGRRGKGLATPS*QNSAGASAMFHGIK
Trigger: TTTGATTCCGTGGAACATCGCTGAAGCTCCAGCTGAGTTCTGGCAGGATGGTGTGGCCAGCCCCTTGCCACGTCGTCCATGCCATGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 90 bp CTTCTGGCATTCCTCCTTGTCCCTCCTGCTGACTCATGCCAAGGTTaGGGCCTGGCTGTCTCTGTAGGTAGTGCCACCACTGCTGATTTG +
Preference number: 1 (lower is better)
Translates to: LLAFLLVPPADSCQG*GLAVSVGSATTADL
Trigger: CAAATCAGCAGTGGTGGCACTACCTACAGAGACAGCCAGGCCTCAACCTTGGCATGAGTCAGCAGGAGGGACAAGGAGGAATGCCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 90 bp CAGCAGCCTGGGTGTGGTAGCTTCCTGGGGCCAATGAGATGGTGGTaGCATTTGCCATCTGCAAGCCTGACAATGAACACAGAAGGAGAG +
Preference number: 1 (lower is better)
Translates to: QQPGCGSFLGPMRWW*HLPSASLTMNTEGE
Trigger: CTCTCCTTCTGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGGAAGCTACCACACCCAGGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 90 bp CATTGGCCCAGCAGAGGCAGGTCCCTAGGATGCATCCCAGTACTGTaGGATACTGTTTCACTAACAGCCTTTGCAGTTGTGGGAGTTGGT +
Preference number: 1 (lower is better)
Translates to: HWPSRGRSLGCIPVL*DTVSLTAFAVVGVG
Trigger: ACCAACTCCCACAACTGCAAAGGCTGTTAGTGAAACAGTATCCCACAGTACTGGGATGCATCCTAGGGACCTGCCTCTGCTGGGCCAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 90 bp GCCAGCAAACAGAACACCAGAGAAACTGACAGAGTCTGGCCAGGGTaGGAACCTTCCTTGTTGCAAATCCAATACAGCACTCAGGAGCAG +
Preference number: 1 (lower is better)
Translates to: ASKQNTRETDRVWPG*EPSLLQIQYSTQEQ
Trigger: CTGCTCCTGAGTGCTGTATTGGATTTGCAACAAGGAAGGTTCTCACCCTGGCCAGACTCTGTCAGTTTCTCTGGTGTTCTGTTTGCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 90 bp ATCAGTGCTCAATATGGAAGCAGAAGCCCCAGGAGACACATACAATaGCTTGTAGGATGGGGTTGTAGCTCAGTGGAGAGCCAACATTGG +
Preference number: 1 (lower is better)
Translates to: ISAQYGSRSPRRHIQ*LVGWGCSSVESQHW
Trigger: CCAATGTTGGCTCTCCACTGAGCTACAACCCCATCCTACAAGTCATTGTATGTGTCTCCTGGGGCTTCTGCTTCCATATTGAGCACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 90 bp GAACTGAGTTTCTTCAGATGCCAGCAAACAGAACACCAGAGAAACTaGCAGAGTCTGGCCAGGGTGAGAACCTTCCTTGTTGCAAATCCA +
Preference number: 1 (lower is better)
Translates to: ELSFFRCQQTEHQRN*QSLARVRTFLVANP
Trigger: TGGATTTGCAACAAGGAAGGTTCTCACCCTGGCCAGACTCTGTCAGTTTCTCTGGTGTTCTGTTTGCTGGCATCTGAAGAAACTCAGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 90 bp AGACCATGGACGTCAGTCTTTGGCTTCACACACAAGGCATCCTACTaGTGTAGTAAACCTCCCCAAACTAAGCAAAGTAAAAGGTCTGTG +
Preference number: 1 (lower is better)
Translates to: RPWTSVFGFTHKASY*CSKPPQTKQSKRSV
Trigger: CACAGACCTTTTACTTTGCTTAGTTTGGGGAGGTTTACTACAGCAGTAGGATGCCTTGTGTGTGAAGCCAAAGACTGACGTCCATGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 90 bp AAGAGAAGCCAAGAGCTAGTACATGAGAAATGTGGAAATGGGATCTaGATTCTCACTGGGCATGGCACCTCTAACTACCCTAAGCACCTA +
Preference number: 1 (lower is better)
Translates to: KRSQELVHEKCGNGI*ILTGHGTSNYPKHL
Trigger: TAGGTGCTTAGGGTAGTTAGAGGTGCCATGCCCAGTGAGAATCCAGATCCCATTTCCACATTTCTCATGTACTAGCTCTTGGCTTCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 90 bp AAACACCCAGAAATGCCATTCTTGATTAGGACTGGGTGGTACCAGTaGGAGCCTTACAATGTGATGAGCTTCCCAAAGGCACAAGGTATA +
Preference number: 1 (lower is better)
Translates to: KHPEMPFLIRTGWYQ*EPYNVMSFPKAQGI
Trigger: TATACCTTGTGCCTTTGGGAAGCTCATCACATTGTAAGGCTCTCACTGGTACCACCCAGTCCTAATCAAGAATGGCATTTCTGGGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 90 bp AAAGGACATGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTaGTCTGCCTTACACTGTGTAGCTGAGCTGCATTTGTCAGGACTC +
Preference number: 1 (lower is better)
Translates to: KGHVMKDLLLIMPMY*SALHCVAELHLSGL
Trigger: GAGTCCTGACAAATGCAGCTCAGCTACACAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACATGTCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CAA 90 bp CCTGGGTGTGGTAGCTTCCTGGGGCCAATGAGATGGTGGTGGCATTaGCCATCTGCAAGCCTGACAATGAACACAGAAGGAGAGGGCTCA +
Preference number: 2 (lower is better)
Translates to: PGCGSFLGPMRWWWH*PSASLTMNTEGEGS
Trigger: TGAGCCCTCTCCTTCTGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGGAAGCTACCACACCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp GCTGTAGAGCAAGCTAGCCTGAAATTAGAGATTGAGTGGCCTCTGCCTACCAAGCCAGCAGAGAGTGACTaGGGAAGACCATGGACGTCA +
Preference number: 2 (lower is better)
Translates to: AVEQASLKLEIEWPLPTKPAESD*GRPWTS
Trigger: TGACGTCCATGGTCTTCCTCAGTCACTCTCTGCTGG...CTTGGTAGGCAGAGGCCACTCAATCTCTAATTTCAGGCTAGCTTGCTCTACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp GCAGTTGTGGGAGTTGGTCCTGAATCTGATGTGAGTGATCTCTTGTTGAACCCAGAACACCAGAGAAACTaGCAGAGTCTGGCCAGGGTG +
Preference number: 2 (lower is better)
Translates to: AVVGVGPESDVSDLLLNPEHQRN*QSLARV
Trigger: CACCCTGGCCAGACTCTGTCAGTTTCTCTGGTGTTC...TGGGTTCAACAAGAGATCACTCACATCAGATTCAGGACCAACTCCCACAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR GCA 90 bp TGTGATAGCTCAGCACAGCACTCTCTAGTGTACAGAGGTACAGAGCCTGAGGCAGTGGCATTTGCCATCTaGAAGCCTGACAATGAACAC +
Preference number: 2 (lower is better)
Translates to: CDSSAQHSLVYRGTEPEAVAFAI*KPDNEH
Trigger: GTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCAC...TGCCTCAGGCTCTGTACCTCTGTACACTAGAGAGTGCTGTGCTGAGCTATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR GCA 90 bp AGCCCTGTGGACTCAGATCCCTTGCAGTCAGGTAAACGCCAGGCACCACGGTCTAATGAGGCTACTTTTTaGTTTGAGACCGTTTTCTTC +
Preference number: 2 (lower is better)
Translates to: SPVDSDPLQSGKRQAPRSNEATF*FETVFF
Trigger: GAAGAAAACGGTCTCAAAGCAAAAAGTAGCCTCATT...AGACCGTGGTGCCTGGCGTTTACCTGACTGCAAGGGATCTGAGTCCACAGGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CCA 90 bp CATGATAATGCCAACACTCAGGAGGCTGAGGCAGGACTGGGAAGTCAGTGCAGCAGGATAACATCATGGTaGGTGTTCAGGTTTTCACAG +
Preference number: 2 (lower is better)
Translates to: HDNANTQEAEAGLGSQCSRITSW*VFRFSQ
Trigger: CTGTGAAAACCTGAACACCCACCATGATGTTATCCT...GCTGCACTGACTTCCCAGTCCTGCCTCAGCCTCCTGAGTGTTGGCATTATCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGCAGCAGAAGGCTTACTaGCCCACACCAGGGCCTGTC +
Preference number: 2 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLQQKAY*PTPGPV
Trigger: GACAGGCCCTGGTGTGGGTCAGTAAGCCTTCTGCTG...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGCAGAGGTACAGAGCCTaGGGCAATGCCTTCATGGCC +
Preference number: 2 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLQRYRA*GNAFMA
Trigger: GGCCATGAAGGCATTGCCTCAGGCTCTGTACCTCTG...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp AGGCATCCTACTGCTGTAGTAAACCTCCCCAAACTAAGCAAAGTAAAAGGTCTGGTTACACCGTTGTCCTaGCCTCTGGATGTGTGCAAA +
Preference number: 2 (lower is better)
Translates to: RHPTAVVNLPKLSKVKGLVTPLS*PLDVCK
Trigger: TTTGCACACATCCAGAGGTCAGGACAACGGTGTAAC...CAGACCTTTTACTTTGCTTAGTTTGGGGAGGTTTACTACAGCAGTAGGATGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp GCTGTAGAGCAAGCTAGCCTGAAATTAGAGATTGAGTGGCCTCTGCCTACCAAGGGCTACTTTTTGCTTTaGGACCGTTTTCTTCAGTTC +
Preference number: 2 (lower is better)
Translates to: AVEQASLKLEIEWPLPTKGYFLL*DRFLQF
Trigger: GAACTGAAGAAAACGGTCTCAAAGCAAAAAGTAGCC...CTTGGTAGGCAGAGGCCACTCAATCTCTAATTTCAGGCTAGCTTGCTCTACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CCA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGTGTGCTGTGAGCTTCTaGCATTCCTCCTTGTCCCTC +
Preference number: 2 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLCAVSF*HSSLSL
Trigger: GAGGGACAAGGAGGAATGCCAGAAGCTCACAGCACA...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp ATTAATACAACTGATAGTGAAGCCCTGTGGACTCAGATCCCTTGCAGTCAGGTACCAAGAGCTAGTACATaGGAAATGTGGAAATGGGAT +
Preference number: 2 (lower is better)
Translates to: INTTDSEALWTQIPCSQVPRAST*EMWKWD
Trigger: ATCCCATTTCCACATTTCTCATGTACTAGCTCTTGG...TACCTGACTGCAAGGGATCTGAGTCCACAGGGCTTCACTATCAGTTGTATTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR GCA 90 bp CAAGAGCTAGTACATGAGAAATGTGGAAATGGGATCTGGATTCTCACTGGGCATGAGAACCTTCCTTGTTaGAAATCCAATACAGCACTC +
Preference number: 2 (lower is better)
Translates to: QELVHEKCGNGIWILTGHENLPC*KSNTAL
Trigger: GAGTGCTGTATTGGATTTGCAACAAGGAAGGTTCTC...ATGCCCAGTGAGAATCCAGATCCCATTTCCACATTTCTCATGTACTAGCTCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR TCA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGAGGAGACACATACAATaGCTTGTAGGATGGGGTTGT +
Preference number: 2 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLRRHIQ*LVGWGC
Trigger: ACAACCCCATCCTACAAGTCATTGTATGTGTCTCCT...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp CATGGACGACGTGGCAAGGGGCTGGCCACACCATCCTaGCAGAACTCAGCTGGAGCTTCAGCGATGTTCCAC +
Preference number: 3 (lower is better)
Translates to: HGRRGKGLATPS*QNSAGASAMFH
Trigger: GTGGAACATCGCTGAAGCTCCAGCTGAGTTCTGGCAGGATGGTGTGGCCAGCCCCTTGCCACGTCGTCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp GTAGGATGGGGTTGTAGCTCAGTGGAGAGCCAACATTaGCCCAGCAGAGGCAGGTCCCTAGGATGCATCCCA +
Preference number: 3 (lower is better)
Translates to: VGWGCSSVESQH*PSRGRSLGCIP
Trigger: TGGGATGCATCCTAGGGACCTGCCTCTGCTGGGCCAATGTTGGCTCTCCACTGAGCTACAACCCCATCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp CAGCCTGGCCCACCTCAGAAGTACCTGAGCTCCTACTaGCAGTACAGCAGAAGGCTTACTGACCCACACCAG +
Preference number: 3 (lower is better)
Translates to: QPGPPQKYLSSY*QYSRRLTDPHQ
Trigger: CTGGTGTGGGTCAGTAAGCCTTCTGCTGTACTGTCAGTAGGAGCTCAGGTACTTCTGAGGTGGGCCAGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp CAGCCTGGGTGTGGTAGCTTCCTGGGGCCAATGAGATaGTGGTGGCATTTGCCATCTGCAAGCCTGACAATG +
Preference number: 3 (lower is better)
Translates to: QPGCGSFLGPMR*WWHLPSASLTM
Trigger: CATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGGAAGCTACCACACCCAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp CCTGGGGCCAATGAGATGGTGGTGGCATTTGCCATCTaGAAGCCTGACAATGAACACAGAAGGAGAGGGCTC +
Preference number: 3 (lower is better)
Translates to: PGANEMVVAFAI*KPDNEHRRRGL
Trigger: GAGCCCTCTCCTTCTGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp CAAGGGGCTGGCCACACCATCCTGCCAGAACTCAGCTaGAGCTTCAGCGATGTTCCACGGAATCAAAGTACA +
Preference number: 3 (lower is better)
Translates to: QGAGHTILPELS*SFSDVPRNQST
Trigger: TGTACTTTGATTCCGTGGAACATCGCTGAAGCTCCAGCTGAGTTCTGGCAGGATGGTGTGGCCAGCCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp GTAGTGTCAATGCACTATACATCATGGGTGCTCTCATaGCATGGACGACGTGGCAAGGGGCTGGCCACACCA +
Preference number: 3 (lower is better)
Translates to: VVSMHYTSWVLS*HGRRGKGLATP
Trigger: TGGTGTGGCCAGCCCCTTGCCACGTCGTCCATGCCATGAGAGCACCCATGATGTATAGTGCATTGACACTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp ATGATAATGCCAACACTCAGGAGGCTGAGGCAGGACTaGGAAGTCAGTGCAGCCTGGCCCACCTCAGAAGTA +
Preference number: 3 (lower is better)
Translates to: MIMPTLRRLRQD*EVSAAWPTSEV
Trigger: TACTTCTGAGGTGGGCCAGGCTGCACTGACTTCCCAGTCCTGCCTCAGCCTCCTGAGTGTTGGCATTATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp AGCACAGCACTCTCTAGTGTACAGAGGTACAGAGCCTaGGGCAATGCCTTCATGGCCATGCTGTGCTACTGG +
Preference number: 3 (lower is better)
Translates to: STALSSVQRYRA*GNAFMAMLCYW
Trigger: CCAGTAGCACAGCATGGCCATGAAGGCATTGCCTCAGGCTCTGTACCTCTGTACACTAGAGAGTGCTGTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp CGGGCTGACTGGCAGAGTGATGACAGCTGCACGTGCTaGAGCAATACTCATGAAGGACGCACGATGTTTGGA +
Preference number: 3 (lower is better)
Translates to: RADWQSDDSCTC*SNTHEGRTMFG
Trigger: TCCAAACATCGTGCGTCCTTCATGAGTATTGCTTCAGCACGTGCAGCTGTCATCACTCTGCCAGTCAGCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp CCAGAGAGAAATGAATCAAAACTTCTGGTGGTGTGCTaGGGTTTCTTGCCGCTACCGTGGACTCGGGCTGAC +
Preference number: 3 (lower is better)
Translates to: PERNESKLLVVC*GFLPLPWTRAD
Trigger: GTCAGCCCGAGTCCACGGTAGCGGCAAGAAACCGCAGCACACCACCAGAAGTTTTGATTCATTTCTCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp ACAACTGATAGTGAAGCCCTGTGGACTCAGATCCCTTaGAGTCAGGTAAACGCCAGGCACCACGGTCTGTCA +
Preference number: 3 (lower is better)
Translates to: TTDSEALWTQIP*SQVNARHHGLS
Trigger: TGACAGACCGTGGTGCCTGGCGTTTACCTGACTGCAAGGGATCTGAGTCCACAGGGCTTCACTATCAGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp GGGTGTGGTAGCTTCCTGGGGCCAATGAGATGGTGGTaGCATTTGCCATCTGCAAGCCTGACAATGAACACA +
Preference number: 3 (lower is better)
Translates to: GCGSFLGPMRWW*HLPSASLTMNT
Trigger: TGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGGAAGCTACCACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp AGCCAACATTGGCCCAGCAGAGGCAGGTCCCTAGGATaGATCCCAGTACTGTGGGATACTGTTTCACTAACA +
Preference number: 3 (lower is better)
Translates to: SQHWPSRGRSLG*IPVLWDTVSLT
Trigger: TGTTAGTGAAACAGTATCCCACAGTACTGGGATGCATCCTAGGGACCTGCCTCTGCTGGGCCAATGTTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp TGCTACGAAAGTAGGTGGAAGAGCTTGCGAACTCACTaGCCAGCTAGCCAGGCTGCAGTCAACAAAATCTGC +
Preference number: 3 (lower is better)
Translates to: CYESRWKSLRTH*PASQAAVNKIC
Trigger: GCAGATTTTGTTGACTGCAGCCTGGCTAGCTGGCCAGTGAGTTCGCAAGCTCTTCCACCTACTTTCGTAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp AGCAGAGGCAGGTCCCTAGGATGCATCCCAGTACTGTaGGATACTGTTTCACTAACAGCCTTTGCAGTTGTG +
Preference number: 3 (lower is better)
Translates to: SRGRSLGCIPVL*DTVSLTAFAVV
Trigger: CACAACTGCAAAGGCTGTTAGTGAAACAGTATCCCACAGTACTGGGATGCATCCTAGGGACCTGCCTCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp TCTGTAGGTAGTGCCACCACTGCTGATTTGAACTGCTaGTGTACCTGTGAAGTGTTTGGGAGTGGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: SVGSATTADLNC*CTCEVFGSGAS
Trigger: GCTTGCTCCACTCCCAAACACTTCACAGGTACACCAGCAGTTCAAATCAGCAGTGGTGGCACTACCTACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CAA 90 bp CAAGAGCTAGTACATGAGAAATGTGGAAATGGGATCTGGATTCTCACTGGGCATGTTCAGCTTGGAACCTaGGGACTTCCTCATGCGCGC +
Preference number: 3 (lower is better)
Translates to: QELVHEKCGNGIWILTGHVQLGT*GLPHAR
Trigger: GCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAAC...ATGCCCAGTGAGAATCCAGATCCCATTTCCACATTTCTCATGTACTAGCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp CAATATGGAAGCAGAAGCCCCAGGAGACACATACAATaGCTTGTAGGATGGGGTTGTAGCTCAGTGGAGAGC +
Preference number: 3 (lower is better)
Translates to: QYGSRSPRRHIQ*LVGWGCSSVES
Trigger: GCTCTCCACTGAGCTACAACCCCATCCTACAAGTCATTGTATGTGTCTCCTGGGGCTTCTGCTTCCATATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp CTGACAGAGTCTGGCCAGGGTGAGAACCTTCCTTGTTaGAAATCCAATACAGCACTCAGGAGCAGATCTACT +
Preference number: 3 (lower is better)
Translates to: LTESGQGENLPC*KSNTALRSRST
Trigger: AGTAGATCTGCTCCTGAGTGCTGTATTGGATTTGCAACAAGGAAGGTTCTCACCCTGGCCAGACTCTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp CAGAACACCAGAGAAACTGACAGAGTCTGGCCAGGGTaGGAACCTTCCTTGTTGCAAATCCAATACAGCACT +
Preference number: 3 (lower is better)
Translates to: QNTRETDRVWPG*EPSLLQIQYST
Trigger: AGTGCTGTATTGGATTTGCAACAAGGAAGGTTCTCACCCTGGCCAGACTCTGTCAGTTTCTCTGGTGTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp TGCCAGCACACTAAGTTCTGGTCAGTCTGGGCTACATaGGGTTTGGTTTCAGAAAAGAAAGCAAACCCACGG +
Preference number: 3 (lower is better)
Translates to: CQHTKFWSVWAT*GLVSEKKANPR
Trigger: CCGTGGGTTTGCTTTCTTTTCTGAAACCAAACCTCATGTAGCCCAGACTGACCAGAACTTAGTGTGCTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp ACACTAAGTTCTGGTCAGTCTGGGCTACATGAGGTTTaGTTTCAGAAAAGAAAGCAAACCCACGGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: TLSSGQSGLHEV*FQKRKQTHGSS
Trigger: GCTGCTGCCGTGGGTTTGCTTTCTTTTCTGAAACCAAACCTCATGTAGCCCAGACTGACCAGAACTTAGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CAA 90 bp GCTGTAGAGCAAGCTAGCCTGAAATTAGAGATTGAGTGGCCTCTGCCTACCAAGCAACACTTCTGTGTCTaGAATCTTTGTGCCCTAAGA +
Preference number: 3 (lower is better)
Translates to: AVEQASLKLEIEWPLPTKQHFCV*NLCALR
Trigger: TCTTAGGGCACAAAGATTCAAGACACAGAAGTGTTG...CTTGGTAGGCAGAGGCCACTCAATCTCTAATTTCAGGCTAGCTTGCTCTACAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp GTGTACAGAGGTACAGAGCCTGAGGCAATGCCTTCATaGCCATGCTGTGCTACTGGCTTTGTTTCAAATTAT +
Preference number: 3 (lower is better)
Translates to: VYRGTEPEAMPS*PCCATGFVSNY
Trigger: ATAATTTGAAACAAAGCCAGTAGCACAGCATGGCCATGAAGGCATTGCCTCAGGCTCTGTACCTCTGTACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp AATGCCCATGTATTGGTCTGCCTTACACTGTGTAGCTaGGCTGCATTTGTCAGGACTCCAGAGAGAAATGAA +
Preference number: 3 (lower is better)
Translates to: NAHVLVCLTLCS*AAFVRTPERNE
Trigger: TTCATTTCTCTCTGGAGTCCTGACAAATGCAGCTCAGCTACACAGTGTAAGGCAGACCAATACATGGGCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CAA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGGTAGCTGAGCTGCATTaGTCAGGACTCCAGAGAGAA +
Preference number: 3 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLVAELH*SGLQRE
Trigger: TTCTCTCTGGAGTCCTGACAAATGCAGCTCAGCTAC...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp AGAGGTACAGAGCCTGAGGCAATGCCTTCATGGCCATaGTGTGCTACTGGCTTTGTTTCAAATTATGAATTA +
Preference number: 3 (lower is better)
Translates to: RGTEPEAMPSWP*CATGFVSNYEL
Trigger: TAATTCATAATTTGAAACAAAGCCAGTAGCACAGCATGGCCATGAAGGCATTGCCTCAGGCTCTGTACCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR GCA 72 bp ACGTCAGTCTTTGGCTTCACACACAAGGCATCCTACTaGTGTAGTAAACCTCCCCAAACTAAGCAAAGTAAA +
Preference number: 3 (lower is better)
Translates to: TSVFGFTHKASY*CSKPPQTKQSK
Trigger: TTTACTTTGCTTAGTTTGGGGAGGTTTACTACAGCAGTAGGATGCCTTGTGTGTGAAGCCAAAGACTGACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp AAGGAGAGGGCTCAGTTACACCGTTGTCCTGACCTCTaGATGTGTGCAAACAATGATACAAGAGTAAAAAGT +
Preference number: 3 (lower is better)
Translates to: KERAQLHRCPDL*MCANNDTRVKS
Trigger: ACTTTTTACTCTTGTATCATTGTTTGCACACATCCAGAGGTCAGGACAACGGTGTAACTGAGCCCTCTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp AGCGATGTTCCACGGAATCAAAGTACAAACAGGAATTaGGAAGCGTTACCTGTCTTATTAGGAATTCGGCTG +
Preference number: 3 (lower is better)
Translates to: SDVPRNQSTNRN*EALPVLLGIRL
Trigger: CAGCCGAATTCCTAATAAGACAGGTAACGCTTCTCAATTCCTGTTTGTACTTTGATTCCGTGGAACATCGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR TCA 72 bp CCTAACAGTTTAGCATCATTGTACCACCAGGCAAGGTaGAACAAGAGAAGCCAAGAGCTAGTACATGAGAAA +
Preference number: 3 (lower is better)
Translates to: PNSLASLYHQAR*NKRSQELVHEK
Trigger: TTTCTCATGTACTAGCTCTTGGCTTCTCTTGTTTCACCTTGCCTGGTGGTACAATGATGCTAAACTGTTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CCA 72 bp GTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTaGTCTGCCTTACACTGTGTAGCTGAGCTGCATTTG +
Preference number: 3 (lower is better)
Translates to: VMKDLLLIMPMY*SALHCVAELHL
Trigger: CAAATGCAGCTCAGCTACACAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR-3UTR CAA 90 bp CAGAAAATTCTTCAAATAAAGCATCAAACCTCAAAGACAGGGAAGAAACTACCTAAGTACAAACAGGAATaGAGAAGCGTTACCTGTCTT +
Preference number: 3 (lower is better)
Translates to: QKILQIKHQTSKTGKKLPKYKQE*RSVTCL
Trigger: AAGACAGGTAACGCTTCTCAATTCCTGTTTGTACTT...AGGTAGTTTCTTCCCTGTCTTTGAGGTTTGATGCTTTATTTGAAGAATTTTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCCAGCATGGCAGAGACTaGGGGTCTTTCCTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVQHGRD*GSFLSP
Trigger: AGGGGACAGGAAAGACCCTCAGTCTCTGCCATGCTG...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR GCA 90 bp CATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGATCCTGGAGGGGGATaGTGTAGTGCTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: HARTVAEGSLSSQHATAADPGGG*CSADPH
Trigger: ATGAGGGTCAGCACTACAGCATCCCCCTCCAGGATC...AGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCTCTGGGACGCTCAGCTaGAACCTGACTGTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVSGTLS*NLTVLS
Trigger: ACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGA...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTTTGTTGTGAGTaGACTGTAGAAGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATAAVCCE*TVEAPG
Trigger: GCCGGGAGCTTCTACAGTCCACTCACAACAAACAGC...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp ATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCCAGCATGGCAGAGACTaGGGGTCTTTCCTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: ISAGQGVQLGTLGLPHARQHGRD*GSFLSP
Trigger: AGGGGACAGGAAAGACCCTCAGTCTCTGCCATGCTG...GCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR TCA 90 bp TCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCATTCCCCAGAGGGCATTaGCTCCATCCACAGCCACCA +
Preference number: 4 (lower is better)
Translates to: SVQVRVFSLEPWDFLMRAFPRGH*LHPQPP
Trigger: TGGTGGCTGTGGATGGAGTCAATGCCCTCTGGGGAA...TGCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCCCAAAGATGAGCATCTaGGATATGCAGAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVPKMSI*DMQNQP
Trigger: TGGCTGATTCTGCATATCCCAGATGCTCATCTTTGG...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp CATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTTGTCTTGCACAAAAATaGACAGCATGGCAGAGACTG +
Preference number: 4 (lower is better)
Translates to: HARTVAEGSLSSQHATAACLAQK*TAWQRL
Trigger: CAGTCTCTGCCATGCTGTTCATTTTTGTGCAAGACA...AGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp GCAGAAGGCTTACTGACCCACACCAGGGCCTGTCAATCAGTGCTCAATATGGAAAGCCCTAGGGCGCTCTaGGCCTTCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: AEGLLTHTRACQSVLNMESPRAL*AFSSFS
Trigger: GCTGAAGGAGCTGAAGGCTCAGAGCGCCCTAGGGCT...TTCCATATTGAGCACTGATTGACAGGCCCTGGTGTGGGTCAGTAAGCCTTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp TATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGAGCCCTAGGGCGCTCTaGGCCTTCAGCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: YPSVQVRVFSLEPWDFLMSPRAL*AFSSFS
Trigger: GCTGAAGGAGCTGAAGGCTCAGAGCGCCCTAGGGCT...CATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR GCA 90 bp ATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCGATCCTGGAGGGGGATaGTGTAGTGCTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: ISAGQGVQLGTLGLPHARDPGGG*CSADPH
Trigger: ATGAGGGTCAGCACTACAGCATCCCCCTCCAGGATC...GCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp AGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCACGCTCGGGTCCAACTTCTaGACCCTGGAGAAAAGCCTT +
Preference number: 4 (lower is better)
Translates to: SAGQGVQLGTLGLPHARTLGSNF*TLEKSL
Trigger: AAGGCTTTTCTCCAGGGTCCAGAAGTTGGACCCGAG...CGTGCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp CATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTCCAAAGATGAGCATCTaGGATATGCAGAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: HARTVAEGSLSSQHATAAPKMSI*DMQNQP
Trigger: TGGCTGATTCTGCATATCCCAGATGCTCATCTTTGG...AGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
3UTR CAA 72 bp TCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTaGGGACTTCCTCATGCGCGCACGGTAGCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: SISAGQGVQLGT*GLPHARTVAEG
Trigger: TCCTTCAGCTACCGTGCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR TCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGATTATAGTTGGGAATaGGGATGGGAAGAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATADYSWE*GWEEKA
Trigger: AGCCTTTTCTTCCCATCCTCATTCCCAACTATAATC...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp CATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGAAGCTTTCTCATGTTaGAGCCAGTTGTTCTCTAAG +
Preference number: 4 (lower is better)
Translates to: HARTVAEGSLSSQHATAAEAFSC*SQLFSK
Trigger: CTTAGAGAACAACTGGCTTCAACATGAGAAAGCTTC...AGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR GCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCCAGCCAGTCATGTCTTaGACAAAAATGAACAGCATG +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATAQPVMS*TKMNSM
Trigger: CATGCTGTTCATTTTTGTGCAAGACATGACTGGCTG...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR GCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCACGATTGCACCTCCATaGCAGTCATTTTTCACCATT +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATATIAPP*QSFFTI
Trigger: AATGGTGAAAAATGACTGGCATGGAGGTGCAATCGT...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000174571.8
CDS-3UTR CCA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCCTGGATGAGCAAAATTaGTATTTTTCAGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVLDEQN*YFSGSP
Trigger: TGGGCTACCTGAAAAATACCAATTTTGCTCATCCAG...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR CCA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCATTTTCCTTAGATTGTaGACAAGGGAGAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVIFLRL*TRESSS
Trigger: AGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAAT...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCTATCGCACAGCTGGATaGGCAAAATTGGTATTTTTC +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATAYRTAG*AKLVFF
Trigger: GAAAAATACCAATTTTGCTCATCCAGCTGTGCGATA...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp TGTGATAGCTCAGCACAGCACTCTCTAGTGTACAGAGGTACAGAGCCTGAGGCACAGCATGGCAGAGACTaGGGGTCTTTCCTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: CDSSAQHSLVYRGTEPEAQHGRD*GSFLSP
Trigger: AGGGGACAGGAAAGACCCTCAGTCTCTGCCATGCTG...TGCCTCAGGCTCTGTACCTCTGTACACTAGAGAGTGCTGTGCTGAGCTATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR GCA 90 bp GGACTTCCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCCAGCCAGTCATGTCTTaGACAAAAATGAACAGCATG +
Preference number: 4 (lower is better)
Translates to: GLPHARTVAEGSLSSQHAQPVMS*TKMNSM
Trigger: CATGCTGTTCATTTTTGTGCAAGACATGACTGGCTG...GGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGGAAGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp TATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGTGCGGGAAACAGTTCTaGGACGCTCAGCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: YPSVQVRVFSLEPWDFLMCGKQF*DAQLEP
Trigger: AGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCA...CATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
3UTR CAA 72 bp GGTAGCTTCCTGGGGCCAATGAGATGGTGGTGGCATTaGCCATCTGCAAGCCTGACAATGAACACAGAAGGA +
Preference number: 4 (lower is better)
Translates to: GSFLGPMRWWWH*PSASLTMNTEG
Trigger: TCCTTCTGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATTGGCCCCAGGAAGCTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCGAGGAGGCAGGCCGTaGGGAAACACTGTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: ISYPSVQVRVFSLEPWDFRGGRP*GNTVFR
Trigger: TCTGAAGACAGTGTTTCCTCACGGCCTGCCTCCTCG...GAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp GGACTTCCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCCTGGATGAGCAAAATTaGTATTTTTCAGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: GLPHARTVAEGSLSSQHALDEQN*YFSGSP
Trigger: TGGGCTACCTGAAAAATACCAATTTTGCTCATCCAG...GGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGGAAGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp CATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTACTTTCAAACTCCTTTaGATTATAGTTGGGAATGAG +
Preference number: 4 (lower is better)
Translates to: HARTVAEGSLSSQHATAATFKLL*IIVGNE
Trigger: CTCATTCCCAACTATAATCCAAAGGAGTTTGAAAGT...AGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR CCA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCACTTTCAAACTCCTTTaGATTATAGTTGGGAATGAG +
Preference number: 4 (lower is better)
Translates to: PHARTVAEGSLSSQHATATFKLL*IIVGNE
Trigger: CTCATTCCCAACTATAATCCAAAGGAGTTTGAAAGT...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS-3UTR TCA 90 bp ATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCGATTATAGTTGGGAATaGGGATGGGAAGAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: ISAGQGVQLGTLGLPHARDYSWE*GWEEKA
Trigger: AGCCTTTTCTTCCCATCCTCATTCCCAACTATAATC...GCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp TTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCGCTGTTTGTTGTGAGTaGACTGTAGAAGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: FHIHQCRSGCSAWNLGTSAVCCE*TVEAPG
Trigger: GCCGGGAGCTTCTACAGTCCACTCACAACAAACAGC...GGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp AGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCGCGCACGATTTTCCTTAGATTGTaGACAAGGGAGAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SAGQGVQLGTLGLPHARTIFLRL*TRESSS
Trigger: AGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAAT...CGTGCGCGCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
3UTR CAA 72 bp CTGGCTGTCTCTGTAGGTAGTGCCACCACTGCTGATTaGAACTGCTGGTGTACCTGTGAAGTGTTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: LAVSVGSATTAD*NCWCTCEVFGS
Trigger: ACTCCCAAACACTTCACAGGTACACCAGCAGTTCAAATCAGCAGTGGTGGCACTACCTACAGAGACAGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATCCTATCATTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTTTCCCCAGAGGGCATTaGCTCCATCCACAGCCACCA +
Preference number: 4 (lower is better)
Translates to: ILSFHIHQCRSGCSAWNLFPRGH*LHPQPP
Trigger: TGGTGGCTGTGGATGGAGTCAATGCCCTCTGGGGAA...AAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAATGATAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp GCAGTTGTGGGAGTTGGTCCTGAATCTGATGTGAGTGATCTCTTGTTGAACCCACTCGGGTCCAACTTCTaGACCCTGGAGAAAAGCCTT +
Preference number: 4 (lower is better)
Translates to: AVVGVGPESDVSDLLLNPLGSNF*TLEKSL
Trigger: AAGGCTTTTCTCCAGGGTCCAGAAGTTGGACCCGAG...TGGGTTCAACAAGAGATCACTCACATCAGATTCAGGACCAACTCCCACAACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CCA 90 bp AATGAGATGGTGGTGGCATTTGCCATCTGCAAGCCTGACAATGAACACAGAAGGGCTGTTTGTTGTGAGTaGACTGTAGAAGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: NEMVVAFAICKPDNEHRRAVCCE*TVEAPG
Trigger: GCCGGGAGCTTCTACAGTCCACTCACAACAAACAGC...CCTTCTGTGTTCATTGTCAGGCTTGCAGATGGCAAATGCCACCACCATCTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CAA 72 bp CAGAGAGTGACTGAGGAAGACCATGGACGTCAGTCTTaGGCTTCACACACAAGGCATCCTACTGCTGTAGTA +
Preference number: 4 (lower is better)
Translates to: QRVTEEDHGRQS*ASHTRHPTAVV
Trigger: TACTACAGCAGTAGGATGCCTTGTGTGTGAAGCCAAAGACTGACGTCCATGGTCTTCCTCAGTCACTCTCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp TGTGATGAAGGATTTGTTGCTAATAATGCCCATGTATTGGTCTGCCTTACACTGCGAGGAGGCAGGCCGTaGGGAAACACTGTCTTCAGA +
Preference number: 4 (lower is better)
Translates to: CDEGFVANNAHVLVCLTLRGGRP*GNTVFR
Trigger: TCTGAAGACAGTGTTTCCTCACGGCCTGCCTCCTCG...CAGTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCTATCGCACAGCTGGATaGGCAAAATTGGTATTTTTC +
Preference number: 4 (lower is better)
Translates to: IHQCRSGCSAWNLGTSSCYRTAG*AKLVFF
Trigger: GAAAAATACCAATTTTGCTCATCCAGCTGTGCGATA...GCATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR TCA 90 bp GATGAGCTTCCCAAAGGCACAAGGTATAATTTCCCAAGTTCAGCGGATGCCCACTGTCTTGCACAAAAATaGACAGCATGGCAGAGACTG +
Preference number: 4 (lower is better)
Translates to: DELPKGTRYNFPSSADAHCLAQK*TAWQRL
Trigger: CAGTCTCTGCCATGCTGTTCATTTTTGTGCAAGACA...GTGGGCATCCGCTGAACTTGGGAAATTATACCTTGTGCCTTTGGGAAGCTCATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATTGTCTTGCACAAAAATaGACAGCATGGCAGAGACTG +
Preference number: 4 (lower is better)
Translates to: ISISAGQGVQLGTLGLPHCLAQK*TAWQRL
Trigger: CAGTCTCTGCCATGCTGTTCATTTTTGTGCAAGACA...ATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR TCA 90 bp GGAAATGGGATCTGGATTCTCACTGGGCATGGCACCTCTAACTACCCTAAGCACGAAGCTTTCTCATGTTaGAGCCAGTTGTTCTCTAAG +
Preference number: 4 (lower is better)
Translates to: GNGIWILTGHGTSNYPKHEAFSC*SQLFSK
Trigger: CTTAGAGAACAACTGGCTTCAACATGAGAAAGCTTC...GTGCTTAGGGTAGTTAGAGGTGCCATGCCCAGTGAGAATCCAGATCCCATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CCA 90 bp ATCCTATCATTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTTCTGGGACGCTCAGCTaGAACCTGACTGTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ILSFHIHQCRSGCSAWNLSGTLS*NLTVLS
Trigger: ACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGA...AAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAATGATAGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR GCA 90 bp GATGAGCTTCCCAAAGGCACAAGGTATAATTTCCCAAGTTCAGCGGATGCCCACCAGCCAGTCATGTCTTaGACAAAAATGAACAGCATG +
Preference number: 4 (lower is better)
Translates to: DELPKGTRYNFPSSADAHQPVMS*TKMNSM
Trigger: CATGCTGTTCATTTTTGTGCAAGACATGACTGGCTG...GTGGGCATCCGCTGAACTTGGGAAATTATACCTTGTGCCTTTGGGAAGCTCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CCA 90 bp GCCTTTGCAGTTGTGGGAGTTGGTCCTGAATCTGATGTGAGTGATCTCTTGTTGATTTTCCTTAGATTGTaGACAAGGGAGAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: AFAVVGVGPESDVSDLLLIFLRL*TRESSS
Trigger: AGAGGAACTCTCCCTTGTCCACAATCTAAGGAAAAT...CAACAAGAGATCACTCACATCAGATTCAGGACCAACTCCCACAACTGCAAAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATTAATACAACTGATAGTGAAGCCCTGTGGACTCAGATCCCTTGCAGTCAGGTAGATTATAGTTGGGAATaGGGATGGGAAGAAAAGGCT +
Preference number: 4 (lower is better)
Translates to: INTTDSEALWTQIPCSQVDYSWE*GWEEKA
Trigger: AGCCTTTTCTTCCCATCCTCATTCCCAACTATAATC...TACCTGACTGCAAGGGATCTGAGTCCACAGGGCTTCACTATCAGTTGTATTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CCA 90 bp TTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCACTTTCAAACTCCTTTaGATTATAGTTGGGAATGAG +
Preference number: 4 (lower is better)
Translates to: FHIHQCRSGCSAWNLGTSTFKLL*IIVGNE
Trigger: CTCATTCCCAACTATAATCCAAAGGAGTTTGAAAGT...GGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
3UTR CAA 72 bp AGCAAGCACCTGAAAGGACATGTGATGAAGGATTTGTaGCTAATAATGCCCATGTATTGGTCTGCCTTACAC +
Preference number: 4 (lower is better)
Translates to: SKHLKGHVMKDL*LIMPMYWSALH
Trigger: GTGTAAGGCAGACCAATACATGGGCATTATTAGCAACAAATCCTTCATCACATGTCCTTTCAGGTGCTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR TCA 90 bp ATCCTATCATTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTTATCGCACAGCTGGATaGGCAAAATTGGTATTTTTC +
Preference number: 4 (lower is better)
Translates to: ILSFHIHQCRSGCSAWNLYRTAG*AKLVFF
Trigger: GAAAAATACCAATTTTGCTCATCCAGCTGTGCGATA...AAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAATGATAGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CCA 90 bp GCCACGGTAAAGTGGAAATTTAAGGATTCTCTGGAAAGCTGGTTGGATGGTGTTCTGGATGAGCAAAATTaGTATTTTTCAGGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: ATVKWKFKDSLESWLDGVLDEQN*YFSGSP
Trigger: TGGGCTACCTGAAAAATACCAATTTTGCTCATCCAG...AACACCATCCAACCAGCTTTCCAGAGAATCCTTAAATTTCCACTTTACCGTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
3UTR CAA 72 bp AGGCAATGCCTTCATGGCCATGCTGTGCTACTGGCTTaGTTTCAAATTATGAATTATGAGTGGGCAATTAGT +
Preference number: 4 (lower is better)
Translates to: RQCLHGHAVLLA*FQIMNYEWAIS
Trigger: ACTAATTGCCCACTCATAATTCATAATTTGAAACAAAGCCAGTAGCACAGCATGGCCATGAAGGCATTGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR GCA 90 bp CAGAAAATTCTTCAAATAAAGCATCAAACCTCAAAGACAGGGAAGAAACTACCTACGATTGCACCTCCATaGCAGTCATTTTTCACCATT +
Preference number: 4 (lower is better)
Translates to: QKILQIKHQTSKTGKKLPTIAPP*QSFFTI
Trigger: AATGGTGAAAAATGACTGGCATGGAGGTGCAATCGT...AGGTAGTTTCTTCCCTGTCTTTGAGGTTTGATGCTTTATTTGAAGAATTTTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CAA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCTCAAGCTCAACACGATaGCACCTCCATGCCAGTCAT +
Preference number: 5 (lower is better)
Translates to: PHARTVAEGSLSSQHATASSSTR*HLHASH
Trigger: ATGACTGGCATGGAGGTGCAATCGTGTTGAGCTTGA...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000174571.8
CDS-3UTR CAA 90 bp GCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCGCTGTCTCCTCCCTTCTTCTGTaGAAGCTTTCTCATGTTGAA +
Preference number: 5 (lower is better)
Translates to: ARTVAEGSLSSQHATAAVSSLLL*KLSHVE
Trigger: TTCAACATGAGAAAGCTTCAACAGAAGAAGGGAGGA...GACAGCGGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS CCA 90 bp CCATCAGACAAGCTTCGCCAAAAGTCTTCACCGGGTCACTGTCACTaGTGCGGGAAACAGTTCTGGGACGCTCAGCTGGAACCTGACTGT +
Preference number: 5 (lower is better)
Translates to: PSDKLRQKSSPGHCH*CGKQFWDAQLEPDC
Trigger: ACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGAAGACTTTTGGCGAAGCTTGTCTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS-3UTR CAA 90 bp CCTCATGCGCGCACGGTAGCTGAAGGAAGCCTGTCTTCCCAGCATGCCACCGCCTCAGCCAGTCATGTCTaGCACAAAAATGAACAGCAT +
Preference number: 5 (lower is better)
Translates to: PHARTVAEGSLSSQHATASASHV*HKNEQH
Trigger: ATGCTGTTCATTTTTGTGCAAGACATGACTGGCTGA...GGCGGTGGCATGCTGGGAAGACAGGCTTCCTTCAGCTACCGTGCGCGCATGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000174571.8
CDS GCA 90 bp TCAGACAAGCTTCGCCAAAAGTCTTCACCGGGTCACTGTCACTGGTaGGGGAAACAGTTCTGGGACGCTCAGCTGGAACCTGACTGTTCT +
Preference number: 5 (lower is better)
Translates to: SDKLRQKSSPGHCHW*GKQFWDAQLEPDCS
Trigger: AGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGAAGACTTTTGGCGAAGCTTGTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS CCA 90 bp CAAAAGTCTTCACCGGGTCACTGTCACTGGTGCGGGAAACAGTTCTaGGACGCTCAGCTGGAACCTGACTGTTCTGAGTCGCTTGAACAC +
Preference number: 5 (lower is better)
Translates to: QKSSPGHCHWCGKQF*DAQLEPDCSESLEH
Trigger: GTGTTCAAGCGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGAAGACTTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS CCA 90 bp CGGGTCACTGTCACTGGTGCGGGAAACAGTTCTGGGACGCTCAGCTaGAACCTGACTGTTCTGAGTCGCTTGAACACTCATGTGCAAAAA +
Preference number: 5 (lower is better)
Translates to: RVTVTGAGNSSGTLS*NLTVLSRLNTHVQK
Trigger: TTTTTGCACATGAGTGTTCAAGCGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000172942.8
ENSMUST00000173021.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
ENSMUST00000174491.2
CDS-3UTR CAA 90 bp AGCCCTGTGGACTCAGATCCCTTGCAGTCAGGTAAACGCCAGGCACCACGGTCTTCCTCCCTTCTTCTGTaGAAGCTTTCTCATGTTGAA +
Preference number: 5 (lower is better)
Translates to: SPVDSDPLQSGKRQAPRSSSLLL*KLSHVE
Trigger: TTCAACATGAGAAAGCTTCAACAGAAGAAGGGAGGA...AGACCGTGGTGCCTGGCGTTTACCTGACTGCAAGGGATCTGAGTCCACAGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS TCA 90 bp AATTGGTATTTTTCAGGTAGCCCAGAAGCTCGAGAGCTGGCTTCCTaGCCATCAGACAAGCTTCGCCAAAAGTCTTCACCGGGTCACTGT +
Preference number: 5 (lower is better)
Translates to: NWYFSGSPEARELAS*PSDKLRQKSSPGHC
Trigger: ACAGTGACCCGGTGAAGACTTTTGGCGAAGCTTGTCTGATGGTCAGGAAGCCAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS TCA 90 bp AATTGGTATTTTTCAGGTAGCCCAGAAGCTCGAGAGCTGGCTTCCTaGCCATCAGACAAGCTTCGCCAAAAGTCTTCACCTGCATCATGT +
Preference number: 5 (lower is better)
Translates to: NWYFSGSPEARELAS*PSDKLRQKSSPASC
Trigger: ACATGATGCAGGTGAAGACTTTTGGCGAAGCTTGTCTGATGGTCAGGAAGCCAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000173021.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
CDS-3UTR CAA 90 bp TGTGATAGCTCAGCACAGCACTCTCTAGTGTACAGAGGTACAGAGCCTGAGGCATCAGCCAGTCATGTCTaGCACAAAAATGAACAGCAT +
Preference number: 5 (lower is better)
Translates to: CDSSAQHSLVYRGTEPEASASHV*HKNEQH
Trigger: ATGCTGTTCATTTTTGTGCAAGACATGACTGGCTGA...TGCCTCAGGCTCTGTACCTCTGTACACTAGAGAGTGCTGTGCTGAGCTATCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090938.11
CDS-3UTR CAA 90 bp TATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGTCCTCCCTTCTTCTGTaGAAGCTTTCTCATGTTGAA +
Preference number: 5 (lower is better)
Translates to: YPSVQVRVFSLEPWDFLMSSLLL*KLSHVE
Trigger: TTCAACATGAGAAAGCTTCAACAGAAGAAGGGAGGA...CATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CAA 90 bp ATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATACTGTTCTGAGTCGCTaGAACACTCATGTGCAAAAA +
Preference number: 5 (lower is better)
Translates to: ISISAGQGVQLGTLGLPHTVLSR*NTHVQK
Trigger: TTTTTGCACATGAGTGTTCAAGCGACTCAGAACAGT...ATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CAA 90 bp TATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCTTGGGACTTCCTCATGCCAAACATACTTCTCTaGAACTTTTATCTGACTCAG +
Preference number: 5 (lower is better)
Translates to: YPSVQVRVFSLEPWDFLMPNILL*NFYLTQ
Trigger: CTGAGTCAGATAAAAGTTCAAGAGAAGTATGTTTGG...CATGAGGAAGTCCCAAGGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS-3UTR CAA 90 bp ACATCCTATCATTTCATATCCATCAGTGCAGGTCAGGGTGTTCAGCTTGGAACCACTGTTCTGAGTCGCTaGAACACTCATGTGCAAAAA +
Preference number: 5 (lower is better)
Translates to: TSYHFISISAGQGVQLGTTVLSR*NTHVQK
Trigger: TTTTTGCACATGAGTGTTCAAGCGACTCAGAACAGT...GGTTCCAAGCTGAACACCCTGACCTGCACTGATGGATATGAAATGATAGGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
CDS GCA 72 bp ACAGCGAGGCACAGAGCCGCTCCAGCTGCTCAGGGTTaGAGTTACTCAGGAACCTCAGCTCCTTCCTCCCTT +
Preference number: 6 (lower is better)
Translates to: TARHRAAPAAQG*SYSGTSAPSSL
Trigger: AAGGGAGGAAGGAGCTGAGGTTCCTGAGTAACTGCAACCCTGAGCAGCTGGAGCGGCTCTGTGCCTCGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000173094.8
ENSMUST00000173135.8
ENSMUST00000174571.8
CDS CCA 72 bp TCACCGGGTCACTGTCACTGGTGCGGGAAACAGTTCTaGGACGCTCAGCTGGAACCTGACTGTTCTGAGTCG +
Preference number: 6 (lower is better)
Translates to: SPGHCHWCGKQF*DAQLEPDCSES
Trigger: CGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS TCA 72 bp GTCTTCACCTGCATCATGTACCGAGGAGGCAGGCCGTaGGGAAACACTGTCTTCAGATCCTGGAGGGGGATG +
Preference number: 6 (lower is better)
Translates to: VFTCIMYRGGRP*GNTVFRSWRGM
Trigger: CATCCCCCTCCAGGATCTGAAGACAGTGTTTCCTCACGGCCTGCCTCCTCGGTACATGATGCAGGTGAAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000173021.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
CDS GCA 72 bp CTTCGCCAAAAGTCTTCACCGGGTCACTGTCACTGGTaGGGGAAACAGTTCTGGGACGCTCAGCTGGAACCT +
Preference number: 6 (lower is better)
Translates to: LRQKSSPGHCHW*GKQFWDAQLEP
Trigger: AGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGAAGACTTTTGGCGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS CCA 72 bp CCTTCAGCTCCTTCAGCACGACCCCAACAGCGTCAGTaGCATTCCTCACTCGGGTTAGGCCCTGTTCAACAA +
Preference number: 6 (lower is better)
Translates to: PSAPSARPQQRQ*HSSLGLGPVQQ
Trigger: TTGTTGAACAGGGCCTAACCCGAGTGAGGAATGCCACTGACGCTGTTGGGGTCGTGCTGAAGGAGCTGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000173135.8
CDS CCA 72 bp AAGCTTCGCCAAAAGTCTTCACCGGGTCACTGTCACTaGTGCGGGAAACAGTTCTGGGACGCTCAGCTGGAA +
Preference number: 6 (lower is better)
Translates to: KLRQKSSPGHCH*CGKQFWDAQLE
Trigger: TTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGACAGTGACCCGGTGAAGACTTTTGGCGAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172942.8
CDS CCA 72 bp GTCACTGGTGCGGGAAACAGTTCTGGGACGCTCAGCTaGAACCTGACTGTTCTGAGTCGCTTGAACACTCAT +
Preference number: 6 (lower is better)
Translates to: VTGAGNSSGTLS*NLTVLSRLNTH
Trigger: ATGAGTGTTCAAGCGACTCAGAACAGTCAGGTTCCAGCTGAGCGTCCCAGAACTGTTTCCCGCACCAGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000172942.8
ENSMUST00000173021.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
ENSMUST00000174491.2
CDS CCA 72 bp ATTGGTATTTTTCAGGTAGCCCAGAAGCTCGAGAGCTaGCTTCCTGACCATCAGACAAGCTTCGCCAAAAGT +
Preference number: 6 (lower is better)
Translates to: IGIFQVAQKLES*LPDHQTSFAKS
Trigger: ACTTTTGGCGAAGCTTGTCTGATGGTCAGGAAGCCAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000172942.8
ENSMUST00000173021.8
ENSMUST00000173094.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
CDS GCA 72 bp CCGGTTTGGCTCAAGCTCAACACGATTGCACCTCCATaGCAGTCATTTTTCACCATTTTCCTTAGATTGTGG +
Preference number: 6 (lower is better)
Translates to: PVWLKLNTIAPP*QSFFTIFLRLW
Trigger: CCACAATCTAAGGAAAATGGTGAAAAATGACTGGCATGGAGGTGCAATCGTGTTGAGCTTGAGCCAAACCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000090938.11
ENSMUST00000173094.8
ENSMUST00000173135.8
ENSMUST00000174571.8
CDS CCA 72 bp CATAAAGAAGATATCGCACAGCTGGATGAGCAAAATTaGTATTTTTCAGGTAGCCCAGAAGCTCGAGAGCTG +
Preference number: 6 (lower is better)
Translates to: HKEDIAQLDEQN*YFSGSPEAREL
Trigger: CAGCTCTCGAGCTTCTGGGCTACCTGAAAAATACCAATTTTGCTCATCCAGCTGTGCGATATCTTCTTTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000090938.11
ENSMUST00000107491.11
ENSMUST00000172942.8
ENSMUST00000173021.8
ENSMUST00000173094.8
ENSMUST00000173135.8
ENSMUST00000174077.8
ENSMUST00000174402.8
ENSMUST00000174571.8