Pregenerated sensors for DAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039168Ensembl transcript IDs: ENSMUST00000044524.16, ENSMUST00000185618.2, ENSMUST00000186109.2, ENSMUST00000186425.7, ENSMUST00000186547.7
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAGCAGCGCTCGGGAAGGCTCTACGTCTGGCTAAGGGAGCCCTTTaGCTTTTCAGAAAAGCAGGGCTCTGCAGCCTCGGCCTGGGAGCA | + |
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Preference number: 1 (lower is better) Translates to: RAALGKALRLAKGAL*LFRKAGLCSLGLGA Trigger: TGCTCCCAGGCCGAGGCTGCAGAGCCCTGCTTTTCTGAAAAGTCAAAGGGCTCCCTTAGCCAGACGTAGAGCCTTCCCGAGCGCTGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR CCA 90 bp | GCCAGGAGCACCCGCCAAGAGCAGCGCTCGGGAAGGCTCTACGTCTaGCTAAGGGAGCCCTTTGACTTTTCAGAAAAGCAGGGCTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: ARSTRQEQRSGRLYV*LREPFDFSEKQGSA Trigger: TGCAGAGCCCTGCTTTTCTGAAAAGTCAAAGGGCTCCCTTAGCCAGACGTAGAGCCTTCCCGAGCGCTGCTCTTGGCGGGTGCTCCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR TCA 90 bp | GGCCTTATCAAATCTCTCCAAAGTGGCCTCTTCCTCTCAGGACCATaGGTAAGGACTTTCAGCGACTGCTACAGTGTGAAGGACTTGCCG | + |
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Preference number: 1 (lower is better) Translates to: GLIKSLQSGLFLSGP*VRTFSDCYSVKDLP Trigger: CGGCAAGTCCTTCACACTGTAGCAGTCGCTGAAAGTCCTTACTCATGGTCCTGAGAGGAAGAGGCCACTTTGGAGAGATTTGATAAGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR CCA 90 bp | GCACAGCTGTGGTGGAGCATATGGCCTTATCAAATCTCTCCAAAGTaGCCTCTTCCTCTCAGGACCATGAGTAAGGACTTTCAGCGACTG | + |
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Preference number: 1 (lower is better) Translates to: AQLWWSIWPYQISPK*PLPLRTMSKDFQRL Trigger: CAGTCGCTGAAAGTCCTTACTCATGGTCCTGAGAGGAAGAGGCCACTTTGGAGAGATTTGATAAGGCCATATGCTCCACCACAGCTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR GCA 90 bp | ACACAGGGTAGCCCCTCAGGTTGTTTAACTAAAAGGGATTGGAGATaGTTCAGGATGTACACAGCACAGTGTAGGAAGGTCTGCACAGGG | + |
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Preference number: 1 (lower is better) Translates to: TQGSPSGCLTKRDWR*FRMYTAQCRKVCTG Trigger: CCCTGTGCAGACCTTCCTACACTGTGCTGTGTACATCCTGAAGCATCTCCAATCCCTTTTAGTTAAACAACCTGAGGGGCTACCCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR TCA 90 bp | CCCTTGGTTACTTCACACCATTTCAGTAATTACAACGGGAGAAACTaGCGACACAGACTTGTGGCCTGGGTTCTGCTTCCTGTAAATCCA | + |
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Preference number: 1 (lower is better) Translates to: PLVTSHHFSNYNGRN*RHRLVAWVLLPVNP Trigger: TGGATTTACAGGAAGCAGAACCCAGGCCACAAGTCTGTGTCGTCAGTTTCTCCCGTTGTAATTACTGAAATGGTGTGAAGTAACCAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR-3UTR TCA 90 bp | GTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGTGCTGCTGCTGCTTCTaGGGTGCCTGGGTCTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: VNSVGSTGVAFCQGSILECCCCF*GAWVWA Trigger: CGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCA...CTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR-3UTR CCA 90 bp | CTCTGCAGCCTCGGCCTGGGAGCAGAAGTGAGCACAGCTGTGGTGGAGCATATGCAAATCTCTCCAAAGTaGCCTCTTCCTCTCAGGACC | + |
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Preference number: 2 (lower is better) Translates to: LCSLGLGAEVSTAVVEHMQISPK*PLPLRT Trigger: GGTCCTGAGAGGAAGAGGCCACTTTGGAGAGATTTG...CATATGCTCCACCACAGCTGTGCTCACTTCTGCTCCCAGGCCGAGGCTGCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR-3UTR TCA 90 bp | AAAGGGATTGGAGATGCTTCAGGATGTACACAGCACAGTGTAGGAAGGTCTGCATGCTGCTGCTGCTTCTaGGGTGCCTGGGTCTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: KGIGDASGCTQHSVGRSACCCCF*GAWVWA Trigger: CGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCA...TGCAGACCTTCCTACACTGTGCTGTGTACATCCTGAAGCATCTCCAATCCCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR-3UTR TCA 90 bp | TATGGGAATCTGAGAGAGCTGAGGCCCATGTTGCTTTGTCTGAGGTTTCTAAATTGCTGCTGCTGCTTCTaGGGTGCCTGGGTCTGGGCG | + |
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Preference number: 2 (lower is better) Translates to: YGNLRELRPMLLCLRFLNCCCCF*GAWVWA Trigger: CGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCA...ATTTAGAAACCTCAGACAAAGCAACATGGGCCTCAGCTCTCTCAGATTCCCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 |
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| 3UTR-3UTR CCA 90 bp | AAAGGGATTGGAGATGCTTCAGGATGTACACAGCACAGTGTAGGAAGGTCTGCAGAAGCATCCTGGAGATaGTGTGGGTGCTGCTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: KGIGDASGCTQHSVGRSAEASWR*CGCCCC Trigger: GCAGCAGCAGCACCCACACCATCTCCAGGATGCTTC...TGCAGACCTTCCTACACTGTGCTGTGTACATCCTGAAGCATCTCCAATCCCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR-3UTR GCA 90 bp | AATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCAGATGGTGTGGGTGCTaGTGCTGCTGCTGCTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: NVVNSVGSTGVAFCQGSIRWCGC*CCCCCC Trigger: GCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCT...GATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR-3UTR GCA 90 bp | GTTTCTAAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAGATGGTGTGGGTGCTaGTGCTGCTGCTGCTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VSKCSKLCGKYGSCFLSGRWCGC*CCCCCC Trigger: GCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCT...CCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTTAGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR CAA 90 bp | GTTTCTAAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTaGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: VSKCSKLCGKYGSCF*SGKHPGDGVGAAAA Trigger: AGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTTAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR TCA 72 bp | AGGCTGGAGGTGCACACGGTGCCTGCAGAGCAAGCATaGACTGCAGCTGGAGCCACCGTAGGCCACTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: RLEVHTVPAEQA*TAAGATVGHWD Trigger: GTCCCAGTGGCCTACGGTGGCTCCAGCTGCAGTTCATGCTTGCTCTGCAGGCACCGTGTGCACCTCCAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR GCA 72 bp | AGTAGTCCCATGAAGGCTGGAGGTGCACACGGTGCCTaGAGAGCAAGCATGAACTGCAGCTGGAGCCACCGT | + |
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Preference number: 3 (lower is better) Translates to: SSPMKAGGAHGA*RASMNCSWSHR Trigger: ACGGTGGCTCCAGCTGCAGTTCATGCTTGCTCTGCAGGCACCGTGTGCACCTCCAGCCTTCATGGGACTACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR CCA 72 bp | CGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATaGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: RELLFVREASWR*CGCCCCCCCCC Trigger: GCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR TCA 72 bp | CTCGGGAAGGCTCTACGTCTGGCTAAGGGAGCCCTTTaGCTTTTCAGAAAAGCAGGGCTCTGCAGCCTCGGC | + |
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Preference number: 3 (lower is better) Translates to: LGKALRLAKGAL*LFRKAGLCSLG Trigger: GCCGAGGCTGCAGAGCCCTGCTTTTCTGAAAAGTCAAAGGGCTCCCTTAGCCAGACGTAGAGCCTTCCCGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR CCA 72 bp | GTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTaGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: VAFCQGSILEMV*VLLLLLLLLLL Trigger: CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR-3UTR CAA 90 bp | CTCTGCAGCCTCGGCCTGGGAGCAGAAGTGAGCACAGCTGTGGTGGAGCATATGTGGGAAGTACGGGAGTaGCTTTTTGTCAGGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: LCSLGLGAEVSTAVVEHMWEVRE*LFVREA Trigger: TGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCA...CATATGCTCCACCACAGCTGTGCTCACTTCTGCTCCCAGGCCGAGGCTGCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR CCA 72 bp | CCCTTCCTAGATTTGGTTGTGGGTTGCGGCCAAGCCTaGGTCTCCAAAGCGACCCTTGGTTACTTCACACCA | + |
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Preference number: 3 (lower is better) Translates to: PFLDLVVGCGQA*VSKATLGYFTP Trigger: TGGTGTGAAGTAACCAAGGGTCGCTTTGGAGACCCAGGCTTGGCCGCAACCCACAACCAAATCTAGGAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR GCA 72 bp | TGCTTCAGGATGTACACAGCACAGTGTAGGAAGGTCTaGACAGGGGGACCTAGCCTTATGGCTTTAAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: CFRMYTAQCRKV*TGGPSLMALRS Trigger: GGACCTTAAAGCCATAAGGCTAGGTCCCCCTGTGCAGACCTTCCTACACTGTGCTGTGTACATCCTGAAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR-3UTR CAA 90 bp | GGCCTGGGTTCTGCTTCCTGTAAATCCACTGCTGGGGTACTAAATTGCTCAAAATACGGGAGTTGCTTTTaGTCAGGGAAGCATCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: GLGSASCKSTAGVLNCSKYGSCF*SGKHPG Trigger: TCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTA...TTTTGAGCAATTTAGTACCCCAGCAGTGGATTTACAGGAAGCAGAACCCAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR TCA 72 bp | ACTTCACACCATTTCAGTAATTACAACGGGAGAAACTaGCGACACAGACTTGTGGCCTGGGTTCTGCTTCCT | + |
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Preference number: 3 (lower is better) Translates to: TSHHFSNYNGRN*RHRLVAWVLLP Trigger: AGGAAGCAGAACCCAGGCCACAAGTCTGTGTCGTCAGTTTCTCCCGTTGTAATTACTGAAATGGTGTGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| 3UTR GCA 72 bp | AGCCCCTCAGGTTGTTTAACTAAAAGGGATTGGAGATaGTTCAGGATGTACACAGCACAGTGTAGGAAGGTC | + |
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Preference number: 3 (lower is better) Translates to: SPSGCLTKRDWR*FRMYTAQCRKV Trigger: GACCTTCCTACACTGTGCTGTGTACATCCTGAAGCATCTCCAATCCCTTTTAGTTAAACAACCTGAGGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCGAGGCGTGTGGCTTCTaGTGGGCCACCTGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAAASEVPGSGREACGF*WATCAA Trigger: GGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTC...GCGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCCGGGTCCATGGAGGCGTGTaGCTTCTGGTGGGCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAASEVPGSGRRVHGGV*LLVGHL Trigger: CAGGTGGCCCACCAGAAGCCACACGCCTCCATGGAC...CCGGCGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGGCGTGTGGCTTCTGGTaGGCCACCTGTGCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAAAASEVPGSGACGFW*ATCAAA Trigger: AGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGC...CCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCGTGTGGCTTCTGGTaGGCCACCTGTGCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: LLLLLLLLLLLLRCLGLGACGFW*ATCAAA Trigger: AGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGC...GCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCCGGCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAASEVPGSGRRHLCSR*REVFVT Trigger: GGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTG...CCGGCGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCGCGTGTGGCTTCTGGTaGGCCACCTGTGCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: VREASWRWCGCCCCCCCCACGFW*ATCAAA Trigger: AGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGC...GCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCCGGCCCATCTCCGGTATGTaGGTGTTTCTGCACAATCCG | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAASEVPGSGRRPISGM*VFLHNP Trigger: CGGATTGTGCAGAAACACCCACATACCGGAGATGGG...CCGGCGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: LLLLLLLLLLLLRCLGLGHLCSR*REVFVT Trigger: GGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTG...GCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAAAASEVPGSGHLCSR*REVFVT Trigger: GGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTG...CCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GCTCTGCAGCCTCGGCCTGGGAGCAGAAGTGAGCACAGCTGTGGTGGAGCATATGAGGCGTGTGGCTTCTaGTGGGCCACCTGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: ALQPRPGSRSEHSCGGAYEACGF*WATCAA Trigger: GGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTC...ATATGCTCCACCACAGCTGTGCTCACTTCTGCTCCCAGGCCGAGGCTGCAGAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CCA 90 bp | AGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCGTCCATGGAGGCGTGTaGCTTCTGGTGGGCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: REASWRWCGCCCCCCCCCVHGGV*LLVGHL Trigger: CAGGTGGCCCACCAGAAGCCACACGCCTCCATGGAC...GCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | TTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGGCGTGTGGCTTCTGGTaGGCCACCTGTGCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: FCQGSILEMVWVLLLLLLACGFW*ATCAAA Trigger: AGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGC...CAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR GCA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGGGCTGTTGGATATGCTaGGTTCTTGGAGAAACGTGT | + |
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Preference number: 4 (lower is better) Translates to: AAAAAAAAAAASEVPGSGGCWIC*VLGETC Trigger: ACACGTTTCTCCAAGAACGCAGCATATCCAACAGCC...CCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGTCCATGGAGGCGTGTaGCTTCTGGTGGGCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: GSCFLSGKHPGDGVGAAAVHGGV*LLVGHL Trigger: CAGGTGGCCCACCAGAAGCCACACGCCTCCATGGAC...AGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGGTCCATGGAGGCGTGTaGCTTCTGGTGGGCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: GVAFCQGSILEMVWVLLLVHGGV*LLVGHL Trigger: CAGGTGGCCCACCAGAAGCCACACGCCTCCATGGAC...CAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | ACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGGAGGCGTGTGGCTTCTaGTGGGCCACCTGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TLWEVRELLFVREASWRWEACGF*WATCAA Trigger: GGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTC...CCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR GCA 90 bp | GAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCTGTTGGATATGCTaGGTTCTTGGAGAAACGTGT | + |
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Preference number: 4 (lower is better) Translates to: EASWRWCGCCCCCCCCCCGCWIC*VLGETC Trigger: ACACGTTTCTCCAAGAACGCAGCATATCCAACAGCC...GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | AGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCAGAGATGAACACTGTTaGTTTAGGTGGGCTGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: REASWRWCGCCCCCCCCCRDEHC*FRWAGA Trigger: AGCACCAGCCCACCTAAACCAACAGTGTTCATCTCT...GCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCGCGGGTGTCCAGCTTTaGTCTCCAGCTTTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: ELLFVREASWRWCGCCCCAGVQL*SPAFLL Trigger: CAGAAGGAAAGCTGGAGACCAAAGCTGGACACCCGC...GCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CCA 90 bp | GGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCCCATCTCCGGTATGTaGGTGTTTCTGCACAATCCG | + |
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Preference number: 4 (lower is better) Translates to: GVAFCQGSILEMVWVLLLPISGM*VFLHNP Trigger: CGGATTGTGCAGAAACACCCACATACCGGAGATGGG...CAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR GCA 90 bp | GTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGGGCTGTTGGATATGCTaGGTTCTTGGAGAAACGTGT | + |
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Preference number: 4 (lower is better) Translates to: VAFCQGSILEMVWVLLLLGCWIC*VLGETC Trigger: ACACGTTTCTCCAAGAACGCAGCATATCCAACAGCC...CAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | AAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATGAGGCGTGTGGCTTCTaGTGGGCCACCTGTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KCSKLCGKYGSCFLSGKHEACGF*WATCAA Trigger: GGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTC...ATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | AATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACC | + |
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Preference number: 4 (lower is better) Translates to: NVVNSVGSTGVAFCQGSIHLCSR*REVFVT Trigger: GGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTG...GATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CCA 90 bp | GGCCTGGGTTCTGCTTCCTGTAAATCCACTGCTGGGGTACTAAATTGCTCAAAACACTGTTGGTTTAGGTaGGCTGGTGCTTTCCCATTC | + |
|
Preference number: 4 (lower is better) Translates to: GLGSASCKSTAGVLNCSKHCWFR*AGAFPF Trigger: GAATGGGAAAGCACCAGCCCACCTAAACCAACAGTG...TTTTGAGCAATTTAGTACCCCAGCAGTGGATTTACAGGAAGCAGAACCCAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CCA 90 bp | AACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGAGAGATGAACACTGTTaGTTTAGGTGGGCTGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: NSVGSTGVAFCQGSILEMRDEHC*FRWAGA Trigger: AGCACCAGCCCACCTAAACCAACAGTGTTCATCTCT...CATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR GCA 90 bp | GTTTCTAAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGGTATGTGGGTGTTTCTaGACAATCCGCATCCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: VSKCSKLCGKYGSCFLSGVCGCF*TIRIPP Trigger: CGGCGGGATGCGGATTGTGCAGAAACACCCACATAC...CCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTTAGAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CCA 90 bp | AGGCCCATGTTGCTTTGTCTGAGGTTTCTAAATGTAGTAAACTCTGTGGGAAGTCCCATCTCCGGTATGTaGGTGTTTCTGCACAATCCG | + |
|
Preference number: 4 (lower is better) Translates to: RPMLLCLRFLNVVNSVGSPISGM*VFLHNP Trigger: CGGATTGTGCAGAAACACCCACATACCGGAGATGGG...ACTTCCCACAGAGTTTACTACATTTAGAAACCTCAGACAAAGCAACATGGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 |
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| CDS-3UTR GCA 90 bp | GTTTCTAAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGGGCTGTTGGATATGCTaGGTTCTTGGAGAAACGTGT | + |
|
Preference number: 4 (lower is better) Translates to: VSKCSKLCGKYGSCFLSGGCWIC*VLGETC Trigger: ACACGTTTCTCCAAGAACGCAGCATATCCAACAGCC...CCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTTAGAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| 3UTR CAA 72 bp | ATATGGGAATCTGAGAGAGCTGAGGCCCATGTTGCTTaGTCTGAGGTTTCTAAATGTAGTAAACTCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: IWESERAEAHVA*SEVSKCSKLCG Trigger: CCCACAGAGTTTACTACATTTAGAAACCTCAGACAAAGCAACATGGGCCTCAGCTCTCTCAGATTCCCATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGCGCCGGCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: AAAAAAAAASEVPGSGRRLGETC*SMEACG Trigger: GCCACACGCCTCCATGGACAAACACGTTTCTCCAAG...CCGGCGCCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS GCA 90 bp | TCCTTGTCTCTCTCTTCCTTCCCATCTCCGGTATGTGGGTGTTTCTaGACAATCCGCATCCCGCCGGCTTTCACGGCGGGCGGGTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SLSLSSFPSPVCGCF*TIRIPPAFTAGGCP Trigger: TGGACACCCGCCCGCCGTGAAAGCCGGCGGGATGCGGATTGTGCAGAAACACCCACATACCGGAGATGGGAAGGAAGAGAGAGACAAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS CCA 90 bp | GTCCATGGAGGCGTGTGGCTTCTGGTGGGCCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACCCCGAGCAATAACGCCAGAGATGAA | + |
|
Preference number: 5 (lower is better) Translates to: VHGGVWLLVGHLCSR*REVFVTPSNNARDE Trigger: TTCATCTCTGGCGTTATTGCTCGGGGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGAGGTGCCTGGGTCTGGGGGTGCTTTCCCATTCTaGGTCATCCTTGTCTCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: AAAAAAAAAAASEVPGSGGAFPF*VILVSL Trigger: GAGAGAGACAAGGATGACCAAGAATGGGAAAGCACC...CCCAGACCCAGGCACCTCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | AGGGAAGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: REASWRWCGCCCCCCCCCLGETC*SMEACG Trigger: GCCACACGCCTCCATGGACAAACACGTTTCTCCAAG...GCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCTTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | AGCATCCTGGAGATGGTGTGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SILEMVWVLLLLLLLLLLLGETC*SMEACG Trigger: GCCACACGCCTCCATGGACAAACACGTTTCTCCAAG...CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCACACCATCTCCAGGATGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CCA 90 bp | GAGGCTGTTGGATATGCTGCGTTCTTGGAGAAACGTGTTTGTCCATaGAGGCGTGTGGCTTCTGGTGGGCCACCTGTGCAGCCGCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: EAVGYAAFLEKRVCP*RRVASGGPPVQPLE Trigger: CTCCAGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAACGCAGCATATCCAACAGCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | GTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGGGCGGGTGTCCAGCTTaGGTCTCCAGCTTTCCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VNSVGSTGVAFCQGSILEGGCPA*VSSFPS Trigger: AGAAGGAAAGCTGGAGACCAAAGCTGGACACCCGCC...CTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS-3UTR CAA 90 bp | GGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCTGGAGATGGTGTGGGTCATTCTTGGTCATCCTaGTCTCTCTCTTCCTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: GKYGSCFLSGKHPGDGVGHSWSS*SLSSFP Trigger: TGGGAAGGAAGAGAGAGACAAGGATGACCAAGAATG...ACCCACACCATCTCCAGGATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | CTAAATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: LNVVNSVGSTGVAFCQGSLGETC*SMEACG Trigger: GCCACACGCCTCCATGGACAAACACGTTTCTCCAAG...GCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS-3UTR CAA 90 bp | GAGCTGAGGCCCATGTTGCTTTGTCTGAGGTTTCTAAATGTAGTAAACTCTGTGCATTCTTGGTCATCCTaGTCTCTCTCTTCCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: ELRPMLLCLRFLNVVNSVHSWSS*SLSSFP Trigger: TGGGAAGGAAGAGAGAGACAAGGATGACCAAGAATG...CACAGAGTTTACTACATTTAGAAACCTCAGACAAAGCAACATGGGCCTCAGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 |
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| CDS-3UTR CAA 90 bp | AATGTAGTAAACTCTGTGGGAAGTACGGGAGTTGCTTTTTGTCAGGGAAGCATCCATTCTTGGTCATCCTaGTCTCTCTCTTCCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: NVVNSVGSTGVAFCQGSIHSWSS*SLSSFP Trigger: TGGGAAGGAAGAGAGAGACAAGGATGACCAAGAATG...GATGCTTCCCTGACAAAAAGCAACTCCCGTACTTCCCACAGAGTTTACTACATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044524.16 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CCA 72 bp | GGCGTGTGGCTTCTGGTGGGCCACCTGTGCAGCCGCTaGAGGGAAGTCTTTGTCACCCCGAGCAATAACGCC | + |
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Preference number: 6 (lower is better) Translates to: GVWLLVGHLCSR*REVFVTPSNNA Trigger: GGCGTTATTGCTCGGGGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS GCA 72 bp | CTCTCTTCCTTCCCATCTCCGGTATGTGGGTGTTTCTaGACAATCCGCATCCCGCCGGCTTTCACGGCGGGC | + |
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Preference number: 6 (lower is better) Translates to: LSSFPSPVCGCF*TIRIPPAFTAG Trigger: GCCCGCCGTGAAAGCCGGCGGGATGCGGATTGTGCAGAAACACCCACATACCGGAGATGGGAAGGAAGAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044524.16 |
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| CDS CCA 72 bp | CGTTCTTGGAGAAACGTGTTTGTCCATGGAGGCGTGTaGCTTCTGGTGGGCCACCTGTGCAGCCGCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RSWRNVFVHGGV*LLVGHLCSRWR Trigger: CCTCCAGCGGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CCA 72 bp | GTCACCCCGAGCAATAACGCCAGAGATGAACACTGTTaGTTTAGGTGGGCGGCGGGCGGGTGTCCAGCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: VTPSNNARDEHC*FRWAAGGCPAL Trigger: CAAAGCTGGACACCCGCCCGCCGCCCACCTAAACCAACAGTGTTCATCTCTGGCGTTATTGCTCGGGGTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186109.2 |
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| CDS CAA 90 bp | CACTTGCGAGGCTGTTGGATATGCTGCGTTCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGCTTCTGGTGGGCCACCTGTGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: HLRGCWICCVLGETC*SMEACGFWWATCAA Trigger: GGCTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAACGCAGCATATCCAACAGCCTCGCAAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CAA 72 bp | TGGTGGGCCACCTGTGCAGCCGCTGGAGGGAAGTCTTaGTCACCCCGAGCAATAACGCCAGAGATGAACACT | + |
|
Preference number: 6 (lower is better) Translates to: WWATCAAAGGKS*SPRAITPEMNT Trigger: AGTGTTCATCTCTGGCGTTATTGCTCGGGGTGACAAAGACTTCCCTCCAGCGGCTGCACAGGTGGCCCACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CCA 72 bp | GGATATGCTGCGTTCTTGGAGAAACGTGTTTGTCCATaGAGGCGTGTGGCTTCTGGTGGGCCACCTGTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: GYAAFLEKRVCP*RRVASGGPPVQ Trigger: CTGCACAGGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAACGCAGCATATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CAA 72 bp | GGCTGTTGGATATGCTGCGTTCTTGGAGAAACGTGTTaGTCCATGGAGGCGTGTGGCTTCTGGTGGGCCACC | + |
|
Preference number: 6 (lower is better) Translates to: GCWICCVLGETC*SMEACGFWWAT Trigger: GGTGGCCCACCAGAAGCCACACGCCTCCATGGACAAACACGTTTCTCCAAGAACGCAGCATATCCAACAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044524.16 ENSMUST00000185618.2 ENSMUST00000186109.2 ENSMUST00000186425.7 ENSMUST00000186547.7 |
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| CDS CCA 72 bp | AGCAATAACGCCAGAGATGAACACTGTTGGTTTAGGTaGGATCAAGATACTTCTACTTCCCCGTGCCACCAT | + |
|
Preference number: 6 (lower is better) Translates to: SNNARDEHCWFR*DQDTSTSPCHH Trigger: ATGGTGGCACGGGGAAGTAGAAGTATCTTGATCCCACCTAAACCAACAGTGTTCATCTCTGGCGTTATTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185618.2 |
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