RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DAGLA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035735

Ensembl transcript IDs: ENSMUST00000039327.11, ENSMUST00000125567.8

Found 402 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTCTCCATGGTGGCCAGTGGTGCCCGCCGGGACTGCAGCTCTGCTaGCAGTCGCTCCTGGGTGGACAGCAGCAGAAGCTCTACGGGGTC +
Preference number: 1 (lower is better)
Translates to: ALHGGQWCPPGLQLC*QSLLGGQQQKLYGV
Trigger: GACCCCGTAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATGGAGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp GAGGCTCTCCATGGTGGCCAGTGGTGCCCGCCGGGACTGCAGCTCTaGTGCCAGTCGCTCCTGGGTGGACAGCAGCAGAAGCTCTACGGG +
Preference number: 1 (lower is better)
Translates to: EALHGGQWCPPGLQL*CQSLLGGQQQKLYG
Trigger: CCCGTAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATGGAGAGCCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp GCCAGGCCAGTGGGCAGAGGTGGGCCCGTGGGCAACGGCTGTTGCTaGAAGATGAGCTCGGGAGTGAGGTCTACCTCGGTGGGGCTCACC +
Preference number: 1 (lower is better)
Translates to: ARPVGRGGPVGNGCC*KMSSGVRSTSVGLT
Trigger: GGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp CTGGGAAGGAGCTGGTGGCCACTGCCAAGTGCTAGCGTGCCGAGATaGCCAGGTCATCCTGCTTGGTGGGGCTGGCCCCGTGGCCTGTGG +
Preference number: 1 (lower is better)
Translates to: LGRSWWPLPSASVPR*PGHPAWWGWPRGLW
Trigger: CCACAGGCCACGGGGCCAGCCCCACCAAGCAGGATGACCTGGTCATCTCGGCACGCTAGCACTTGGCAGTGGCCACCAGCTCCTTCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp CCCCCGCTGCCTAGAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTaGTTGGACAGACTGTCGGCTGCCAGCAGCTCTGTGCGTGAGCTG +
Preference number: 1 (lower is better)
Translates to: PPLPRAASRGWVSCE*LDRLSAASSSVREL
Trigger: CAGCTCACGCACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp CGCTCAGGAGTCACACCCCCGCTGCCTAGAGCCGCCTCCAGGGGTTaGGTGTCCTGTGAGTGCTTGGACAGACTGTCGGCTGCCAGCAGC +
Preference number: 1 (lower is better)
Translates to: RSGVTPPLPRAASRG*VSCECLDRLSAASS
Trigger: GCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGGGGGTGTGACTCCTGAGCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp CTGGGTGGACAGCAGCAGAAGCTCTACGGGGTCTTGTCGGGCTGCTaGTGCAGCAGCCACTGGGGACAGCAGCCGGCCCTCAGAGAAGCC +
Preference number: 1 (lower is better)
Translates to: LGGQQQKLYGVLSGC*CSSHWGQQPALREA
Trigger: GGCTTCTCTGAGGGCCGGCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCTTCTGCTGCTGTCCACCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp TATGGAAGTCGCCCAGCTCCCTGGGAGGACAGGCCAGCGCATGGCTaGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGG +
Preference number: 1 (lower is better)
Translates to: YGSRPAPWEDRPAHG*ESLCCGSGDSVCVG
Trigger: CCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp CGGGGTCGTGCAGGGCAGAGACAGCACGAGCAGGACCGAGCCAGCTaGCAGAGACCACAGGTGGGCTTCCTCATCAGGTACATGGGCCAG +
Preference number: 1 (lower is better)
Translates to: RGRAGQRQHEQDRAS*QRPQVGFLIRYMGQ
Trigger: CTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTGCTGTCTCTGCCCTGCACGACCCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp GGGTGTGTCCAGAGTCGTGTGCTGGCCAGAGTGGTCACCTCCACCTaGTCCTCGGGCAGCTCCGACTTGGGGATACACTTGGTGGCCCCC +
Preference number: 1 (lower is better)
Translates to: GCVQSRVLARVVTST*SSGSSDLGIHLVAP
Trigger: GGGGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp GGCCCTCGTCACGCTCCAGTACTGCATGGAGGCTGGGCGAGCCTCTaGTGCTTCGGAAGCCTGAGGAGCGGCGTGAGTCGAAGCTGTACA +
Preference number: 1 (lower is better)
Translates to: GPRHAPVLHGGWASL*CFGSLRSGVSRSCT
Trigger: TGTACAGCTTCGACTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGCAGTACTGGAGCGTGACGAGGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp GCGGACCCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTaGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTGAGTGGT +
Preference number: 1 (lower is better)
Translates to: ADPLFSSNAPGPETI*PLGASPQSYWALSG
Trigger: ACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGGGTCCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp GCGAGCCAGGAAGCCAGGGAGTGGCAGGTAGGTAGTCAGGCCCAGTaGCCAGGACCCATGAAGATAAGGGGCACCAGGCAAAGAAGGGGC +
Preference number: 1 (lower is better)
Translates to: ASQEAREWQVGSQAQ*PGPMKIRGTRQRRG
Trigger: GCCCCTTCTTTGCCTGGTGCCCCTTATCTTCATGGGTCCTGGCCACTGGGCCTGACTACCTACCTGCCACTCCCTGGCTTCCTGGCTCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp TGCATATGGAAGTCGCCCAGCTCCCTGGGAGGACAGGCCAGCGCATaGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: CIWKSPSSLGGQASA*LGELVLRVWGQCVC
Trigger: ACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp CCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCAGCTCCCTaGGAGGACAGGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGG +
Preference number: 1 (lower is better)
Translates to: PGCSLLVAYGSRPAP*EDRPAHGWESLCCG
Trigger: CCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp AGAGACAGCACGAGCAGGACCGAGCCAGCTGGCAGAGACCACAGGTaGGCTTCCTCATCAGGTACATGGGCCAGCCATAGGCGGCTAGGG +
Preference number: 1 (lower is better)
Translates to: RDSTSRTEPAGRDHR*ASSSGTWASHRRLG
Trigger: CCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTGCTGTCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp GACTCTGCAGCCAGGGGTGAGGTCACAGGAGTGTCCACCACCCTTTaGATGGCCAGAGTCCTGGGGGTAGAAGGCGAGCCAGGAAGCCAG +
Preference number: 1 (lower is better)
Translates to: DSAARGEVTGVSTTL*MARVLGVEGEPGSQ
Trigger: CTGGCTTCCTGGCTCGCCTTCTACCCCCAGGACTCTGGCCATTCAAAGGGTGGTGGACACTCCTGTGACCTCACCCCTGGCTGCAGAGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 90 bp CCGAAAGGGCGATGGTCAAATCACTGGGGTGTGTCCAGAGTCGTGTaGTGGCCAGAGTGGTCACCTCCACCTGATCCTCGGGCAGCTCCG +
Preference number: 1 (lower is better)
Translates to: PKGRWSNHWGVSRVV*WPEWSPPPDPRAAP
Trigger: CGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCGCCCTTTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp CTTCAATGGTTGCACTTGGTGGTCGCTCAGGAGTCACACCCCCGCTaGCTAGAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTGCTTGG +
Preference number: 1 (lower is better)
Translates to: LQWLHLVVAQESHPR*LEPPPGVGCPVSAW
Trigger: CCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGGGGGTGTGACTCCTGAGCGACCACCAAGTGCAACCATTGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp GTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTaGATATGGAAGTCGCCCAGCTCCCTGGGAGGACAGGCCAGCGCA +
Preference number: 1 (lower is better)
Translates to: VECRGFMGAWLFATS*IWKSPSSLGGQASA
Trigger: TGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp TGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATaGAAGTCGCCCAGCTCCCTGGGAGGACAGGCCAGCGCATGGCTG +
Preference number: 1 (lower is better)
Translates to: CRGFMGAWLFATSCI*KSPSSLGGQASAWL
Trigger: CAGCCATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp TCCGGGTGCAACAGAGGAACACTTTTAGACGGCGGGACCAGCTGGTaGCCTGACCCTCCTCTAACCGGTGCCGCAGGTTGTAAGTCCGCA +
Preference number: 1 (lower is better)
Translates to: SGCNRGTLLDGGTSW*PDPPLTGAAGCKSA
Trigger: TGCGGACTTACAACCTGCGGCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTaGGAAGGAGCTGGTGGCCACTGCCAAGTGCTAGCGTGCCGAGAT +
Preference number: 1 (lower is better)
Translates to: GPEWLLGTHKALSSG*EGAGGHCQVLACRD
Trigger: ATCTCGGCACGCTAGCACTTGGCAGTGGCCACCAGCTCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp GACAGCAGCCGGCCCTCAGAGAAGCCCTCCAGACTCATCTCAGACTaGGACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGC +
Preference number: 1 (lower is better)
Translates to: DSSRPSEKPSRLISD*DLLLTLLLRCSVAG
Trigger: GCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTCTCAGTCTGAGATGAGTCTGGAGGGCTTCTCTGAGGGCCGGCTGCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp AGTGCTTGGACAGACTGTCGGCTGCCAGCAGCTCTGTGCGTGAGCTaGGGGACGGGTTCTCCTCGGGAATGGCCGGGTCGATGTAAAACA +
Preference number: 1 (lower is better)
Translates to: SAWTDCRLPAALCVS*GTGSPREWPGRCKT
Trigger: TGTTTTACATCGACCCGGCCATTCCCGAGGAGAACCCGTCCCTCAGCTCACGCACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp TCCAGGTTGAAGAGGCTGTCAATGAACTCGGCGAATTCTAGCACCTaGGGGCTGGGTGAGTCCCCCAGGCGCCCATTGTGCAGTGCCAGC +
Preference number: 1 (lower is better)
Translates to: SRLKRLSMNSANSST*GLGESPRRPLCSAS
Trigger: GCTGGCACTGCACAATGGGCGCCTGGGGGACTCACCCAGCCCTCAGGTGCTAGAATTCGCCGAGTTCATTGACAGCCTCTTCAACCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp TTGGAGCCCAGACCCAGAAAGGAGCTAGGCATCCAGGAGAGCAAGTaGGCAGAGGCATGTTTGGTTTCAGACCCCAGGGCCCAGAGCTGC +
Preference number: 1 (lower is better)
Translates to: LEPRPRKELGIQESK*AEACLVSDPRAQSC
Trigger: GCAGCTCTGGGCCCTGGGGTCTGAAACCAAACATGCCTCTGCCCACTTGCTCTCCTGGATGCCTAGCTCCTTTCTGGGTCTGGGCTCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp TTGTCCGGGTGCAACAGAGGAACACTTTTAGACGGCGGGACCAGCTaGTGGCCTGACCCTCCTCTAACCGGTGCCGCAGGTTGTAAGTCC +
Preference number: 1 (lower is better)
Translates to: LSGCNRGTLLDGGTS*WPDPPLTGAAGCKS
Trigger: GGACTTACAACCTGCGGCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp TGGTCAAATCACTGGGGTGTGTCCAGAGTCGTGTGCTGGCCAGAGTaGTCACCTCCACCTGATCCTCGGGCAGCTCCGACTTGGGGATAC +
Preference number: 1 (lower is better)
Translates to: WSNHWGVSRVVCWPE*SPPPDPRAAPTWGY
Trigger: GTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp AGAGCGAGATGCCAGAGGAGGGTTCAGCAGATCCTGCAAAGAGCCTaGGGGGCTTGGGTACCAGGTTGGGCTCAAACTGAGCCCGAAGCA +
Preference number: 1 (lower is better)
Translates to: RARCQRRVQQILQRA*GAWVPGWAQTEPEA
Trigger: TGCTTCGGGCTCAGTTTGAGCCCAACCTGGTACCCAAGCCCCCCAGGCTCTTTGCAGGATCTGCTGAACCCTCCTCTGGCATCTCGCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp AGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTaGGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGA +
Preference number: 1 (lower is better)
Translates to: RPFGLWEPLPKATGP*VVVRYPQGLELWLG
Trigger: TCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 90 bp CAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGACGTCATaGCGCCCATACAGAGGAGTCAGGCTGAGGGCTGAGGACCATCCA +
Preference number: 1 (lower is better)
Translates to: QEASLPSARPRTETS*RPYRGVRLRAEDHP
Trigger: TGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 90 bp GACCATGCTTCCAAGGAGACAAGGGCACAAGGGTGGGCAGCTGCTTaGCTGCACACCCCAGTGGCTGGCTTATCCCAAGGCTTCACTTCA +
Preference number: 1 (lower is better)
Translates to: DHASKETRAQGWAAA*LHTPVAGLSQGFTS
Trigger: TGAAGTGAAGCCTTGGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGTCTCCTTGGAAGCATGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 90 bp ATGTCATTGTTTGCCTCGTCCAGCACCGCATTGCGTTTGGCTCGCTaGCGCTGTCTAAGCAGCACCAGGCCAGCAATGATGTCGGAGGGC +
Preference number: 1 (lower is better)
Translates to: MSLFASSSTALRLAR*RCLSSTRPAMMSEG
Trigger: GCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAGGCAAACAATGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp CATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTGAGTaGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGA +
Preference number: 1 (lower is better)
Translates to: HLASGSLSPKLLGPE*LLGTHKALSSGWEG
Trigger: TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp GAGCCAGCTGGCAGAGACCACAGGTGGGCTTCCTCATCAGGTACATaGGCCAGCCATAGGCGGCTAGGGCAAAGAGCATGTAGTAGCAGA +
Preference number: 1 (lower is better)
Translates to: EPAGRDHRWASSSGT*ASHRRLGQRACSSR
Trigger: TCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp CGCCCATACAGAGGAGTCAGGCTGAGGGCTGAGGACCATCCAACCTaGCATCTCCTCCCTGTTACCAAAGCCACCCCTGCTTTTCCCAGA +
Preference number: 1 (lower is better)
Translates to: RPYRGVRLRAEDHPT*HLLPVTKATPAFPR
Trigger: TCTGGGAAAAGCAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 90 bp GACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCAGGCTaGGGGCTGAGGACCATCCAACCTGACATCTCCTCCCTGTTACCA +
Preference number: 1 (lower is better)
Translates to: DPEQRRHAAHTEESG*GLRTIQPDISSLLP
Trigger: TGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp GGGGTTAGAGTAAAGACTCAGGCCCAGATGCCAGGAATCATGAGTTaGTCAGGGAAACCTAGGCAGCCCAGAGAGGCTGGGAGTGGGGCT +
Preference number: 1 (lower is better)
Translates to: GVRVKTQAQMPGIMS*SGKPRQPREAGSGA
Trigger: AGCCCCACTCCCAGCCTCTCTGGGCTGCCTAGGTTTCCCTGACCAACTCATGATTCCTGGCATCTGGGCCTGAGTCTTTACTCTAACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp GTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATGGGAGCCTaGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCAGCTCCCTG +
Preference number: 1 (lower is better)
Translates to: VMGEWHVECRGFMGA*LFATSCIWKSPSSL
Trigger: CAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp AGGATGGTTGTGAACCACGTGGATGATGCGGCCAGGTGGGTAGAGTaGGGTGCTAGCCGAAAGGGCGATGGTCAAATCACTGGGGTGTGT +
Preference number: 1 (lower is better)
Translates to: RMVVNHVDDAARWVE*GASRKGDGQITGVC
Trigger: ACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 90 bp CTGCTCAGCAGGATGGTTGTGAACCACGTGGATGATGCGGCCAGGTaGGTAGAGTGGGGTGCTAGCCGAAAGGGCGATGGTCAAATCACT +
Preference number: 1 (lower is better)
Translates to: LLSRMVVNHVDDAAR*VEWGASRKGDGQIT
Trigger: AGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCTGCTGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp AACAGAGACGTCATGCCGCCCATACAGAGGAGTCAGGCTGAGGGCTaGGGACCATCCAACCTGACATCTCCTCCCTGTTACCAAAGCCAC +
Preference number: 1 (lower is better)
Translates to: NRDVMPPIQRSQAEG*GPSNLTSPPCYQSH
Trigger: GTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGACGTCTCTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 90 bp GGACAGGACCATCTCCTGCTCCAACTTCTTCTTGATGTACTCAGCTaGGAGTACCATGCCCTTGTGGCCCAACCAGGTGCCTCTGTGTCC +
Preference number: 1 (lower is better)
Translates to: GQDHLLLQLLLDVLS*EYHALVAQPGASVS
Trigger: GGACACAGAGGCACCTGGTTGGGCCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp CCCCTCCATGACCACATAGGGCAGGTGCTCATGCAGCATGGCTGGTaGGATGATCACCTCGTTAAAGGCTTTATTGTCGCCCCAGATGGC +
Preference number: 1 (lower is better)
Translates to: PLHDHIGQVLMQHGW*DDHLVKGFIVAPDG
Trigger: GCCATCTGGGGCGACAATAAAGCCTTTAACGAGGTGATCATCTCACCAGCCATGCTGCATGAGCACCTGCCCTATGTGGTCATGGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp AGGCGATTTCTGAGTAGGCATCTGACTGGGAATCCTTTGTCCGGGTaGAACAGAGGAACACTTTTAGACGGCGGGACCAGCTGGTGGCCT +
Preference number: 1 (lower is better)
Translates to: RRFLSRHLTGNPLSG*NRGTLLDGGTSWWP
Trigger: AGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCAGATGCCTACTCAGAAATCGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 90 bp GAGCTCGGGAGTGAGGTCTACCTCGGTGGGGCTCACCATGACCTTTaGAGCAGACAGCAGCGCTGTCTTTCCTTTGTTGTAATTCTCCAG +
Preference number: 1 (lower is better)
Translates to: ELGSEVYLGGAHHDL*SRQQRCLSFVVILQ
Trigger: CTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp CTCTGGTCCTTAGGTCCCACTCAGAAGGGAGGACAACTAAATACATaGCTGGGAGTTGGGGCTTACGAACCCAGGACACAACCTGAGCCA +
Preference number: 1 (lower is better)
Translates to: LWSLGPTQKGGQLNT*LGVGAYEPRTQPEP
Trigger: TGGCTCAGGTTGTGTCCTGGGTTCGTAAGCCCCAACTCCCAGTCATGTATTTAGTTGTCCTCCCTTCTGAGTGGGACCTAAGGACCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 90 bp TCAGGTCAGTCAGGGCATCCTTGGGGGACAGTGTTCCCCGGATACTaGTCACCACTTTCTTCTTGTCATGGTCCACAGCTACGTAGAAGG +
Preference number: 1 (lower is better)
Translates to: SGQSGHPWGTVFPGY*SPLSSCHGPQLRRR
Trigger: CCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGGATGCCCTGACTGACCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 90 bp AAATACATGACTGGGAGTTGGGGCTTACGAACCCAGGACACAACCTaGGCCAAGCCCAGCAGATTCTGTAAACACATACAGCACTGCGGG +
Preference number: 1 (lower is better)
Translates to: KYMTGSWGLRTQDTT*AKPSRFCKHIQHCG
Trigger: CCCGCAGTGCTGTATGTGTTTACAGAATCTGCTGGGCTTGGCTCAGGTTGTGTCCTGGGTTCGTAAGCCCCAACTCCCAGTCATGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 90 bp TCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTaGAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATA +
Preference number: 1 (lower is better)
Translates to: SYIRYKKVMGEWHVE*RGFMGAWLFATSCI
Trigger: TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGTATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 90 bp ATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTaGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTT +
Preference number: 1 (lower is better)
Translates to: IFHTLGTKRSWENGT*SAEGSWEPGCSLLV
Trigger: AACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp CTAGCACCTGAGGGCTGGGTGAGTCCCCCAGGCGCCCATTGTGCAGTGCCAGCTGGTGCCCGCCGGGACTaGAGCTCTGCTGCCAGTCGC +
Preference number: 2 (lower is better)
Translates to: LAPEGWVSPPGAHCAVPAGARRD*SSAASR
Trigger: GCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGCACC...AGCTGGCACTGCACAATGGGCGCCTGGGGGACTCACCCAGCCCTCAGGTGCTAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCCTGGGGGTCCTAGGCTaGGGTAGGGATGCGGACCCC +
Preference number: 2 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPLGVLG*GRDADP
Trigger: GGGGTCCGCATCCCTACCTCAGCCTAGGACCCCCAG...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGGCTAGGCTGAGGCACTaGCTCGGCAGGGGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVARLRH*LGRGQG
Trigger: ACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGCAGCTCCAGGGCCCACTGCGGGCCACCTTaGTGGGGGTCACCCCAGGGG +
Preference number: 2 (lower is better)
Translates to: DLLLTLLLRCSVAGSSRAHCGPP*WGSPQG
Trigger: CCCCTGGGGTGACCCCCACCAAGGTGGCCCGCAGTG...GGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGCTGAGAGGCTCTCCATaGTGGCCAGTGGTGCCCGCC +
Preference number: 2 (lower is better)
Translates to: AWRLGEPLMLRKPEERRELRGSP*WPVVPA
Trigger: GGCGGGCACCACTGGCCACCATGGAGAGCCTCTCAG...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 90 bp CCGCTGCCTAGAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTGCTaGGACAGACTGTCGGCTGCCAGCAGCTCTGTGCGTGAGCTGAGG +
Preference number: 2 (lower is better)
Translates to: PLPRAASRGWVSCEC*DRLSAASSSVRELR
Trigger: CCTCAGCTCACGCACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp AGCTCTACGGGGTCTTGTCGGGCTGCTGATGCAGCAGCCACTGGGGACAGCAGCAAGAAGGGGCATCCCTaGCCCCACCTCCCTTCGGGG +
Preference number: 2 (lower is better)
Translates to: SSTGSCRAADAAATGDSSKKGHP*PHLPSG
Trigger: CCCCGAAGGGAGGTGGGGTCAGGGATGCCCCTTCTT...GCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTGGGCAGCTGCTTGCCTaGACACCCCAGTGGCTGGCT +
Preference number: 2 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSGQLLA*TPQWLA
Trigger: AGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCC...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCGCCTTGAGCTCTGGCTaGGAAGGAGCTGGTGGCCAC +
Preference number: 2 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPALSSG*EGAGGH
Trigger: GTGGCCACCAGCTCCTTCCCAGCCAGAGCTCAAGGC...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTAGCAGGCACCAGATCTaGGGGGAGAGTGGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSSRHQI*GESGQG
Trigger: GCCCTGGCCACTCTCCCCCCAGATCTGGTGCCTGCT...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp AAGGGGACGTGCATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTGGCGGGACCAGCTGGTaGCCTGACCCTCCTCTAACC +
Preference number: 2 (lower is better)
Translates to: KGTCIMPTLLGSGREGWAGGTSW*PDPPLT
Trigger: GGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCC...AGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGATGCACGTCCCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GTCCAGCACCGCATTGCGTTTGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCGACGGCGGGACCAGCTaGTGGCCTGACCCTCCTCTA +
Preference number: 2 (lower is better)
Translates to: VQHRIAFGSLPLSKQHQADGGTS*WPDPPL
Trigger: TAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTC...GGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTAGCACCTGAGGGCTGGGTGAGTCCCCCAGGCGCCCATTGTGCAGTGCCAGCTCGGGCAGCTCCGACTTaGGGATACACTTGGTGGCCC +
Preference number: 2 (lower is better)
Translates to: LAPEGWVSPPGAHCAVPARAAPT*GYTWWP
Trigger: GGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCG...AGCTGGCACTGCACAATGGGCGCCTGGGGGACTCACCCAGCCCTCAGGTGCTAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGCAGCTCCAGGGCCTGGTGGCTCTCAGCTTaGCGAAGGTGCGGCCCGTGG +
Preference number: 2 (lower is better)
Translates to: DLLLTLLLRCSVAGSSRAWWLSA*RRCGPW
Trigger: CCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCA...GGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCGGCTGGGCGAGCCTCTaGTGCTTCGGAAGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: PLFSSNAPGPETIWPLGAGWASL*CFGSLR
Trigger: CCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCC...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGGGCTTGGTGCTCCGCTaGAGGACATCCAGAAGCTGC +
Preference number: 2 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVGLVLR*RTSRSC
Trigger: GCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCC...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GTCCAGCACCGCATTGCGTTTGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCGCCTTGAGCTCTGGCTaGGAAGGAGCTGGTGGCCAC +
Preference number: 2 (lower is better)
Translates to: VQHRIAFGSLPLSKQHQAALSSG*EGAGGH
Trigger: GTGGCCACCAGCTCCTTCCCAGCCAGAGCTCAAGGC...GGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGGGGTCAGGCGGGACACCCAAGGCCTTGAGCTCTaGCTGGGAAGGAGCTGGTGG +
Preference number: 2 (lower is better)
Translates to: GPELPRHGGVIEGVRRDTQGLEL*LGRSWW
Trigger: CCACCAGCTCCTTCCCAGCCAGAGCTCAAGGCCTTG...GGTGTCCCGCCTGACCCCTTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp AGCTCTACGGGGTCTTGTCGGGCTGCTGATGCAGCAGCCACTGGGGACAGCAGCGGGCCTGAGACCATTTaGCCTCTGGGAGCCTCTCCC +
Preference number: 2 (lower is better)
Translates to: SSTGSCRAADAAATGDSSGPETI*PLGASP
Trigger: GGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCC...GCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCAGTCGCCCAGCTCCCTaGGAGGACAGGCCAGCGCAT +
Preference number: 2 (lower is better)
Translates to: PLFSSNAPGPETIWPLGASRPAP*EDRPAH
Trigger: ATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACT...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGCAGTCAGGGCATCCTTaGGGGACAGTGTTCCCCGGA +
Preference number: 2 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVQSGHP*GTVFPG
Trigger: TCCGGGGAACACTGTCCCCCAAGGATGCCCTGACTG...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTGCTGCCAGTCGCTCCTaGGTGGACAGCAGCAGAAGC +
Preference number: 2 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSAASRS*VDSSRS
Trigger: GCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGC...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGAAACACATACAGCACTaGGGGCCACCTTGGTGGGGG +
Preference number: 2 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVKHIQH*GPPWWG
Trigger: CCCCCACCAAGGTGGCCCGCAGTGCTGTATGTGTTT...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGCTAGGCTGAGGCACTaGCTCGGCAGGGGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATARLRH*LGRGQG
Trigger: ACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GTCCAGCACCGCATTGCGTTTGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCCAAGGCCTTGAGCTCTaGCTGGGAAGGAGCTGGTGG +
Preference number: 2 (lower is better)
Translates to: VQHRIAFGSLPLSKQHQAQGLEL*LGRSWW
Trigger: CCACCAGCTCCTTCCCAGCCAGAGCTCAAGGCCTTG...GGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp AAGGGGACGTGCATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTGGGCAGAGGCATGTTTaGTTTCAGACCCCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: KGTCIMPTLLGSGREGWAGQRHV*FQTPGP
Trigger: GGGCCCTGGGGTCTGAAACCAAACATGCCTCTGCCC...AGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGATGCACGTCCCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTCTTGTGCTGCGGGTCTaGGGACAGTGTGTGTGTGGG +
Preference number: 2 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSLVLRV*GQCVCG
Trigger: CCCACACACACACTGTCCCCAGACCCGCAGCACAAG...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGAGCAAGATTTCCTGTTaGCTGGGGGACTTGGGGCCC +
Preference number: 2 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVSKISC*LGDLGP
Trigger: GGGCCCCAAGTCCCCCAGCCAACAGGAAATCTTGCT...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGTCATCCTGCTTGGTaGGGCTGGCCCCGTGGCCTG +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATGHPAW*GWPRGL
Trigger: CAGGCCACGGGGCCAGCCCCACCAAGCAGGATGACC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCCTGGGGGTCCTAGGCTaGGGTAGGGATGCGGACCCC +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVLGVLG*GRDADP
Trigger: GGGGTCCGCATCCCTACCTCAGCCTAGGACCCCCAG...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GTCCAGCACCGCATTGCGTTTGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCACAGAGGAGTCAGGCTaGGGGCTGAGGACCATCCAA +
Preference number: 2 (lower is better)
Translates to: VQHRIAFGSLPLSKQHQATEESG*GLRTIQ
Trigger: TTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGT...GGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGCAGCTCCAGGGCCGTGTCCACCACCCTTTaGATGGCCAGAGTCCTGGGG +
Preference number: 2 (lower is better)
Translates to: DLLLTLLLRCSVAGSSRAVSTTL*MARVLG
Trigger: CCCCAGGACTCTGGCCATTCAAAGGGTGGTGGACAC...GGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCCGGCAGGGGGCAGGGTaGCCAGGAGTCTGTTGTGGG +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVRQGAG*PGVCCG
Trigger: CCCACAACAGACTCCTGGTCACCCTGCCCCCTGCCG...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGGGGTCAGGCGGGACACCGTGGCCAGGGCAAGGTaGCAACTTGAACTACGTGTG +
Preference number: 2 (lower is better)
Translates to: GPELPRHGGVIEGVRRDTVARAR*QLELRV
Trigger: CACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCAC...GGTGTCCCGCCTGACCCCTTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGGGAGTGAAGGGGACGTaGATCATGCCCACCCTTCTA +
Preference number: 2 (lower is better)
Translates to: AWRLGEPLMLRKPEERREGVKGT*IMPTLL
Trigger: TAGAAGGGTGGGCATGATGCACGTCCCCTTCACTCC...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCAGACCATTTGGCCTCTaGGAGCCTCTCCCCAAAGCT +
Preference number: 2 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPRPFGL*EPLPKA
Trigger: AGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCT...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTAGCAGGCACCAGATCTaGGGGGAGAGTGGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATSRHQI*GESGQG
Trigger: GCCCTGGCCACTCTCCCCCCAGATCTGGTGCCTGCT...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGCACTGCGGGCCACCTTaGTGGGGGTCACCCCAGGGG +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGHCGPP*WGSPQG
Trigger: CCCCTGGGGTGACCCCCACCAAGGTGGCCCGCAGTG...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGAAGTCCGGATCTTGTCTGTGGCCAGACACTCCTGGCTGCTGAGGCCCGTGGGTCAGCAGGATGGTTGTaGACCACGTGGATGATGCGG +
Preference number: 2 (lower is better)
Translates to: GSPDLVCGQTLLAAEARGSAGWL*TTWMMR
Trigger: CCGCATCATCCACGTGGTTCACAACCATCCTGCTGA...CCCACGGGCCTCAGCAGCCAGGAGTGTCTGGCCACAGACAAGATCCGGACTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCACATGGTGGCCAGTGGTaGCCGCCGGGACTGCAGCTC +
Preference number: 2 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPHGGQW*PPGLQL
Trigger: GAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATG...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCGGTGTTTCTGGTCACTaGCATCCCAGACAGGAAAGC +
Preference number: 2 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPGVSGH*HPRQES
Trigger: GCTTTCCTGTCTGGGATGCCAGTGACCAGAAACACC...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGCGATGGTCAAATCACTaGGGTGTGTCCAGAGTCGTG +
Preference number: 2 (lower is better)
Translates to: AWRLGEPLMLRKPEERRERWSNH*GVSRVV
Trigger: CACGACTCTGGACACACCCCAGTGATTTGACCATCG...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCCCAGTCGCTCCTGGGTaGACAGCAGCAGAAGCTCTA +
Preference number: 2 (lower is better)
Translates to: PLFSSNAPGPETIWPLGAPVAPG*TAAEAL
Trigger: TAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGG...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGAGGCTCTCCATGGTaGCCAGTGGTGCCCGCCGGG +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGRGSPW*PVVPAG
Trigger: CCCGGCGGGCACCACTGGCCACCATGGAGAGCCTCT...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 90 bp TTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTGAGTGGTaGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGAGCT +
Preference number: 2 (lower is better)
Translates to: LASGSLSPKLLGPEW*LGTHKALSSGWEGA
Trigger: AGCTCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGCTGAGGACCATCCAACCTGACATCTCCTCCCTGTTACCAAAGCCACCCCTGCAATGCTCCAGGGCCTaGGACCATTTGGCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: GLRTIQPDISSLLPKPPLQCSRA*DHLASG
Trigger: CCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTG...CAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCTGGGTTCCTACCTCCTaGACTGCTTCTCCAAAGCAT +
Preference number: 2 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPWVPTS*TASPKH
Trigger: ATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCA...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGATGGTGGCCCCCACGATaGTCCGCCATTTGGGCTTGG +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRWWPPR*SAIWAW
Trigger: CCAAGCCCAAATGGCGGATCATCGTGGGGGCCACCA...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCGTCTTGTCGGGCTGCTaGTGCAGCAGCCACTGGGGA +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVVLSGC*CSSHWG
Trigger: TCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGAC...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GCTGGCCAGAGTGGTCACCTCCACCTGATCCTCGGGCAGCTCCGACTTGGGGATGACAGGAAGCTAGCTTaGCTAGTGCCAGACCCAGAA +
Preference number: 2 (lower is better)
Translates to: AGQSGHLHLILGQLRLGDDRKLA*LVPDPE
Trigger: TTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTC...ATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAGGCGAATCGGGGTCGTaGAGGGCAGAGACAGCACGA +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRGESGS*RAETAR
Trigger: TCGTGCTGTCTCTGCCCTGCACGACCCCGATTCGCC...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTCCTCATCTTATGGGCTaGACACAGTGGGAGTTGGAG +
Preference number: 2 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSPHLMG*TQWELE
Trigger: CTCCAACTCCCACTGTGTCCAGCCCATAAGATGAGG...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACGGACAGGCCAGCGCATaGCTGGGAGAGCTTGTGCTG +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNGQASA*LGELVL
Trigger: CAGCACAAGCTCTCCCAGCCATGCGCTGGCCTGTCC...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCCGAAGGTGCGGCCCGTaGGGTCAAAGACGCAGAGGA +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVRRCGP*GQRRRG
Trigger: TCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCG...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATACAGGACCGAGCCAGCTaGCAGAGACCACAGGTGGGC +
Preference number: 2 (lower is better)
Translates to: HVECRGFMGAWLFATSCIQDRAS*QRPQVG
Trigger: GCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTG...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACGGAGGAAGGAGAGGATaGCGGCTGTGCCTGCTCCCA +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNGGRRG*RLCLLP
Trigger: TGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCC...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp AGCCTGAGGAGCGGCGTGAGTCGAAGCTGTACAGTGACTCAGTGTCTGAGAGGCACCCAGGACACAACCTaGGCCAAGCCCAGCAGATTC +
Preference number: 2 (lower is better)
Translates to: SLRSGVSRSCTVTQCLRGTQDTT*AKPSRF
Trigger: GAATCTGCTGGGCTTGGCTCAGGTTGTGTCCTGGGT...GCCTCTCAGACACTGAGTCACTGTACAGCTTCGACTCACGCCGCTCCTCAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp AGCTCTACGGGGTCTTGTCGGGCTGCTGATGCAGCAGCCACTGGGGACAGCAGCCCCCCAGACCTACCCTaGCAGAGGAAAAGAGATAAA +
Preference number: 2 (lower is better)
Translates to: SSTGSCRAADAAATGDSSPPDLP*QRKRDK
Trigger: TTTATCTCTTTTCCTCTGTCAGGGTAGGTCTGGGGG...GCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGACAGGAAGCTAGCTTaGCTAGTGCCAGACCCAGAA +
Preference number: 2 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQDRKLA*LVPDPE
Trigger: TTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATAGGGCCTGAGACCATTTaGCCTCTGGGAGCCTCTCCC +
Preference number: 2 (lower is better)
Translates to: HVECRGFMGAWLFATSCIGPETI*PLGASP
Trigger: GGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCC...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTACCTCATCTTATGGGCTaGACACAGTGGGAGTTGGAG +
Preference number: 2 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLPHLMG*TQWELE
Trigger: CTCCAACTCCCACTGTGTCCAGCCCATAAGATGAGG...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCACAAGGGCACAAGGGTaGGCAGCTGCTTGCCTGCAC +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVTRAQG*AAACLH
Trigger: GTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGGGCTGGGGTACTTACTaGGTTACTCCTCTGATTGAA +
Preference number: 2 (lower is better)
Translates to: AWRLGEPLMLRKPEERREGWGTY*VTPLIE
Trigger: TTCAATCAGAGGAGTAACCCAGTAAGTACCCCAGCC...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGTCAGGCAGGGAGGGGTaGGCTGGCCCTTCGTGTCTA +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGSGREG*AGPSCL
Trigger: TAGACACGAAGGGCCAGCCCACCCCTCCCTGCCTGA...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTCCCCCAGATGTGGCATaGAGTGAAGGGGACGTGCAT +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATPPDVA*SEGDVH
Trigger: ATGCACGTCCCCTTCACTCCATGCCACATCTGGGGG...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGATCTCGCCCAAAGGCCTaGGACAGGACCATCTCCTGC +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRSRPKA*DRTISC
Trigger: GCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGA...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTCCTGCTCCCAAGGAGTaGCCTACCACAATCAGGCCA +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATPAPKE*PTTIRP
Trigger: TGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGG...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACCGTGGCCTGTGGGGGTaGAAGTCCGGATCTTGTCTG +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNRGLWG*KSGSCL
Trigger: CAGACAAGATCCGGACTTCCACCCCCACAGGCCACG...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAACAGAGGAGTCAGGCTaGGGGCTGAGGACCATCCAA +
Preference number: 2 (lower is better)
Translates to: FGFRPQGPELPRHGGVIETEESG*GLRTIQ
Trigger: TTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGT...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAACCCAGGACACAACCTaGGCCAAGCCCAGCAGATTC +
Preference number: 2 (lower is better)
Translates to: FGFRPQGPELPRHGGVIETQDTT*AKPSRF
Trigger: GAATCTGCTGGGCTTGGCTCAGGTTGTGTCCTGGGT...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAAAGAAGGGGCATCCCTaGCCCCACCTCCCTTCGGGG +
Preference number: 2 (lower is better)
Translates to: GERAGFLPPELLLQSIGKKKGHP*PHLPSG
Trigger: CCCCGAAGGGAGGTGGGGTCAGGGATGCCCCTTCTT...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATGGGTTCCTACCTCCTaGACTGCTTCTCCAAAGCAT +
Preference number: 2 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLWVPTS*TASPKH
Trigger: ATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCA...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGAGTGAAGGGGACGTaGATCATGCCCACCCTTCTA +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATGVKGT*IMPTLL
Trigger: TAGAAGGGTGGGCATGATGCACGTCCCCTTCACTCC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGGAGAGCTTGTGCTaGGGGTCTGGGGACAGTGTG +
Preference number: 2 (lower is better)
Translates to: HVECRGFMGAWLFATSCIWESLC*GSGDSV
Trigger: CACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCA...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGCAGCTCCAGGGCCCACAGGCTATATTCTTaGCAGGTTAGGAGGAGCAGG +
Preference number: 2 (lower is better)
Translates to: DLLLTLLLRCSVAGSSRAHRLYS*QVRRSR
Trigger: CCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTG...GGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGGCCTGCACACCCCAGTaGCTGGCTTATCCCAAGGCT +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGACTPQ*LAYPKA
Trigger: AGCCTTGGGATAAGCCAGCCACTGGGGTGTGCAGGC...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGACAAGGGCACAAGGGTaGGCAGCTGCTTGCCTGCAC +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGTRAQG*AAACLH
Trigger: GTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGACGGAAACCTTCCAGCTaGGAAAGGCCAATCCTGGGG +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRRKPSS*ERPILG
Trigger: CCCCAGGATTGGCCTTTCCCAGCTGGAAGGTTTCCG...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAGTGTGCTGGCCAGAGTaGTCACCTCCACCTGATCCT +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRVCWPE*SPPPDP
Trigger: AGGATCAGGTGGAGGTGACCACTCTGGCCAGCACAC...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATAGTAGCTGGAGGGCAGTaGCAGGAAGCTAGCTTGCCT +
Preference number: 2 (lower is better)
Translates to: HVECRGFMGAWLFATSCIVAGGQ*QEASLP
Trigger: AGGCAAGCTAGCTTCCTGTCACTGCCCTCCAGCTAC...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGGACAACTAAATACATaGCTGGGAGTTGGGGCTTAC +
Preference number: 2 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQGQLNT*LGVGAY
Trigger: GTAAGCCCCAACTCCCAGTCATGTATTTAGTTGTCC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCACGGCAGGGGGCAGGGTaGCCAGGAGTCTGTTGTGGG +
Preference number: 2 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSRQGAG*PGVCCG
Trigger: CCCACAACAGACTCCTGGTCACCCTGCCCCCTGCCG...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAAGATGTGGCATGGAGTaGAGGGGACGTGCATCATGC +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRRCGME*RGRASC
Trigger: GCATGATGCACGTCCCCTTCACTCCATGCCACATCT...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGTGTGAACCACGTGGATaGTGCGGCCAGGTGGGTAGA +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGCEPRG*CGQVGR
Trigger: TCTACCCACCTGGCCGCATCATCCACGTGGTTCACA...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAATGTAAGTCCGCAGATTaGGCTGCCTCCTCTTGGTGG +
Preference number: 2 (lower is better)
Translates to: FGFRPQGPELPRHGGVIECKSAD*AASSWW
Trigger: CCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACA...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp AGCCTGAGGAGCGGCGTGAGTCGAAGCTGTACAGTGACTCAGTGTCTGAGAGGCTGGGGACAAGGTCTTTaGCCAGAACCACAGCAGTCA +
Preference number: 2 (lower is better)
Translates to: SLRSGVSRSCTVTQCLRGWGQGL*PEPQQS
Trigger: TGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCA...GCCTCTCAGACACTGAGTCACTGTACAGCTTCGACTCACGCCGCTCCTCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACTCCTCATCAGGTACATaGGCCAGCCATAGGCGGCTA +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNSSSGT*ASHRRL
Trigger: TAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGA...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCGGCAGAGACCACAGGTaGGCTTCCTCATCAGGTACA +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVGRDHR*ASSSGT
Trigger: TGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCC...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 90 bp AAAGCCAAGATGTCATTGTTTGCCTCGTCCAGCACCGCATTGCGTTaGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCAGCAATGATG +
Preference number: 2 (lower is better)
Translates to: KAKMSLFASSSTALR*ARCRCLSSTRPAMM
Trigger: CATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAGGCAAACAATGACATCTTGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGTGTCCACCACCCTTTaGATGGCCAGAGTCCTGGGG +
Preference number: 2 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQVSTTL*MARVLG
Trigger: CCCCAGGACTCTGGCCATTCAAAGGGTGGTGGACAC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCAAGGTGTAGTACTGTGTaGGCCAGACGATGCCCACGA +
Preference number: 2 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPRCSTV*ARRCPR
Trigger: TCGTGGGCATCGTCTGGCTCACACAGTACTACACCT...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GCTGGCCAGAGTGGTCACCTCCACCTGATCCTCGGGCAGCTCCGACTTGGGGATAGAATACTCTACTTTTaGCCCCTCATCTTATGGGCT +
Preference number: 2 (lower is better)
Translates to: AGQSGHLHLILGQLRLGDRILYF*PLILWA
Trigger: AGCCCATAAGATGAGGGGCCAAAAGTAGAGTATTCT...ATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACAGATGGCAAAGTATGTaGGCTCCTCCTGCTCACAGC +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNRWQSM*APPAHS
Trigger: GCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCT...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCAGACAGGGTTTTGGATaGCTTCTTTCTTCCCAGGGC +
Preference number: 2 (lower is better)
Translates to: LPSARPRTETSCRPYRGVRQGFG*LLSSQG
Trigger: GCCCTGGGAAGAAAGAAGGCATCCAAAACCCTGTCT...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp AGCAATGATGTCGGAGGGCACGATGTCGAGGTCACGGAAAAATTCAGCAAAGAGGTCCGCAGATTGCGCTaGCTCCTCTTGGTGGCTCTC +
Preference number: 2 (lower is better)
Translates to: SNDVGGHDVEVTEKFSKEVRRLR*LLLVAL
Trigger: GAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGAC...CTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCAGAATACTCTACTTTTaGCCCCTCATCTTATGGGCT +
Preference number: 2 (lower is better)
Translates to: PLFSSNAPGPETIWPLGARILYF*PLILWA
Trigger: AGCCCATAAGATGAGGGGCCAAAAGTAGAGTATTCT...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGAGTCTGTTGTGGGGTaGGGGAGTCACAGAGTCAGG +
Preference number: 2 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQESVVG*GSHRVR
Trigger: CCTGACTCTGTGACTCCCCCACCCCACAACAGACTC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGCTGGGGTACTTACTaGGTTACTCCTCTGATTGAA +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATGWGTY*VTPLIE
Trigger: TTCAATCAGAGGAGTAACCCAGTAAGTACCCCAGCC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGTACAAAAAGGTCATaGGAGAATGGCACGTGGAGT +
Preference number: 2 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATGTKRS*ENGTWS
Trigger: ACTCCACGTGCCATTCTCCCATGACCTTTTTGTACC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACTATTGTCGCCCCAGATaGCAAAGTATGTGGGCTCCT +
Preference number: 2 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNYCRPR*QSMWAP
Trigger: AGGAGCCCACATACTTTGCCATCTGGGGCGACAATA...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 90 bp CTGGGGACAAGGTCTTTGCCCAGAACCACAGCAGTCACAAACTCTTaGGAGTATTCCATAGCATCCTCACTTAGCAGGCCTCCTGGTGGG +
Preference number: 2 (lower is better)
Translates to: LGTRSLPRTTAVTNS*EYSIASSLSRPPGG
Trigger: CCCACCAGGAGGCCTGCTAAGTGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCACAATGCTCCAGGGCCTaGGACCATTTGGCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSQCSRA*DHLASG
Trigger: CCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTG...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCACTTGATGTACTCAGCTaGGAGTACCATGCCCTTGTG +
Preference number: 2 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPLDVLS*EYHALV
Trigger: CACAAGGGCATGGTACTCTCAGCTGAGTACATCAAG...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAGTGGCCAGGGCAAGGTaGCAACTTGAACTACGTGTG +
Preference number: 2 (lower is better)
Translates to: GERAGFLPPELLLQSIGKVARAR*QLELRV
Trigger: CACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCAC...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATGTGGCCCAACCAGGTaGCTCTGTGTCCCTCCACAG +
Preference number: 2 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSCGPTR*LCVPPQ
Trigger: CTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACA...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGCACAGGCTATATTCTTaGCAGGTTAGGAGGAGCAGG +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGHRLYS*QVRRSR
Trigger: CCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTG...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCAGGTACTTGGTGTTTCTaGTCACTGGCATCCCAGACA +
Preference number: 2 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPGTWCF*SLASQT
Trigger: TGTCTGGGATGCCAGTGACCAGAAACACCAAGTACC...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 90 bp TCATGCAGCATGGCTGGTGAGATGATCACCTCGTTAAAGGCTTTATaGTCGCCCCAGATGGCAAAGTATGTGGGCTCCTCCTGCTCACAG +
Preference number: 2 (lower is better)
Translates to: SCSMAGEMITSLKAL*SPQMAKYVGSSCSQ
Trigger: CTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGGGCGACAATAAAGCCTTTAACGAGGTGATCATCTCACCAGCCATGCTGCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGGGACAACTAAATACATaGCTGGGAGTTGGGGCTTAC +
Preference number: 2 (lower is better)
Translates to: GRVARARCQLELRVRICGGQLNT*LGVGAY
Trigger: GTAAGCCCCAACTCCCAGTCATGTATTTAGTTGTCC...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAGCTCCAACTTCTTCTTaGTGTACTCAGCTGAGAGTA +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRAPTSS*CTQLRV
Trigger: TACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGC...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAATCTCAGGCACCATCATaGAGTAGAGGTCCTGGAAGG +
Preference number: 2 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQSQAPS*SRGPGR
Trigger: CCTTCCAGGACCTCTACTGCATGATGGTGCCTGAGA...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCAGGACACAGTGGGAGTTaGAGCCCAGACCCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSGHSGS*SPDPER
Trigger: CCTTTCTGGGTCTGGGCTCCAACTCCCACTGTGTCC...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAAATCCTTTGTCCGGGTaGAACAGAGGAACACTTTTA +
Preference number: 2 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRNPLSG*NRGTLL
Trigger: TAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATT...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATCTCGTGCGAGTTCTTaGGGTCGAGGTACTTGGTGT +
Preference number: 2 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSSRASS*GRGTWC
Trigger: ACACCAAGTACCTCGACCTCAAGAACTCGCACGAGA...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAACCCCACCACCCTCACTaGCACCTGCGGCCTCCTCCT +
Preference number: 2 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEPHHPH*HLRPPP
Trigger: AGGAGGAGGCCGCAGGTGGCAGTGAGGGTGGTGGGG...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGGTACAAAAAGGTCATaGGAGAATGGCACGTGGAGT +
Preference number: 2 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQGTKRS*ENGTWS
Trigger: ACTCCACGTGCCATTCTCCCATGACCTTTTTGTACC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR GCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAGGGTGGGCAGCTGCTTaGCTGCACACCCCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEGWAAA*LHTPVA
Trigger: AGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCC...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCGTACCCACAAGGCCTTaGGCTCTGGCTGGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGVPTRP*ALAGKE
Trigger: CTCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTAC...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCTGTCTTCCTCAATGGTaGCCCCAGGGGCGAATCGGG +
Preference number: 2 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGCLPQW*PQGRIG
Trigger: CCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACA...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAGATGATGCGGCCAGGTaGGTAGAGTGGGGTGCTAGC +
Preference number: 2 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEDDAAR*VEWGAS
Trigger: GCTAGCACCCCACTCTACCCACCTGGCCGCATCATC...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR TCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCAGATGTGGCATGGAGTaGAGGGGACGTGCATCATGC +
Preference number: 2 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGRCGME*RGRASC
Trigger: GCATGATGCACGTCCCCTTCACTCCATGCCACATCT...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp CACGAGCAGGACCGAGCCAGCTGGCAGAGACCACAGGTGGGCTTCCTCATCAGGGCACTGCGGGCCACCTaGGTGGGGGTCACCCCAGGG +
Preference number: 3 (lower is better)
Translates to: HEQDRASWQRPQVGFLIRALRAT*VGVTPG
Trigger: CCCTGGGGTGACCCCCACCAAGGTGGCCCGCAGTGC...CCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp CATGGTGGCCAGTGGTGCCCGCCGGGACTGCAGCTCTaGTGCCAGTCGCTCCTGGGTGGACAGCAGCAGAAG +
Preference number: 3 (lower is better)
Translates to: HGGQWCPPGLQL*CQSLLGGQQQK
Trigger: CTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTaGCCCTTCGTGTCTAGGGCTGAGTCCAAGCCTGCC +
Preference number: 3 (lower is better)
Translates to: AHPSRVRQGGVG*PFVSRAESKPA
Trigger: GGCAGGCTTGGACTCAGCCCTAGACACGAAGGGCCAGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp CAGCAGCAGAAGCTCTACGGGGTCTTGTCGGGCTGCTaGTGCAGCAGCCACTGGGGACAGCAGCCGGCCCTC +
Preference number: 3 (lower is better)
Translates to: QQQKLYGVLSGC*CSSHWGQQPAL
Trigger: GAGGGCCGGCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCTTCTGCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GCCCGCCGGGACTGCAGCTCTGCTGCCAGTCGCTCCTaGGTGGACAGCAGCAGAAGCTCTACGGGGTCTTGT +
Preference number: 3 (lower is better)
Translates to: ARRDCSSAASRS*VDSSRSSTGSC
Trigger: ACAAGACCCCGTAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp ACAGACTGTCGGCTGCCAGCAGCTCTGTGCGTGAGCTaGGGGACGGGTTCTCCTCGGGAATGGCCGGGTCGA +
Preference number: 3 (lower is better)
Translates to: TDCRLPAALCVS*GTGSPREWPGR
Trigger: TCGACCCGGCCATTCCCGAGGAGAACCCGTCCCTCAGCTCACGCACAGAGCTGCTGGCAGCCGACAGTCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp CCAGTGGGCAGAGGTGGGCCCGTGGGCAACGGCTGTTaGTGGAAGATGAGCTCGGGAGTGAGGTCTACCTCG +
Preference number: 3 (lower is better)
Translates to: PVGRGGPVGNGC*WKMSSGVRSTS
Trigger: CGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp TTGCACTTGGTGGTCGCTCAGGAGTCACACCCCCGCTaGCTAGAGCCGCCTCCAGGGGTTGGGTGTCCTGTG +
Preference number: 3 (lower is better)
Translates to: LHLVVAQESHPR*LEPPPGVGCPV
Trigger: CACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGGGGGTGTGACTCCTGAGCGACCACCAAGTGCAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTGCTTaGACAGACTGTCGGCTGCCAGCAGCTCTGTGCGTG +
Preference number: 3 (lower is better)
Translates to: EPPPGVGCPVSA*TDCRLPAALCV
Trigger: CACGCACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GTCACACCCCCGCTGCCTAGAGCCGCCTCCAGGGGTTaGGTGTCCTGTGAGTGCTTGGACAGACTGTCGGCT +
Preference number: 3 (lower is better)
Translates to: VTPPLPRAASRG*VSCECLDRLSA
Trigger: AGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCAGCGGGGGTGTGAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp CACGCTCCAGTACTGCATGGAGGCTGGGCGAGCCTCTaGTGCTTCGGAAGCCTGAGGAGCGGCGTGAGTCGA +
Preference number: 3 (lower is better)
Translates to: HAPVLHGGWASL*CFGSLRSGVSR
Trigger: TCGACTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGCAGTACTGGAGCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp CCTAGAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTaGTTGGACAGACTGTCGGCTGCCAGCAGCTCTGTG +
Preference number: 3 (lower is better)
Translates to: PRAASRGWVSCE*LDRLSAASSSV
Trigger: CACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGGGACCATGCTTCCAAGGAGACAAGGGCACAAGGGTaGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGC +
Preference number: 3 (lower is better)
Translates to: RDHASKETRAQG*AAACLHTPVAG
Trigger: GCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGTCTCCTTGGAAGCATGGTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp ATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTaGGCTGGCCCTTCGTGTCTAGGGCTGAGTCCAAGC +
Preference number: 3 (lower is better)
Translates to: IMPTLLGSGREG*AGPSCLGLSPS
Trigger: GCTTGGACTCAGCCCTAGACACGAAGGGCCAGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp GCAGGGCAGAGACAGCACGAGCAGGACCGAGCCAGCTaGCAGAGACCACAGGTGGGCTTCCTCATCAGGTAC +
Preference number: 3 (lower is better)
Translates to: AGQRQHEQDRAS*QRPQVGFLIRY
Trigger: GTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTGCTGTCTCTGCCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp CACTGGGGTGTGTCCAGAGTCGTGTGCTGGCCAGAGTaGTCACCTCCACCTGATCCTCGGGCAGCTCCGACT +
Preference number: 3 (lower is better)
Translates to: HWGVSRVVCWPE*SPPPDPRAAPT
Trigger: AGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp AAGGGGACGTGCATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTCTGGGCCCTGAGTGGTaGTTAGGTACCCACAAGGCC +
Preference number: 3 (lower is better)
Translates to: KGTCIMPTLLGSGREGWALGPEW*LGTHKA
Trigger: GGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAG...AGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGATGCACGTCCCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GCTCCGCTGCAGGACATCCAGAAGCTGCCGACGGAAACCTTCCAGCTGGGAAAGTCGTCCAGCACCGCATaGCGTTTGGCTCGCTGCCGC +
Preference number: 3 (lower is better)
Translates to: APLQDIQKLPTETFQLGKSSSTA*RLARCR
Trigger: GCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGA...CTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGGACTTGGGGATACACTaGGTGGCCCCCACGATGATC +
Preference number: 3 (lower is better)
Translates to: AWRLGEPLMLRKPEERREDLGIH*VAPTMI
Trigger: GATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTC...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTTGGACACAGTGGGAGTaGGAGCCCAGACCCAGAAAG +
Preference number: 3 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSWTQWE*EPRPRK
Trigger: CTTTCTGGGTCTGGGCTCCAACTCCCACTGTGTCCA...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp GCCAGGGGTGAGGTCACAGGAGTGTCCACCACCCTTTaGATGGCCAGAGTCCTGGGGGTAGAAGGCGAGCCA +
Preference number: 3 (lower is better)
Translates to: ARGEVTGVSTTL*MARVLGVEGEP
Trigger: TGGCTCGCCTTCTACCCCCAGGACTCTGGCCATTCAAAGGGTGGTGGACACTCCTGTGACCTCACCCCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp GCAGATTGCGCTGCCTCCTCTTGGTGGCTCTCAGCTTaGCGAAGGTGCGGCCCGTGGGGTCAAAGACGCAGA +
Preference number: 3 (lower is better)
Translates to: ADCAASSWWLSA*RRCGPWGQRRR
Trigger: TCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp GAGAGGCTGGGAGTGGGGCTAGAGTGGAAGGGACCATaGTTCCAAGGAGACAAGGGCACAAGGGTGGGCAGC +
Preference number: 3 (lower is better)
Translates to: ERLGVGLEWKGP*FQGDKGTRVGS
Trigger: GCTGCCCACCCTTGTGCCCTTGTCTCCTTGGAAGCATGGTCCCTTCCACTCTAGCCCCACTCCCAGCCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp CAGCTGAGAGTACCATGCCCTTGTGGCCCAACCAGGTaGCTCTGTGTCCCTCCACAGGGAGGCGCTCAGCAT +
Preference number: 3 (lower is better)
Translates to: QLRVPCPCGPTR*LCVPPQGGAQH
Trigger: ATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAGGGCATGGTACTCTCAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp TGGGAAGGAGCTGGTGGCCACTGCCAAGTGCTAGCGTaGCGAGATGACCAGGTCATCCTGCTTGGTGGGGCT +
Preference number: 3 (lower is better)
Translates to: WEGAGGHCQVLA*RDDQVILLGGA
Trigger: AGCCCCACCAAGCAGGATGACCTGGTCATCTCGGCACGCTAGCACTTGGCAGTGGCCACCAGCTCCTTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp ACGAGCAGGACCGAGCCAGCTGGCAGAGACCACAGGTaGGCTTCCTCATCAGGTACATGGGCCAGCCATAGG +
Preference number: 3 (lower is better)
Translates to: TSRTEPAGRDHR*ASSSGTWASHR
Trigger: CCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGCTGTACAGTGACTCAGTGTCTGAGAGGCTCTCCATaGTGGCCAGTGGTGCCCGCCGGGACTGCAGCTCTG +
Preference number: 3 (lower is better)
Translates to: SCTVTQCLRGSP*WPVVPAGTAAL
Trigger: CAGAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATGGAGAGCCTCTCAGACACTGAGTCACTGTACAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCCATGGCTGGGAGAGCTaGTGCTGCGGGTCTGGGGAC +
Preference number: 3 (lower is better)
Translates to: LPSARPRTETSCRPYRGVHGWES*CCGSGD
Trigger: GTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATG...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp GGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTaGGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTC +
Preference number: 3 (lower is better)
Translates to: GLWEPLPKATGP*VVVRYPQGLEL
Trigger: GAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp TTCTGCCGCGGCTCTGGGAGAGTAGCTGGAGGGCAGTaGCAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGA +
Preference number: 3 (lower is better)
Translates to: FCRGSGRVAGGQ*QEASLPSARPR
Trigger: TCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAGCTACTCTCCCAGAGCCGCGGCAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp CAGAGTCGTGTGCTGGCCAGAGTGGTCACCTCCACCTaGTCCTCGGGCAGCTCCGACTTGGGGATACACTTG +
Preference number: 3 (lower is better)
Translates to: QSRVLARVVTST*SSGSSDLGIHL
Trigger: CAAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp AGGAGACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTaGACACCCCAGTGGCTGGCTTATCCCAAGGCTTCA +
Preference number: 3 (lower is better)
Translates to: RRQGHKGGQLLA*TPQWLAYPKAS
Trigger: TGAAGCCTTGGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGTCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp CCCACGATGATCCGCCATTTGGGCTTGGTGCTCCGCTaGAGGACATCCAGAAGCTGCCGACGGAAACCTTCC +
Preference number: 3 (lower is better)
Translates to: PTMIRHLGLVLR*RTSRSCRRKPS
Trigger: GGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAATGGCGGATCATCGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp CTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTaGCCTCTGGGAGCCTCTCCCCAAAGCTACTGGGCC +
Preference number: 3 (lower is better)
Translates to: LFSSNAPGPETI*PLGASPQSYWA
Trigger: GGCCCAGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp AGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTaGGGTGTCAATCTGAACTGGAACGGAGGGGGTGGC +
Preference number: 3 (lower is better)
Translates to: RACAAGLGTVCV*GVNLNWNGGGG
Trigger: GCCACCCCCTCCGTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp TCGCTACTAGTTGCATATGGAAGTCGCCCAGCTCCCTaGGAGGACAGGCCAGCGCATGGCTGGGAGAGCTTG +
Preference number: 3 (lower is better)
Translates to: SLLVAYGSRPAP*EDRPAHGWESL
Trigger: CAAGCTCTCCCAGCCATGCGCTGGCCTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp TGCAACAGAGGAACACTTTTAGACGGCGGGACCAGCTaGTGGCCTGACCCTCCTCTAACCGGTGCCGCAGGT +
Preference number: 3 (lower is better)
Translates to: CNRGTLLDGGTS*WPDPPLTGAAG
Trigger: ACCTGCGGCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp CCAAGGAGTGGCCTACCACAATCAGGCCATAGTGTTTaGTTCCACGGCCCAGGTCTCGCCCAAAGGCCTGGG +
Preference number: 3 (lower is better)
Translates to: PRSGLPQSGHSV*FHGPGLAQRPG
Trigger: CCCAGGCCTTTGGGCGAGACCTGGGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GGGCTGAGGACCATCCAACCTGACATCTCCTCCCTGTTACCAAAGCCACCCCTGCTGGGCCCTGAGTGGTaGTTAGGTACCCACAAGGCC +
Preference number: 3 (lower is better)
Translates to: GLRTIQPDISSLLPKPPLLGPEW*LGTHKA
Trigger: GGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAG...CAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTTGGGCAGAGGCATGTTaGGTTTCAGACCCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATWAEAC*VSDPRA
Trigger: GGCCCTGGGGTCTGAAACCAAACATGCCTCTGCCCA...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp CAGAGACGTCATGCCGCCCATACAGAGGAGTCAGGCTaGGGGCTGAGGACCATCCAACCTGACATCTCCTCC +
Preference number: 3 (lower is better)
Translates to: QRRHAAHTEESG*GLRTIQPDISS
Trigger: GGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGACGTCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp AAGAGGCTGTCAATGAACTCGGCGAATTCTAGCACCTaGGGGCTGGGTGAGTCCCCCAGGCGCCCATTGTGC +
Preference number: 3 (lower is better)
Translates to: KRLSMNSANSST*GLGESPRRPLC
Trigger: GCACAATGGGCGCCTGGGGGACTCACCCAGCCCTCAGGTGCTAGAATTCGCCGAGTTCATTGACAGCCTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp AGCTTGCCTAGTGCCAGACCCAGAACAGAGACGTCATaGCGCCCATACAGAGGAGTCAGGCTGAGGGCTGAG +
Preference number: 3 (lower is better)
Translates to: SLPSARPRTETS*RPYRGVRLRAE
Trigger: CTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp GGGTCAGGCGGGACACCAAAGAGACAGGGTTTTGGATaGCTTCTTTCTTCCCAGGGCCCTGACTCTGCAGCC +
Preference number: 3 (lower is better)
Translates to: GSGGTPKRQGFG*LLSSQGPDSAA
Trigger: GGCTGCAGAGTCAGGGCCCTGGGAAGAAAGAAGGCATCCAAAACCCTGTCTCTTTGGTGTCCCGCCTGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp CGATGGTCAAATCACTGGGGTGTGTCCAGAGTCGTGTaGTGGCCAGAGTGGTCACCTCCACCTGATCCTCGG +
Preference number: 3 (lower is better)
Translates to: RWSNHWGVSRVV*WPEWSPPPDPR
Trigger: CCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCTGGACACACCCCAGTGATTTGACCATCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp TCTGGGAGCCTCTCCCCAAAGCTACTGGGCCCTGAGTaGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGC +
Preference number: 3 (lower is better)
Translates to: SGSLSPKLLGPE*LLGTHKALSSG
Trigger: GCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp CACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTaGCTGGCTTATCCCAAGGCTTCACTTCACAGGCTA +
Preference number: 3 (lower is better)
Translates to: HKGGQLLACTPQ*LAYPKASLHRL
Trigger: TAGCCTGTGAAGTGAAGCCTTGGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp AACAGAGGAACACTTTTAGACGGCGGGACCAGCTGGTaGCCTGACCCTCCTCTAACCGGTGCCGCAGGTTGT +
Preference number: 3 (lower is better)
Translates to: NRGTLLDGGTSW*PDPPLTGAAGC
Trigger: ACAACCTGCGGCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GGCAGAGACCACAGGTGGGCTTCCTCATCAGGTACATaGGCCAGCCATAGGCGGCTAGGGCAAAGAGCATGT +
Preference number: 3 (lower is better)
Translates to: GRDHRWASSSGT*ASHRRLGQRAC
Trigger: ACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGGATGGTTGTGAACCACGTGGATGATGCGGCCAGGTaGGTAGAGTGGGGTGCTAGCCGAAAGGGCGATGGT +
Preference number: 3 (lower is better)
Translates to: RMVVNHVDDAAR*VEWGASRKGDG
Trigger: ACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCACAACCATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp TGCCAGAGGAGGGTTCAGCAGATCCTGCAAAGAGCCTaGGGGGCTTGGGTACCAGGTTGGGCTCAAACTGAG +
Preference number: 3 (lower is better)
Translates to: CQRRVQQILQRA*GAWVPGWAQTE
Trigger: CTCAGTTTGAGCCCAACCTGGTACCCAAGCCCCCCAGGCTCTTTGCAGGATCTGCTGAACCCTCCTCTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCATTGGTGGCTCTCAGCTaGACGAAGGTGCGGCCCGTG +
Preference number: 3 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPLVALS*TKVRPV
Trigger: CACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAA...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCTTGCGCTGCCTCCTCTaGGTGGCTCTCAGCTTGACG +
Preference number: 3 (lower is better)
Translates to: LPSARPRTETSCRPYRGVLRCLL*VALSLT
Trigger: CGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAA...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATAGGTACCCACAAGGCCTaGAGCTCTGGCTGGGAAGGA +
Preference number: 3 (lower is better)
Translates to: HVECRGFMGAWLFATSCIGTHKA*SSGWEG
Trigger: TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACC...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp AGCTCTACGGGGTCTTGTCGGGCTGCTGATGCAGCAGCCACTGGGGACAGCAGCCAGAATACTCTACTTTaGGCCCCTCATCTTATGGGC +
Preference number: 3 (lower is better)
Translates to: SSTGSCRAADAAATGDSSQNTLL*APHLMG
Trigger: GCCCATAAGATGAGGGGCCAAAAGTAGAGTATTCTG...GCTGCTGTCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GCATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAAGCCTGAGGAGCGGCGTGAGGCAGTCACAAACTCTTaGGAGTATTCCATAGCATCC +
Preference number: 3 (lower is better)
Translates to: AWRLGEPLMLRKPEERREAVTNS*EYSIAS
Trigger: GGATGCTATGGAATACTCCAAAGAGTTTGTGACTGC...CTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp AGAGGAGTCAGGCTGAGGGCTGAGGACCATCCAACCTaGCATCTCCTCCCTGTTACCAAAGCCACCCCTGCT +
Preference number: 3 (lower is better)
Translates to: RGVRLRAEDHPT*HLLPVTKATPA
Trigger: AGCAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp GTCATGCCGCCCATACAGAGGAGTCAGGCTGAGGGCTaGGGACCATCCAACCTGACATCTCCTCCCTGTTAC +
Preference number: 3 (lower is better)
Translates to: VMPPIQRSQAEG*GPSNLTSPPCY
Trigger: GTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCCTCAGCCTGACTCCTCTGTATGGGCGGCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp AGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTaGATATGGAAGTCGCCCAGCTCCCTGGGAGGACAG +
Preference number: 3 (lower is better)
Translates to: RGFMGAWLFATS*IWKSPSSLGGQ
Trigger: CTGTCCTCCCAGGGAGCTGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR GCA 72 bp GATGTAAAACAGGTGGCCCTCGTCACGCTCCAGTACTaGATGGAGGCTGGGCGAGCCTCTGATGCTTCGGAA +
Preference number: 3 (lower is better)
Translates to: DVKQVALVTLQY*MEAGRASDASE
Trigger: TTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGCAGTACTGGAGCGTGACGAGGGCCACCTGTTTTACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGACCCAGAAAGGAGCTAGGCATCCAGGAGAGCAAGTaGGCAGAGGCATGTTTGGTTTCAGACCCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: RPRKELGIQESK*AEACLVSDPRA
Trigger: GGCCCTGGGGTCTGAAACCAAACATGCCTCTGCCCACTTGCTCTCCTGGATGCCTAGCTCCTTTCTGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp TGTTTGGTTCCACGGCCCAGGTCTCGCCCAAAGGCCTaGGACAGGACCATCTCCTGCTCCAACTTCTTCTTG +
Preference number: 3 (lower is better)
Translates to: CLVPRPRSRPKA*DRTISCSNFFL
Trigger: CAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTGGGCCGTGGAACCAAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGGACATCCAGAAGCTGCCGACGGAAACCTTCCAGCTaGGAAAGGCCAATCCTGGGGACAAGGTCTTTGCCC +
Preference number: 3 (lower is better)
Translates to: RTSRSCRRKPSS*ERPILGTRSLP
Trigger: GGGCAAAGACCTTGTCCCCAGGATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp GTGAACCACGTGGATGATGCGGCCAGGTGGGTAGAGTaGGGTGCTAGCCGAAAGGGCGATGGTCAAATCACT +
Preference number: 3 (lower is better)
Translates to: VNHVDDAARWVE*GASRKGDGQIT
Trigger: AGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCATCCACGTGGTTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTACAGAATACTCTACTTTaGGCCCCTCATCTTATGGGC +
Preference number: 3 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLQNTLL*APHLMG
Trigger: GCCCATAAGATGAGGGGCCAAAAGTAGAGTATTCTG...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTTGCTCCAACTTCTTCTaGATGTACTCAGCTGAGAGT +
Preference number: 3 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSCSNFF*MYSAES
Trigger: ACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCA...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp CGGCCCTCAGAGAAGCCCTCCAGACTCATCTCAGACTaGGACTTGCTCCTGACACTGCTGTTGCGATGCTCT +
Preference number: 3 (lower is better)
Translates to: RPSEKPSRLISD*DLLLTLLLRCS
Trigger: AGAGCATCGCAACAGCAGTGTCAGGAGCAAGTCTCAGTCTGAGATGAGTCTGGAGGGCTTCTCTGAGGGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp AGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTaGCTTATCCCAAGGCTTCACTTCACAGGCTATATT +
Preference number: 3 (lower is better)
Translates to: RVGSCLPAHPSG*LIPRLHFTGYI
Trigger: AATATAGCCTGTGAAGTGAAGCCTTGGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp GTAAAGACTCAGGCCCAGATGCCAGGAATCATGAGTTaGTCAGGGAAACCTAGGCAGCCCAGAGAGGCTGGG +
Preference number: 3 (lower is better)
Translates to: VKTQAQMPGIMS*SGKPRQPREAG
Trigger: CCCAGCCTCTCTGGGCTGCCTAGGTTTCCCTGACCAACTCATGATTCCTGGCATCTGGGCCTGAGTCTTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTCCCTTTCCTCAGGAGTaGTGCACATTCATGCACATG +
Preference number: 3 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATPFPQE*CTFMHM
Trigger: CATGTGCATGAATGTGCACAACTCCTGAGGAAAGGG...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGTGGAAGGAGCTGCTCTaGCTGTCCAGGTTGAAGAGG +
Preference number: 3 (lower is better)
Translates to: GRVARARCQLELRVRICGWKELL*LSRLKR
Trigger: CCTCTTCAACCTGGACAGCAAGAGCAGCTCCTTCCA...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp CTGAGTAGGCATCTGACTGGGAATCCTTTGTCCGGGTaGAACAGAGGAACACTTTTAGACGGCGGGACCAGC +
Preference number: 3 (lower is better)
Translates to: LSRHLTGNPLSG*NRGTLLDGGTS
Trigger: GCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCAGATGCCTACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAATGGACACAGTGGGAGTaGGAGCCCAGACCCAGAAAG +
Preference number: 3 (lower is better)
Translates to: GERAGFLPPELLLQSIGKWTQWE*EPRPRK
Trigger: CTTTCTGGGTCTGGGCTCCAACTCCCACTGTGTCCA...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp CATCTCCTGCTCCAACTTCTTCTTGATGTACTCAGCTaGGAGTACCATGCCCTTGTGGCCCAACCAGGTGCC +
Preference number: 3 (lower is better)
Translates to: HLLLQLLLDVLS*EYHALVAQPGA
Trigger: GGCACCTGGTTGGGCCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp CCTGGGACAGGACCATCTCCTGCTCCAACTTCTTCTTaGTGTACTCAGCTGAGAGTACCATGCCCTTGTGGC +
Preference number: 3 (lower is better)
Translates to: PGTGPSPAPTSS*CTQLRVPCPCG
Trigger: GCCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR GCA 72 bp AGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTaGAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACT +
Preference number: 3 (lower is better)
Translates to: RYKKVMGEWHVE*RGFMGAWLFAT
Trigger: AGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp GCTTATCCCAAGGCTTCACTTCACAGGCTATATTCTTaGCAGGTTAGGAGGAGCAGGAGGCAGGCAACGTGC +
Preference number: 3 (lower is better)
Translates to: AYPKASLHRLYS*QVRRSRRQATC
Trigger: GCACGTTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAGCCTTGGGATAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCAGTGACCAGGAGTCTGTaGTGGGGTGGGGGAGTCACA +
Preference number: 3 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSVTRSL*WGGGVT
Trigger: TGTGACTCCCCCACCCCACAACAGACTCCTGGTCAC...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp ACTGGGAGTTGGGGCTTACGAACCCAGGACACAACCTaGGCCAAGCCCAGCAGATTCTGTAAACACATACAG +
Preference number: 3 (lower is better)
Translates to: TGSWGLRTQDTT*AKPSRFCKHIQ
Trigger: CTGTATGTGTTTACAGAATCTGCTGGGCTTGGCTCAGGTTGTGTCCTGGGTTCGTAAGCCCCAACTCCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR TCA 72 bp TCAGGGCATCCTTGGGGGACAGTGTTCCCCGGATACTaGTCACCACTTTCTTCTTGTCATGGTCCACAGCTA +
Preference number: 3 (lower is better)
Translates to: SGHPWGTVFPGY*SPLSSCHGPQL
Trigger: TAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGGATGCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CCA 72 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTaGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCG +
Preference number: 3 (lower is better)
Translates to: TLGTKRSWENGT*SAEGSWEPGCS
Trigger: CGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCGCACTGCGGGCCACCTaGGTGGGGGTCACCCCAGGG +
Preference number: 3 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGALRAT*VGVTPG
Trigger: CCCTGGGGTGACCCCCACCAAGGTGGCCCGCAGTGC...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp CACGTGGAGTGCAGAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATACAAAGAGACAGGGTTTaGGATGCCTTCTTTCTTCCC +
Preference number: 3 (lower is better)
Translates to: HVECRGFMGAWLFATSCIQRDRV*DAFFLP
Trigger: GGGAAGAAAGAAGGCATCCAAAACCCTGTCTCTTTG...TATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTCTGCACTCCACGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAATCTCGTGCGAGTTCTaGAGGTCGAGGTACTTGGTG +
Preference number: 3 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQISCEF*RSRYLV
Trigger: CACCAAGTACCTCGACCTCAAGAACTCGCACGAGAT...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR TCA 72 bp TTAGGTCCCACTCAGAAGGGAGGACAACTAAATACATaGCTGGGAGTTGGGGCTTACGAACCCAGGACACAA +
Preference number: 3 (lower is better)
Translates to: LGPTQKGGQLNT*LGVGAYEPRTQ
Trigger: TTGTGTCCTGGGTTCGTAAGCCCCAACTCCCAGTCATGTATTTAGTTGTCCTCCCTTCTGAGTGGGACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp GTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATaGGAGAATGGCACGTGGAGTGCAGAGGGTTCATGG +
Preference number: 3 (lower is better)
Translates to: VWIFHTLGTKRS*ENGTWSAEGSW
Trigger: CCATGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CCA 72 bp ACCCACAACTCTCCTTGTGCCGGCTGGGGTACTTACTaGGTTACTCCTCTGATTGAAGATTTTTGTCTAATA +
Preference number: 3 (lower is better)
Translates to: THNSPCAGWGTY*VTPLIEDFCLI
Trigger: TATTAGACAAAAATCTTCAATCAGAGGAGTAACCCAGTAAGTACCCCAGCCGGCACAAGGAGAGTTGTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCTTGCAGCCACAACAGTaGTCTTCCTCAATGGTGACC +
Preference number: 3 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGLQPQQ*SSSMVT
Trigger: GGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAA...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR-3UTR CAA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCTCGTTAAAGGCTTTATaGTCGCCCCAGATGGCAAAG +
Preference number: 3 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGSLKAL*SPQMAK
Trigger: CTTTGCCATCTGGGGCGACAATAAAGCCTTTAACGA...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGCATGGTGGCCAGTGGTaGCCGCCGGGACTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVHGGQW*PPGLQL
Trigger: GAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATG...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCCCAGGGCCAGGCCAGTaGGCAGAGGTGGGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: PLFSSNAPGPETIWPLGAPGPGQ*AEVGPW
Trigger: CCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGG...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp CCCTGGGAGGACAGGCCAGCGCATGGCTGGGAGAGCTaGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: PWEDRPAHGWES*CCGSGDSVCVG
Trigger: CCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCCTGTCCTCCCAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CAA 72 bp CTGGCCCCGTGGCCTGTGGGGGTGGAAGTCCGGATCTaGTCTGTGGCCAGACACTCCTGGCTGCTGAGGCCC +
Preference number: 4 (lower is better)
Translates to: LAPWPVGVEVRI*SVARHSWLLRP
Trigger: GGGCCTCAGCAGCCAGGAGTGTCTGGCCACAGACAAGATCCGGACTTCCACCCCCACAGGCCACGGGGCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGGACCAGCTGGTGGCCTaGCCCTCCTCTAACCGGTGC +
Preference number: 4 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVDQLVA*PSSNRC
Trigger: GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTC...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGCCAGTGGGCAGAGGTaGGCCCGTGGGCAACGGCTG +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQASGQR*ARGQRL
Trigger: CAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGACACTCCTGGCTGCTaGGGCCCGTGGGGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQDTPGC*GPWGSG
Trigger: ACCTGACCCCCACGGGCCTCAGCAGCCAGGAGTGTC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTAGGACGAGGTCATCGCTaGCCACAGACCAGCGCCGCC +
Preference number: 4 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLGRGHR*PQTSAA
Trigger: GGCGGCGCTGGTCTGTGGGCAGCGATGACCTCGTCC...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp GACTTGCTCCTGACACTGCTGTTGCGATGCTCTGTGGCAGGCAGCTCCAGGGCCGGACGAGGTCATCGCTaGCCACAGACCAGCGCCGCC +
Preference number: 4 (lower is better)
Translates to: DLLLTLLLRCSVAGSSRAGRGHR*PQTSAA
Trigger: GGCGGCGCTGGTCTGTGGGCAGCGATGACCTCGTCC...GGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAGGAGCAAGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGGTCACGCTCCAGTACTaGATGGAGGCTGGGCGAGCC +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVVTLQY*MEAGRA
Trigger: GGCTCGCCCAGCCTCCATGCAGTACTGGAGCGTGAC...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGGGGTCAGGCGGGACACCTTGAGGGTCGGGTACTaGGGGCGCAGGAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: GPELPRHGGVIEGVRRDTLRVGY*GRRRKE
Trigger: CTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAA...GGTGTCCCGCCTGACCCCTTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTCTGAGAGGCTCTCCATaGTGGCCAGTGGTGCCCGCC +
Preference number: 4 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSLRGSP*WPVVPA
Trigger: GGCGGGCACCACTGGCCACCATGGAGAGCCTCTCAG...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAACTAGCACCTGAGGGCTaGGTGAGTCCCCCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQLAPEG*VSPPGA
Trigger: GGCGCCTGGGGGACTCACCCAGCCCTCAGGTGCTAG...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp GCCAGTGGGCAGAGGTGGGCCCGTGGGCAACGGCTGTaGCTGGAAGATGAGCTCGGGAGTGAGGTCTACCTC +
Preference number: 4 (lower is better)
Translates to: ASGQRWARGQRL*LEDELGSEVYL
Trigger: GAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGTGTGGCCCAACCAGGTaGCTCTGTGTCCCTCCACAG +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVCGPTR*LCVPPQ
Trigger: CTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACA...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp CGCAGATTGCGCTGCCTCCTCTTGGTGGCTCTCAGCTaGACGAAGGTGCGGCCCGTGGGGTCAAAGACGCAG +
Preference number: 4 (lower is better)
Translates to: RRLRCLLLVALS*TKVRPVGSKTQ
Trigger: CTGCGTCTTTGACCCCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 72 bp AGAGCCGCCTCCAGGGGTTGGGTGTCCTGTGAGTGCTaGGACAGACTGTCGGCTGCCAGCAGCTCTGTGCGT +
Preference number: 4 (lower is better)
Translates to: RAASRGWVSCEC*DRLSAASSSVR
Trigger: ACGCACAGAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATGGTGGCCCCCACGATaGTCCGCCATTTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLWWPPR*SAIWAW
Trigger: CCAAGCCCAAATGGCGGATCATCGTGGGGGCCACCA...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGTCTTGTCGGGCTGCTaGTGCAGCAGCCACTGGGGA +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQVLSGC*CSSHWG
Trigger: TCCCCAGTGGCTGCTGCATCAGCAGCCCGACAAGAC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGGCTGAGGACCATCCAACCTGACATCTCCTCCCTGTTACCAAAGCCACCCCTGCACCTGAGGGCTGGGTaGGTCCCCCAGGCGCCCATT +
Preference number: 4 (lower is better)
Translates to: GLRTIQPDISSLLPKPPLHLRAG*VPQAPI
Trigger: AATGGGCGCCTGGGGGACTCACCCAGCCCTCAGGTG...CAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp AAGGGGACGTGCATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTGGCTTGGTGCTCCGCTaGAGGACATCCAGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: KGTCIMPTLLGSGREGWAGLVLR*RTSRSC
Trigger: GCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCC...AGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGATGCACGTCCCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGGTGGGCAACGGCTGTTaGTGGAAGATGAGCTCGGGA +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVVGNGC*WKMSSG
Trigger: TCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCAC...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTACGAAGGTGCGGCCCGTaGGGTCAAAGACGCAGAGGA +
Preference number: 4 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLRRCGP*GQRRRG
Trigger: TCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCG...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGGGCAACGGCTGTTGCTaGAAGATGAGCTCGGGAGTG +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVGNGCC*KMSSGV
Trigger: CACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCC...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTTGGTGGCTCTCAGCTTaGCGAAGGTGCGGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATWWLSA*RRCGPW
Trigger: CCACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCA...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCTGTAAGTCCGCAGATTaGGCTGCCTCCTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPCKSAD*AASSWW
Trigger: CCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACA...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGACCGGGACTGCAGCTCTaGTGCCAGTCGCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGPGLQL*CQSLLG
Trigger: ACCCAGGAGCGACTGGCAGCAGAGCTGCAGTCCCGG...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGGGAGCAGGCCTCGTGTaGGTTATAGACCAAGCCGAA +
Preference number: 4 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVGAGLV*VIDQAE
Trigger: TTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCC...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR CCA 90 bp GGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGGGGTCAGGCGGGACACCAGAGCACGTACTGCATaGAGTCCCGGGGTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: GPELPRHGGVIEGVRRDTRARTA*SPGVLC
Trigger: ACACAGAACCCCGGGACTCCATGCAGTACGTGCTCT...GGTGTCCCGCCTGACCCCTTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAAGAGGCTCTCCATGGTaGCCAGTGGTGCCCGCCGGG +
Preference number: 4 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRRGSPW*PVVPAG
Trigger: CCCGGCGGGCACCACTGGCCACCATGGAGAGCCTCT...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACGTGGCCAGACACTCCTaGCTGCTGAGGCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNVARHS*LLRPVG
Trigger: CCCCACGGGCCTCAGCAGCCAGGAGTGTCTGGCCAC...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCGGTCATCCTGCTTGGTaGGGCTGGCCCCGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: VGNGRGFPARSQNTLLLAGHPAW*GWPRGL
Trigger: CAGGCCACGGGGCCAGCCCCACCAAGCAGGATGACC...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACCCAGGTCATCCTGCTTaGTGGGGCTGGCCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNPGHPA*WGWPRG
Trigger: GCCACGGGGCCAGCCCCACCAAGCAGGATGACCTGG...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp TGCCACCTGCGGCCTCCTCCTCTTCAATGGTTGCACTaGGTGGTCGCTCAGGAGTCACACCCCCGCTGCCTA +
Preference number: 4 (lower is better)
Translates to: CHLRPPPLQWLH*VVAQESHPRCL
Trigger: TAGGCAGCGGGGGTGTGACTCCTGAGCGACCACCAAGTGCAACCATTGAAGAGGAGGAGGCCGCAGGTGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp GCTAGGCTGAGGCACTGCCTCGGCAGGGGGCAGGGTGACCAGGAGTCTGTTGTGTCTCGTGCGAGTTCTTaGGGTCGAGGTACTTGGTGT +
Preference number: 4 (lower is better)
Translates to: ARLRHCLGRGQGDQESVVSRASS*GRGTWC
Trigger: ACACCAAGTACCTCGACCTCAAGAACTCGCACGAGA...CACAACAGACTCCTGGTCACCCTGCCCCCTGCCGAGGCAGTGCCTCAGCCTAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCGTGGTCACCTCCACCTaGTCCTCGGGCAGCTCCGAC +
Preference number: 4 (lower is better)
Translates to: LPSARPRTETSCRPYRGVVVTST*SSGSSD
Trigger: GTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCAC...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGGCTGGGCGAGCCTCTaGTGCTTCGGAAGCCTGAGG +
Preference number: 4 (lower is better)
Translates to: FGFRPQGPELPRHGGVIEGWASL*CFGSLR
Trigger: CCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCC...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTGCGAATTCTAGCACCTaGGGGCTGGGTGAGTCCCCC +
Preference number: 4 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATANSST*GLGESP
Trigger: GGGGGACTCACCCAGCCCTCAGGTGCTAGAATTCGC...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACGCTCCCCCGAGGAGCTaGGTGGGAAGGAGGGTGAGA +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNAPPRS*VGRRVR
Trigger: TCTCACCCTCCTTCCCACTCAGCTCCTCGGGGGAGC...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATACAGCTCAGAAGGATaGCCAGGTAGCCTCGGCCGT +
Preference number: 4 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLYSSEG*PGSLGR
Trigger: ACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTA...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp AGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGTGAGGGTGGGGGTGCCCGCCGGGACTaGAGCTCTGCTGCCAGTCGC +
Preference number: 4 (lower is better)
Translates to: RARCQLELRVRICGSEGGGARRD*SSAASR
Trigger: GCGACTGGCAGCAGAGCTGCAGTCCCGGCGGGCACC...CCCACCCTCACTCCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGACGGCGGGACCAGCTaGTGGCCTGACCCTCCTCTA +
Preference number: 4 (lower is better)
Translates to: FGFRPQGPELPRHGGVIEDGGTS*WPDPPL
Trigger: TAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTC...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGAGGAGGAAGGAGAGGATaGCGGCTGTGCCTGCTCCCA +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGGGRRG*RLCLLP
Trigger: TGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCC...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp GGGAGCCTCTCCCCAAAGCTACTGGGCCCTGAGTGGTaGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GSLSPKLLGPEW*LGTHKALSSGW
Trigger: CCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCCCAGTAGCTTTGGGGAGAGGCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CAA 72 bp CTAGGCATCCAGGAGAGCAAGTGGGCAGAGGCATGTTaGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGC +
Preference number: 4 (lower is better)
Translates to: LGIQESKWAEAC*VSDPRAQSCLG
Trigger: GCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAACATGCCTCTGCCCACTTGCTCTCCTGGATGCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGATGTCTTCCTCAATGGTaGCCCCAGGGGCGAATCGGG +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGCLPQW*PQGRIG
Trigger: CCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACA...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGCTCACCATGACCTTTaGAGCAGACAGCAGCGCTGT +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQAHHDL*SRQQRC
Trigger: ACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp CACGAGCAGGACCGAGCCAGCTGGCAGAGACCACAGGTGGGCTTCCTCATCAGGCAATCACCAAGATGGTaGATGGAGTCCCGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: HEQDRASWQRPQVGFLIRQSPRW*MESRGS
Trigger: AGAACCCCGGGACTCCATGCACCATCTTGGTGATTG...CCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR CCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTGGTGTTTCTGGTCACTaGCATCCCAGACAGGAAAGC +
Preference number: 4 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSGVSGH*HPRQES
Trigger: GCTTTCCTGTCTGGGATGCCAGTGACCAGAAACACC...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGACAGTCAGGGCATCCTTaGGGGACAGTGTTCCCCGGA +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGQSGHP*GTVFPG
Trigger: TCCGGGGAACACTGTCCCCCAAGGATGCCCTGACTG...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCAGCGCATGGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTATTGTCGCCCCAGATaGCAAAGTATGTGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: GQRMAGRACAAGLGTVCVYCRPR*QSMWAP
Trigger: AGGAGCCCACATACTTTGCCATCTGGGGCGACAATA...CACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCCATGCGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAAGCCGCCTCCAGGGGTTaGGTGTCCTGTGAGTGCTTG +
Preference number: 4 (lower is better)
Translates to: FGFRPQGPELPRHGGVIEAASRG*VSCECL
Trigger: CAAGCACTCACAGGACACCCAACCCCTGGAGGCGGC...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp TTGCCTAGTGCCAGACCCAGAACAGAGACGTCATGCCGCCCATACAGAGGAGTCGCACCAGGCCAGCAATaGTGTCGGAGGGCACGATGT +
Preference number: 4 (lower is better)
Translates to: LPSARPRTETSCRPYRGVAPGQQ*CRRARC
Trigger: ACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGC...GACTCCTCTGTATGGGCGGCATGACGTCTCTGTTCTGGGTCTGGCACTAGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGAGGATGGCGGCTGTaGCTGCTCCCAAGGAGTGGC +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGRGWRL*LLPRSG
Trigger: GCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCT...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCAGGCACCATCATaGAGTAGAGGTCCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: PLFSSNAPGPETIWPLGASQAPS*SRGPGR
Trigger: CCTTCCAGGACCTCTACTGCATGATGGTGCCTGAGA...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp AGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGTGAGGGTGGGCAGGACCGAGCCAGCTaGCAGAGACCACAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: RARCQLELRVRICGSEGGQDRAS*QRPQVG
Trigger: GCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTG...CCCACCCTCACTCCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACTCTCGCCCAAAGGCCTaGGACAGGACCATCTCCTGC +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNSRPKA*DRTISC
Trigger: GCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGA...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGATCCGCCATTTGGGCTTaGTGCTCCGCTGCAGGACAT +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGSAIWA*CSAAGH
Trigger: ATGTCCTGCAGCGGAGCACCAAGCCCAAATGGCGGA...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAACTCCATGGTGGCCAGTaGTGCCCGCCGGGACTGCAG +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKLHGGQ*CPPGLQ
Trigger: CTGCAGTCCCGGCGGGCACCACTGGCCACCATGGAG...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTATCCTGCAAAGAGCCTaGGGGGCTTGGGTACCAGGT +
Preference number: 4 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATILQRA*GAWVPG
Trigger: ACCTGGTACCCAAGCCCCCCAGGCTCTTTGCAGGAT...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGCTGAGGACCATCCAACCTGACATCTCCTCCCTGTTACCAAAGCCACCCCTGTCCGGATCTTGTCTGTaGCCAGACACTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: GLRTIQPDISSLLPKPPLSGSCL*PDTPGC
Trigger: GCAGCCAGGAGTGTCTGGCCACAGACAAGATCCGGA...CAGGGGTGGCTTTGGTAACAGGGAGGAGATGTCAGGTTGGATGGTCCTCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGACGTGGCCTGTGGGGGTaGAAGTCCGGATCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRRGLWG*KSGSCL
Trigger: CAGACAAGATCCGGACTTCCACCCCCACAGGCCACG...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAGGCGGGACCAGCTGGTaGCCTGACCCTCCTCTAACC +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKGGTSW*PDPPLT
Trigger: GGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCC...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAAGGTACTTGGTGTTTCTaGTCACTGGCATCCCAGACA +
Preference number: 4 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQGTWCF*SLASQT
Trigger: TGTCTGGGATGCCAGTGACCAGAAACACCAAGTACC...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGAGGCAGAGACCACAGGTaGGCTTCCTCATCAGGTACA +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGGRDHR*ASSSGT
Trigger: TGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCC...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCCCTGCTCCCAAGGAGTaGCCTACCACAATCAGGCCA +
Preference number: 4 (lower is better)
Translates to: VGNGRGFPARSQNTLLLAPAPKE*PTTIRP
Trigger: TGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGG...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGAGGGAAAGGCCAATCCTaGGGACAAGGTCTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGGKGQS*GQGLCP
Trigger: TGGGCAAAGACCTTGTCCCCAGGATTGGCCTTTCCC...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCCGGAAACCTTCCAGCTaGGAAAGGCCAATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: VGNGRGFPARSQNTLLLARKPSS*ERPILG
Trigger: CCCCAGGATTGGCCTTTCCCAGCTGGAAGGTTTCCG...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGGATGATGCGGCCAGGTaGGTAGAGTGGGGTGCTAGC +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGDDAAR*VEWGAS
Trigger: GCTAGCACCCCACTCTACCCACCTGGCCGCATCATC...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACCCAGTCGCTCCTGGGTaGACAGCAGCAGAAGCTCTA +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNPVAPG*TAAEAL
Trigger: TAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGG...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCAGATTTCCTGTTGGCTaGGGGACTTGGGGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: VGNGRGFPARSQNTLLLARFPVG*GTWGPQ
Trigger: CTGAGGGCCCCAAGTCCCCCAGCCAACAGGAAATCT...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp TTGGCCCCTCATCTTATGGGCTGGACACAGTGGGAGTaGGAGCCCAGACCCAGAAAGGAGCTAGGCATCCAG +
Preference number: 4 (lower is better)
Translates to: LAPHLMGWTQWE*EPRPRKELGIQ
Trigger: CTGGATGCCTAGCTCCTTTCTGGGTCTGGGCTCCAACTCCCACTGTGTCCAGCCCATAAGATGAGGGGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CAA 72 bp ATGTCATTGTTTGCCTCGTCCAGCACCGCATTGCGTTaGGCTCGCTGCCGCTGTCTAAGCAGCACCAGGCCA +
Preference number: 4 (lower is better)
Translates to: MSLFASSSTALR*ARCRCLSSTRP
Trigger: TGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAGGCAAACAATGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 72 bp GCCAAGATGTCATTGTTTGCCTCGTCCAGCACCGCATaGCGTTTGGCTCGCTGCCGCTGTCTAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: AKMSLFASSSTA*RLARCRCLSST
Trigger: GGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAGGCAAACAATGACATCTTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp TGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCTGAACTGGAACAGGTGTAGTACTGTGTaGGCCAGACGATGCCCACGA +
Preference number: 4 (lower is better)
Translates to: CAAGLGTVCVWGVNLNWNRCSTV*ARRCPR
Trigger: TCGTGGGCATCGTCTGGCTCACACAGTACTACACCT...GTTCCAGTTCAGATTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTGCTCCAACTTCTTCTTaGTGTACTCAGCTGAGAGTA +
Preference number: 4 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSAPTSS*CTQLRV
Trigger: TACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGC...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGGCGAATCGGGGTCGTaGAGGGCAGAGACAGCACGA +
Preference number: 4 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQGESGS*RAETAR
Trigger: TCGTGCTGTCTCTGCCCTGCACGACCCCGATTCGCC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAACGGGCAGCTCCGACTTaGGGATACACTTGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRAAPT*GYTWWP
Trigger: GGGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCG...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCTGTCCTGTGAGTGCTTaGACAGACTGTCGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: VGNGRGFPARSQNTLLLACPVSA*TDCRLP
Trigger: TGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACA...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCAAGCAAGATTTCCTGTTaGCTGGGGGACTTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPSKISC*LGDLGP
Trigger: GGGCCCCAAGTCCCCCAGCCAACAGGAAATCTTGCT...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp AGAAGGGGTCAGGCGGGACACCAAAGAGACAGGGTTTaGGATGCCTTCTTTCTTCCCAGGGCCCTGACTCTG +
Preference number: 4 (lower is better)
Translates to: RRGQAGHQRDRV*DAFFLPRALTL
Trigger: CAGAGTCAGGGCCCTGGGAAGAAAGAAGGCATCCAAAACCCTGTCTCTTTGGTGTCCCGCCTGACCCCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
3UTR CAA 72 bp CGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTaGGCCCCTCATCTTATGGGCTGGACACAGTGGGAG +
Preference number: 4 (lower is better)
Translates to: RGFPARSQNTLL*APHLMGWTQWE
Trigger: CTCCCACTGTGTCCAGCCCATAAGATGAGGGGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGTCAGCAGGATGGTTGTaGACCACGTGGATGATGCGG +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGSAGWL*TTWMMR
Trigger: CCGCATCATCCACGTGGTTCACAACCATCCTGCTGA...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp AGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGTGAGGGTGGGGCCATTTGGGCTTGGTaGTCCGCTGCAGGACATCCA +
Preference number: 4 (lower is better)
Translates to: RARCQLELRVRICGSEGGAIWAW*SAAGHP
Trigger: TGGATGTCCTGCAGCGGAGCACCAAGCCCAAATGGC...CCCACCCTCACTCCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGTGGGTGTCCTGTGAGTaGTTGGACAGACTGTCGGCT +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGWVSCE*LDRLSA
Trigger: AGCCGACAGTCTGTCCAAGCACTCACAGGACACCCA...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGGGAGCAGGCCTCGTGTaGGTTATAGACCAAGCCGAA +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGGAGLV*VIDQAE
Trigger: TTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCC...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGACTTGATGTACTCAGCTaGGAGTACCATGCCCTTGTG +
Preference number: 4 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRLDVLS*EYHALV
Trigger: CACAAGGGCATGGTACTCTCAGCTGAGTACATCAAG...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGCCCTGAGTGGTTGTTAGGTACCCACAAGGCCTTGAGCTCTGGCTGGGAAGGAATGCAGCATGGCTGGTaGGATGATCACCTCGTTAAA +
Preference number: 4 (lower is better)
Translates to: GPEWLLGTHKALSSGWEGMQHGW*DDHLVK
Trigger: TTTAACGAGGTGATCATCTCACCAGCCATGCTGCAT...TCCTTCCCAGCCAGAGCTCAAGGCCTTGTGGGTACCTAACAACCACTCAGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGGGTTGGGTGTCCTGTaGGTGCTTGGACAGACTGTC +
Preference number: 4 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQGLGVL*VLGQTV
Trigger: GACAGTCTGTCCAAGCACTCACAGGACACCCAACCC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAATACAGCTCAGAAGGATaGCCAGGTAGCCTCGGCCGT +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKYSSEG*PGSLGR
Trigger: ACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTA...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR CCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAGATGGCAAAGTATGTaGGCTCCTCCTGCTCACAGC +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGRWQSM*APPAHS
Trigger: GCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCT...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp TTCTTCTTGATGTACTCAGCTGAGAGTACCATGCCCTaGTGGCCCAACCAGGTGCCTCTGTGTCCCTCCACA +
Preference number: 4 (lower is better)
Translates to: FFLMYSAESTMP*WPNQVPLCPST
Trigger: TGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 72 bp GCCTGGGACAGGACCATCTCCTGCTCCAACTTCTTCTaGATGTACTCAGCTGAGAGTACCATGCCCTTGTGG +
Preference number: 4 (lower is better)
Translates to: AWDRTISCSNFF*MYSAESTMPLW
Trigger: CCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAAGGACATCCAGAAGCTaGCGACGGAAACCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRTSRS*RRKPSS
Trigger: GCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCT...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp AGGACAGTGATGCAGACGCTGAGAATGACCACCCAGTaGCAGACGACCATTCCGAGGGTGACATTCTTAGCA +
Preference number: 4 (lower is better)
Translates to: RTVMQTLRMTTQ*QTTIPRVTFLA
Trigger: TGCTAAGAATGTCACCCTCGGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 72 bp CGTAGCATCTCGTGCGAGTTCTTGAGGTCGAGGTACTaGGTGTTTCTGGTCACTGGCATCCCAGACAGGAAA +
Preference number: 4 (lower is better)
Translates to: RSISCEFLRSRY*VFLVTGIPDRK
Trigger: TTTCCTGTCTGGGATGCCAGTGACCAGAAACACCAAGTACCTCGACCTCAAGAACTCGCACGAGATGCTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATGTGAACCACGTGGATaGTGCGGCCAGGTGGGTAGA +
Preference number: 4 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSCEPRG*CGQVGR
Trigger: TCTACCCACCTGGCCGCATCATCCACGTGGTTCACA...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAAGGTTGGGCTCAAACTaGGCCCGAAGCAAGATTTCC +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRLGSN*ARSKIS
Trigger: GGAAATCTTGCTTCGGGCTCAGTTTGAGCCCAACCT...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCAGTGTGCTGGCCAGAGTaGTCACCTCCACCTGATCCT +
Preference number: 4 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSVCWPE*SPPPDP
Trigger: AGGATCAGGTGGAGGTGACCACTCTGGCCAGCACAC...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAACGATGGTCAAATCACTaGGGTGTGTCCAGAGTCGTG +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRWSNH*GVSRVV
Trigger: CACGACTCTGGACACACCCCAGTGATTTGACCATCG...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAACCTCCTCCTCTTCAATaGTTGCACTTGGTGGTCGCT +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKPPPLQ*LHLVVA
Trigger: AGCGACCACCAAGTGCAACCATTGAAGAGGAGGAGG...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAAAGACTCATCTCAGACTaGGACTTGCTCCTGACACTG +
Preference number: 4 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRLISD*DLLLTL
Trigger: CAGTGTCAGGAGCAAGTCTCAGTCTGAGATGAGTCT...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
3UTR CAA 72 bp AGGCGATTTCTGAGTAGGCATCTGACTGGGAATCCTTaGTCCGGGTGCAACAGAGGAACACTTTTAGACGGC +
Preference number: 4 (lower is better)
Translates to: RRFLSRHLTGNP*SGCNRGTLLDG
Trigger: GCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCAGATGCCTACTCAGAAATCGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
3UTR CAA 72 bp ATGGCTGGTGAGATGATCACCTCGTTAAAGGCTTTATaGTCGCCCCAGATGGCAAAGTATGTGGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: MAGEMITSLKAL*SPQMAKYVGSS
Trigger: GGAGGAGCCCACATACTTTGCCATCTGGGGCGACAATAAAGCCTTTAACGAGGTGATCATCTCACCAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125567.8
CDS-3UTR TCA 90 bp CTTCACTTCACAGGCTATATTCTTGGCAGGTTAGGAGGAGCAGGAGGCAGGCAAGTGTTCCCCGGATACTaGTCACCACTTTCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: LHFTGYILGRLGGAGGRQVFPGY*SPLSSC
Trigger: ACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACAC...TTGCCTGCCTCCTGCTCCTCCTAACCTGCCAAGAATATAGCCTGTGAAGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp GGGAGAGTGGCCAGGGCAAGGTGCCAACTTGAACTACGTGTGAGAATATGTGGGAATCCTTTGTCCGGGTaGAACAGAGGAACACTTTTA +
Preference number: 4 (lower is better)
Translates to: GRVARARCQLELRVRICGNPLSG*NRGTLL
Trigger: TAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATT...CCCACATATTCTCACACGTAGTTCAAGTTGGCACCTTGCCCTGGCCACTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCCCCGTGGCCTGTaGGGGTGGAAGTCCGGATCT +
Preference number: 4 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEWPRGL*GWKSGS
Trigger: AGATCCGGACTTCCACCCCCACAGGCCACGGGGCCA...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCGCTGCCAGTCGCTCCTaGGTGGACAGCAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGAASRS*VDSSRS
Trigger: GCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGC...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR TCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCCGGTGGGGCTCACCATaGCCTTTGCAGCAGACAGCA +
Preference number: 4 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGRWGSP*PLQQTA
Trigger: TGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCG...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAGTCCGCAGATTGCGCTaGCTCCTCTTGGTGGCTCTC +
Preference number: 4 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEVRRLR*LLLVAL
Trigger: GAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGAC...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCGTTCTGTGTAGAGGATaGCCCCACGCATGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGVLCRG*PHACSA
Trigger: GGCTGAGCATGCGTGGGGGCATCCTCTACACAGAAC...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR GCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATATGTGGGCTCCTCCTaGTCACAGCAGCAGCACTGC +
Preference number: 4 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEYVGSS*SQQQHC
Trigger: GCAGTGCTGCTGCTGTGAGCAGGAGGAGCCCACATA...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAACCCTCACTGCCACCTaGGGCCTCCTCCTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: SDISVDLSYIRYKKVMGETLTAT*GLLLFN
Trigger: ATTGAAGAGGAGGAGGCCGCAGGTGGCAGTGAGGGT...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR GCA 90 bp ATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAATGGCTGGGGACAAGGTCTTTaGCCAGAACCACAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: ILVWIFHTLGTKRSWENGWGQGL*PEPQQS
Trigger: TGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCA...GCCATTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCAGCACCGCATTGCGTTaGGCTCGCTGCCGCTGTCTA +
Preference number: 5 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPSTALR*ARCRCL
Trigger: TAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCT...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCAGTCAGGGCATCCTaGGGGGACAGTGTTCCCCGG +
Preference number: 5 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLSVRAS*GDSVPR
Trigger: CCGGGGAACACTGTCCCCCAAGGATGCCCTGACTGA...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATCGGGCAGCTCCGACTaGGGGATACACTTGGTGGCC +
Preference number: 5 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQSGSSD*GIHLVA
Trigger: GGCCACCAAGTGTATCCCCAAGTCGGAGCTGCCCGA...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTATCCCATCTCGTGCGAGTTCTaGAGGTCGAGGTACTTGGTG +
Preference number: 5 (lower is better)
Translates to: GHKGGQLLACTPQWLAYPISCEF*RSRYLV
Trigger: CACCAAGTACCTCGACCTCAAGAACTCGCACGAGAT...GGGATAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp ACAAGGGCACAAGGGTGGGCAGCTGCTTGCCTGCACACCCCAGTGGCTGGCTTAGACTTGGGGATACACTaGGTGGCCCCCACGATGATC +
Preference number: 5 (lower is better)
Translates to: TRAQGWAAACLHTPVAGLDLGIH*VAPTMI
Trigger: GATCATCGTGGGGGCCACCAAGTGTATCCCCAAGTC...TAAGCCAGCCACTGGGGTGTGCAGGCAAGCAGCTGCCCACCCTTGTGCCCTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTACTTTTGGCCTTGGTGGCTCTCAGCTaGACGAAGGTGCGGCCCGTG +
Preference number: 5 (lower is better)
Translates to: VGNGRGFPARSQNTLLLALVALS*TKVRPV
Trigger: CACGGGCCGCACCTTCGTCAAGCTGAGAGCCACCAA...GGCCAAAAGTAGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS CCA 90 bp ACTCAATCACCAAGATGGCCAGGCGCACGTAGAGCACGTACTGCATaGAGTCCCGGGGTTCTGTGTAGAGGATGCCCCCACGCATGCTCA +
Preference number: 5 (lower is better)
Translates to: TQSPRWPGARRARTA*SPGVLCRGCPHACS
Trigger: TGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGGCCATCTTGGTGATTGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGATTGCGCTGCCTCCTCTaGGTGGCTCTCAGCTTGACG +
Preference number: 5 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRLRCLL*VALSLT
Trigger: CGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAA...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTAAAGCCAAGATGTCATaGTTTGCCTCGTCCAGCACC +
Preference number: 5 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSKAKMS*FASSST
Trigger: GGTGCTGGACGAGGCAAACAATGACATCTTGGCTTT...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGCTGGGAGAGCTTGTGCTGCGGGTCTGGGGACAGTGTGTGTGTGGGGTGTCAATTGAGGTCGAGGTACTaGGTGTTTCTGGTCACTGGC +
Preference number: 5 (lower is better)
Translates to: GWESLCCGSGDSVCVGCQLRSRY*VFLVTG
Trigger: GCCAGTGACCAGAAACACCAAGTACCTCGACCTCAA...TTGACACCCCACACACACACTGTCCCCAGACCCGCAGCACAAGCTCTCCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp CTGGAGGGCAGTGACAGGAAGCTAGCTTGCCTAGTGCCAGACCCAGAACAGAGAATCCGCCATTTGGGCTaGGTGCTCCGCTGCAGGACA +
Preference number: 5 (lower is better)
Translates to: LEGSDRKLACLVPDPEQRIRHLG*VLRCRT
Trigger: TGTCCTGCAGCGGAGCACCAAGCCCAAATGGCGGAT...TCTCTGTTCTGGGTCTGGCACTAGGCAAGCTAGCTTCCTGTCACTGCCCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS CCA 90 bp GTAGCCTCGGCCGTGGTCCACCAGGTTCAGGGAGCAGGCCTCGTGTaGGTTATAGACCAAGCCGAAGAGCACCACAGACAGGATTACAAA +
Preference number: 5 (lower is better)
Translates to: VASAVVHQVQGAGLV*VIDQAEEHHRQDYK
Trigger: TTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039327.11
ENSMUST00000125567.8
CDS-3UTR CAA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAATCGTCCAGCACCGCATaGCGTTTGGCTCGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: GERAGFLPPELLLQSIGKSSSTA*RLARCR
Trigger: GCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGA...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp AAGGGGACGTGCATCATGCCCACCCTTCTAGGGTCAGGCAGGGAGGGGTGGGCTATCACCACTTTCTTCTaGTCATGGTCCACAGCTACG +
Preference number: 5 (lower is better)
Translates to: KGTCIMPTLLGSGREGWAITTFF*SWSTAT
Trigger: CGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGAT...AGCCCACCCCTCCCTGCCTGACCCTAGAAGGGTGGGCATGATGCACGTCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp CCCCTGTTCAGCAGCAATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCCTCTTGCTGTCCAGGTaGAAGAGGCTGTCAATGAAC +
Preference number: 5 (lower is better)
Translates to: PLFSSNAPGPETIWPLGALLLSR*KRLSMN
Trigger: GTTCATTGACAGCCTCTTCAACCTGGACAGCAAGAG...GGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCATTGCTGCTGAACAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGCCCCTCCCGTTGGCAATGGGCGGGGGTTTCCAGCCAGGTCCCAGAATACTCTGCAGTCACAAACTCTTaGGAGTATTCCATAGCATCC +
Preference number: 5 (lower is better)
Translates to: GPSRWQWAGVSSQVPEYSAVTNS*EYSIAS
Trigger: GGATGCTATGGAATACTCCAAAGAGTTTGTGACTGC...AGAGTATTCTGGGACCTGGCTGGAAACCCCCGCCCATTGCCAACGGGAGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GGGGAAAGGGCTGGGTTCCTACCTCCTGAACTGCTTCTCCAAAGCATAGGAAAACGTGGGCAACGGCTGTaGCTGGAAGATGAGCTCGGG +
Preference number: 5 (lower is better)
Translates to: GERAGFLPPELLLQSIGKRGQRL*LEDELG
Trigger: CCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACG...TTTTCCTATGCTTTGGAGAAGCAGTTCAGGAGGTAGGAACCCAGCCCTTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATCCCCCAGGCGCCCATaGTGCAGTGCCAGCTCTCCC +
Preference number: 5 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSSPRRP*CSASSP
Trigger: GGGAGAGCTGGCACTGCACAATGGGCGCCTGGGGGA...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCATGGAAGGAGCTGCTCTaGCTGTCCAGGTTGAAGAGG +
Preference number: 5 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPWKELL*LSRLKR
Trigger: CCTCTTCAACCTGGACAGCAAGAGCAGCTCCTTCCA...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp TTTGGTTTCAGACCCCAGGGCCCAGAGCTGCCTAGGCATGGTGGGGTGATAGAATTGCAGCCACAACAGTaGTCTTCCTCAATGGTGACC +
Preference number: 5 (lower is better)
Translates to: FGFRPQGPELPRHGGVIELQPQQ*SSSMVT
Trigger: GGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAA...TTCTATCACCCCACCATGCCTAGGCAGCTCTGGGCCCTGGGGTCTGAAACCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp ATGCTCCAGGGCCTGAGACCATTTGGCCTCTGGGAGCCTCTCCCCAAAGCTACTTGCTCCAACTTCTTCTaGATGTACTCAGCTGAGAGT +
Preference number: 5 (lower is better)
Translates to: MLQGLRPFGLWEPLPKATCSNFF*MYSAES
Trigger: ACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCA...AGTAGCTTTGGGGAGAGGCTCCCAGAGGCCAAATGGTCTCAGGCCCTGGAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp GAGGGTTCATGGGAGCCTGGCTGTTCGCTACTAGTTGCATATGGAAGTCGCCCATCGTTAAAGGCTTTATaGTCGCCCCAGATGGCAAAG +
Preference number: 5 (lower is better)
Translates to: EGSWEPGCSLLVAYGSRPSLKAL*SPQMAK
Trigger: CTTTGCCATCTGGGGCGACAATAAAGCCTTTAACGA...TGGGCGACTTCCATATGCAACTAGTAGCGAACAGCCAGGCTCCCATGAACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp ACATTAGGTACAAAAAGGTCATGGGAGAATGGCACGTGGAGTGCAGAGGGTTCATTCTCCAGCACCTTATaGAGCCCCTCCATGACCACA +
Preference number: 5 (lower is better)
Translates to: TLGTKRSWENGTWSAEGSFSSTL*SPSMTT
Trigger: TGTGGTCATGGAGGGGCTCAATAAGGTGCTGGAGAA...TGAACCCTCTGCACTCCACGTGCCATTCTCCCATGACCTTTTTGTACCTAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAGTGTCCTGTGAGTGCTaGGACAGACTGTCGGCTGCC +
Preference number: 5 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEVSCEC*DRLSAA
Trigger: GGCAGCCGACAGTCTGTCCAAGCACTCACAGGACAC...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS-3UTR CAA 90 bp AGCGATATTAGTGTGGATCTTTCATACATTAGGTACAAAAAGGTCATGGGAGAAAAGCAAGATTTCCTGTaGGCTGGGGGACTTGGGGCC +
Preference number: 5 (lower is better)
Translates to: SDISVDLSYIRYKKVMGEKQDFL*AGGLGA
Trigger: GGCCCCAAGTCCCCCAGCCAACAGGAAATCTTGCTT...TTCTCCCATGACCTTTTTGTACCTAATGTATGAAAGATCCACACTAATATCGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11
CDS CCA 72 bp CCAAGATGGCCAGGCGCACGTAGAGCACGTACTGCATaGAGTCCCGGGGTTCTGTGTAGAGGATGCCCCCAC +
Preference number: 6 (lower is better)
Translates to: PRWPGARRARTA*SPGVLCRGCPH
Trigger: GTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGGCCATCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039327.11