RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DAG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039952

Ensembl transcript IDs: ENSMUST00000080435.9, ENSMUST00000166905.8, ENSMUST00000171412.7, ENSMUST00000191899.6

Found 516 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCAGGATGTCCATGGCCCAAGAGGCCCCTCCAGCTTCCAGCCCCTaGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCC +
Preference number: 1 (lower is better)
Translates to: VRMSMAQEAPPASSP*QQRESEPSTRALAP
Trigger: GGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTCTTGGGCCATGGACATCCTGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 90 bp GGGAAAAGAAAGGTTGATGAGGTGGAGTCCTTCGACCTTCCCAGGTaGCCCTACGAGCAGCTGGCCCACCTTGGAGCACCTAGGTTGGAG +
Preference number: 1 (lower is better)
Translates to: GKRKVDEVESFDLPR*PYEQLAHLGAPRLE
Trigger: CTCCAACCTAGGTGCTCCAAGGTGGGCCAGCTGCTCGTAGGGGCACCTGGGAAGGTCGAAGGACTCCACCTCATCAACCTTTCTTTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 90 bp CCCTCTGCTCAACAGTCGATATGGCTTAGAAGGTACTGCTCCGTGTaGAAAGGGAGCCTGGGTCCACCCACCCACCCTCCATCAGGGAAG +
Preference number: 1 (lower is better)
Translates to: PSAQQSIWLRRYCSV*KGSLGPPTHPPSGK
Trigger: CTTCCCTGATGGAGGGTGGGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCCATATCGACTGTTGAGCAGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 90 bp GACAGCACACCCTCTGCTCAACAGTCGATATGGCTTAGAAGGTACTaGTCCGTGTGCAAAGGGAGCCTGGGTCCACCCACCCACCCTCCA +
Preference number: 1 (lower is better)
Translates to: DSTPSAQQSIWLRRY*SVCKGSLGPPTHPP
Trigger: TGGAGGGTGGGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCCATATCGACTGTTGAGCAGAGGGTGTGCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp TCGGCAGACTCCCGCATGGGGAGTGCTCACTACAAAGAACCCTCCTaGGGGCTGAGCAGGAAGGGTAGGCCTTGTGGAGAAAGCAGAAGA +
Preference number: 1 (lower is better)
Translates to: SADSRMGSAHYKEPS*GLSRKGRPCGESRR
Trigger: TCTTCTGCTTTCTCCACAAGGCCTACCCTTCCTGCTCAGCCCCCAGGAGGGTTCTTTGTAGTGAGCACTCCCCATGCGGGAGTCTGCCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp ACTCCCGCATGGGGAGTGCTCACTACAAAGAACCCTCCTGGGGGCTaGGCAGGAAGGGTAGGCCTTGTGGAGAAAGCAGAAGAACCACCA +
Preference number: 1 (lower is better)
Translates to: TPAWGVLTTKNPPGG*AGRVGLVEKAEEPP
Trigger: TGGTGGTTCTTCTGCTTTCTCCACAAGGCCTACCCTTCCTGCTCAGCCCCCAGGAGGGTTCTTTGTAGTGAGCACTCCCCATGCGGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 90 bp GTCTCAGAGTCTGATGGCCATCGCCGGCTCAGGGAGGGGGCTGCCTaGAAAGGCATTGTTGCTGTTGTTATTCTGTTCACTGCCCCACTG +
Preference number: 1 (lower is better)
Translates to: VSESDGHRRLREGAA*KGIVAVVILFTAPL
Trigger: CAGTGGGGCAGTGAACAGAATAACAACAGCAACAATGCCTTTGCAGGCAGCCCCCTCCCTGAGCCGGCGATGGCCATCAGACTCTGAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp CTAGAAGCAGCTTGCGTATTGGCAGAGGTCCCGGCGGCACAGAAATaGCAGCTTCTGCAGAGGTTCCCTGAGCTGCCCTTCTCTACCATG +
Preference number: 1 (lower is better)
Translates to: LEAACVLAEVPAAQK*QLLQRFPELPFSTM
Trigger: CATGGTAGAGAAGGGCAGCTCAGGGAACCTCTGCAGAAGCTGCCATTTCTGTGCCGCCGGGACCTCTGCCAATACGCAAGCTGCTTCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp GTTGGTGAACACTTGAATGTGAGATTGGCTCTCTGTCTCAGAGTCTaGTGGCCATCGCCGGCTCAGGGAGGGGGCTGCCTGCAAAGGCAT +
Preference number: 1 (lower is better)
Translates to: VGEHLNVRLALCLRV*WPSPAQGGGCLQRH
Trigger: ATGCCTTTGCAGGCAGCCCCCTCCCTGAGCCGGCGATGGCCATCAGACTCTGAGACAGAGAGCCAATCTCACATTCAAGTGTTCACCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 90 bp GTGTTAAAGGCAAAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTaGGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACT +
Preference number: 1 (lower is better)
Translates to: VLKAKCRELGPPSTA*EFIHGSSLPPSTST
Trigger: AGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTGCCTTTAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 90 bp GTTAGTGTTAAAGGCAAAATGCAGAGAGCTGGGGCCGCCCAGCACTaGCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTC +
Preference number: 1 (lower is better)
Translates to: VSVKGKMQRAGAAQH*LRVHSRFLAPSFYL
Trigger: GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTGCCTTTAACACTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CCA 90 bp TGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCAATaGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTC +
Preference number: 1 (lower is better)
Translates to: CCQCVLGQVLGTSGQ*PVGHRSLQTTPSCL
Trigger: GAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CCA 90 bp CACCTTGGAGCACCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTaGAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGC +
Preference number: 1 (lower is better)
Translates to: HLGAPRLEAIATNAF*SPFPTEMKTPLVVG
Trigger: GCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGGTGCTCCAAGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR TCA 90 bp AATGGCAGCTTCTGCAGAGGTTCCCTGAGCTGCCCTTCTCTACCATaGTTGATCCTCTCCCACCATTCACGCCCAGGAACCAGAAGATCC +
Preference number: 1 (lower is better)
Translates to: NGSFCRGSLSCPSLP*LILSHHSRPGTRRS
Trigger: GGATCTTCTGGTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTCAGGGAACCTCTGCAGAAGCTGCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp AGTCGATATGGCTTAGAAGGTACTGCTCCGTGTGCAAAGGGAGCCTaGGTCCACCCACCCACCCTCCATCAGGGAAGGGATACATTATTG +
Preference number: 1 (lower is better)
Translates to: SRYGLEGTAPCAKGA*VHPPTLHQGRDTLL
Trigger: CAATAATGTATCCCTTCCCTGATGGAGGGTGGGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCCATATCGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp TTGCTGTTGTTATTCTGTTCACTGCCCCACTGCCTCCAGTTGCTATaGCAACAGGCCACTTTGGGCCTGCCTCCTCTCTACATGGCAATG +
Preference number: 1 (lower is better)
Translates to: LLLLFCSLPHCLQLL*QQATLGLPPLYMAM
Trigger: CATTGCCATGTAGAGAGGAGGCAGGCCCAAAGTGGCCTGTTGTCATAGCAACTGGAGGCAGTGGGGCAGTGAACAGAATAACAACAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp CCACCATTTGGAAGCAACCCTTCTGAACTACTGGCCTTTCCTTCCTaGGACAGCACACCCTCTGCTCAACAGTCGATATGGCTTAGAAGG +
Preference number: 1 (lower is better)
Translates to: PPFGSNPSELLAFPS*DSTPSAQQSIWLRR
Trigger: CCTTCTAAGCCATATCGACTGTTGAGCAGAGGGTGTGCTGTCTCAGGAAGGAAAGGCCAGTAGTTCAGAAGGGTTGCTTCCAAATGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp CCTTGTGGAGAAAGCAGAAGAACCACCATTTGGAAGCAACCCTTCTaGACTACTGGCCTTTCCTTCCTGAGACAGCACACCCTCTGCTCA +
Preference number: 1 (lower is better)
Translates to: PCGESRRTTIWKQPF*TTGLSFLRQHTLCS
Trigger: TGAGCAGAGGGTGTGCTGTCTCAGGAAGGAAAGGCCAGTAGTTCAGAAGGGTTGCTTCCAAATGGTGGTTCTTCTGCTTTCTCCACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 90 bp GATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTaGCTCTGGGACATCAGGGAAACTCCAGCTCGGACCAGAGCTTGG +
Preference number: 1 (lower is better)
Translates to: DEVTRNNFIGSDPCS*LWDIRETPARTRAW
Trigger: CCAAGCTCTGGTCCGAGCTGGAGTTTCCCTGATGTCCCAGAGTCAAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 90 bp CCTGGGTCCACCCACCCACCCTCCATCAGGGAAGGGATACATTATTaGAAAAGGCATTCCTCCCTAAAAGGTACCCGAAATAACTCAGAC +
Preference number: 1 (lower is better)
Translates to: PGSTHPPSIREGIHY*KRHSSLKGTRNNSD
Trigger: GTCTGAGTTATTTCGGGTACCTTTTAGGGAGGAATGCCTTTTGCAATAATGTATCCCTTCCCTGATGGAGGGTGGGTGGGTGGACCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp AGTTGCTATGACAACAGGCCACTTTGGGCCTGCCTCCTCTCTACATaGCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATC +
Preference number: 1 (lower is better)
Translates to: SCYDNRPLWACLLST*QCPMVGLLRATRVI
Trigger: GATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGCCATGTAGAGAGGAGGCAGGCCCAAAGTGGCCTGTTGTCATAGCAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp AGAAAGCAGAAGAACCACCATTTGGAAGCAACCCTTCTGAACTACTaGCCTTTCCTTCCTGAGACAGCACACCCTCTGCTCAACAGTCGA +
Preference number: 1 (lower is better)
Translates to: RKQKNHHLEATLLNY*PFLPETAHPLLNSR
Trigger: TCGACTGTTGAGCAGAGGGTGTGCTGTCTCAGGAAGGAAAGGCCAGTAGTTCAGAAGGGTTGCTTCCAAATGGTGGTTCTTCTGCTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 90 bp TGGCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTaGAGGGCTTCCCAAAGCCCTCACCTGGAATACTGGGATTTGTTT +
Preference number: 1 (lower is better)
Translates to: WQCPMVGLLRATRVI*RASQSPHLEYWDLF
Trigger: AAACAAATCCCAGTATTCCAGGTGAGGGCTTTGGGAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCAAAATGCAGAGAGCTaGGGCCGCCCAGCACTGCCT +
Preference number: 2 (lower is better)
Translates to: PLATAGERTQHQGPGTRAQNAES*GRPALP
Trigger: AGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCCCGCCCAGCACTGCCTaGGAGTTCATTCACGGTTCC +
Preference number: 2 (lower is better)
Translates to: EAPPASSPWQQRESEPSTPPSTA*EFIHGS
Trigger: GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGG...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACCCAGCACCAGGGCCCTaGCACCCGAGCCAGGACCAG +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNPAPGP*HPSQDQ
Trigger: CTGGTCCTGGCTCGGGTGCCAGGGCCCTGGTGCTGG...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CAA 90 bp TTGGGGTTTGGGAGGACCAGAGAGGGCGGGCTTGTCCAGGCCCTGTaGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCAATG +
Preference number: 2 (lower is better)
Translates to: LGFGRTREGGLVQAL*SVCARSGVGDQWAM
Trigger: CATTGCCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGGTCCTCCCAAACCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 90 bp CCCAGGTGCCCCTACGAGCAGCTGGCCCACCTTGGAGCACCTAGGTaGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACA +
Preference number: 2 (lower is better)
Translates to: PRCPYEQLAHLGAPR*EAIATNAFWSPFPT
Trigger: TGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGGTGCTCCAAGGTGGGCCAGCTGCTCGTAGGGGCACCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACGGGGCCGCCCAGCACTaGCTGCGAGTTCATTCACGG +
Preference number: 2 (lower is better)
Translates to: QDQEALSQALGYQSNQVDGAAQH*LRVHSR
Trigger: CCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCC...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCGTGGGCAATGGCCTGTaGGCCACCGGTCTCTACAGA +
Preference number: 2 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLVGNGL*ATGLYR
Trigger: TCTGTAGAGACCGGTGGCCCACAGGCCATTGCCCAC...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCCCAGCACCAGGGCCCTaGCACCCGAGCCAGGACCAG +
Preference number: 2 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTPAPGP*HPSQDQ
Trigger: CTGGTCCTGGCTCGGGTGCCAGGGCCCTGGTGCTGG...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 90 bp CTGATGGCCATCGCCGGCTCAGGGAGGGGGCTGCCTGCAAAGGCATaGTTGCTGTTGTTATTCTGTTCACTGCCCCACTGCCTCCAGTTG +
Preference number: 2 (lower is better)
Translates to: LMAIAGSGRGLPAKA*LLLLFCSLPHCLQL
Trigger: CAACTGGAGGCAGTGGGGCAGTGAACAGAATAACAACAGCAACAATGCCTTTGCAGGCAGCCCCCTCCCTGAGCCGGCGATGGCCATCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR TCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACCAGAGTGGGTGCCCCTaGGTCATGGGACAGAGATGC +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNQSGCP*VMGQRC
Trigger: GCATCTCTGTCCCATGACTCAGGGGCACCCACTCTG...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACGTGGGCAATGGCCTGTaGGCCACCGGTCTCTACAGA +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNVGNGL*ATGLYR
Trigger: TCTGTAGAGACCGGTGGCCCACAGGCCATTGCCCAC...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAGTGGGCAATGGCCTGTaGGCCACCGGTCTCTACAGA +
Preference number: 2 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQVGNGL*ATGLYR
Trigger: TCTGTAGAGACCGGTGGCCCACAGGCCATTGCCCAC...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGGGACCAGTGGGCAATaGCCTGTGGGCCACCGGTCT +
Preference number: 2 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQGTSGQ*PVGHRS
Trigger: AGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACAAAATGCAGAGAGCTaGGGCCGCCCAGCACTGCCT +
Preference number: 2 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEQNAES*GRPALP
Trigger: AGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCCCAGCTTCCAGCCCCTaGCAACAGCGGGAGAGCGAA +
Preference number: 2 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFPASSP*QQRESE
Trigger: TTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGG...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACATTCGACCTTCCCAGGTaGCCCTACGAGCAGCTGGCC +
Preference number: 2 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTFDLPR*PYEQLA
Trigger: GGCCAGCTGCTCGTAGGGGCACCTGGGAAGGTCGAA...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAGCAGCTTTGGGGTTTaGGAGGACCAGAGAGGGCGG +
Preference number: 2 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTSSFGV*EDQRGR
Trigger: CCGCCCTCTCTGGTCCTCCCAAACCCCAAAGCTGCT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCAGCAGCTTTGGGGTTTaGGAGGACCAGAGAGGGCGG +
Preference number: 2 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFSSFGV*EDQRGR
Trigger: CCGCCCTCTCTGGTCCTCCCAAACCCCAAAGCTGCT...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CAA 90 bp CTTTGGGCCTGCCTCCTCTCTACATGGCAATGCCCAATGGTGGGGTaGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCCCAAAGCCCT +
Preference number: 2 (lower is better)
Translates to: LWACLLSTWQCPMVG*LRATRVIWRASQSP
Trigger: AGGGCTTTGGGAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGCCATGTAGAGAGGAGGCAGGCCCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACCGCCCAGCACTGCCTaGGAGTTCATTCACGGTTCC +
Preference number: 2 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTPPSTA*EFIHGS
Trigger: GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACGGCCATAGCCACCAATaGCTTTTGGAGTCCCTTTCC +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNGHSHQ*LLESLS
Trigger: GGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCC...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAAGCAGCTTTGGGGTTTaGGAGGACCAGAGAGGGCGG +
Preference number: 2 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTSSFGV*EDQRGR
Trigger: CCGCCCTCTCTGGTCCTCCCAAACCCCAAAGCTGCT...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACAAAATGCAGAGAGCTaGGGCCGCCCAGCACTGCCT +
Preference number: 2 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTQNAES*GRPALP
Trigger: AGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp CAGACATCAAGAAAAGGCATGCTCAAAATGGTTTCTTCCAAAGGAGGAGAATCAGGGGCCGCCCAGCACTaGCTGCGAGTTCATTCACGG +
Preference number: 2 (lower is better)
Translates to: QTSRKGMLKMVSSKGGESGAAQH*LRVHSR
Trigger: CCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCC...TGATTCTCCTCCTTTGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCTTCGACCTTCCCAGGTaGCCCTACGAGCAGCTGGCC +
Preference number: 2 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFFDLPR*PYEQLA
Trigger: GGCCAGCTGCTCGTAGGGGCACCTGGGAAGGTCGAA...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCGGTGTTGGGGACCAGTaGGCAATGGCCTGTGGGCCA +
Preference number: 2 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFGVGDQ*AMACGP
Trigger: TGGCCCACAGGCCATTGCCCACTGGTCCCCAACACC...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCACTATGAACTATTGCTaGCACTCCTCCCCAGCCACA +
Preference number: 2 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFTMNYC*HSSPAT
Trigger: TGTGGCTGGGGAGGAGTGCCAGCAATAGTTCATAGT...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCAGCAGCTTTGGGGTTTaGGAGGACCAGAGAGGGCGG +
Preference number: 2 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFSSFGV*EDQRGR
Trigger: CCGCCCTCTCTGGTCCTCCCAAACCCCAAAGCTGCT...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCCAAAATGCAGAGAGCTaGGGCCGCCCAGCACTGCCT +
Preference number: 2 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFQNAES*GRPALP
Trigger: AGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTG...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACCTGCAAAGGCATTGTTaGTGTTGTTATTCTGTTCAC +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNLQRHC*CCYSVH
Trigger: GTGAACAGAATAACAACAGCAACAATGCCTTTGCAG...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACCATCAAGAAAAGGCATaGTCAAAATGGTTTCTTCCA +
Preference number: 2 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNHQEKA*SKWFLP
Trigger: TGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATG...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTAGGTACTGCTCCGTGTaGAAAGGGAGCCTGGGTCCA +
Preference number: 2 (lower is better)
Translates to: LFLMRSPEIISSDQIPALRYCSV*KGSLGP
Trigger: TGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCT...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCCCTCACCTGGAATACTaGGATTTGTTTATTTGTTTA +
Preference number: 2 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFPHLEY*DLFICL
Trigger: TAAACAAATAAACAAATCCCAGTATTCCAGGTGAGG...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR GCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTTTTACTATGAACTATTaGTGGCACTCCTCCCCAGCC +
Preference number: 2 (lower is better)
Translates to: LFLMRSPEIISSDQIPALFTMNY*WHSSPA
Trigger: GGCTGGGGAGGAGTGCCAGCAATAGTTCATAGTAAA...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCCCAGAGAGGGCGGGCTaGTCCAGGCCCTGTTGTCAG +
Preference number: 3 (lower is better)
Translates to: EAPPASSPWQQRESEPSTPERAG*SRPCCQ
Trigger: CTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGG...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCTTGTCCAGGCCCTGTaGTCAGTGTGTGCTAGGTCA +
Preference number: 3 (lower is better)
Translates to: PLATAGERTQHQGPGTRALVQAL*SVCARS
Trigger: TGACCTAGCACACACTGACAACAGGGCCTGGACAAG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCACAGACAACACCAAGTaGTCTCCAGGCCCCTGCCCT +
Preference number: 3 (lower is better)
Translates to: EAPPASSPWQQRESEPSTTDNTK*SPGPCP
Trigger: AGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGT...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR TCA 72 bp AGCTTGGGAGCACAAGGCCCAGTCACCAGCCATCCATaGAGCACTCATCGGCAGACTCCCGCATGGGGAGTG +
Preference number: 3 (lower is better)
Translates to: SLGAQGPVTSHP*STHRQTPAWGV
Trigger: CACTCCCCATGCGGGAGTCTGCCGATGAGTGCTTCATGGATGGCTGGTGACTGGGCCTTGTGCTCCCAAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 72 bp AAAGGCAAAATGCAGAGAGCTGGGGCCGCCCAGCACTaGCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCC +
Preference number: 3 (lower is better)
Translates to: KGKMQRAGAAQH*LRVHSRFLAPS
Trigger: GGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTTTGCCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CCA 72 bp GGCTTAGAAGGTACTGCTCCGTGTGCAAAGGGAGCCTaGGTCCACCCACCCACCCTCCATCAGGGAAGGGAT +
Preference number: 3 (lower is better)
Translates to: GLEGTAPCAKGA*VHPPTLHQGRD
Trigger: ATCCCTTCCCTGATGGAGGGTGGGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 72 bp GCTTGCGTATTGGCAGAGGTCCCGGCGGCACAGAAATaGCAGCTTCTGCAGAGGTTCCCTGAGCTGCCCTTC +
Preference number: 3 (lower is better)
Translates to: ACVLAEVPAAQK*QLLQRFPELPF
Trigger: GAAGGGCAGCTCAGGGAACCTCTGCAGAAGCTGCCATTTCTGTGCCGCCGGGACCTCTGCCAATACGCAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 72 bp CACTTGAATGTGAGATTGGCTCTCTGTCTCAGAGTCTaGTGGCCATCGCCGGCTCAGGGAGGGGGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: HLNVRLALCLRV*WPSPAQGGGCL
Trigger: CAGGCAGCCCCCTCCCTGAGCCGGCGATGGCCATCAGACTCTGAGACAGAGAGCCAATCTCACATTCAAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCGTGCTAGGTCAGGTGTaGGGGACCAGTGGGCAATGG +
Preference number: 3 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACVLGQV*GTSGQW
Trigger: CCATTGCCCACTGGTCCCCAACACCTGACCTAGCAC...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCCCAGAGAGGGCGGGCTaGTCCAGGCCCTGTTGTCAG +
Preference number: 3 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIPERAG*SRPCCQ
Trigger: CTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGG...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACACAGACAACACCAAGTaGTCTCCAGGCCCCTGCCCT +
Preference number: 3 (lower is better)
Translates to: QDQEALSQALGYQSNQVDTDNTK*SPGPCP
Trigger: AGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGT...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCCCAGAGAGGGCGGGCTaGTCCAGGCCCTGTTGTCAG +
Preference number: 3 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTPERAG*SRPCCQ
Trigger: CTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGG...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 72 bp CAACAGTCGATATGGCTTAGAAGGTACTGCTCCGTGTaGAAAGGGAGCCTGGGTCCACCCACCCACCCTCCA +
Preference number: 3 (lower is better)
Translates to: QQSIWLRRYCSV*KGSLGPPTHPP
Trigger: TGGAGGGTGGGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCCATATCGACTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 72 bp CCCTCTGCTCAACAGTCGATATGGCTTAGAAGGTACTaGTCCGTGTGCAAAGGGAGCCTGGGTCCACCCACC +
Preference number: 3 (lower is better)
Translates to: PSAQQSIWLRRY*SVCKGSLGPPT
Trigger: GGTGGGTGGACCCAGGCTCCCTTTGCACACGGAGCAGTACCTTCTAAGCCATATCGACTGTTGAGCAGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR GCA 72 bp GCCTCCAGTTGCTATGACAACAGGCCACTTTGGGCCTaGCTCCTCTCTACATGGCAATGCCCAATGGTGGGG +
Preference number: 3 (lower is better)
Translates to: ASSCYDNRPLWA*LLSTWQCPMVG
Trigger: CCCCACCATTGGGCATTGCCATGTAGAGAGGAGGCAGGCCCAAAGTGGCCTGTTGTCATAGCAACTGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 72 bp TGGGACATCAGGGAAACTCCAGCTCGGACCAGAGCTTaGGAGCACAAGGCCCAGTCACCAGCCATCCATGAA +
Preference number: 3 (lower is better)
Translates to: WDIRETPARTRA*EHKAQSPAIHE
Trigger: TTCATGGATGGCTGGTGACTGGGCCTTGTGCTCCCAAGCTCTGGTCCGAGCTGGAGTTTCCCTGATGTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAGTGCTAGGTCAGGTGTaGGGGACCAGTGGGCAATGG +
Preference number: 3 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQVLGQV*GTSGQW
Trigger: CCATTGCCCACTGGTCCCCAACACCTGACCTAGCAC...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCTTGTCCAGGCCCTGTaGTCAGTGTGTGCTAGGTCA +
Preference number: 3 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACLVQAL*SVCARS
Trigger: TGACCTAGCACACACTGACAACAGGGCCTGGACAAG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR TCA 72 bp TTCTGCAGAGGTTCCCTGAGCTGCCCTTCTCTACCATaGTTGATCCTCTCCCACCATTCACGCCCAGGAACC +
Preference number: 3 (lower is better)
Translates to: FCRGSLSCPSLP*LILSHHSRPGT
Trigger: GGTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTCAGGGAACCTCTGCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGTGCTAGGTCAGGTGTaGGGGACCAGTGGGCAATGG +
Preference number: 3 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTVLGQV*GTSGQW
Trigger: CCATTGCCCACTGGTCCCCAACACCTGACCTAGCAC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 72 bp AGGCCACTTTGGGCCTGCCTCCTCTCTACATGGCAATaGCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTT +
Preference number: 3 (lower is better)
Translates to: RPLWACLLSTWQ*PMVGLLRATRV
Trigger: AACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGCCATGTAGAGAGGAGGCAGGCCCAAAGTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 72 bp GCACCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTaGAGTCCCTTTCCCACAGAAATGAAGACCCCCTTG +
Preference number: 3 (lower is better)
Translates to: APRLEAIATNAF*SPFPTEMKTPL
Trigger: CAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CCA 72 bp GAGGAGAATCAAAGCAGAGTGGGTGCCCCTGAGTCATaGGACAGAGATGCAGACAGATGGACGATGTTCTGC +
Preference number: 3 (lower is better)
Translates to: EENQSRVGAPES*DRDADRWTMFC
Trigger: GCAGAACATCGTCCATCTGTCTGCATCTCTGTCCCATGACTCAGGGGCACCCACTCTGCTTTGATTCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 72 bp TCCAAAGGAGGAGAATCAAAGCAGAGTGGGTGCCCCTaGGTCATGGGACAGAGATGCAGACAGATGGACGAT +
Preference number: 3 (lower is better)
Translates to: SKGGESKQSGCP*VMGQRCRQMDD
Trigger: ATCGTCCATCTGTCTGCATCTCTGTCCCATGACTCAGGGGCACCCACTCTGCTTTGATTCTCCTCCTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 72 bp CCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTaGAGGGCTTCCCAAAGCCCTCACCTGGAATACTGG +
Preference number: 3 (lower is better)
Translates to: PMVGLLRATRVI*RASQSPHLEYW
Trigger: CCAGTATTCCAGGTGAGGGCTTTGGGAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR CCA 72 bp GTATATGGGGTAGGGCTGTGGACTGTTGGGACAAAGTaGCCAAGGTCAAGTGAGGAAAGAGCATCACATGAC +
Preference number: 3 (lower is better)
Translates to: VYGVGLWTVGTK*PRSSEERASHD
Trigger: GTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCCACAGCCCTACCCCATATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CCA 72 bp AAGAACCACCATTTGGAAGCAACCCTTCTGAACTACTaGCCTTTCCTTCCTGAGACAGCACACCCTCTGCTC +
Preference number: 3 (lower is better)
Translates to: KNHHLEATLLNY*PFLPETAHPLL
Trigger: GAGCAGAGGGTGTGCTGTCTCAGGAAGGAAAGGCCAGTAGTTCAGAAGGGTTGCTTCCAAATGGTGGTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 72 bp GAAAGCAGAAGAACCACCATTTGGAAGCAACCCTTCTaGACTACTGGCCTTTCCTTCCTGAGACAGCACACC +
Preference number: 3 (lower is better)
Translates to: ESRRTTIWKQPF*TTGLSFLRQHT
Trigger: GGTGTGCTGTCTCAGGAAGGAAAGGCCAGTAGTTCAGAAGGGTTGCTTCCAAATGGTGGTTCTTCTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR TCA 72 bp ACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTaGCTCTGGGACATCAGGGAAACTCCAGCTCGGACC +
Preference number: 3 (lower is better)
Translates to: TRNNFIGSDPCS*LWDIRETPART
Trigger: GGTCCGAGCTGGAGTTTCCCTGATGTCCCAGAGTCAAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTCCAGAGAGGGCGGGCTaGTCCAGGCCCTGTTGTCAG +
Preference number: 3 (lower is better)
Translates to: LFLMRSPEIISSDQIPALPERAG*SRPCCQ
Trigger: CTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGG...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATGGTCTTCTCTAAGTTaGAAACACCCTGGGATCTTA +
Preference number: 3 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEWSSLS*KHPGIL
Trigger: TAAGATCCCAGGGTGTTTCAAACTTAGAGAAGACCA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAAAGGGAAAAGAAAGGTaGATGAGGTGGAGTCCTTCG +
Preference number: 3 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTKGKER*MRWSPS
Trigger: CGAAGGACTCCACCTCATCAACCTTTCTTTTCCCTT...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR GCA 72 bp ACCCACCCACCCTCCATCAGGGAAGGGATACATTATTaGAAAAGGCATTCCTCCCTAAAAGGTACCCGAAAT +
Preference number: 3 (lower is better)
Translates to: THPPSIREGIHY*KRHSSLKGTRN
Trigger: ATTTCGGGTACCTTTTAGGGAGGAATGCCTTTTGCAATAATGTATCCCTTCCCTGATGGAGGGTGGGTGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACATGGTCTTCTCTAAGTTaGAAACACCCTGGGATCTTA +
Preference number: 3 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTWSSLS*KHPGIL
Trigger: TAAGATCCCAGGGTGTTTCAAACTTAGAGAAGACCA...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR-3UTR CAA 90 bp CAGACATCAAGAAAAGGCATGCTCAAAATGGTTTCTTCCAAAGGAGGAGAATCATTTTACTATGAACTATaGCTGGCACTCCTCCCCAGC +
Preference number: 3 (lower is better)
Translates to: QTSRKGMLKMVSSKGGESFYYEL*LALLPS
Trigger: GCTGGGGAGGAGTGCCAGCAATAGTTCATAGTAAAA...TGATTCTCCTCCTTTGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCCTCTGAGGGTTCACTaGGCCAGTGGGCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRAPLRVH*ASGPEP
Trigger: TGGCTCAGGCCCACTGGCCCAGTGAACCCTCAGAGG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGG +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRADRGLP*NRIPDR
Trigger: CCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTC...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCAACAGCCGTACCGTCTaGAATGCCAACCACGGTGGG +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRANSRTV*NANHGG
Trigger: CCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCTCTGGCCAGGAACCGTaGTACCAGCTTCTGACACCC +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRASGQEP*YQLLTP
Trigger: GGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGA...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCGGGCATACTCTGGTTaGGGTACTCAGGAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRARAYSG*GTQEVG
Trigger: TCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCTCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRASERTE*MDASSW
Trigger: CCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGA...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTDRGLP*NRIPDR
Trigger: CCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTC...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCACGGATTCGAGTGGGTaGGGAAGCTGTCTCCAACCT +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRATDSSG*GSCLQP
Trigger: AGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCGTCTCGGGCATACTCTaGTTGGGGTACTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRAVSGIL*LGYSGG
Trigger: ACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGAC...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCCTGGTTCAGAGGAGTaGTCTCGGGCATACTCTGGT +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRAPGSEE*SRAYSG
Trigger: ACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCTTCCTGGGCCAGCCATaGAGGCCGACATGTCAAATA +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRAFLGQP*RPTCQI
Trigger: TATTTGACATGTCGGCCTTCATGGCTGGCCCAGGAA...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCTCTACCCTGTCAATGTaGTTCTTGAGCTCTGGCCGC +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRASTLSM*FLSSGR
Trigger: GCGGCCAGAGCTCAAGAATCACATTGACAGGGTAGA...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCCCCCGAGTGATGTTCTaGAGGGTGATGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTPRVMF*RVMELQ
Trigger: CTGCAGCTCCATCACCCTTCAGAACATCACTCGGGG...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCGGGATAAACTGGAGGTaGCGACAACTGCCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTGINWR*RQLPEP
Trigger: GGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCC...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCAACACACTGGAAGTCTaGGGGACGTGGCTTCCATTG +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRANTLEV*GTWLPL
Trigger: CAATGGAAGCCACGTCCCCCAGACTTCCAGTGTGTT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRASHGLC*RCNGWR
Trigger: TCTCCAGCCATTGCACCTCCAACAGAGACCATGGCT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGCGTTGCTGGCTTTaGCGTGGACACTCGTGGCTT +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTRRCWL*RGHSWL
Trigger: AAGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCT...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCCAGGCTCCAGAGCATTaGAGAAGGCAGGACGAGGCT +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTQAPEH*RRQDEA
Trigger: AGCCTCGTCCTGCCTTCTCCAATGCTCTGGAGCCTG...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCCGGGCATACTCTGGTTaGGGTACTCAGGAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTRAYSG*GTQEVG
Trigger: TCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCG...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCATGGGGTCATGTTCTTaGGACGGGAGCCCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTMGSCS*DGSPCP
Trigger: AGGGCAAGGGCTCCCGTCCCAAGAACATGACCCCAT...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCTTGGGGTCATCTTGGTaGGGTCAGCATCCAGAATCA +
Preference number: 4 (lower is better)
Translates to: PLATAGERTQHQGPGTRALGSSW*GQHPES
Trigger: TGATTCTGGATGCTGACCTCACCAAGATGACCCCAA...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACCTCCATGGGAGCCGTaGAGGGTGGGGGTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLPPWEP*RVGVAD
Trigger: ATCAGCCACCCCCACCCTTCACGGCTCCCATGGAGG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTSERTE*MDASSW
Trigger: CCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCGGCCTCCTTCCCTGCTaGAGACACCTTGATGATCTC +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTGLLPC*RHLDDL
Trigger: GAGATCATCAAGGTGTCTGCAGCAGGGAAGGAGGCC...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTCCAGGAGAGGGTGGTaGCACAGGGATAAACTGGAG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTSRRGW*HRDKLE
Trigger: CTCCAGTTTATCCCTGTGGCACCACCCTCTCCTGGA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTGGCTGATAGGGAGGTaGGTTAGGATCCTCATCCCG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTWLIGR*VRILIP
Trigger: CGGGATGAGGATCCTAACGCACCTCCCTATCAGCCA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCACGGATTCGAGTGGGTaGGGAAGCTGTCTCCAACCT +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTTDSSG*GSCLQP
Trigger: AGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGT...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTGTCTGGAACCTCTGTaGCTGGTGCAGCTGAGCTTC +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTCLEPL*LVQLSF
Trigger: GAAGCTCAGCTGCACCAGCCACAGAGGTTCCAGACA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAGGGAGCCGTGAAGGGTaGGGGTGGCTGATAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLGSREG*GWLIGR
Trigger: CCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCC...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp TCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTaGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGG +
Preference number: 4 (lower is better)
Translates to: SRPCCQCVLGQV*GTSGQWPVGHR
Trigger: CCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp GGGAGGACCAGAGAGGGCGGGCTTGTCCAGGCCCTGTaGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAG +
Preference number: 4 (lower is better)
Translates to: GRTREGGLVQAL*SVCARSGVGDQ
Trigger: CTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGGTCCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCGGTGCTGGATCCCCTaGAAGCCTGGCCTTGAACCG +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPARCWIP*KPGLEP
Trigger: CGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCCTCTGAGGGTTCACTaGGCCAGTGGGCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAPLRVH*ASGPEP
Trigger: TGGCTCAGGCCCACTGGCCCAGTGAACCCTCAGAGG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTGCCCGTACAGACTGTaGCTCATTGTGGTCTTCAGG +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTCPYRL*LIVVFR
Trigger: CCTGAAGACCACAATGAGCCACAGTCTGTACGGGCA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCGGGAGCCGTGAAGGGTaGGGGTGGCTGATAGGGAGG +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCGSREG*GWLIGR
Trigger: CCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCC...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCCTCGCGTCCGAATGGTaGCCGTGGGCTTCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSLASEW*PWASLE
Trigger: TTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAG...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCTGCGGCTCAGCCCTATaGTCTGCTCCTTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCCGSAL*SAPWGR
Trigger: CCTGCCCCAAGGAGCAGATCATAGGGCTGAGCCGCA...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACCTGGCCTTGAACCGTaGAGGAGCCTTGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLPGLEP*RSLVPL
Trigger: CAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCCGGTGCTGGATCCCCTaGAAGCCTGGCCTTGAACCG +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSRCWIP*KPGLEP
Trigger: CGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCG...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCCCTCTGAGGGTTCACTaGGCCAGTGGGCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLPLRVH*ASGPEP
Trigger: TGGCTCAGGCCCACTGGCCCAGTGAACCCTCAGAGG...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCCCTCTGAGGGTTCACTaGGCCAGTGGGCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSPLRVH*ASGPEP
Trigger: TGGCTCAGGCCCACTGGCCCAGTGAACCCTCAGAGG...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTTTCTTTGCATTTCCTaGGCCAGCCATGAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTFLCIS*ASHEGR
Trigger: TCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTTGAGCTCTGGCCGCTaGTTAGGTTCTCCCCCACGG +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPALSSGR*LGSPPR
Trigger: CCGTGGGGGAGAACCTAACCAGCGGCCAGAGCTCAA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATTGAGCTCTGGCCGCTaGTTAGGTTCTCCCCCACGG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLLSSGR*LGSPPR
Trigger: CCGTGGGGGAGAACCTAACCAGCGGCCAGAGCTCAA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCGTGAAGGGTGGGGGTaGCTGATAGGGAGGTGCGTT +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAREGWG*LIGRCV
Trigger: AACGCACCTCCCTATCAGCCACCCCCACCCTTCACG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACRDGGS*MAVVGG
Trigger: ACCCCCAACCACGGCCATTCAGGAGCCACCATCGCG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCTCGCGTCCGAATGGTaGCCGTGGGCTTCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGLASEW*PWASLE
Trigger: TTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAG...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCCTCCATGGGAGCCGTaGAGGGTGGGGGTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDPPWEP*RVGVAD
Trigger: ATCAGCCACCCCCACCCTTCACGGCTCCCATGGAGG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACAACCTGGTGATGGGTaGTTTGGTGGTGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLQPGDG*FGGDSG
Trigger: CCCCGAGTCACCACCAAAGCACCCATCACCAGGTTG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTCAGCCCTATGATCTaGTCCTTGGGGCAGGGCTCC +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCLSPMI*SLGQGS
Trigger: GGAGCCCTGCCCCAAGGAGCAGATCATAGGGCTGAG...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCTCAGCCCTATGATCTaGTCCTTGGGGCAGGGCTCC +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLSPMI*SLGQGS
Trigger: GGAGCCCTGCCCCAAGGAGCAGATCATAGGGCTGAG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGGTGTAGGTGTGGCGTaGATCTGCCTCCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPGVGVA*ICLRSR
Trigger: ACGACTCCGGAGGCAGATCCACGCCACACCTACACC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCATGGTGGCTCCTGAATaGCCGTGGTTGGGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAMVAPE*PWLGVQ
Trigger: TTGGACCCCCAACCACGGCCATTCAGGAGCCACCAT...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGG +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPDRGLP*NRIPDR
Trigger: CCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCGACACCCGAGTAGGCTaGATAGGGCCCAGAGTTGGG +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSDTRVG*IGPRVG
Trigger: CCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTC...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGACACCCGAGTAGGCTaGATAGGGCCCAGAGTTGGG +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPDTRVG*IGPRVG
Trigger: CCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACAGGCTCCAGAGCATTaGAGAAGGCAGGACGAGGCT +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLQAPEH*RRQDEA
Trigger: AGCCTCGTCCTGCCTTCTCCAATGCTCTGGAGCCTG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCGCGACCACCACGGCTaGGATAACGGTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPRDHHG*DNGVQV
Trigger: TACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCCGCGACCACCACGGCTaGGATAACGGTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSRDHHG*DNGVQV
Trigger: TACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCG...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCGGGGTACTCAGGAGGTaGGAGGGGAGCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSGVLRR*EGSLLF
Trigger: GAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCC...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCGGGCATACTCTGGTTaGGGTACTCAGGAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPARAYSG*GTQEVG
Trigger: TCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCCGTGAAGGGTGGGGGTaGCTGATAGGGAGGTGCGTT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLREGWG*LIGRCV
Trigger: AACGCACCTCCCTATCAGCCACCCCCACCCTTCACG...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp CAGCTTTGGGGTTTGGGAGGACCAGAGAGGGCGGGCTaGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAG +
Preference number: 4 (lower is better)
Translates to: QLWGLGGPERAG*SRPCCQCVLGQ
Trigger: CTGACCTAGCACACACTGACAACAGGGCCTGGACAAGCCCGCCCTCTCTGGTCCTCCCAAACCCCAAAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSERTE*MDASSW
Trigger: CCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTTAAATCCGTTGGAATaGTCACTCGAAATGAGCGCC +
Preference number: 4 (lower is better)
Translates to: EAPPASSPWQQRESEPSTLNPLE*SLEMSA
Trigger: GGCGCTCATTTCGAGTGAGCATTCCAACGGATTTAA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAGGCCTCCTTCCCTGCTaGAGACACCTTGATGATCTC +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLGLLPC*RHLDDL
Trigger: GAGATCATCAAGGTGTCTGCAGCAGGGAAGGAGGCC...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCCTGGCCTTGAACCGTaGAGGAGCCTTGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGPGLEP*RSLVPL
Trigger: CAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGG...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCGGTGCTGGATCCCCTaGAAGCCTGGCCTTGAACCG +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDRCWIP*KPGLEP
Trigger: CGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCTCAGCCCTATGATCTaGTCCTTGGGGCAGGGCTCC +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGLSPMI*SLGQGS
Trigger: GGAGCCCTGCCCCAAGGAGCAGATCATAGGGCTGAG...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCGGGATAAACTGGAGGTaGCGACAACTGCCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSGINWR*RQLPEP
Trigger: GGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCC...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCGGGATAAACTGGAGGTaGCGACAACTGCCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCGINWR*RQLPEP
Trigger: GGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCC...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATCCAGGAGAGGGTGGTaGCACAGGGATAAACTGGAG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSRRGW*HRDKLE
Trigger: CTCCAGTTTATCCCTGTGGCACCACCCTCTCCTGGA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATGGCTGATAGGGAGGTaGGTTAGGATCCTCATCCCG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLWLIGR*VRILIP
Trigger: CGGGATGAGGATCCTAACGCACCTCCCTATCAGCCA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAG +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAVGTAS*KSERTE
Trigger: CTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCAC...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGDRGLP*NRIPDR
Trigger: CCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTC...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCAGTGTTGGGCGAATCTaGCCAGGAACCGTGGTACCA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPASVGRI*PGTVVP
Trigger: TGGTACCACGGTTCCTGGCCAGATTCGCCCAACACT...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACGGTGACTCGGGGCACTaGTCGGGGTGTCCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDGDSGH*SGCPWF
Trigger: AAACCACGGACACCCCGACCAGTGCCCCGAGTCACC...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCAGGCTCCAGAGCATTaGAGAAGGCAGGACGAGGCT +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCQAPEH*RRQDEA
Trigger: AGCCTCGTCCTGCCTTCTCCAATGCTCTGGAGCCTG...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCGCTTCCAGGAGAGGGTaGTGCCACAGGGATAAACTG +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAASRRG*CHRDKL
Trigger: CAGTTTATCCCTGTGGCACCACCCTCTCCTGGAAGC...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATGTCTGGAACCTCTGTaGCTGGTGCAGCTGAGCTTC +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLCLEPL*LVQLSF
Trigger: GAAGCTCAGCTGCACCAGCCACAGAGGTTCCAGACA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTGTCTGGAACCTCTGTaGCTGGTGCAGCTGAGCTTC +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPACLEPL*LVQLSF
Trigger: GAAGCTCAGCTGCACCAGCCACAGAGGTTCCAGACA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSPTVS*FRGVVS
Trigger: CGAGACCACTCCTCTGAACCAGGACACTGTGGGAGA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCATGGGGTCATGTTCTTaGGACGGGAGCCCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSMGSCS*DGSPCP
Trigger: AGGGCAAGGGCTCCCGTCCCAAGAACATGACCCCAT...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTTCCTGGGCCAGCCATaGAGGCCGACATGTCAAATA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAFLGQP*RPTCQI
Trigger: TATTTGACATGTCGGCCTTCATGGCTGGCCCAGGAA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCCGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRDGGS*MAVVGG
Trigger: ACCCCCAACCACGGCCATTCAGGAGCCACCATCGCG...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTERDGGS*MAVVGG
Trigger: ACCCCCAACCACGGCCATTCAGGAGCCACCATCGCG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTCTACCCTGTCAATGTaGTTCTTGAGCTCTGGCCGC +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPASTLSM*FLSSGR
Trigger: GCGGCCAGAGCTCAAGAATCACATTGACAGGGTAGA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCTTGTGGGCGCTTGTaGACATGGATCTCGAAGGCA +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCPCGRL*TWISKA
Trigger: TGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGG...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCCCCGAGTGATGTTCTaGAGGGTGATGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGPRVMF*RVMELQ
Trigger: CTGCAGCTCCATCACCCTTCAGAACATCACTCGGGG...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAAACATACGGAGGGGGTaGTCGGTATGGGGTCATGTT +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLNIRRG*SVWGHV
Trigger: AACATGACCCCATACCGATCACCCCCTCCGTATGTT...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSSERTE*MDASSW
Trigger: CCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGA...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLGLCWR*NGWRCR
Trigger: CCTACATCTCCAGCCATTGCACCTCCAACAGAGACC...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCCTGGCCTTGAACCGTaGAGGAGCCTTGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACPGLEP*RSLVPL
Trigger: CAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCGGAGCCTTCTCTTCCTaGAAGATGAGCGGCATGCTG +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLGAFSS*KMSGML
Trigger: CAGCATGCCGCTCATCTTGCAGGAAGAGAAGGCTCC...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGAATGCCAACCACGGTaGGAACAGCCTCCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPECQPR*EQPPGS
Trigger: ACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCGAATGCCAACCACGGTaGGAACAGCCTCCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLECQPR*EQPPGS
Trigger: ACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTC...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCGCCTCCGGAGTCGTTTaGGGAGAGTGGGCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCASGVV*GEWASY
Trigger: ATAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGC...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCGGTGTAGGTGTGGCGTaGATCTGCCTCCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACGVGVA*ICLRSR
Trigger: ACGACTCCGGAGGCAGATCCACGCCACACCTACACC...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPASHGLC*RCNGWR
Trigger: TCTCCAGCCATTGCACCTCCAACAGAGACCATGGCT...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSHGLC*RCNGWR
Trigger: TCTCCAGCCATTGCACCTCCAACAGAGACCATGGCT...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCGACACCCGAGTAGGCTaGATAGGGCCCAGAGTTGGG +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACDTRVG*IGPRVG
Trigger: CCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTC...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTCTGGCCAGGAACCGTaGTACCAGCTTCTGACACCC +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGSGQEP*YQLLTP
Trigger: GGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCGTGATTCTTGAGCTCTaGCCGCTGGTTAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAVILEL*PLVRFS
Trigger: GGAGAACCTAACCAGCGGCCAGAGCTCAAGAATCAC...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCGTCTCGGGCATACTCTaGTTGGGGTACTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLVSGIL*LGYSGG
Trigger: ACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGAC...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCG +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLSPTVS*FRGVVS
Trigger: CGAGACCACTCCTCTGAACCAGGACACTGTGGGAGA...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCGTGAAGGGTGGGGGTaGCTGATAGGGAGGTGCGTT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACREGWG*LIGRCV
Trigger: AACGCACCTCCCTATCAGCCACCCCCACCCTTCACG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAGGGAGCCGTGAAGGGTaGGGGTGGCTGATAGGGAGG +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEGSREG*GWLIGR
Trigger: CCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCC...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAGGGAGCCGTGAAGGGTaGGGGTGGCTGATAGGGAGG +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQGSREG*GWLIGR
Trigger: CCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCC...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGAATGCTCACTCGAAATaGGCGCCCGACAACAGCCGT +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGNAHSK*APDNSR
Trigger: ACGGCTGTTGTCGGGCGCTCATTTCGAGTGAGCATT...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCGTGGTACCAGCTTCTaGCACCCGAGTAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDRGTSF*HPSRLD
Trigger: ATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCCCCGAGTGATGTTCTaGAGGGTGATGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACPRVMF*RVMELQ
Trigger: CTGCAGCTCCATCACCCTTCAGAACATCACTCGGGG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCTGCGGCTCAGCCCTATaGTCTGCTCCTTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAICGSAL*SAPWGR
Trigger: CCTGCCCCAAGGAGCAGATCATAGGGCTGAGCCGCA...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCAACATACGGAGGGGGTaGTCGGTATGGGGTCATGTT +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSNIRRG*SVWGHV
Trigger: AACATGACCCCATACCGATCACCCCCTCCGTATGTT...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCGLCWR*NGWRCR
Trigger: CCTACATCTCCAGCCATTGCACCTCCAACAGAGACC...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCAACCTGGTGATGGGTaGTTTGGTGGTGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDQPGDG*FGGDSG
Trigger: CCCCGAGTCACCACCAAAGCACCCATCACCAGGTTG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGVGTAS*KSERTE
Trigger: CTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCAC...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGGAATGCCAACCACGGTaGGAACAGCCTCCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGECQPR*EQPPGS
Trigger: ACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTC...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCAACAGCCGTACCGTCTaGAATGCCAACCACGGTGGG +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACNSRTV*NANHGG
Trigger: CCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTT...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCAACACACTGGAAGTCTaGGGGACGTGGCTTCCATTG +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCNTLEV*GTWLPL
Trigger: CAATGGAAGCCACGTCCCCCAGACTTCCAGTGTGTT...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTAACACACTGGAAGTCTaGGGGACGTGGCTTCCATTG +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPNTLEV*GTWLPL
Trigger: CAATGGAAGCCACGTCCCCCAGACTTCCAGTGTGTT...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTGCCCGTACAGACTGTaGCTCATTGTGGTCTTCAGG +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLCPYRL*LIVVFR
Trigger: CCTGAAGACCACAATGAGCCACAGTCTGTACGGGCA...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLCKDSH*LISSTG
Trigger: GCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACA...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPCKDSH*LISSTG
Trigger: GCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACA...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCGAGTGGGCTTCTTATTaGCAATGTGCCAACCCACCA +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAEWASY*QCANPP
Trigger: TGGTGGGTTGGCACATTGCCAATAAGAAGCCCACTC...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGGCCTCCGGAGTCGTTTaGGGAGAGTGGGCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGASGVV*GEWASY
Trigger: ATAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGC...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCATGGTGGCTCCTGAATaGCCGTGGTTGGGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACMVAPE*PWLGVQ
Trigger: TTGGACCCCCAACCACGGCCATTCAGGAGCCACCAT...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACTCTGGCCAGGAACCGTaGTACCAGCTTCTGACACCC +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDSGQEP*YQLLTP
Trigger: GGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGA...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCGTGATTCTTGAGCTCTaGCCGCTGGTTAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: KCRELGPPSTACEFIHGSVILEL*PLVRFS
Trigger: GGAGAACCTAACCAGCGGCCAGAGCTCAAGAATCAC...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGTGATTCTTGAGCTCTaGCCGCTGGTTAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPVILEL*PLVRFS
Trigger: GGAGAACCTAACCAGCGGCCAGAGCTCAAGAATCAC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCAGGCTCCAGAGCATTaGAGAAGGCAGGACGAGGCT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACQAPEH*RRQDEA
Trigger: AGCCTCGTCCTGCCTTCTCCAATGCTCTGGAGCCTG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGSPTVS*FRGVVS
Trigger: CGAGACCACTCCTCTGAACCAGGACACTGTGGGAGA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp ATCGCCGGCTCAGGGAGGGGGCTGCCTGCAAAGGCATaGTTGCTGTTGTTATTCTGTTCACTGCCCCACTGC +
Preference number: 4 (lower is better)
Translates to: IAGSGRGLPAKA*LLLLFCSLPHC
Trigger: GCAGTGGGGCAGTGAACAGAATAACAACAGCAACAATGCCTTTGCAGGCAGCCCCCTCCCTGAGCCGGCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTTTGGGGTCATCTTGGTaGGGTCAGCATCCAGAATCA +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLGSSW*GQHPES
Trigger: TGATTCTGGATGCTGACCTCACCAAGATGACCCCAA...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGCGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQRDGGS*MAVVGG
Trigger: ACCCCCAACCACGGCCATTCAGGAGCCACCATCGCG...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACCGTGGTACCAGCTTCTaGCACCCGAGTAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNRGTSF*HPSRLD
Trigger: ATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACG...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACCTCCATGGGAGCCGTaGAGGGTGGGGGTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTPPWEP*RVGVAD
Trigger: ATCAGCCACCCCCACCCTTCACGGCTCCCATGGAGG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACTCAGCCCTATGATCTaGTCCTTGGGGCAGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTELSPMI*SLGQGS
Trigger: GGAGCCCTGCCCCAAGGAGCAGATCATAGGGCTGAG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCGAATGCCAACCACGGTaGGAACAGCCTCCTGGAAGT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACECQPR*EQPPGS
Trigger: ACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTC...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTGCCCGTACAGACTGTaGCTCATTGTGGTCTTCAGG +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGCPYRL*LIVVFR
Trigger: CCTGAAGACCACAATGAGCCACAGTCTGTACGGGCA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCATCGATCCTTTGCTTTaGGGTCATCTTGGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAIDPLL*GHLGEV
Trigger: GACCTCACCAAGATGACCCCAAAGCAAAGGATCGAT...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGAGTGGGCTTCTTATTaGCAATGTGCCAACCCACCA +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPEWASY*QCANPP
Trigger: TGGTGGGTTGGCACATTGCCAATAAGAAGCCCACTC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACGCCTCCGGAGTCGTTTaGGGAGAGTGGGCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDASGVV*GEWASY
Trigger: ATAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGC...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCTGAATGGCCGTGGTTaGGGGTCCAATGGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDLNGRG*GSNGSN
Trigger: GTTACTGCCATTGGACCCCCAACCACGGCCATTCAG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCAGGAATTGTCAGTGTTaGGCGAATCTGGCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCRNCQC*ANLARN
Trigger: GTTCCTGGCCAGATTCGCCCAACACTGACAATTCCT...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCGGTGACTCGGGGCACTaGTCGGGGTGTCCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTGDSGH*SGCPWF
Trigger: AAACCACGGACACCCCGACCAGTGCCCCGAGTCACC...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCTTGAGCTCTGGCCGCTaGTTAGGTTCTCCCCCACGG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAILSSGR*LGSPPR
Trigger: CCGTGGGGGAGAACCTAACCAGCGGCCAGAGCTCAA...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAGGGGTACTCAGGAGGTaGGAGGGGAGCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEGVLRR*EGSLLF
Trigger: GAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCC...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACGTGAAGGGTGGGGGTaGCTGATAGGGAGGTGCGTT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEREGWG*LIGRCV
Trigger: AACGCACCTCCCTATCAGCCACCCCCACCCTTCACG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACCCCGAGTGATGTTCTaGAGGGTGATGGAGCTGCAG +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEPRVMF*RVMELQ
Trigger: CTGCAGCTCCATCACCCTTCAGAACATCACTCGGGG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGTGCGGCTCAGCCCTATaGTCTGCTCCTTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQCGSAL*SAPWGR
Trigger: CCTGCCCCAAGGAGCAGATCATAGGGCTGAGCCGCA...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPANRSIL*FGVILV
Trigger: CACCAAGATGACCCCAAAGCAAAGGATCGATCTGTT...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCCCTGGCCTTGAACCGTaGAGGAGCCTTGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFPGLEP*RSLVPL
Trigger: CAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGG...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGCGGTGCTGGATCCCCTaGAAGCCTGGCCTTGAACCG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQRCWIP*KPGLEP
Trigger: CGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCG...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGCTGCCCTTCTCTACCATGATTGATCCTCTCCCACCATTCACGCCCAGGAACGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAG +
Preference number: 4 (lower is better)
Translates to: ELPFSTMIDPLPPFTPRNVGTAS*KSERTE
Trigger: CTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCAC...GTTCCTGGGCGTGAATGGTGGGAGAGGATCAATCATGGTAGAGAAGGGCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAAACAGCCGTACCGTCTaGAATGCCAACCACGGTGGG +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQNSRTV*NANHGG
Trigger: CCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTT...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACCKDSH*LISSTG
Trigger: GCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACA...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTATCGATCCTTTGCTTTaGGGTCATCTTGGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPIDPLL*GHLGEV
Trigger: GACCTCACCAAGATGACCCCAAAGCAAAGGATCGAT...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCATGGTGGCTCCTGAATaGCCGTGGTTGGGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIMVAPE*PWLGVQ
Trigger: TTGGACCCCCAACCACGGCCATTCAGGAGCCACCAT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATCTGGCCAGGAACCGTaGTACCAGCTTCTGACACCC +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTESGQEP*YQLLTP
Trigger: GGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGAGGAATTGTCAGTGTTaGGCGAATCTGGCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGRNCQC*ANLARN
Trigger: GTTCCTGGCCAGATTCGCCCAACACTGACAATTCCT...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCAGGCGTTGCTGGCTTTaGCGTGGACACTCGTGGCTT +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRRCWL*RGHSWL
Trigger: AAGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACGTGATTCTTGAGCTCTaGCCGCTGGTTAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: QDQEALSQALGYQSNQVDVILEL*PLVRFS
Trigger: GGAGAACCTAACCAGCGGCCAGAGCTCAAGAATCAC...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCCGCGACCACCACGGCTaGGATAACGGTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTRDHHG*DNGVQV
Trigger: TACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCG...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTTTAATAAAGGTGGCCTaGTCCTCAAGGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLIKVA*SSRVSL
Trigger: CAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAA...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCGGGGTACTCAGGAGGTaGGAGGGGAGCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTGVLRR*EGSLLF
Trigger: GAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCC...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCCGGGCATACTCTGGTTaGGGTACTCAGGAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRAYSG*GTQEVG
Trigger: TCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCG...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCGTGAAGTTCTACTTCTaGGAAGCTCTGCATTCTGTT +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAVKFYF*EALHSV
Trigger: AACAGAATGCAGAGCTTCTCAGAAGTAGAACTTCAC...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCTGTTGCTGTTAAACTaGACCCACGATTTCTCACCT +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLLLLN*THDFSP
Trigger: AGGTGAGAAATCGTGGGTTCAGTTTAACAGCAACAG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACCTTGTGGGCGCTTGTaGACATGGATCTCGAAGGCA +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEPCGRL*TWISKA
Trigger: TGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCGGAGCCTTCTCTTCCTaGAAGATGAGCGGCATGCTG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIGAFSS*KMSGML
Trigger: CAGCATGCCGCTCATCTTGCAGGAAGAGAAGGCTCC...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCTGGCTGATAGGGAGGTaGGTTAGGATCCTCATCCCG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIWLIGR*VRILIP
Trigger: CGGGATGAGGATCCTAACGCACCTCCCTATCAGCCA...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAACAGCCGTACCGTCTaGAATGCCAACCACGGTGGG +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTNSRTV*NANHGG
Trigger: CCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGGTGTAGGTGTGGCGTaGATCTGCCTCCGGAGTCGT +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTGVGVA*ICLRSR
Trigger: ACGACTCCGGAGGCAGATCCACGCCACACCTACACC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCATGGTGGCTCCTGAATaGCCGTGGTTGGGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTMVAPE*PWLGVQ
Trigger: TTGGACCCCCAACCACGGCCATTCAGGAGCCACCAT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGACACCCGAGTAGGCTaGATAGGGCCCAGAGTTGGG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQDTRVG*IGPRVG
Trigger: CCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAAGTGTTGGGCGAATCTaGCCAGGAACCGTGGTACCA +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTESVGRI*PGTVVP
Trigger: TGGTACCACGGTTCCTGGCCAGATTCGCCCAACACT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCAGGAATTGTCAGTGTTaGGCGAATCTGGCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACRNCQC*ANLARN
Trigger: GTTCCTGGCCAGATTCGCCCAACACTGACAATTCCT...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCTTTGTGGTAGTTGTTaGAGGAGTAATAACGGCTGT +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPALCGSC*RSNNGC
Trigger: ACAGCCGTTATTACTCCTCCAACAACTACCACAAAG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAGGCGTTGCTGGCTTTaGCGTGGACACTCGTGGCTT +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTRRCWL*RGHSWL
Trigger: AAGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAACGGATTCGAGTGGGTaGGGAAGCTGTCTCCAACCT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTETDSSG*GSCLQP
Trigger: AGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGTTGAGCTCTGGCCGCTaGTTAGGTTCTCCCCCACGG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQLSSGR*LGSPPR
Trigger: CCGTGGGGGAGAACCTAACCAGCGGCCAGAGCTCAA...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCGCTTCCAGGAGAGGGTaGTGCCACAGGGATAAACTG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIASRRG*CHRDKL
Trigger: CAGTTTATCCCTGTGGCACCACCCTCTCCTGGAAGC...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGGGGTACTCAGGAGGTaGGAGGGGAGCCTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQGVLRR*EGSLLF
Trigger: GAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAGTCTCGGGCATACTCTaGTTGGGGTACTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEVSGIL*LGYSGG
Trigger: ACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGAC...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCGTCTCGGGCATACTCTaGTTGGGGTACTCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIVSGIL*LGYSGG
Trigger: ACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGAC...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAACCTGGTTCAGAGGAGTaGTCTCGGGCATACTCTGGT +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQPGSEE*SRAYSG
Trigger: ACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGG...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACCTGGTTCAGAGGAGTaGTCTCGGGCATACTCTGGT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEPGSEE*SRAYSG
Trigger: ACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCG +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTESPTVS*FRGVVS
Trigger: CGAGACCACTCCTCTGAACCAGGACACTGTGGGAGA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp GTCTTGACTAAAGGCAGAAGGAGCACTAGAAGCAGCTaGCGTATTGGCAGAGGTCCCGGCGGCACAGAAATG +
Preference number: 4 (lower is better)
Translates to: VLTKGRRSTRSS*RIGRGPGGTEM
Trigger: CATTTCTGTGCCGCCGGGACCTCTGCCAATACGCAAGCTGCTTCTAGTGCTCCTTCTGCCTTTAGTCAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAATGCTCACTCGAAATaGGCGCCCGACAACAGCCGT +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTNAHSK*APDNSR
Trigger: ACGGCTGTTGTCGGGCGCTCATTTCGAGTGAGCATT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCGTGAAGTTCTACTTCTaGGAAGCTCTGCATTCTGTT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLVKFYF*EALHSV
Trigger: AACAGAATGCAGAGCTTCTCAGAAGTAGAACTTCAC...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGCGTGGTACCAGCTTCTaGCACCCGAGTAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQRGTSF*HPSRLD
Trigger: ATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACG...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTTAAATCCGTTGGAATaGTCACTCGAAATGAGCGCC +
Preference number: 4 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGLNPLE*SLEMSA
Trigger: GGCGCTCATTTCGAGTGAGCATTCCAACGGATTTAA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACAACCTGGTGATGGGTaGTTTGGTGGTGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTQPGDG*FGGDSG
Trigger: CCCCGAGTCACCACCAAAGCACCCATCACCAGGTTG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGGGATAAACTGGAGGTaGCGACAACTGCCAGAGCCC +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQGINWR*RQLPEP
Trigger: GGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTCCAGGAGAGGGTGGTaGCACAGGGATAAACTGGAG +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTSRRGW*HRDKLE
Trigger: CTCCAGTTTATCCCTGTGGCACCACCCTCTCCTGGA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAG +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTVGTAS*KSERTE
Trigger: CTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCAC...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCTTTGTGGTAGTTGTTaGAGGAGTAATAACGGCTGT +
Preference number: 4 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLCGSC*RSNNGC
Trigger: ACAGCCGTTATTACTCCTCCAACAACTACCACAAAG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCCTTTGTGGTAGTTGTTaGAGGAGTAATAACGGCTGT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLLCGSC*RSNNGC
Trigger: ACAGCCGTTATTACTCCTCCAACAACTACCACAAAG...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATCATGTTTTCCCACATaGCTGCTGTCAGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTESCFPT*LLSGRP
Trigger: TGGCCTGCCTGACAGCAGCCATGTGGGAAAACATGA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAATGGGGTCATGTTCTTaGGACGGGAGCCCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTMGSCS*DGSPCP
Trigger: AGGGCAAGGGCTCCCGTCCCAAGAACATGACCCCAT...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp TGCCTCCTCTCTACATGGCAATGCCCAATGGTGGGGTaGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: CLLSTWQCPMVG*LRATRVIWRAS
Trigger: GGAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGCCATGTAGAGAGGAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAATGCTCACTCGAAATaGGCGCCCGACAACAGCCGT +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQNAHSK*APDNSR
Trigger: ACGGCTGTTGTCGGGCGCTCATTTCGAGTGAGCATT...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTTCCTGGGCCAGCCATaGAGGCCGACATGTCAAATA +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTFLGQP*RPTCQI
Trigger: TATTTGACATGTCGGCCTTCATGGCTGGCCCAGGAA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACCTTGTGGGCGCTTGTaGACATGGATCTCGAAGGCA +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTPCGRL*TWISKA
Trigger: TGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCAAAGCAATTTTCTTGTaGATGTCATTCACCACCGGT +
Preference number: 4 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLKAIFL*MSFTTG
Trigger: ACCGGTGGTGAATGACATTCACAAGAAAATTGCTTT...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCTTAAATCCGTTGGAATaGTCACTCGAAATGAGCGCC +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACLNPLE*SLEMSA
Trigger: GGCGCTCATTTCGAGTGAGCATTCCAACGGATTTAA...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGGCCTCCTTCCCTGCTaGAGACACCTTGATGATCTC +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTGLLPC*RHLDDL
Trigger: GAGATCATCAAGGTGTCTGCAGCAGGGAAGGAGGCC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACNRSIL*FGVILV
Trigger: CACCAAGATGACCCCAAAGCAAAGGATCGATCTGTT...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGGAGCCTTCTCTTCCTaGAAGATGAGCGGCATGCTG +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTGAFSS*KMSGML
Trigger: CAGCATGCCGCTCATCTTGCAGGAAGAGAAGGCTCC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACATGGCTGATAGGGAGGTaGGTTAGGATCCTCATCCCG +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTWLIGR*VRILIP
Trigger: CGGGATGAGGATCCTAACGCACCTCCCTATCAGCCA...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCAGAGAACTGAGTGCATaGACGCCTCAAGCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRELSA*TPQAGS
Trigger: AGAACCAGCTTGAGGCGTCCATGCACTCAGTTCTCT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGC +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTCKDSH*LISSTG
Trigger: GCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAGAGTGGGCTTCTTATTaGCAATGTGCCAACCCACCA +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEEWASY*QCANPP
Trigger: TGGTGGGTTGGCACATTGCCAATAAGAAGCCCACTC...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAGAGTGGGCTTCTTATTaGCAATGTGCCAACCCACCA +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQEWASY*QCANPP
Trigger: TGGTGGGTTGGCACATTGCCAATAAGAAGCCCACTC...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACTGAATGGCCGTGGTTaGGGGTCCAATGGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTLNGRG*GSNGSN
Trigger: GTTACTGCCATTGGACCCCCAACCACGGCCATTCAG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAACGGATTCGAGTGGGTaGGGAAGCTGTCTCCAACCT +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTTDSSG*GSCLQP
Trigger: AGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGT...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTCATGTTTTCCCACATaGCTGCTGTCAGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTSCFPT*LLSGRP
Trigger: TGGCCTGCCTGACAGCAGCCATGTGGGAAAACATGA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCGTGAAGTTCTACTTCTaGGAAGCTCTGCATTCTGTT +
Preference number: 4 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACVKFYF*EALHSV
Trigger: AACAGAATGCAGAGCTTCTCAGAAGTAGAACTTCAC...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGTCTACCCTGTCAATGTaGTTCTTGAGCTCTGGCCGC +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQSTLSM*FLSSGR
Trigger: GCGGCCAGAGCTCAAGAATCACATTGACAGGGTAGA...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQGLCWR*NGWRCR
Trigger: CCTACATCTCCAGCCATTGCACCTCCAACAGAGACC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTGLCWR*NGWRCR
Trigger: CCTACATCTCCAGCCATTGCACCTCCAACAGAGACC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCCTTTGTCTGTGGCATaGATAAAATACTCATGTTTT +
Preference number: 4 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAPLSVA*IKYSCF
Trigger: AAAACATGAGTATTTTATGCATGCCACAGACAAAGG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATCGATCCTTTGCTTTaGGGTCATCTTGGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEIDPLL*GHLGEV
Trigger: GACCTCACCAAGATGACCCCAAAGCAAAGGATCGAT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTTTCTTTGCATTTCCTaGGCCAGCCATGAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTFLCIS*ASHEGR
Trigger: TCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCGGTGACTCGGGGCACTaGTCGGGGTGTCCGTGGTTT +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFGDSGH*SGCPWF
Trigger: AAACCACGGACACCCCGACCAGTGCCCCGAGTCACC...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACATCATGTTTTCCCACATaGCTGCTGTCAGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTSCFPT*LLSGRP
Trigger: TGGCCTGCCTGACAGCAGCCATGTGGGAAAACATGA...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAATTAATAAAGGTGGCCTaGTCCTCAAGGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQLIKVA*SSRVSL
Trigger: CAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAA...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCCTGTTGCTGTTAAACTaGACCCACGATTTCTCACCT +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAILLLLN*THDFSP
Trigger: AGGTGAGAAATCGTGGGTTCAGTTTAACAGCAACAG...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACTGTTGCTGTTAAACTaGACCCACGATTTCTCACCT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTELLLLN*THDFSP
Trigger: AGGTGAGAAATCGTGGGTTCAGTTTAACAGCAACAG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAATTAAATCCGTTGGAATaGTCACTCGAAATGAGCGCC +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQLNPLE*SLEMSA
Trigger: GGCGCTCATTTCGAGTGAGCATTCCAACGGATTTAA...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQNRSIL*FGVILV
Trigger: CACCAAGATGACCCCAAAGCAAAGGATCGATCTGTT...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAINRSIL*FGVILV
Trigger: CACCAAGATGACCCCAAAGCAAAGGATCGATCTGTT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCTTTGTCTGTGGCATaGATAAAATACTCATGTTTT +
Preference number: 4 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCPLSVA*IKYSCF
Trigger: AAAACATGAGTATTTTATGCATGCCACAGACAAAGG...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCATCGATCCTTTGCTTTaGGGTCATCTTGGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFIDPLL*GHLGEV
Trigger: GACCTCACCAAGATGACCCCAAAGCAAAGGATCGAT...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGTTTCTTTGCATTTCCTaGGCCAGCCATGAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQFLCIS*ASHEGR
Trigger: TCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAA...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
3UTR CAA 72 bp CACCCACCCACCCTCCATCAGGGAAGGGATACATTATaGCAAAAGGCATTCCTCCCTAAAAGGTACCCGAAA +
Preference number: 4 (lower is better)
Translates to: HPPTLHQGRDTL*QKAFLPKRYPK
Trigger: TTTCGGGTACCTTTTAGGGAGGAATGCCTTTTGCAATAATGTATCCCTTCCCTGATGGAGGGTGGGTGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCCCGTACCGTCTGGAATaGCAACCACGGTGGGAACAG +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFPYRLE*QPRWEQ
Trigger: CTGTTCCCACCGTGGTTGGCATTCCAGACGGTACGG...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCCAACCTGGTGATGGGTaGTTTGGTGGTGACTCGGGG +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFQPGDG*FGGDSG
Trigger: CCCCGAGTCACCACCAAAGCACCCATCACCAGGTTG...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCAGGCGTTGCTGGCTTTaGCGTGGACACTCGTGGCTT +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFRRCWL*RGHSWL
Trigger: AAGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCT...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGTTAATAAAGGTGGCCTaGTCCTCAAGGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQLIKVA*SSRVSL
Trigger: CAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAA...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCGTGAAGTTCTACTTCTaGGAAGCTCTGCATTCTGTT +
Preference number: 4 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTVKFYF*EALHSV
Trigger: AACAGAATGCAGAGCTTCTCAGAAGTAGAACTTCAC...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTCTCGCGTCCGAATGGTaGCCGTGGGCTTCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALLASEW*PWASLE
Trigger: TTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAG...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACTGTTGCTGTTAAACTaGACCCACGATTTCTCACCT +
Preference number: 4 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTLLLLN*THDFSP
Trigger: AGGTGAGAAATCGTGGGTTCAGTTTAACAGCAACAG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAAAAGCAATTTTCTTGTaGATGTCATTCACCACCGGT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEKAIFL*MSFTTG
Trigger: ACCGGTGGTGAATGACATTCACAAGAAAATTGCTTT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCGGCCTCCTTCCCTGCTaGAGACACCTTGATGATCTC +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFGLLPC*RHLDDL
Trigger: GAGATCATCAAGGTGTCTGCAGCAGGGAAGGAGGCC...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCGCCTCCGGAGTCGTTTaGGGAGAGTGGGCTTCTTAT +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFASGVV*GEWASY
Trigger: ATAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGC...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCCCTGGTTCAGAGGAGTaGTCTCGGGCATACTCTGGT +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFPGSEE*SRAYSG
Trigger: ACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGG...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCAAAGCAATTTTCTTGTaGATGTCATTCACCACCGGT +
Preference number: 4 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFKAIFL*MSFTTG
Trigger: ACCGGTGGTGAATGACATTCACAAGAAAATTGCTTT...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR TCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCAACATACGGAGGGGGTaGTCGGTATGGGGTCATGTT +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFNIRRG*SVWGHV
Trigger: AACATGACCCCATACCGATCACCCCCTCCGTATGTT...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFSHGLC*RCNGWR
Trigger: TCTCCAGCCATTGCACCTCCAACAGAGACCATGGCT...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGCTTTGTGGTAGTTGTTaGAGGAGTAATAACGGCTGT +
Preference number: 4 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQLCGSC*RSNNGC
Trigger: ACAGCCGTTATTACTCCTCCAACAACTACCACAAAG...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACCTTTGTCTGTGGCATaGATAAAATACTCATGTTTT +
Preference number: 4 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEPLSVA*IKYSCF
Trigger: AAAACATGAGTATTTTATGCATGCCACAGACAAAGG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCTTTCTTTGCATTTCCTaGGCCAGCCATGAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFFLCIS*ASHEGR
Trigger: TCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAA...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGACATCAAGAAAAGGCATGCTCAAAATGGTTTCTTCCAAAGGAGGAGAATCATCATGTTTTCCCACATaGCTGCTGTCAGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: QTSRKGMLKMVSSKGGESSCFPT*LLSGRP
Trigger: TGGCCTGCCTGACAGCAGCCATGTGGGAAAACATGA...TGATTCTCCTCCTTTGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR GCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTGGAGCCTTCTCTTCCTaGAAGATGAGCGGCATGCTG +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALGAFSS*KMSGML
Trigger: CAGCATGCCGCTCATCTTGCAGGAAGAGAAGGCTCC...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTCTGAATGGCCGTGGTTaGGGGTCCAATGGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALLNGRG*GSNGSN
Trigger: GTTACTGCCATTGGACCCCCAACCACGGCCATTCAG...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTAGTGTTGGGCGAATCTaGCCAGGAACCGTGGTACCA +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALSVGRI*PGTVVP
Trigger: TGGTACCACGGTTCCTGGCCAGATTCGCCCAACACT...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTTGCCCGTACAGACTGTaGCTCATTGTGGTCTTCAGG +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALCPYRL*LIVVFR
Trigger: CCTGAAGACCACAATGAGCCACAGTCTGTACGGGCA...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp CAGACATCAAGAAAAGGCATGCTCAAAATGGTTTCTTCCAAAGGAGGAGAATCATTAATAAAGGTGGCCTaGTCCTCAAGGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: QTSRKGMLKMVSSKGGESLIKVA*SSRVSL
Trigger: CAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAA...TGATTCTCCTCCTTTGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CCA 90 bp TTATTTTTGATGAGGTCACCAGAAATAATTTCATCGGATCAGATCCCTGCTCTTAGGAATTGTCAGTGTTaGGCGAATCTGGCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LFLMRSPEIISSDQIPALRNCQC*ANLARN
Trigger: GTTCCTGGCCAGATTCGCCCAACACTGACAATTCCT...AAGAGCAGGGATCTGATCCGATGAAATTATTTCTGGTGACCTCATCAAAAATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCGGGACGTGGCTTCCATaGGCTCCCAGGCGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRAGTWLP*APRRAA
Trigger: TGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCC...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCGGGACGTGGCTTCCATaGGCTCCCAGGCGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: EAPPASSPWQQRESEPSTGTWLP*APRRAA
Trigger: TGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCC...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp GGGACGGGAGCCCTTGCCCTCCATGGGAGCCGTGAAGGGTGGGGGTaGCTGATAGGGAGGTGCGTTAGGATCCTCATCCCGCAGGGGTGT +
Preference number: 5 (lower is better)
Translates to: GTGALALHGSREGWG*LIGRCVRILIPQGC
Trigger: ACACCCCTGCGGGATGAGGATCCTAACGCACCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCGCGGAGAGGCCCCCTTaGTCTGTGGCATGCATAAAA +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRAAERPP*SVACIK
Trigger: TTTTATGCATGCCACAGACAAAGGGGGCCTCTCCGC...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTATGGGGTCATGTTCTaGGGACGGGAGCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: EAPPASSPWQQRESEPSTYGVMF*GREPLP
Trigger: GGGCAAGGGCTCCCGTCCCAAGAACATGACCCCATA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCACAGGATAACCAAGTaGGGCAGACATAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRAHRITK*GRHSTL
Trigger: GAGGGTGCTATGTCTGCCCAACTTGGTTATCCTGTG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCAGAGTGGGCTTCTTATaGGCAATGTGCCAACCCACC +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRARVGFL*AMCQPT
Trigger: GGTGGGTTGGCACATTGCCAATAAGAAGCCCACTCT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTCCAGGGGCAGAGTGTaGTTGGTCCATTCCACCACG +
Preference number: 5 (lower is better)
Translates to: EAPPASSPWQQRESEPSTSRGRV*LVHSTT
Trigger: CGTGGTGGAATGGACCAACAACACTCTGCCCCTGGA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp GTTCTTGGGACGGGAGCCCTTGCCCTCCATGGGAGCCGTGAAGGGTaGGGGTGGCTGATAGGGAGGTGCGTTAGGATCCTCATCCCGCAG +
Preference number: 5 (lower is better)
Translates to: VLGTGALALHGSREG*GWLIGRCVRILIPQ
Trigger: CTGCGGGATGAGGATCCTAACGCACCTCCCTATCAGCCACCCCCACCCTTCACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCCAAGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCTTGGGACGGGAGCCCTaGCCCTCCATGGGAGCCGTG +
Preference number: 5 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCLGREP*PSMGAV
Trigger: CACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCCAA...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCCAACAGATCGATCCTTaGCTTTGGGGTCATCTTGGT +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRAQQIDP*LWGHLG
Trigger: ACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTG...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CCCGCAGGGGTGTGTACTCTCCCACAGTGTCCTGGTTCAGAGGAGTaGTCTCGGGCATACTCTGGTTGGGGTACTCAGGAGGTGGGAGGG +
Preference number: 5 (lower is better)
Translates to: PAGVCTLPQCPGSEE*SRAYSGWGTQEVGG
Trigger: CCCTCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGGACACTGTGGGAGAGTACACACCCCTGCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCCCTCCAGCTTCCAGCCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCTCTCTACCACTTTCTTaGCATTTCCTGGGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: EAPPASSPWQQRESEPSTSLPLS*HFLGQP
Trigger: TGGCTGGCCCAGGAAATGCAAAGAAAGTGGTAGAGA...GGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGGCTGGAAGCTGGAGGGGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACTGGTGATGGGTGCTTaGGTGGTGACTCGGGGCACT +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLLVMGA*VVTRGT
Trigger: AGTGCCCCGAGTCACCACCAAAGCACCCATCACCAG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPASGILW*GYSGGG
Trigger: CCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp CTGGCCTTGAACCGTGCAGGAGCCTTGTCCCCTTGTGGGCGCTTGTaGACATGGATCTCGAAGGCATCCACAGCGGAGAGGCCCCCTTTG +
Preference number: 5 (lower is better)
Translates to: LALNRAGALSPCGRL*TWISKASTAERPPL
Trigger: CAAAGGGGGCCTCTCCGCTGTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp TCCCCCACGGGGCACTCCACTGGTGGTAGTACGGATTCGAGTGGGTaGGGAAGCTGTCTCCAACCTGGTGATGGGTGCTTTGGTGGTGAC +
Preference number: 5 (lower is better)
Translates to: SPTGHSTGGSTDSSG*GSCLQPGDGCFGGD
Trigger: GTCACCACCAAAGCACCCATCACCAGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGTACTACCACCAGTGGAGTGCCCCGTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CCCTGCAAGCCTGGCCTTGAACCGTGCAGGAGCCTTGTCCCCTTGTaGGCGCTTGTGAACATGGATCTCGAAGGCATCCACAGCGGAGAG +
Preference number: 5 (lower is better)
Translates to: PCKPGLEPCRSLVPL*ALVNMDLEGIHSGE
Trigger: CTCTCCGCTGTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCCCTGGCAACAGCGGGAGAGCGAACCCAGCACCAGGGCCCTGGCACCCGAGCCAGGCAATTAAATCCGTaGGAATGCTCACTCGAAATG +
Preference number: 5 (lower is better)
Translates to: PLATAGERTQHQGPGTRARQLNP*ECSLEM
Trigger: CATTTCGAGTGAGCATTCCAACGGATTTAATTGCCT...GGCTCGGGTGCCAGGGCCCTGGTGCTGGGTTCGCTCTCCCGCTGTTGCCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCCTGGTGATGGGTGCTTaGGTGGTGACTCGGGGCACT +
Preference number: 5 (lower is better)
Translates to: KCRELGPPSTACEFIHGSLVMGA*VVTRGT
Trigger: AGTGCCCCGAGTCACCACCAAAGCACCCATCACCAG...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGCCTGCAAGCCTGGCCTaGAACCGTGCAGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGPASLA*NRAGAL
Trigger: CAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGG...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATCCAGGGGCAGAGTGTaGTTGGTCCATTCCACCACG +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSRGRV*LVHSTT
Trigger: CGTGGTGGAATGGACCAACAACACTCTGCCCCTGGA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTATGGGGTCATGTTCTaGGGACGGGAGCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: KCRELGPPSTACEFIHGSYGVMF*GREPLP
Trigger: GGGCAAGGGCTCCCGTCCCAAGAACATGACCCCATA...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp GCTTCTGACACCCGAGTAGGCTGGATAGGGCCCAGAGTTGGGGTCTaGATAATGGCACCTCGCGTCCGAATGGTGACCGTGGGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: ASDTRVGWIGPRVGV*IMAPRVRMVTVGFP
Trigger: AGGGAAGCCCACGGTCACCATTCGGACGCGAGGTGCCATTATTCAGACCCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTCAGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 90 bp ATTCACCACCGGTGCTGGATCCCCTGCAAGCCTGGCCTTGAACCGTaGAGGAGCCTTGTCCCCTTGTGGGCGCTTGTGAACATGGATCTC +
Preference number: 5 (lower is better)
Translates to: IHHRCWIPCKPGLEP*RSLVPLWALVNMDL
Trigger: GAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp AGGCGTAGGCACTATCCGCGATGGTGGCTCCTGAATGGCCGTGGTTaGGGGTCCAATGGCAGTAACAGGTGTAGGTGTGGCGTGGATCTG +
Preference number: 5 (lower is better)
Translates to: RRRHYPRWWLLNGRG*GSNGSNRCRCGVDL
Trigger: CAGATCCACGCCACACCTACACCTGTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTGCCTCCGGAGTCGTTaGGGGAGAGTGGGCTTCTTA +
Preference number: 5 (lower is better)
Translates to: KCRELGPPSTACEFIHGSCLRSR*GRVGFL
Trigger: TAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGCA...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGAGCCATGGTCTCTGTaGGAGGTGCAATGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPEPWSL*EVQWLE
Trigger: CTCCAGCCATTGCACCTCCAACAGAGACCATGGCTC...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAGGTGTCCGTGGTTTTTaGGTTGGCCTCCGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLGVRGF*VGLRVV
Trigger: CACAACTCGGAGGCCAACCAAAAAACCACGGACACC...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCCAGGGGCAGAGTGTaGTTGGTCCATTCCACCACG +
Preference number: 5 (lower is better)
Translates to: KCRELGPPSTACEFIHGSSRGRV*LVHSTT
Trigger: CGTGGTGGAATGGACCAACAACACTCTGCCCCTGGA...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTATCCTCAAGGGTCAGCTaGCCCTTCCTCTTCTTGCGA +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLSSRVS*PFLFLR
Trigger: TCGCAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGA...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 90 bp CCAACCACGGTGGGAACAGCCTCCTGGAAGTCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGGTTCTTCCAGTCCCTCACAGCCTCT +
Preference number: 5 (lower is better)
Translates to: PTTVGTASWKSERTE*MDASSWFFQSLTAS
Trigger: AGAGGCTGTGAGGGACTGGAAGAACCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 90 bp TGCTCACTCGAAATGAGCGCCCGACAACAGCCGTACCGTCTGGAATaGCAACCACGGTGGGAACAGCCTCCTGGAAGTCGGAGAGAACTG +
Preference number: 5 (lower is better)
Translates to: CSLEMSARQQPYRLE*QPRWEQPPGSRREL
Trigger: CAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTTGTCGGGCGCTCATTTCGAGTGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp ACAGCCGTACCGTCTGGAATGCCAACCACGGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAGTGCATGGACGCCTCAAGCTGGTTC +
Preference number: 5 (lower is better)
Translates to: TAVPSGMPTTVGTAS*KSERTECMDASSWF
Trigger: GAACCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTCCAGACGGTACGGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp GCCGTGGTTGGGGGTCCAATGGCAGTAACAGGTGTAGGTGTGGCGTaGATCTGCCTCCGGAGTCGTTTGGGGAGAGTGGGCTTCTTATTG +
Preference number: 5 (lower is better)
Translates to: AVVGGPMAVTGVGVA*ICLRSRLGRVGFLL
Trigger: CAATAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGCAGATCCACGCCACACCTACACCTGTTACTGCCATTGGACCCCCAACCACGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp AGGTGCAATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGATGGTaGCTCCTGAATGGCCGTGGTTGGGGGTCCAATGGCAGTAACAGG +
Preference number: 5 (lower is better)
Translates to: RCNGWRCRRRHYPRW*LLNGRGWGSNGSNR
Trigger: CCTGTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp TGGAGGTGCAATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGATaGTGGCTCCTGAATGGCCGTGGTTGGGGGTCCAATGGCAGTAAC +
Preference number: 5 (lower is better)
Translates to: WRCNGWRCRRRHYPR*WLLNGRGWGSNGSN
Trigger: GTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CTGAATAATGGCACCTCGCGTCCGAATGGTGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGGAGGAGCCATGGTCTCTGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: LNNGTSRPNGDRGLP*NRIPDRRSHGLCWR
Trigger: CCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAGGTGCCATTATTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAGGGACGTGGCTTCCATaGGCTCCCAGGCGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQGTWLP*APRRAA
Trigger: TGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCC...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAGGGACGTGGCTTCCATaGGCTCCCAGGCGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTEGTWLP*APRRAA
Trigger: TGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCC...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTGCTTTGGGGTCATCTaGGTGAGGTCAGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPACFGVI*VRSASR
Trigger: TCTGGATGCTGACCTCACCAAGATGACCCCAAAGCA...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCACAGGATAACCAAGTaGGGCAGACATAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAHRITK*GRHSTL
Trigger: GAGGGTGCTATGTCTGCCCAACTTGGTTATCCTGTG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACACAGGATAACCAAGTaGGGCAGACATAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLHRITK*GRHSTL
Trigger: GAGGGTGCTATGTCTGCCCAACTTGGTTATCCTGTG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCCAGGAATTGTCAGTGTaGGGCGAATCTGGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: PVSTDNTKLSPGPCPTPAQELSV*GESGQE
Trigger: TTCCTGGCCAGATTCGCCCAACACTGACAATTCCTG...GGCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTACAGGAATTGTCAGTGTaGGGCGAATCTGGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLQELSV*GESGQE
Trigger: TTCCTGGCCAGATTCGCCCAACACTGACAATTCCTG...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACAAGGCGTTGCTGGCTTaGGCGTGGACACTCGTGGCT +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDKALLA*AWTLVA
Trigger: AGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCTT...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CTAGGTCAGGTGTTGGGGACCAGTGGGCAATGGCCTGTGGGCCACCGGTCTCTAAATCAGTTGAAGGCGTaGCTGGCTTTGGCGTGGACA +
Preference number: 5 (lower is better)
Translates to: LGQVLGTSGQWPVGHRSLNQLKA*LALAWT
Trigger: TGTCCACGCCAAAGCCAGCAACGCCTTCAACTGATT...TAGAGACCGGTGGCCCACAGGCCATTGCCCACTGGTCCCCAACACCTGACCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTCCAGGGGCAGAGTGTaGTTGGTCCATTCCACCACG +
Preference number: 5 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGSRGRV*LVHSTT
Trigger: CGTGGTGGAATGGACCAACAACACTCTGCCCCTGGA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTCCTCAAGGGTCAGCTaGCCCTTCCTCTTCTTGCGA +
Preference number: 5 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLSSRVS*PFLFLR
Trigger: TCGCAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGA...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACSGILW*GYSGGG
Trigger: CCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGA...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCTTGGGACGGGAGCCCTaGCCCTCCATGGGAGCCGTG +
Preference number: 5 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFLGREP*PSMGAV
Trigger: CACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCCAA...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCTATGGGGTCATGTTCTaGGGACGGGAGCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACYGVMF*GREPLP
Trigger: GGGCAAGGGCTCCCGTCCCAAGAACATGACCCCATA...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp ATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGTCCAATGGCAGTAACAGGTGTAGGT +
Preference number: 5 (lower is better)
Translates to: MAGDVGVGTIRDGGS*MAVVGGPMAVTGVG
Trigger: ACCTACACCTGTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp TGTCAGTGTTGGGCGAATCTGGCCAGGAACCGTGGTACCAGCTTCTaGCACCCGAGTAGGCTGGATAGGGCCCAGAGTTGGGGTCTGAAT +
Preference number: 5 (lower is better)
Translates to: CQCWANLARNRGTSF*HPSRLDRAQSWGLN
Trigger: ATTCAGACCCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGATTCGCCCAACACTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 90 bp TGGAACAGGATCCCTGACAGGAGGAGCCATGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGATGGTGG +
Preference number: 5 (lower is better)
Translates to: WNRIPDRRSHGLCWR*NGWRCRRRHYPRWW
Trigger: CCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGATCCTGTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CTTCCCTGGAACAGGATCCCTGACAGGAGGAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGA +
Preference number: 5 (lower is better)
Translates to: LPWNRIPDRRSHGLC*RCNGWRCRRRHYPR
Trigger: TCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGATCCTGTTCCAGGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCCCTGCTGCAGACACCTaGATGATCTCCCCACTGGAG +
Preference number: 5 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACPAADT*MISPLE
Trigger: CTCCAGTGGGGAGATCATCAAGGTGTCTGCAGCAGG...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTGCTTTGGGGTCATCTaGGTGAGGTCAGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLCFGVI*VRSASR
Trigger: TCTGGATGCTGACCTCACCAAGATGACCCCAAAGCA...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCACAGGATAACCAAGTaGGGCAGACATAGCACCCTC +
Preference number: 5 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPHRITK*GRHSTL
Trigger: GAGGGTGCTATGTCTGCCCAACTTGGTTATCCTGTG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACTGCCTCCGGAGTCGTTaGGGGAGAGTGGGCTTCTTA +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDCLRSR*GRVGFL
Trigger: TAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGCA...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCTGCCTCCGGAGTCGTTaGGGGAGAGTGGGCTTCTTA +
Preference number: 5 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACCLRSR*GRVGFL
Trigger: TAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGCA...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCAGGAATTGTCAGTGTaGGGCGAATCTGGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPQELSV*GESGQE
Trigger: TTCCTGGCCAGATTCGCCCAACACTGACAATTCCTG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp AAATGCAGAGAGCTGGGGCCGCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCAATCAGTTGAAGGCGTaGCTGGCTTTGGCGTGGACA +
Preference number: 5 (lower is better)
Translates to: KCRELGPPSTACEFIHGSNQLKA*LALAWT
Trigger: TGTCCACGCCAAAGCCAGCAACGCCTTCAACTGATT...GGAACCGTGAATGAACTCGCAGGCAGTGCTGGGCGGCCCCAGCTCTCTGCATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCAGGGTCAGCTTGAGCTaGTCGGTAGTGGTATCCTCA +
Preference number: 5 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCRVSLS*SVVVSS
Trigger: TGAGGATACCACTACCGACAAGCTCAAGCTGACCCT...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCAGCTTCAGGGTCAGCTaGAGCTTGTCGGTAGTGGTA +
Preference number: 5 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLSFRVS*SLSVVV
Trigger: TACCACTACCGACAAGCTCAAGCTGACCCTGAAGCT...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGGCGGAGAGGCCCCCTTaGTCTGTGGCATGCATAAAA +
Preference number: 5 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGAERPP*SVACIK
Trigger: TTTTATGCATGCCACAGACAAAGGGGGCCTCTCCGC...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAACCTGCAAGCCTGGCCTaGAACCGTGCAGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQPASLA*NRAGAL
Trigger: CAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGG...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCAGGGGCAGAGTGTTGTaGGTCCATTCCACCACGATA +
Preference number: 5 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCRGRVL*VHSTTI
Trigger: TATCGTGGTGGAATGGACCAACAACACTCTGCCCCT...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp ATCCCTGACAGGAGGAGCCATGGTCTCTGTTGGAGGTGCAATGGCTaGAGATGTAGGCGTAGGCACTATCCGCGATGGTGGCTCCTGAAT +
Preference number: 5 (lower is better)
Translates to: IPDRRSHGLCWRCNG*RCRRRHYPRWWLLN
Trigger: ATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp TTAGGATCCTCATCCCGCAGGGGTGTGTACTCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCGGGCATACTCTGGTTGGGGTACTCA +
Preference number: 5 (lower is better)
Translates to: LGSSSRRGVYSPTVS*FRGVVSGILWLGYS
Trigger: TGAGTACCCCAACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGGACACTGTGGGAGAGTACACACCCCTGCGGGATGAGGATCCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGTGCTTTGGGGTCATCTaGGTGAGGTCAGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGCFGVI*VRSASR
Trigger: TCTGGATGCTGACCTCACCAAGATGACCCCAAAGCA...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTTCTCTACCACTTTCTTaGCATTTCCTGGGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPSLPLS*HFLGQP
Trigger: TGGCTGGCCCAGGAAATGCAAAGAAAGTGGTAGAGA...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACGCGGAGAGGCCCCCTTaGTCTGTGGCATGCATAAAA +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDAERPP*SVACIK
Trigger: TTTTATGCATGCCACAGACAAAGGGGGCCTCTCCGC...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCCCTGCAAGCCTGGCCTaGAACCGTGCAGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTPASLA*NRAGAL
Trigger: CAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGG...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTGTCCAGGCCCTGTTGTCAGTGTGTGCTAGGTCAGGTGTTGGGGACCAGTGGGAGGGGCAGAGTGTTGTaGGTCCATTCCACCACGATA +
Preference number: 5 (lower is better)
Translates to: LSRPCCQCVLGQVLGTSGRGRVL*VHSTTI
Trigger: TATCGTGGTGGAATGGACCAACAACACTCTGCCCCT...CCCACTGGTCCCCAACACCTGACCTAGCACACACTGACAACAGGGCCTGGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACTCCTCAAGGGTCAGCTaGCCCTTCCTCTTCTTGCGA +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDSSRVS*PFLFLR
Trigger: TCGCAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGA...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp CTGGGGGACGTGGCTTCCATTGGCTCCCAGGCGTGCAGCACTCACTaGGATGTAATGCACACCTTTATCAGTGTCAAGAGGAAGGCCTTC +
Preference number: 5 (lower is better)
Translates to: LGDVASIGSQACSTH*DVMHTFISVKRKAF
Trigger: GAAGGCCTTCCTCTTGACACTGATAAAGGTGTGCATTACATCTCAGTGAGTGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp AGCAATGATTCCAGCAATGAGCAGGATGGCCGCGACCACCACGGCTaGGATAACGGTGTGCAGGTAAACATCGTCCTCACTGCTCTTCTC +
Preference number: 5 (lower is better)
Translates to: SNDSSNEQDGRDHHG*DNGVQVNIVLTALL
Trigger: GAGAAGAGCAGTGAGGACGATGTTTACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCGGCCATCCTGCTCATTGCTGGAATCATTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCCTACATAGCCAGGAATaGTCAGTGTTGGGCGAATCT +
Preference number: 5 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCLHSQE*SVLGES
Trigger: AGATTCGCCCAACACTGACAATTCCTGGCTATGTAG...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TGGCCTGTGGGCCACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTCTACATAGCCAGGAATaGTCAGTGTTGGGCGAATCT +
Preference number: 5 (lower is better)
Translates to: WPVGHRSLQTTPSCLQAPLHSQE*SVLGES
Trigger: AGATTCGCCCAACACTGACAATTCCTGGCTATGTAG...AGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGTGGCCCACAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAAGGCGTTGCTGGCTTaGGCGTGGACACTCGTGGCT +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTKALLA*AWTLVA
Trigger: AGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCTT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGTCCCTTTCCCACAGAAATGAAGACCCCCTTGGTGGTAGGCCACTAGCGTGCAATCAGTTGAAGGCGTaGCTGGCTTTGGCGTGGACA +
Preference number: 5 (lower is better)
Translates to: ESLSHRNEDPLGGRPLACNQLKA*LALAWT
Trigger: TGTCCACGCCAAAGCCAGCAACGCCTTCAACTGATT...GCACGCTAGTGGCCTACCACCAAGGGGGTCTTCATTTCTGTGGGAAAGGGACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCCTGGTGATGGGTGCTTaGGTGGTGACTCGGGGCACT +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTLVMGA*VVTRGT
Trigger: AGTGCCCCGAGTCACCACCAAAGCACCCATCACCAG...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACAGCTTCAGGGTCAGCTaGAGCTTGTCGGTAGTGGTA +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDSFRVS*SLSVVV
Trigger: TACCACTACCGACAAGCTCAAGCTGACCCTGAAGCT...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACCTGCAAGCCTGGCCTaGAACCGTGCAGGAGCCTTG +
Preference number: 5 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTPASLA*NRAGAL
Trigger: CAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTSGILW*GYSGGG
Trigger: CCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGA...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CATCTTGGTGAGGTCAGCATCCAGAATCACTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGCAGATGGCACTACCTCACCAGGGTC +
Preference number: 5 (lower is better)
Translates to: HLGEVSIQNHCKDSH*LISSTGRWHYLTRV
Trigger: GACCCTGGTGAGGTAGTGCCATCTGCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACAGTGATTCTGGATGCTGACCTCACCAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCGAGCCATGGTCTCTGTaGGAGGTGCAATGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTEPWSL*EVQWLE
Trigger: CTCCAGCCATTGCACCTCCAACAGAGACCATGGCTC...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAAGGCGTTGCTGGCTTaGGCGTGGACACTCGTGGCT +
Preference number: 5 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQKALLA*AWTLVA
Trigger: AGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCTT...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACACTGGTGATGGGTGCTTaGGTGGTGACTCGGGGCACT +
Preference number: 5 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTLVMGA*VVTRGT
Trigger: AGTGCCCCGAGTCACCACCAAAGCACCCATCACCAG...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACCGGTCTCTACAGACAACACCAAGTTGTCTCCAGGCCCCTGCCCTACCCCTGCAGGCAATTAAATCCGTaGGAATGCTCACTCGAAATG +
Preference number: 5 (lower is better)
Translates to: TGLYRQHQVVSRPLPYPCRQLNP*ECSLEM
Trigger: CATTTCGAGTGAGCATTCCAACGGATTTAATTGCCT...GCAGGGGTAGGGCAGGGGCCTGGAGACAACTTGGTGTTGTCTGTAGAGACCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCCCAGCACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCAGGCAATTAAATCCGTaGGAATGCTCACTCGAAATG +
Preference number: 5 (lower is better)
Translates to: AQHCLRVHSRFLAPSFYLRQLNP*ECSLEM
Trigger: CATTTCGAGTGAGCATTCCAACGGATTTAATTGCCT...GAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGTGCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATGCTTTGGGGTCATCTaGGTGAGGTCAGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTECFGVI*VRSASR
Trigger: TCTGGATGCTGACCTCACCAAGATGACCCCAAAGCA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGGACCAGGAGGCCCTCAGTCAGGCTCTGGGATATCAGAGCAACCAAGTTGACCAACAGATCGATCCTTaGCTTTGGGGTCATCTTGGT +
Preference number: 5 (lower is better)
Translates to: QDQEALSQALGYQSNQVDQQIDP*LWGHLG
Trigger: ACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTG...GTCAACTTGGTTGCTCTGATATCCCAGAGCCTGACTGAGGGCCTCCTGGTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAAGAGTGGGCTTCTTATaGGCAATGTGCCAACCCACC +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQRVGFL*AMCQPT
Trigger: GGTGGGTTGGCACATTGCCAATAAGAAGCCCACTCT...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCAGAGTGGGCTTCTTATaGGCAATGTGCCAACCCACC +
Preference number: 5 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRVGFL*AMCQPT
Trigger: GGTGGGTTGGCACATTGCCAATAAGAAGCCCACTCT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGGAGCCATGGTCTCTGTaGGAGGTGCAATGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQEPWSL*EVQWLE
Trigger: CTCCAGCCATTGCACCTCCAACAGAGACCATGGCTC...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAACAGGAATTGTCAGTGTaGGGCGAATCTGGCCAGGAA +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQQELSV*GESGQE
Trigger: TTCCTGGCCAGATTCGCCCAACACTGACAATTCCTG...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAAATCAGTTGAAGGCGTaGCTGGCTTTGGCGTGGACA +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQNQLKA*LALAWT
Trigger: TGTCCACGCCAAAGCCAGCAACGCCTTCAACTGATT...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCGGTGTCCGTGGTTTTTaGGTTGGCCTCCGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFGVRGF*VGLRVV
Trigger: CACAACTCGGAGGCCAACCAAAAAACCACGGACACC...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAAGGGTCAGCTTGAGCTaGTCGGTAGTGGTATCCTCA +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTERVSLS*SVVVSS
Trigger: TGAGGATACCACTACCGACAAGCTCAAGCTGACCCT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAAGCTTCAGGGTCAGCTaGAGCTTGTCGGTAGTGGTA +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQSFRVS*SLSVVV
Trigger: TACCACTACCGACAAGCTCAAGCTGACCCTGAAGCT...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCGCGGAGAGGCCCCCTTaGTCTGTGGCATGCATAAAA +
Preference number: 5 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFAERPP*SVACIK
Trigger: TTTTATGCATGCCACAGACAAAGGGGGCCTCTCCGC...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCCATCAGGGGCAGAGTGTTGTaGGTCCATTCCACCACGATA +
Preference number: 5 (lower is better)
Translates to: TVPRSLLLPLLKQCFRAIRGRVL*VHSTTI
Trigger: TATCGTGGTGGAATGGACCAACAACACTCTGCCCCT...GATGGCTCTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAAGGGGCAGAGTGTTGTaGGTCCATTCCACCACGATA +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTERGRVL*VHSTTI
Trigger: TATCGTGGTGGAATGGACCAACAACACTCTGCCCCT...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCTTGGGACGGGAGCCCTaGCCCTCCATGGGAGCCGTG +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFLGREP*PSMGAV
Trigger: CACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCCAA...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp CTTTACCAAAGCAATTTTCTTGTGAATGTCATTCACCACCGGTGCTaGATCCCCTGCAAGCCTGGCCTTGAACCGTGCAGGAGCCTTGTC +
Preference number: 5 (lower is better)
Translates to: LYQSNFLVNVIHHRC*IPCKPGLEPCRSLV
Trigger: GACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAATGACATTCACAAGAAAATTGCTTTGGTAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAATCTCTACCACTTTCTTaGCATTTCCTGGGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTESLPLS*HFLGQP
Trigger: TGGCTGGCCCAGGAAATGCAAAGAAAGTGGTAGAGA...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAAATGAAGACCAGAGTGGGCTTCTTATaGGCAATGTGCCAACCCACC +
Preference number: 5 (lower is better)
Translates to: EAIATNAFWSPFPTEMKTRVGFL*AMCQPT
Trigger: GGTGGGTTGGCACATTGCCAATAAGAAGCCCACTCT...GGTCTTCATTTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GGACTGTTGGGACAAAGTGGCCAAGGTCAAGTGAGGAAAGAGCATCACATGACAGGTGTCCGTGGTTTTTaGGTTGGCCTCCGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: GLLGQSGQGQVRKEHHMTGVRGF*VGLRVV
Trigger: CACAACTCGGAGGCCAACCAAAAAACCACGGACACC...TGTCATGTGATGCTCTTTCCTCACTTGACCTTGGCCACTTTGTCCCAACAGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp GCAATGCCCAATGGTGGGGTTGCTAAGAGCAACAAGAGTTATCTGGAGGGCTTCAGGGTCAGCTTGAGCTaGTCGGTAGTGGTATCCTCA +
Preference number: 5 (lower is better)
Translates to: AMPNGGVAKSNKSYLEGFRVSLS*SVVVSS
Trigger: TGAGGATACCACTACCGACAAGCTCAAGCTGACCCT...GAAGCCCTCCAGATAACTCTTGTTGCTCTTAGCAACCCCACCATTGGGCATTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS GCA 90 bp CTTCTTTACCAAAGCAATTTTCTTGTGAATGTCATTCACCACCGGTaGTGGATCCCCTGCAAGCCTGGCCTTGAACCGTGCAGGAGCCTT +
Preference number: 5 (lower is better)
Translates to: LLYQSNFLVNVIHHR*WIPCKPGLEPCRSL
Trigger: AAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAATGACATTCACAAGAAAATTGCTTTGGTAAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 90 bp TGCTGGCTTTGGCGTGGACACTCGTGGCTTCTTTGTGGTAGTTGTTaGAGGAGTAATAACGGCTGTGGGCTCTACATAGCCAGGAATTGT +
Preference number: 5 (lower is better)
Translates to: CWLWRGHSWLLCGSC*RSNNGCGLYIARNC
Trigger: ACAATTCCTGGCTATGTAGAGCCCACAGCCGTTATTACTCCTCCAACAACTACCACAAAGAAGCCACGAGTGTCCACGCCAAAGCCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ACTGCCTGCGAGTTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAACTACATAGCCAGGAATaGTCAGTGTTGGGCGAATCT +
Preference number: 5 (lower is better)
Translates to: TACEFIHGSSLPPSTSTQLHSQE*SVLGES
Trigger: AGATTCGCCCAACACTGACAATTCCTGGCTATGTAG...TTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAACTCGCAGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CCTAGGTTGGAGGCCATAGCCACCAATGCCTTTTGGAGTCCCTTTCCCACAGAACTACATAGCCAGGAATaGTCAGTGTTGGGCGAATCT +
Preference number: 5 (lower is better)
Translates to: PRLEAIATNAFWSPFPTELHSQE*SVLGES
Trigger: AGATTCGCCCAACACTGACAATTCCTGGCTATGTAG...TTCTGTGGGAAAGGGACTCCAAAAGGCATTGGTGGCTATGGCCTCCAACCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGCTTCAGGGTCAGCTaGAGCTTGTCGGTAGTGGTA +
Preference number: 5 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQSFRVS*SLSVVV
Trigger: TACCACTACCGACAAGCTCAAGCTGACCCTGAAGCT...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGG +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFSGILW*GYSGGG
Trigger: CCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGA...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCTATGGGGTCATGTTCTaGGGACGGGAGCCCTTGCCC +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFYGVMF*GREPLP
Trigger: GGGCAAGGGCTCCCGTCCCAAGAACATGACCCCATA...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 90 bp GAGCCCCATTCTCTACCACTTTCTTTGCATTTCCTGGGCCAGCCATaGAGGCCGACATGTCAAATAGTCTATTATTCACTACAGGCACCA +
Preference number: 5 (lower is better)
Translates to: EPHSLPLSLHFLGQP*RPTCQIVYYSLQAP
Trigger: TGGTGCCTGTAGTGAATAATAGACTATTTGACATGTCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAAGTGGTAGAGAATGGGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCGGTGTCCGTGGTTTTTaGGTTGGCCTCCGAGTTGTG +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFGVRGF*VGLRVV
Trigger: CACAACTCGGAGGCCAACCAAAAAACCACGGACACC...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp TTCATTCACGGTTCCTCGCTCCCTCCTTCTACCTCTACTCAAACAGTGCTTCAGAGGCAATTAAATCCGTaGGAATGCTCACTCGAAATG +
Preference number: 5 (lower is better)
Translates to: FIHGSSLPPSTSTQTVLQRQLNP*ECSLEM
Trigger: CATTTCGAGTGAGCATTCCAACGGATTTAATTGCCT...CTGAAGCACTGTTTGAGTAGAGGTAGAAGGAGGGAGCGAGGAACCGTGAATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCAGGGTCAGCTTGAGCTaGTCGGTAGTGGTATCCTCA +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFRVSLS*SVVVSS
Trigger: TGAGGATACCACTACCGACAAGCTCAAGCTGACCCT...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp CAGACATCAAGAAAAGGCATGCTCAAAATGGTTTCTTCCAAAGGAGGAGAATCATCCTCAAGGGTCAGCTaGCCCTTCCTCTTCTTGCGA +
Preference number: 5 (lower is better)
Translates to: QTSRKGMLKMVSSKGGESSSRVS*PFLFLR
Trigger: TCGCAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGA...TGATTCTCCTCCTTTGGAAGAAACCATTTTGAGCATGCCTTTTCTTGATGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191899.6
CDS TCA 90 bp CTTGAGCTTGTCGGTAGTGGTATCCTCATTGTCATAGAAGGTGTCTaGTGGAATCTTTACCTCAAAATAGGTTCCCACCCAGGCATCTAC +
Preference number: 5 (lower is better)
Translates to: LELVGSGILIVIEGV*WNLYLKIGSHPGIY
Trigger: GTAGATGCCTGGGTGGGAACCTATTTTGAGGTAAAGATTCCATCAGACACCTTCTATGACAATGAGGATACCACTACCGACAAGCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 90 bp TCTACTTCTGAGAAGCTCTGCATTCTGTTCAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTGAGGTCAGCATCCAGAATCACTGTA +
Preference number: 5 (lower is better)
Translates to: STSEKLCILFNRSIL*FGVILVRSASRITV
Trigger: TACAGTGATTCTGGATGCTGACCTCACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTGAACAGAATGCAGAGCTTCTCAGAAGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS-3UTR CAA 90 bp ATTGCATCTTCACCAAAATGTCCCCCACTGAGTGTTTCAAAGACCGTGATATTCCAACAGATCGATCCTTaGCTTTGGGGTCATCTTGGT +
Preference number: 5 (lower is better)
Translates to: IASSPKCPPLSVSKTVIFQQIDP*LWGHLG
Trigger: ACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTG...GAATATCACGGTCTTTGAAACACTCAGTGGGGGACATTTTGGTGAAGATGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp TCACCACCGGTGCTGGATCCCCTGCAAGCCTGGCCTTaGACCGTGCAGGAGCCTTGTCCCCTTGTGGGCGCT +
Preference number: 6 (lower is better)
Translates to: SPPVLDPLQAWP*TVQEPCPLVGA
Trigger: AGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 72 bp TTCACCACCGGTGCTGGATCCCCTGCAAGCCTGGCCTaGAACCGTGCAGGAGCCTTGTCCCCTTGTGGGCGC +
Preference number: 6 (lower is better)
Translates to: FTTGAGSPASLA*NRAGALSPCGR
Trigger: GCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GGCACCTCGCGTCCGAATGGTGACCGTGGGCTTCCCTaGAACAGGATCCCTGACAGGAGGAGCCATGGTCTC +
Preference number: 6 (lower is better)
Translates to: GTSRPNGDRGLP*NRIPDRRSHGL
Trigger: GAGACCATGGCTCCTCCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAGGTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GGGGGTCCAATGGCAGTAACAGGTGTAGGTGTGGCGTaGATCTGCCTCCGGAGTCGTTTGGGGAGAGTGGGC +
Preference number: 6 (lower is better)
Translates to: GGPMAVTGVGVA*ICLRSRLGRVG
Trigger: GCCCACTCTCCCCAAACGACTCCGGAGGCAGATCCACGCCACACCTACACCTGTTACTGCCATTGGACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GGCTGGAGATGTAGGCGTAGGCACTATCCGCGATGGTaGCTCCTGAATGGCCGTGGTTGGGGGTCCAATGGC +
Preference number: 6 (lower is better)
Translates to: GWRCRRRHYPRW*LLNGRGWGSNG
Trigger: GCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp TGGGCGAATCTGGCCAGGAACCGTGGTACCAGCTTCTaGCACCCGAGTAGGCTGGATAGGGCCCAGAGTTGG +
Preference number: 6 (lower is better)
Translates to: WANLARNRGTSF*HPSRLDRAQSW
Trigger: CCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACGGTTCCTGGCCAGATTCGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp GAAATGAGCGCCCGACAACAGCCGTACCGTCTGGAATaGCAACCACGGTGGGAACAGCCTCCTGGAAGTCGG +
Preference number: 6 (lower is better)
Translates to: EMSARQQPYRLE*QPRWEQPPGSR
Trigger: CCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTCCAGACGGTACGGCTGTTGTCGGGCGCTCATTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 90 bp ATCCCCTGCAAGCCTGGCCTTGAACCGTGCAGGAGCCTTGTCCCCTaGTGGGCGCTTGTGAACATGGATCTCGAAGGCATCCACAGCGGA +
Preference number: 6 (lower is better)
Translates to: IPCKPGLEPCRSLVP*WALVNMDLEGIHSG
Trigger: TCCGCTGTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTTGCAGGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 90 bp CCCACAGTGTCCTGGTTCAGAGGAGTGGTCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGGAGGGGAGCCTTCTCTTCCTGCAAG +
Preference number: 6 (lower is better)
Translates to: PTVSWFRGVVSGILW*GYSGGGRGAFSSCK
Trigger: CTTGCAGGAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGGACACTGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp AACCGTGCAGGAGCCTTGTCCCCTTGTGGGCGCTTGTaGACATGGATCTCGAAGGCATCCACAGCGGAGAGG +
Preference number: 6 (lower is better)
Translates to: NRAGALSPCGRL*TWISKASTAER
Trigger: CCTCTCCGCTGTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp CCAGGAGAGGGTGGTGCCACAGGGATAAACTGGAGGTaGCGACAACTGCCAGAGCCCGTCACAGCAATACTC +
Preference number: 6 (lower is better)
Translates to: PGEGGATGINWR*RQLPEPVTAIL
Trigger: GAGTATTGCTGTGACGGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCCTGTGGCACCACCCTCTCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp CCGTCTGGAATGCCAACCACGGTGGGAACAGCCTCCTaGAAGTCGGAGAGAACTGAGTGCATGGACGCCTCA +
Preference number: 6 (lower is better)
Translates to: PSGMPTTVGTAS*KSERTECMDAS
Trigger: TGAGGCGTCCATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTCCAGACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp CACTATCCGCGATGGTGGCTCCTGAATGGCCGTGGTTaGGGGTCCAATGGCAGTAACAGGTGTAGGTGTGGC +
Preference number: 6 (lower is better)
Translates to: HYPRWWLLNGRG*GSNGSNRCRCG
Trigger: GCCACACCTACACCTGTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp CCTGGCCTTGAACCGTGCAGGAGCCTTGTCCCCTTGTaGGCGCTTGTGAACATGGATCTCGAAGGCATCCAC +
Preference number: 6 (lower is better)
Translates to: PGLEPCRSLVPL*ALVNMDLEGIH
Trigger: GTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 72 bp TCCTGGTTCAGAGGAGTGGTCTCGGGCATACTCTGGTaGGGGTACTCAGGAGGTGGGAGGGGAGCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: SWFRGVVSGILW*GYSGGGRGAFS
Trigger: AGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp GATGTAGGCGTAGGCACTATCCGCGATGGTGGCTCCTaGATGGCCGTGGTTGGGGGTCCAATGGCAGTAACA +
Preference number: 6 (lower is better)
Translates to: DVGVGTIRDGGS*MAVVGGPMAVT
Trigger: TGTTACTGCCATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp GTGGGAACAGCCTCCTGGAAGTCGGAGAGAACTGAGTaGATGGACGCCTCAAGCTGGTTCTTCCAGTCCCTC +
Preference number: 6 (lower is better)
Translates to: VGTASWKSERTE*MDASSWFFQSL
Trigger: GAGGGACTGGAAGAACCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AATGGCTGGAGATGTAGGCGTAGGCACTATCCGCGATaGTGGCTCCTGAATGGCCGTGGTTGGGGGTCCAAT +
Preference number: 6 (lower is better)
Translates to: NGWRCRRRHYPR*WLLNGRGWGSN
Trigger: ATTGGACCCCCAACCACGGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AGGAGGAGCCATGGTCTCTGTTGGAGGTGCAATGGCTaGAGATGTAGGCGTAGGCACTATCCGCGATGGTGG +
Preference number: 6 (lower is better)
Translates to: RRSHGLCWRCNG*RCRRRHYPRWW
Trigger: CCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp TCCAGCAATGAGCAGGATGGCCGCGACCACCACGGCTaGGATAACGGTGTGCAGGTAAACATCGTCCTCACT +
Preference number: 6 (lower is better)
Translates to: SSNEQDGRDHHG*DNGVQVNIVLT
Trigger: AGTGAGGACGATGTTTACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCGGCCATCCTGCTCATTGCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp TCATCCCGCAGGGGTGTGTACTCTCCCACAGTGTCCTaGTTCAGAGGAGTGGTCTCGGGCATACTCTGGTTG +
Preference number: 6 (lower is better)
Translates to: SSRRGVYSPTVS*FRGVVSGILWL
Trigger: CAACCAGAGTATGCCCGAGACCACTCCTCTGAACCAGGACACTGTGGGAGAGTACACACCCCTGCGGGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 72 bp AAGCCTGGCCTTGAACCGTGCAGGAGCCTTGTCCCCTaGTGGGCGCTTGTGAACATGGATCTCGAAGGCATC +
Preference number: 6 (lower is better)
Translates to: KPGLEPCRSLVP*WALVNMDLEGI
Trigger: GATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAAGGCCAGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp CCAATGGCAGTAACAGGTGTAGGTGTGGCGTGGATCTaGCTCCGGAGTCGTTTGGGGAGAGTGGGCTTCTTA +
Preference number: 6 (lower is better)
Translates to: PMAVTGVGVAWI*LRSRLGRVGFL
Trigger: TAAGAAGCCCACTCTCCCCAAACGACTCCGGAGGCAGATCCACGCCACACCTACACCTGTTACTGCCATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp ATCCCTGACAGGAGGAGCCATGGTCTCTGTTGGAGGTaGAATGGCTGGAGATGTAGGCGTAGGCACTATCCG +
Preference number: 6 (lower is better)
Translates to: IPDRRSHGLCWR*NGWRCRRRHYP
Trigger: CGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GAACAGCCTCCTGGAAGTCGGAGAGAACTGAGTGCATaGACGCCTCAAGCTGGTTCTTCCAGTCCCTCACAG +
Preference number: 6 (lower is better)
Translates to: EQPPGSRRELSA*TPQAGSSSPSQ
Trigger: CTGTGAGGGACTGGAAGAACCAGCTTGAGGCGTCCATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AACAGGATCCCTGACAGGAGGAGCCATGGTCTCTGTTaGAGGTGCAATGGCTGGAGATGTAGGCGTAGGCAC +
Preference number: 6 (lower is better)
Translates to: NRIPDRRSHGLC*RCNGWRCRRRH
Trigger: GTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAGACCATGGCTCCTCCTGTCAGGGATCCTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GGCTGTGGGCTCTACATAGCCAGGAATTGTCAGTGTTaGGCGAATCTGGCCAGGAACCGTGGTACCAGCTTC +
Preference number: 6 (lower is better)
Translates to: GCGLYIARNCQC*ANLARNRGTSF
Trigger: GAAGCTGGTACCACGGTTCCTGGCCAGATTCGCCCAACACTGACAATTCCTGGCTATGTAGAGCCCACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CAA 72 bp CGGCTGTGGGCTCTACATAGCCAGGAATTGTCAGTGTaGGGCGAATCTGGCCAGGAACCGTGGTACCAGCTT +
Preference number: 6 (lower is better)
Translates to: RLWALHSQELSV*GESGQEPWYQL
Trigger: AAGCTGGTACCACGGTTCCTGGCCAGATTCGCCCAACACTGACAATTCCTGGCTATGTAGAGCCCACAGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AGAACACACTGGAAGTCTGGGGGACGTGGCTTCCATTaGCTCCCAGGCGTGCAGCACTCACTGAGATGTAAT +
Preference number: 6 (lower is better)
Translates to: RTHWKSGGRGFH*LPGVQHSLRCN
Trigger: ATTACATCTCAGTGAGTGCTGCACGCCTGGGAGCCAATGGAAGCCACGTCCCCCAGACTTCCAGTGTGTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GAGGTCAGCATCCAGAATCACTGTAAGGACAGTCACTaGCTCATCAGCAGCACAGGCAGATGGCACTACCTC +
Preference number: 6 (lower is better)
Translates to: EVSIQNHCKDSH*LISSTGRWHYL
Trigger: GAGGTAGTGCCATCTGCCTGTGCTGCTGATGAGCCAGTGACTGTCCTTACAGTGATTCTGGATGCTGACCTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AGCAATTTTCTTGTGAATGTCATTCACCACCGGTGCTaGATCCCCTGCAAGCCTGGCCTTGAACCGTGCAGG +
Preference number: 6 (lower is better)
Translates to: SNFLVNVIHHRC*IPCKPGLEPCR
Trigger: CCTGCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAATGACATTCACAAGAAAATTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp GTCCATTCCACCACGATAGAGCCCCGAGTGATGTTCTaGAGGGTGATGGAGCTGCAGTTTCGATCCCCAAAA +
Preference number: 6 (lower is better)
Translates to: VHSTTIEPRVMF*RVMELQFRSPK
Trigger: TTTTGGGGATCGAAACTGCAGCTCCATCACCCTTCAGAACATCACTCGGGGCTCTATCGTGGTGGAATGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp CAAAGCAATTTTCTTGTGAATGTCATTCACCACCGGTaGTGGATCCCCTGCAAGCCTGGCCTTGAACCGTGC +
Preference number: 6 (lower is better)
Translates to: QSNFLVNVIHHR*WIPCKPGLEPC
Trigger: GCACGGTTCAAGGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAATGACATTCACAAGAAAATTGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp AAGATGATAGGCACCCCCTTCTTAATAAAGGTGGCCTaGTCCTCAAGGGTCAGCTTGCCCTTCCTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: KMIGTPFLIKVA*SSRVSLPFLFL
Trigger: CAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAAGAAGGGGGTGCCTATCATCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS TCA 72 bp CCTTTATCAGTGTCAAGAGGAAGGCCTTCCAAAATATaGCTGTGTGGGTCCCAGTGTAGCCAAGACGGTAAG +
Preference number: 6 (lower is better)
Translates to: PLSVSRGRPSKI*LCGSQCSQDGK
Trigger: CTTACCGTCTTGGCTACACTGGGACCCACACAGTCATATTTTGGAAGGCCTTCCTCTTGACACTGATAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS GCA 72 bp GAGAAGCTCTGCATTCTGTTCAACAGATCGATCCTTTaGTTTGGGGTCATCTTGGTGAGGTCAGCATCCAGA +
Preference number: 6 (lower is better)
Translates to: EKLCILFNRSIL*FGVILVRSASR
Trigger: TCTGGATGCTGACCTCACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTGAACAGAATGCAGAGCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6
CDS CCA 72 bp GCTCTGCATTCTGTTCAACAGATCGATCCTTTGCTTTaGGGTCATCTTGGTGAGGTCAGCATCCAGAATCAC +
Preference number: 6 (lower is better)
Translates to: ALHSVQQIDPLL*GHLGEVSIQNH
Trigger: GTGATTCTGGATGCTGACCTCACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTGAACAGAATGCAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080435.9
ENSMUST00000166905.8
ENSMUST00000171412.7
ENSMUST00000191899.6