RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DACT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044548

Ensembl transcript IDs: ENSMUST00000061273.12, ENSMUST00000150639.2

Found 218 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCAGCGGTCCGGTGAGGGTTGAACTGCACTACTGTTCAGGCCAGTaGTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGG +
Preference number: 1 (lower is better)
Translates to: VSGPVRVELHYCSGQ*LVRAILGLESSPVR
Trigger: CCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGCAGTTCAACCCTCACCGGACCGCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR GCA 90 bp AGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATTTCTTTaGACCAAAGGACCAACACTTTATCCCAAAGACAAGCCCTCTAAG +
Preference number: 1 (lower is better)
Translates to: SNSGLGVKPSKGEFL*TKGPTLYPKDKPSK
Trigger: CTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR TCA 90 bp GAGATACATCCTTCACCTTCCATTAAAGGCACTAGCGTCCATACATaGCCGCGAGACATAATTTATCTTGGGTTTATCCTAGTGAAAGGA +
Preference number: 1 (lower is better)
Translates to: EIHPSPSIKGTSVHT*PRDIIYLGFILVKG
Trigger: TCCTTTCACTAGGATAAACCCAAGATAAATTATGTCTCGCGGTCATGTATGGACGCTAGTGCCTTTAATGGAAGGTGAAGGATGTATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR TCA 90 bp TTATCCACGAACCTTGGAAACAAAAGGTCTCATCCAAATAAAACTTaGACATCACACACCTGTACTTGGCCAGACACTCGGACGAAACAT +
Preference number: 1 (lower is better)
Translates to: LSTNLGNKRSHPNKT*TSHTCTWPDTRTKH
Trigger: ATGTTTCGTCCGAGTGTCTGGCCAAGTACAGGTGTGTGATGTTCAAGTTTTATTTGGATGAGACCTTTTGTTTCCAAGGTTCGTGGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CCA 90 bp CACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTaGCTACAAATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTG +
Preference number: 1 (lower is better)
Translates to: HFIPKTSPLRDKQLY*LQIRSREIERHQKL
Trigger: CAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 90 bp AGCGGTCCGGTGAGGGTTGAACTGCACTACTGTTCAGGCCAGTGCTaGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTG +
Preference number: 2 (lower is better)
Translates to: SGPVRVELHYCSGQC*VRAILGLESSPVRV
Trigger: CACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGCAGTTCAACCCTCACCGGACCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 90 bp CTGCACTACTGTTCAGGCCAGTGCTTGGTGAGAGCAATTCTGGGCTaGGAGTCAAGCCCAGTAAGGGTGAATTTCTTTGCACCAAAGGAC +
Preference number: 2 (lower is better)
Translates to: LHYCSGQCLVRAILG*ESSPVRVNFFAPKD
Trigger: GTCCTTTGGTGCAAAGAAATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 90 bp GACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTaGTATTGGCTACAAATTAGGAGCAGAGAGATAGAAAGGCATCAA +
Preference number: 2 (lower is better)
Translates to: DQHFIPKTSPLRDKQ*YWLQIRSREIERHQ
Trigger: TTGATGCCTTTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR-3UTR TCA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCCATCCAAATAAAACTTaGACATCACACACCTGTACT +
Preference number: 2 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSHPNKT*TSHTCT
Trigger: AGTACAGGTGTGTGATGTTCAAGTTTTATTTGGATG...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGTTTATCCACGAACCTTaGAAACAAAAGGTCTCATCC +
Preference number: 2 (lower is better)
Translates to: IRSREIERHQKLLDIWPMFIHEP*KQKVSS
Trigger: GGATGAGACCTTTTGTTTCCAAGGTTCGTGGATAAA...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR GCA 72 bp CCGGTGAGGGTTGAACTGCACTACTGTTCAGGCCAGTaGTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGC +
Preference number: 3 (lower is better)
Translates to: PVRVELHYCSGQ*LVRAILGLESS
Trigger: GCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGCAGTTCAACCCTCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR TCA 72 bp CGAAGGCGGAGGCACTACAGGTGGCAAAGGTTTTTGTaGATCCTTTTAAGGTCCTATCAGTCTCCCTATCCA +
Preference number: 3 (lower is better)
Translates to: RRRRHYRWQRFL*ILLRSYQSPYP
Trigger: TGGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTGTAGTGCCTCCGCCTTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR-3UTR CAA 90 bp GCACTACTGTTCAGGCCAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCTAAGGGACAAACAGTaGTATTGGCTACAAATTAGG +
Preference number: 3 (lower is better)
Translates to: ALLFRPVLGESNSGLGVKLRDKQ*YWLQIR
Trigger: CCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAG...CTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR GCA 72 bp GGGCTTGGAGTCAAGCCCAGTAAGGGTGAATTTCTTTaGACCAAAGGACCAACACTTTATCCCAAAGACAAG +
Preference number: 3 (lower is better)
Translates to: GLGVKPSKGEFL*TKGPTLYPKDK
Trigger: CTTGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGGGCTTGACTCCAAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR TCA 72 bp CCTTCACCTTCCATTAAAGGCACTAGCGTCCATACATaGCCGCGAGACATAATTTATCTTGGGTTTATCCTA +
Preference number: 3 (lower is better)
Translates to: PSPSIKGTSVHT*PRDIIYLGFIL
Trigger: TAGGATAAACCCAAGATAAATTATGTCTCGCGGTCATGTATGGACGCTAGTGCCTTTAATGGAAGGTGAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CCA 72 bp CCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTaGCTACAAATTAGGAGCAGAGAGATAGAAAGGCAT +
Preference number: 3 (lower is better)
Translates to: PKTSPLRDKQLY*LQIRSREIERH
Trigger: ATGCCTTTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAATCTCCTCCAGGCGGCTaGGCTGCGCCGCGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: LYTIVCNAPQPESPFRDKSPPGG*AAPRLP
Trigger: GGGGAGACGCGGCGCAGCGCAGCCGCCTGGAGGAGA...TTTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGCCAGCGTGGCCTCCTaGCGCTCGCGGGTACGCTGC +
Preference number: 4 (lower is better)
Translates to: LPTLHNCMQCPSTGKPFQASVAS*RSRVRC
Trigger: GCAGCGTACCCGCGAGCGCCAGGAGGCCACGCTGGC...CTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp GCACTACTGTTCAGGCCAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGGGAGGTCTGGGGCCGTaGCCGTTTGAATCGGGAGAG +
Preference number: 4 (lower is better)
Translates to: ALLFRPVLGESNSGLGVKGGLGP*PFESGE
Trigger: CTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCC...CTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATAGTACTCGGAGTCGCTaGGCACGTAGGCATAGGGGC +
Preference number: 4 (lower is better)
Translates to: QCLVRAILGLESSPVRVNSTRSR*ARRHRG
Trigger: GCCCCTATGCCTACGTGCCCAGCGACTCCGAGTACT...ATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAAAGCAGCTCTTGGCGTTaGCGCAGGTACCCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LYTIVCNAPQPESPFRDKSSSWR*RRYPSS
Trigger: GGAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCT...TTTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATACGGGTGTGGAGGTCTaGGGCCGTGACCGTTTGAAT +
Preference number: 4 (lower is better)
Translates to: QCLVRAILGLESSPVRVNTGVEV*GRDRLN
Trigger: ATTCAAACGGTCACGGCCCCAGACCTCCACACCCGT...ATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 72 bp GTGAGGGTTGAACTGCACTACTGTTCAGGCCAGTGCTaGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCA +
Preference number: 4 (lower is better)
Translates to: VRVELHYCSGQC*VRAILGLESSP
Trigger: TGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGCAGTTCAACCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGACCCCCGCTCTCCTCTaGGTCGCTGGTGGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLTPALL*VAGGGA
Trigger: AGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGT...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAGGGGCCGTGACCGTTTaGATCGGGAGAGTCTGGACA +
Preference number: 4 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQGAVTV*IGRVWT
Trigger: TGTCCAGACTCTCCCGATTCAAACGGTCACGGCCCC...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGAGTCGCTGGTGGTGGTaGTCTCGCCCACGAAGTCGC +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLSRWWW*SRPRSR
Trigger: GCGACTTCGTGGGCGAGAGCACCACCACCAGCGACT...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACGCACCAGCAGCTCTTaGCGTTGCCGCAGGTACCCC +
Preference number: 4 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTRTSSS*RCRRYP
Trigger: GGGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCGGCAACCGTCTGAGATaGTCAAGGCCGCCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFGNRLR*SRPPPR
Trigger: CCTTGGAGGCGGCCTTGACCATCTCAGACGGTTGCC...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp GCACTACTGTTCAGGCCAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGAGCCACAGCATGAAGTaGACTGGGGTAGCGATATAC +
Preference number: 4 (lower is better)
Translates to: ALLFRPVLGESNSGLGVKSHSMK*TGVAIY
Trigger: GTATATCGCTACCCCAGTCCACTTCATGCTGTGGCT...CTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACAGTAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCCTGAGTCGCTGGTGGTaGTGCTCTCGCCCACGAAGT +
Preference number: 4 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFLSRWW*CSRPRS
Trigger: ACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAG...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGCCGCCTCCAAGGGGCTaGAGAAGCAGGTGCTGGAAT +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLPPPRG*RSRCWN
Trigger: ATTCCAGCACCTGCTTCTGCAGCCCCTTGGAGGCGG...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGCAAGGTGGCGCTCCTTaGGACACCCGGGTTCCTGTG +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMQGGAP*DTRVPV
Trigger: CACAGGAACCCGGGTGTCGCAAGGAGCGCCACCTTG...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATTGCAGAAGCAGGTGCTaGAATGGCAACTGGACAAAC +
Preference number: 4 (lower is better)
Translates to: QCLVRAILGLESSPVRVNCRSRC*NGNWTN
Trigger: GTTTGTCCAGTTGCCATTCCAGCACCTGCTTCTGCA...ATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCTCCACCACCGTGGAGTaGAAGAGCGACTCGCACTCC +
Preference number: 4 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSSTTVE*KSDSHS
Trigger: GGAGTGCGAGTCGCTCTTCCACTCCACGGTGGTGGA...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGCCTCTGAGTCGCTGGTaGTGGTGCTCTCGCCCACGA +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMPLSRW*WCSRPR
Trigger: TCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGG...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGCACCTTGTGAGCTCTTaGGAGGCTGCCTTGGCGGCT +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMHLVSS*EAALAA
Trigger: AGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTG...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAACAGCGGAGGCCTGATTaGTTTCCTTCATGGATTCCC +
Preference number: 4 (lower is better)
Translates to: LYTIVCNAPQPESPFRDKQRRPD*FPSWIP
Trigger: GGGAATCCATGAAGGAAAGCAATCAGGCCTCCGCTG...TTTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGGCACTTCTTGCCTGCTaGCCGCGGTTTCTCCCTGAC +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMALLAC*PRFLPD
Trigger: GTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGC...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGGGCACATGCTTGCTTTaGGGTTCCATGGCGGCGCCT +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMGTCLL*GSMAAP
Trigger: AGGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCC...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGCTGCCTTGGCGGCTTTaGGCACATGCTTGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLLPWRL*AHACFG
Trigger: CCCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAG...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGTCTGCTCGTCCTCGCTaGTGTCCACCACCGTGGAGT +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMSARPR*CPPPWS
Trigger: ACTCCACGGTGGTGGACACCAGCGAGGACGAGCAGA...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 72 bp TGTTCAGGCCAGTGCTTGGTGAGAGCAATTCTGGGCTaGGAGTCAAGCCCAGTAAGGGTGAATTTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: CSGQCLVRAILG*ESSPVRVNFFA
Trigger: TGCAAAGAAATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTGGCCTGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGCGGCTTGACACCTTGTaGGCTCTTGAGAGGCTGCCT +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMRLDTL*ALERLP
Trigger: AGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCG...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGTGCCCCGGAATGAACTaGGCTTTCACCAGATGCCCT +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLCPGMN*AFTRCP
Trigger: AGGGCATCTGGTGAAAGCTCAGTTCATTCCGGGGCA...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAACTGTCTGTCTCCAGGTaGTCTTCAGATGTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQLSVSR*SSDVFS
Trigger: GGAGAAGACATCTGAAGAGCACCTGGAGACAGACAG...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAACTTCCCTCAGAGTGTTaGCCGTCAGACAAAGGAGAA +
Preference number: 4 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQLPSEC*PSDKGE
Trigger: TTCTCCTTTGTCTGACGGGCAACACTCTGAGGGAAG...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACAGATGTCGCTGGCATaGCTCCCAAGCCCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PLRDKQLYWLQIRSREIEQMSLA*LPSPSS
Trigger: AGAGGAGGGGCTTGGGAGCCATGCCAGCGACATCTG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGCGCCGAAGCAGTTGGTaGTGTAGTTGCTCTGCTCGT +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLRRSSW*CSCSAR
Trigger: ACGAGCAGAGCAACTACACCACCAACTGCTTCGGCG...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ACAGGAATATCAAAACAGGAATCCAAAGAACTACTACTCATGCACAAAACATGCCGCCTTCGCTCACGCTaGACTCGCTGTCGCCGAAGC +
Preference number: 4 (lower is better)
Translates to: TGISKQESKELLLMHKTCRLRSR*TRCRRS
Trigger: GCTTCGGCGACAGCGAGTCCAGCGTGAGCGAAGGCG...GCATGTTTTGTGCATGAGTAGTAGTTCTTTGGATTCCTGTTTTGATATTCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAAGAGTCTGGACAAACTaGGACCAGATTAAACCCCCG +
Preference number: 4 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQRVWTN*DQIKPP
Trigger: CGGGGGTTTAATCTGGTCCCAGTTTGTCCAGACTCT...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCTGGACAAACACTCACTaGACACGGAGTTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFWTNTH*TRSWRS
Trigger: ACTCCTCCAACTCCGTGTTCAGTGAGTGTTTGTCCA...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAAATGAGCCCTCGCTTTTaGAGTCCAAGGCCGGCCTGT +
Preference number: 4 (lower is better)
Translates to: PLRDKQLYWLQIRSREIEMSPRF*SPRPAC
Trigger: ACAGGCCGGCCTTGGACTTCAAAAGCGAGGGCTCAT...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACCTTCCTCGAGGCTTTaGGATGAGCCCTCGCTTTTG +
Preference number: 4 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTPSSRL*DEPSLL
Trigger: CAAAAGCGAGGGCTCATCTCAAAGCCTCGAGGAAGG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGGAGTCTTTGGACCTCTaGTTAGGAGGGGAGAATGGC +
Preference number: 4 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLESLDL*LGGENG
Trigger: GCCATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTC...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACCTGCTGCCCCGGAATaGACTGAGCTTTCACCAGAT +
Preference number: 4 (lower is better)
Translates to: PLRDKQLYWLQIRSREIEPAAPE*TELSPD
Trigger: ATCTGGTGAAAGCTCAGTTCATTCCGGGGCAGCAGG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGTTTAGGATTCACATCTaGAGATTTGGGGCAACCGTC +
Preference number: 4 (lower is better)
Translates to: LPTLHNCMQCPSTGKPFQFRIHI*RFGATV
Trigger: GACGGTTGCCCCAAATCTGCAGATGTGAATCCTAAA...CTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GATCAAGGAGCGAGTTCACGGCTTAAAAATTTTATCCACGAACCTTGGAAACAAGCGGCTTTGGGCACATaGTTGCTTTGGGGTTCCATG +
Preference number: 4 (lower is better)
Translates to: DQGASSRLKNFIHEPWKQAALGT*LLWGSM
Trigger: CATGGAACCCCAAAGCAAGCATGTGCCCAAAGCCGC...TTGTTTCCAAGGTTCGTGGATAAAATTTTTAAGCCGTGAACTCGCTCCTTGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GATCAAGGAGCGAGTTCACGGCTTAAAAATTTTATCCACGAACCTTGGAAACAAAGTTGGTGGTGTAGTTaGTCTGCTCGTCCTCGCTGG +
Preference number: 4 (lower is better)
Translates to: DQGASSRLKNFIHEPWKQSWWCS*SARPRW
Trigger: CCAGCGAGGACGAGCAGAGCAACTACACCACCAACT...TTGTTTCCAAGGTTCGTGGATAAAATTTTTAAGCCGTGAACTCGCTCCTTGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATAATTGTCTGTTTTGGTaGCGTTCAGTTCAGATCCAA +
Preference number: 4 (lower is better)
Translates to: QCLVRAILGLESSPVRVNNCLFW*RSVQIQ
Trigger: TTGGATCTGAACTGAACGCCACCAAAACAGACAATT...ATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACAGATTGCTTTCCTTCATaGATTCCCCCAGCCCGGCTT +
Preference number: 4 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTDCFPS*IPPARL
Trigger: AAGCCGGGCTGGGGGAATCCATGAAGGAAAGCAATC...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACATGTCGCCGAAGCAGTTaGTGGTGTAGTTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTCRRSS*WCSCSA
Trigger: AGCAGAGCAACTACACCACCAACTGCTTCGGCGACA...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR TCA 90 bp CTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGTCAAGTTCTTGCAACTaGTTCAACAAACCGGCATCT +
Preference number: 4 (lower is better)
Translates to: LPTLHNCMQCPSTGKPFQSSSCN*FNKPAS
Trigger: AGATGCCGGTTTGTTGAATCAGTTGCAAGAACTTGA...CTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACATTTTCTTACTGGATaGAGGATGGGAAGCGGACCA +
Preference number: 4 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTHFLTG*RMGSGP
Trigger: TGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCGGGTGTGTTTTCTTCTaGACGAGGCTCAAAATATAC +
Preference number: 4 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFGCVFF*TRLKIY
Trigger: GTATATTTTGAGCCTCGTGCAGAAGAAAACACACCC...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGAAGCAGGTGCTGGAATaGCAACTGGACAAACACTCA +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMKQVLE*QLDKHS
Trigger: TGAGTGTTTGTCCAGTTGCCATTCCAGCACCTGCTT...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGCAGCATGAAGTGGACTaGGGTAGCGATATACGTCAT +
Preference number: 4 (lower is better)
Translates to: IRSREIERHQKLLDIWPMQHEVD*GSDIRH
Trigger: ATGACGTATATCGCTACCCCAGTCCACTTCATGCTG...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCCAAACTGCTTGGAGATaGCAGGGAATTGTCTGTTTT +
Preference number: 4 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFQTAWR*QGIVCF
Trigger: AAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTG...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp GATCAAGGAGCGAGTTCACGGCTTAAAAATTTTATCCACGAACCTTGGAAACAAGCAGAGCCAACCTCTTaGTTTCTAACTGGTCTGTCT +
Preference number: 4 (lower is better)
Translates to: DQGASSRLKNFIHEPWKQAEPTS*FLTGLS
Trigger: AGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGC...TTGTTTCCAAGGTTCGTGGATAAAATTTTTAAGCCGTGAACTCGCTCCTTGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAGACACAAGATCACACTaGTATTTAGGATTCACATCT +
Preference number: 4 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQDTRSH*YLGFTS
Trigger: AGATGTGAATCCTAAATACCAGTGTGATCTTGTGTC...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp ACAGGAATATCAAAACAGGAATCCAAAGAACTACTACTCATGCACAAAACATGCTGGAGGCTGTTCTTCTaGGACATCTTTTTCGGGAGC +
Preference number: 4 (lower is better)
Translates to: TGISKQESKELLLMHKTCWRLFF*DIFFGS
Trigger: GCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCA...GCATGTTTTGTGCATGAGTAGTAGTTCTTTGGATTCCTGTTTTGATATTCCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp ACAGGAATATCAAAACAGGAATCCAAAGAACTACTACTCATGCACAAAACATGCGGACCACAAACTGCTTaGAGATGGCAGGGAATTGTC +
Preference number: 4 (lower is better)
Translates to: TGISKQESKELLLMHKTCGPQTA*RWQGIV
Trigger: GACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCC...GCATGTTTTGTGCATGAGTAGTAGTTCTTTGGATTCCTGTTTTGATATTCCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR GCA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACTCAGGTCACTTATCTaGTTGTCAAGTTCTTGCAAC +
Preference number: 4 (lower is better)
Translates to: PLRDKQLYWLQIRSREIELRSLI*LSSSCN
Trigger: GTTGCAAGAACTTGACAAGCAGATAAGTGACCTGAG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CCA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACTCTTGCTTTCTAACTaGTCTGTCTTTGAGTCTTTG +
Preference number: 4 (lower is better)
Translates to: PLRDKQLYWLQIRSREIELLLSN*SVFESL
Trigger: CAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
3UTR CAA 72 bp TTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTaGTATTGGCTACAAATTAGGAGCAGAGAGATAGAA +
Preference number: 4 (lower is better)
Translates to: FIPKTSPLRDKQ*YWLQIRSREIE
Trigger: TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 90 bp CCCGGCCATGCGCGTGCGCCCTGCTACCCGCCCGATGGCCGCCGGTaGCCAGGGCCCTACCGGGAAGGCCAGCGTCCTGCAGCCCGCCAC +
Preference number: 5 (lower is better)
Translates to: PGHARAPCYPPDGRR*PGPYREGQRPAARH
Trigger: GTGGCGGGCTGCAGGACGCTGGCCTTCCCGGTAGGGCCCTGGGCACCGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GTCCCGGAGCAGCGCAGCGCACCGCGCACCAGCAGCTCTTGGCGTTaGCGCAGGTACCCCAGCTCCGCCAGCCCCGCCAGCGTGGCCTCC +
Preference number: 5 (lower is better)
Translates to: VPEQRSAPRTSSSWR*RRYPSSASPASVAS
Trigger: GGAGGCCACGCTGGCGGGGCTGGCGGAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCGCGGTGCGCTGCGCTGCTCCGGGAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GCTTCGGTTTGGCCACCACGGGCTCCCGGCCATGCGCGTGCGCCCTaGTACCCGCCCGATGGCCGCCGGTGCCCAGGGCCCTACCGGGAA +
Preference number: 5 (lower is better)
Translates to: ASVWPPRAPGHARAP*YPPDGRRCPGPYRE
Trigger: TTCCCGGTAGGGCCCTGGGCACCGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp CGCTTGTGCTTCGGTTTGGCCACCACGGGCTCCCGGCCATGCGCGTaGGCCCTGCTACCCGCCCGATGGCCGCCGGTGCCCAGGGCCCTA +
Preference number: 5 (lower is better)
Translates to: RLCFGLATTGSRPCA*ALLPARWPPVPRAL
Trigger: TAGGGCCCTGGGCACCGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp TCGGTTCGCTTGTGCTTCGGTTTGGCCACCACGGGCTCCCGGCCATaGGCGTGCGCCCTGCTACCCGCCCGATGGCCGCCGGTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: SVRLCFGLATTGSRP*ACALLPARWPPVPR
Trigger: CCTGGGCACCGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCGAACCGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp TGCCCGCGGTTTCTCCCTGACGGTGGGCAGGCCGTGTTCCATGGCTaGCTGGCCGCGGGCCTTCAAGGTGGCGCTCCTTGCGACACCCGG +
Preference number: 5 (lower is better)
Translates to: CPRFLPDGGQAVFHG*LAAGLQGGAPCDTR
Trigger: CCGGGTGTCGCAAGGAGCGCCACCTTGAAGGCCCGCGGCCAGGCAGCCATGGAACACGGCCTGCCCACCGTCAGGGAGAAACCGCGGGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GCGGGCCTTCAAGGTGGCGCTCCTTGCGACACCCGGGTTCCTGTGTaGACGGTGAGGCCTGGCGGCCGCCTGCTGCCCCGGAATGAACTG +
Preference number: 5 (lower is better)
Translates to: AGLQGGAPCDTRVPV*TVRPGGRLLPRNEL
Trigger: CAGTTCATTCCGGGGCAGCAGGCGGCCGCCAGGCCTCACCGTGCACACAGGAACCCGGGTGTCGCAAGGAGCGCCACCTTGAAGGCCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CGCGGTTTCTCCCTGACGGTGGGCAGGCCGTGTTCCATGGCTGCCTaGCCGCGGGCCTTCAAGGTGGCGCTCCTTGCGACACCCGGGTTC +
Preference number: 5 (lower is better)
Translates to: RGFSLTVGRPCSMAA*PRAFKVALLATPGF
Trigger: GAACCCGGGTGTCGCAAGGAGCGCCACCTTGAAGGCCCGCGGCCAGGCAGCCATGGAACACGGCCTGCCCACCGTCAGGGAGAAACCGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp ACTCCGCCGAGTACTCGGAGTCGCTGGGCACGTAGGCATAGGGGCTaGCGTAAGGCAGGGCGACAGCCACCCGGTAGGCAGCCCCGTGCT +
Preference number: 5 (lower is better)
Translates to: TPPSTRSRWARRHRG*RKAGRQPPGRQPRA
Trigger: AGCACGGGGCTGCCTACCGGGTGGCTGTCGCCCTGCCTTACGCCAGCCCCTATGCCTACGTGCCCAGCGACTCCGAGTACTCGGCGGAGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CTGACGATTTCCACCGCCGGTAGTCGGTTCGCTTGTGCTTCGGTTTaGCCACCACGGGCTCCCGGCCATGCGCGTGCGCCCTGCTACCCG +
Preference number: 5 (lower is better)
Translates to: LTISTAGSRFACASV*PPRAPGHARAPCYP
Trigger: CGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCGAACCGACTACCGGCGGTGGAAATCGTCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp AGGCTGCCTTGGCGGCTTTGGGCACATGCTTGCTTTGGGGTTCCATaGCGGCGCCTGCCGAGCAGCTCTCCGGCAGAGCCAACCTCTTGC +
Preference number: 5 (lower is better)
Translates to: RLPWRLWAHACFGVP*RRLPSSSPAEPTSC
Trigger: GCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp TGGAGTGGAAGAGCGACTCGCACTCCGCCGAGTACTCGGAGTCGCTaGGCACGTAGGCATAGGGGCTGGCGTAAGGCAGGGCGACAGCCA +
Preference number: 5 (lower is better)
Translates to: WSGRATRTPPSTRSR*ARRHRGWRKAGRQP
Trigger: TGGCTGTCGCCCTGCCTTACGCCAGCCCCTATGCCTACGTGCCCAGCGACTCCGAGTACTCGGCGGAGTGCGAGTCGCTCTTCCACTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp AAGGCCGGCCTGTCCAGCGCGGGCACAGCCTGGAGGCTGTTCTTCTaGGACATCTTTTTCGGGAGCTGCAGGGCTTTGCTCTCTGCGGGG +
Preference number: 5 (lower is better)
Translates to: KAGLSSAGTAWRLFF*DIFFGSCRALLSAG
Trigger: CCCCGCAGAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCCCGCGCTGGACAGGCCGGCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 90 bp TCACCAGATGCCCTTCCTCGAGGCTTTGAGATGAGCCCTCGCTTTTaGAGTCCAAGGCCGGCCTGTCCAGCGCGGGCACAGCCTGGAGGC +
Preference number: 5 (lower is better)
Translates to: SPDALPRGFEMSPRF*SPRPACPARAQPGG
Trigger: GCCTCCAGGCTGTGCCCGCGCTGGACAGGCCGGCCTTGGACTTCAAAAGCGAGGGCTCATCTCAAAGCCTCGAGGAAGGGCATCTGGTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 90 bp AGCCCTCCGGGCCCTCCGCAGGGCTTCTTCGTAGGAGACCTCGGCTaGCGATTTCCACCGCCGGTAGTCGGTTCGCTTGTGCTTCGGTTT +
Preference number: 5 (lower is better)
Translates to: SPPGPPQGFFVGDLG*RFPPPVVGSLVLRF
Trigger: AAACCGAAGCACAAGCGAACCGACTACCGGCGGTGGAAATCGTCAGCCGAGGTCTCCTACGAAGAAGCCCTGCGGAGGGCCCGGAGGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GGCACAGCCTGGAGGCTGTTCTTCTGCGACATCTTTTTCGGGAGCTaGAGGGCTTTGCTCTCTGCGGGGGCGACAGGGCCTCTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: GTAWRLFFCDIFFGS*RALLSAGATGPLPG
Trigger: TCCTGGCAGAGGCCCTGTCGCCCCCGCAGAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GGGACCAGATTAAACCCCCGCTCTCCTCTGAGTCGCTGGTGGTGGTaGTCTCGCCCACGAAGTCGCCTTCGCTCACGCTGGACTCGCTGT +
Preference number: 5 (lower is better)
Translates to: GTRLNPRSPLSRWWW*SRPRSRLRSRWTRC
Trigger: ACAGCGAGTCCAGCGTGAGCGAAGGCGACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAATCTGGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp TGTCGCCGAAGCAGTTGGTGGTGTAGTTGCTCTGCTCGTCCTCGCTaGTGTCCACCACCGTGGAGTGGAAGAGCGACTCGCACTCCGCCG +
Preference number: 5 (lower is better)
Translates to: CRRSSWWCSCSARPR*CPPPWSGRATRTPP
Trigger: CGGCGGAGTGCGAGTCGCTCTTCCACTCCACGGTGGTGGACACCAGCGAGGACGAGCAGAGCAACTACACCACCAACTGCTTCGGCGACA
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CGAAGTCGCCTTCGCTCACGCTGGACTCGCTGTCGCCGAAGCAGTTaGTGGTGTAGTTGCTCTGCTCGTCCTCGCTGGTGTCCACCACCG +
Preference number: 5 (lower is better)
Translates to: RSRLRSRWTRCRRSS*WCSCSARPRWCPPP
Trigger: CGGTGGTGGACACCAGCGAGGACGAGCAGAGCAACTACACCACCAACTGCTTCGGCGACAGCGAGTCCAGCGTGAGCGAAGGCGACTTCG
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 90 bp TCCTGTGTGCACGGTGAGGCCTGGCGGCCGCCTGCTGCCCCGGAATaGACTGAGCTTTCACCAGATGCCCTTCCTCGAGGCTTTGAGATG +
Preference number: 5 (lower is better)
Translates to: SCVHGEAWRPPAAPE*TELSPDALPRGFEM
Trigger: CATCTCAAAGCCTCGAGGAAGGGCATCTGGTGAAAGCTCAGTTCATTCCGGGGCAGCAGGCGGCCGCCAGGCCTCACCGTGCACACAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp GGATTCCCCCAGCCCGGCTTGACACCTTGTGAGCTCTTGAGAGGCTaGCTTGGCGGCTTTGGGCACATGCTTGCTTTGGGGTTCCATGGC +
Preference number: 5 (lower is better)
Translates to: GFPQPGLTPCELLRG*LGGFGHMLALGFHG
Trigger: GCCATGGAACCCCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCGGGCTGGGGGAATCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp TCGCTTTTGAAGTCCAAGGCCGGCCTGTCCAGCGCGGGCACAGCCTaGAGGCTGTTCTTCTGCGACATCTTTTTCGGGAGCTGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: SLLKSKAGLSSAGTA*RLFFCDIFFGSCRA
Trigger: AGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCCCGCGCTGGACAGGCCGGCCTTGGACTTCAAAAGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp CTTATTTGTATCCGAGTCGTCTGGGAAACGGCACTTCTTGCCTGCTaGCCGCGGTTTCTCCCTGACGGTGGGCAGGCCGTGTTCCATGGC +
Preference number: 5 (lower is better)
Translates to: LICIRVVWETALLAC*PRFLPDGGQAVFHG
Trigger: GCCATGGAACACGGCCTGCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 90 bp TTTCTTATTTGTATCCGAGTCGTCTGGGAAACGGCACTTCTTGCCTaGTGCCCGCGGTTTCTCCCTGACGGTGGGCAGGCCGTGTTCCAT +
Preference number: 5 (lower is better)
Translates to: FLICIRVVWETALLA*CPRFLPDGGQAVFH
Trigger: ATGGAACACGGCCTGCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 90 bp ACATTCCAACCATCCTATGAGATCTGCAGATTTGGGGCAACCGTCTaGGATGGTCAAGGCCGCCTCCAAGGGGCTGCAGAAGCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: TFQPSYEICRFGATV*DGQGRLQGAAEAGA
Trigger: AGCACCTGCTTCTGCAGCCCCTTGGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATCTCATAGGATGGTTGGAATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS CCA 90 bp ATGGTCAAGGCCGCCTCCAAGGGGCTGCAGAAGCAGGTGCTGGAATaGCAACTGGACAAACACTCACTGAACACGGAGTTGGAGGAGTTA +
Preference number: 5 (lower is better)
Translates to: MVKAASKGLQKQVLE*QLDKHSLNTELEEL
Trigger: TAACTCCTCCAACTCCGTGTTCAGTGAGTGTTTGTCCAGTTGCCATTCCAGCACCTGCTTCTGCAGCCCCTTGGAGGCGGCCTTGACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAGGGCACATGCTTGCTTaGGGGTTCCATGGCGGCGCC +
Preference number: 5 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQGHMLA*GFHGGA
Trigger: GGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCCC...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS TCA 90 bp AAGGGAATTAAATTGTGGTGTGGAGGGGGAACTGCACACTGTCCCTaGGGCCTGGTCTTCACAGGGGCCGCCTTTACATTCCAACCATCC +
Preference number: 5 (lower is better)
Translates to: KGIKLWCGGGTAHCP*GLVFTGAAFTFQPS
Trigger: GGATGGTTGGAATGTAAAGGCGGCCCCTGTGAAGACCAGGCCTCAGGGACAGTGTGCAGTTCCCCCTCCACACCACAATTTAATTCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS GCA 90 bp ATGGCAGGGAATTGTCTGTTTTGGTGGCGTTCAGTTCAGATCCAATaGAGATGTCGCTGGCATGGCTCCCAAGCCCCTCCTCTTCCCTCA +
Preference number: 5 (lower is better)
Translates to: MAGNCLFWWRSVQIQ*RCRWHGSQAPPLPS
Trigger: TGAGGGAAGAGGAGGGGCTTGGGAGCCATGCCAGCGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CTCCTCTTCCCTCAGAGTGTTGCCCGTCAGACAAAGGAGAAACATTaGGCTCTGCACAGCCACAGCATGAAGTGGACTGGGGTAGCGATA +
Preference number: 5 (lower is better)
Translates to: LLFPQSVARQTKEKH*ALHSHSMKWTGVAI
Trigger: TATCGCTACCCCAGTCCACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTCTGACGGGCAACACTCTGAGGGAAGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CCTGCCGAGCAGCTCTCCGGCAGAGCCAACCTCTTGCTTTCTAACTaGTCTGTCTTTGAGTCTTTGGACCTCTGCTTAGGAGGGGAGAAT +
Preference number: 5 (lower is better)
Translates to: PAEQLSGRANLLLSN*SVFESLDLCLGGEN
Trigger: ATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CTTGGCGGAGGTCTTCCTGAATTTCTTATTTGTATCCGAGTCGTCTaGGAAACGGCACTTCTTGCCTGCTGCCCGCGGTTTCTCCCTGAC +
Preference number: 5 (lower is better)
Translates to: LGGGLPEFLICIRVV*ETALLACCPRFLPD
Trigger: GTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAGAAATTCAGGAAGACCTCCGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CGGACCACAAACTGCTTGGAGATGGCAGGGAATTGTCTGTTTTGGTaGCGTTCAGTTCAGATCCAATGCAGATGTCGCTGGCATGGCTCC +
Preference number: 5 (lower is better)
Translates to: RTTNCLEMAGNCLFW*RSVQIQCRCRWHGS
Trigger: GGAGCCATGCCAGCGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp AGCCTTGATTTTGACAAAGGTTTTTGTGGGACGGGTGTGGAGGTCTaGGGCCGTGACCGTTTGAATCGGGAGAGTCTGGACAAACTGGGA +
Preference number: 5 (lower is better)
Translates to: SLDFDKGFCGTGVEV*GRDRLNRESLDKLG
Trigger: TCCCAGTTTGTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp TTAAATTGTGGTGTGGAGGGGGAACTGCACACTGTCCCTGAGGCCTaGTCTTCACAGGGGCCGCCTTTACATTCCAACCATCCTATGAGA +
Preference number: 5 (lower is better)
Translates to: LNCGVEGELHTVPEA*SSQGPPLHSNHPMR
Trigger: TCTCATAGGATGGTTGGAATGTAAAGGCGGCCCCTGTGAAGACCAGGCCTCAGGGACAGTGTGCAGTTCCCCCTCCACACCACAATTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACGCTTGTGCTTCGGTTaGGCCACCACGGGCTCCCGG +
Preference number: 5 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTRLCFG*ATTGSR
Trigger: CCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAAGCGCACCAGCAGCTCTaGGCGTTGCCGCAGGTACCC +
Preference number: 5 (lower is better)
Translates to: PLRDKQLYWLQIRSREIEAHQQL*ALPQVP
Trigger: GGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCGC...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CAGTGCTTGGTGAGAGCAATTCTGGGCTTGGAGTCAAGCCCAGTAAGGGTGAATGACAAAGGAGAAACATaGGGCTCTGCACAGCCACAG +
Preference number: 5 (lower is better)
Translates to: QCLVRAILGLESSPVRVNDKGET*GSAQPQ
Trigger: CTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTC...ATTCACCCTTACTGGGCTTGACTCCAAGCCCAGAATTGCTCTCACCAAGCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGCTTTGGGCACATGCTaGCTTTGGGGTTCCATGGCG +
Preference number: 5 (lower is better)
Translates to: LPTLHNCMQCPSTGKPFQALGTC*LWGSMA
Trigger: CGCCATGGAACCCCAAAGCAAGCATGTGCCCAAAGC...CTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACAGCAGCTCTTGGCGTaGCCGCAGGTACCCCAGCTC +
Preference number: 5 (lower is better)
Translates to: PLRDKQLYWLQIRSREIEQQLLA*PQVPQL
Trigger: GAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCTG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCGCTGCCTTGGCGGCTTaGGGCACATGCTTGCTTTGG +
Preference number: 5 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSAALAA*GTCLLW
Trigger: CCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAGC...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCTGGGGCCGTGACCGTTaGAATCGGGAGAGTCTGGAC +
Preference number: 5 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSWGRDR*NRESLD
Trigger: GTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCA...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 90 bp CTTCTGCACGAGGCTCAAAATATACCCATCCATTTTCTTACTGGATaGAGGATGGGAAGCGGACCACAAACTGCTTGGAGATGGCAGGGA +
Preference number: 5 (lower is better)
Translates to: LLHEAQNIPIHFLTG*RMGSGPQTAWRWQG
Trigger: TCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATGGGTATATTTTGAGCCTCGTGCAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CTTACTGGATGCAGGATGGGAAGCGGACCACAAACTGCTTGGAGATaGCAGGGAATTGTCTGTTTTGGTGGCGTTCAGTTCAGATCCAAT +
Preference number: 5 (lower is better)
Translates to: LTGCRMGSGPQTAWR*QGIVCFGGVQFRSN
Trigger: ATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CAAACACATCTGTTTTGTATTCTTAAAGTTCACACTACTGCCCGGTaGGACGCCACTAGGGGCCCTGACACACACACTTCCATTCCTCAG +
Preference number: 5 (lower is better)
Translates to: QTHLFCILKVHTTAR*DATRGPDTHTSIPQ
Trigger: CTGAGGAATGGAAGTGTGTGTGTCAGGGCCCCTAGTGGCGTCCCACCGGGCAGTAGTGTGAACTTTAAGAATACAAAACAGATGTGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp ACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGACAAGGCAGAGCCAACCTCTaGCTTTCTAACTGGTCTGTC +
Preference number: 5 (lower is better)
Translates to: TLHNCMQCPSTGKPFQGQGRANL*LSNWSV
Trigger: GACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCC...TTGTCCCTGAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp ATTAGGAGCAGAGAGATAGAAAGGCATCAAAAACTGCTGGATATATGGCCCATGGATGAGCCCTCGCTTTaGAAGTCCAAGGCCGGCCTG +
Preference number: 5 (lower is better)
Translates to: IRSREIERHQKLLDIWPMDEPSL*KSKAGL
Trigger: CAGGCCGGCCTTGGACTTCAAAAGCGAGGGCTCATC...CATGGGCCATATATCCAGCAGTTTTTGATGCCTTTCTATCTCTCTGCTCCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 90 bp CATCCATTTTCTTACTGGATGCAGGATGGGAAGCGGACCACAAACTaGTTGGAGATGGCAGGGAATTGTCTGTTTTGGTGGCGTTCAGTT +
Preference number: 5 (lower is better)
Translates to: HPFSYWMQDGKRTTN*LEMAGNCLFWWRSV
Trigger: AACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CAGACAAAGGAGAAACATTGGGCTCTGCACAGCCACAGCATGAAGTaGACTGGGGTAGCGATATACGTCATTCCCGTTTTTAGACACAAG +
Preference number: 5 (lower is better)
Translates to: QTKEKHWALHSHSMK*TGVAIYVIPVFRHK
Trigger: CTTGTGTCTAAAAACGGGAATGACGTATATCGCTACCCCAGTCCACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp CATTTTCTTACTGGATGCAGGATGGGAAGCGGACCACAAACTGCTTaGAGATGGCAGGGAATTGTCTGTTTTGGTGGCGTTCAGTTCAGA +
Preference number: 5 (lower is better)
Translates to: HFLTGCRMGSGPQTA*RWQGIVCFGGVQFR
Trigger: TCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCCGGAGGATCTTCTTCTaGAGGTTGTGCGAAGCCTTG +
Preference number: 5 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFRRIFF*RLCEAL
Trigger: CAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCG...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 90 bp AACCTCTTGCTTTCTAACTGGTCTGTCTTTGAGTCTTTGGACCTCTaGTTAGGAGGGGAGAATGGCCCGTTTTCCAAAGAGGTTATTCCC +
Preference number: 5 (lower is better)
Translates to: NLLLSNWSVFESLDL*LGGENGPFSKEVIP
Trigger: GGGAATAACCTCTTTGGAAAACGGGCCATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 90 bp ACGAGGCTCAAAATATACCCATCCATTTTCTTACTGGATGCAGGATaGGAAGCGGACCACAAACTGCTTGGAGATGGCAGGGAATTGTCT +
Preference number: 5 (lower is better)
Translates to: TRLKIYPSIFLLDAG*EADHKLLGDGRELS
Trigger: AGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATGGGTATATTTTGAGCCTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACGGACCACAAACTGCTaGGAGATGGCAGGGAATTGT +
Preference number: 5 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTRTTNC*EMAGNC
Trigger: ACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp GATCAAGGAGCGAGTTCACGGCTTAAAAATTTTATCCACGAACCTTGGAAACAATTCCTCAGAAGGCCCTaGGTAGGGTCAGCGTTCACA +
Preference number: 5 (lower is better)
Translates to: DQGASSRLKNFIHEPWKQFLRRP*VGSAFT
Trigger: TGTGAACGCTGACCCTACCAAGGGCCTTCTGAGGAA...TTGTTTCCAAGGTTCGTGGATAAAATTTTTAAGCCGTGAACTCGCTCCTTGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAATCTTCCCTCAGAGTGTaGCCCGTCAGACAAAGGAGA +
Preference number: 5 (lower is better)
Translates to: PLRDKQLYWLQIRSREIESSLRV*PVRQRR
Trigger: TCTCCTTTGTCTGACGGGCAACACTCTGAGGGAAGA...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp TTCTACCTACTCTACACAATTGTATGCAATGCCCCTCAACCGGAAAGCCCTTTCAGGGAATTGTCTGTTTaGGTGGCGTTCAGTTCAGAT +
Preference number: 5 (lower is better)
Translates to: FYLLYTIVCNAPQPESPFRELSV*VAFSSD
Trigger: ATCTGAACTGAACGCCACCAAAACAGACAATTCCCT...GAAAGGGCTTTCCGGTTGAGGGGCATTGCATACAATTGTGTAGAGTAGGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCCTAACTGGTCTGTCTTaGAGTCTTTGGACCTCTGCT +
Preference number: 5 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSLTGLS*SLWTSA
Trigger: AGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAG...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS TCA 90 bp ACATCCAGTCTCAGGTCACTTATCTGCTTGTCAAGTTCTTGCAACTaGTTCAACAAACCGGCATCTCTTCTCCTCAAACAATTCAACTGC +
Preference number: 5 (lower is better)
Translates to: TSSLRSLICLSSSCN*FNKPASLLLKQFNC
Trigger: GCAGTTGAATTGTTTGAGGAGAAGAGATGCCGGTTTGTTGAATCAGTTGCAAGAACTTGACAAGCAGATAAGTGACCTGAGACTGGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp CAGGTGGCAAAGGTTTTTGTGAATCCTTTTAAGGTCCTATCAGTCTCCCTATCCTGCGAAGCCTTGATTTaGACAAAGGTTTTTGTGGGA +
Preference number: 5 (lower is better)
Translates to: QVAKVFVNPFKVLSVSLSCEALI*TKVFVG
Trigger: TCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCA...GGATAGGGAGACTGATAGGACCTTAAAAGGATTCACAAAAACCTTTGCCACCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 90 bp CCCGTTTTTAGACACAAGATCACACTGGTATTTAGGATTCACATCTaGAATGACATCAAGGGAATTAAATTGTGGTGTGGAGGGGGAACT +
Preference number: 5 (lower is better)
Translates to: PVFRHKITLVFRIHI*NDIKGIKLWCGGGT
Trigger: AGTTCCCCCTCCACACCACAATTTAATTCCCTTGATGTCATTGCAGATGTGAATCCTAAATACCAGTGTGATCTTGTGTCTAAAAACGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS-3UTR CAA 90 bp CCAGTAAGGGTGAATTTCTTTGCACCAAAGGACCAACACTTTATCCCAAAGACACTGCTTGTCAAGTTCTaGCAACTGATTCAACAAACC +
Preference number: 5 (lower is better)
Translates to: PVRVNFFAPKDQHFIPKTLLVKF*QLIQQT
Trigger: GGTTTGTTGAATCAGTTGCAAGAACTTGACAAGCAG...TGTCTTTGGGATAAAGTGTTGGTCCTTTGGTGCAAAGAAATTCACCCTTACTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp CCTCTAAGGGACAAACAGTTGTATTGGCTACAAATTAGGAGCAGAGAGATAGAACTGGTTCTAGGTTTATaGGTCCTTACAGGGTGTGTT +
Preference number: 5 (lower is better)
Translates to: PLRDKQLYWLQIRSREIELVLGL*VLTGCV
Trigger: AACACACCCTGTAAGGACCAATAAACCTAGAACCAG...TTCTATCTCTCTGCTCCTAATTTGTAGCCAATACAACTGTTTGTCCCTTAGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS-3UTR CAA 90 bp GGACCAACACTTTATCCCAAAGACAAGCCCTCTAAGGGACAAACAGTTGTATTGAGGTTGTGCGAAGCCTaGATTTTGACAAAGGTTTTT +
Preference number: 5 (lower is better)
Translates to: GPTLYPKDKPSKGQTVVLRLCEA*ILTKVF
Trigger: AAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCT...CAATACAACTGTTTGTCCCTTAGAGGGCTTGTCTTTGGGATAAAGTGTTGGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS GCA 72 bp CCCGCCAGCGTGGCCTCCTGGCGCTCGCGGGTACGCTaGCGCTCCGTGTCCGCCTCGCCCCTCTCGCGCCAG +
Preference number: 6 (lower is better)
Translates to: PASVASWRSRVR*RSVSASPLSRQ
Trigger: CTGGCGCGAGAGGGGCGAGGCGGACACGGAGCGGCAGCGTACCCGCGAGCGCCAGGAGGCCACGCTGGCGGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp GCGCGTGCGCCCTGCTACCCGCCCGATGGCCGCCGGTaGCCAGGGCCCTACCGGGAAGGCCAGCGTCCTGCA +
Preference number: 6 (lower is better)
Translates to: ARAPCYPPDGRR*PGPYREGQRPA
Trigger: TGCAGGACGCTGGCCTTCCCGGTAGGGCCCTGGGCACCGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp CCGGAGCAGCGCAGCGCACCGCGCACCAGCAGCTCTTaGCGTTGCCGCAGGTACCCCAGCTCCGCCAGCCCC +
Preference number: 6 (lower is better)
Translates to: PEQRSAPRTSSS*RCRRYPSSASP
Trigger: GGGGCTGGCGGAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCGCGGTGCGCTGCGCTGCTCCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp CCCGGAGCAGCGCAGCGCACCGCGCACCAGCAGCTCTaGGCGTTGCCGCAGGTACCCCAGCTCCGCCAGCCC +
Preference number: 6 (lower is better)
Translates to: PGAAQRTAHQQL*ALPQVPQLRQP
Trigger: GGGCTGGCGGAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCGCGGTGCGCTGCGCTGCTCCGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp CAAGGTGGCGCTCCTTGCGACACCCGGGTTCCTGTGTaGACGGTGAGGCCTGGCGGCCGCCTGCTGCCCCGG +
Preference number: 6 (lower is better)
Translates to: QGGAPCDTRVPV*TVRPGGRLLPR
Trigger: CCGGGGCAGCAGGCGGCCGCCAGGCCTCACCGTGCACACAGGAACCCGGGTGTCGCAAGGAGCGCCACCTTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TTGTGCTTCGGTTTGGCCACCACGGGCTCCCGGCCATaGGCGTGCGCCCTGCTACCCGCCCGATGGCCGCCG +
Preference number: 6 (lower is better)
Translates to: LCFGLATTGSRP*ACALLPARWPP
Trigger: CGGCGGCCATCGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp GCGCTCCTTGCGACACCCGGGTTCCTGTGTGCACGGTaGGGCCTGGCGGCCGCCTGCTGCCCCGGAATGAAC +
Preference number: 6 (lower is better)
Translates to: ALLATPGFLCAR*GLAAACCPGMN
Trigger: GTTCATTCCGGGGCAGCAGGCGGCCGCCAGGCCTCACCGTGCACACAGGAACCCGGGTGTCGCAAGGAGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp TCCACCGCCGGTAGTCGGTTCGCTTGTGCTTCGGTTTaGCCACCACGGGCTCCCGGCCATGCGCGTGCGCCC +
Preference number: 6 (lower is better)
Translates to: STAGSRFACASV*PPRAPGHARAP
Trigger: GGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCGAACCGACTACCGGCGGTGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp TCCCTGACGGTGGGCAGGCCGTGTTCCATGGCTGCCTaGCCGCGGGCCTTCAAGGTGGCGCTCCTTGCGACA +
Preference number: 6 (lower is better)
Translates to: SLTVGRPCSMAA*PRAFKVALLAT
Trigger: TGTCGCAAGGAGCGCCACCTTGAAGGCCCGCGGCCAGGCAGCCATGGAACACGGCCTGCCCACCGTCAGGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp AGATGTTCTCTTCCAGGAACTTCTCCTCCAGGCGGCTaGGCTGCGCCGCGTCTCCCCGCAGCTCCCCGGAGC +
Preference number: 6 (lower is better)
Translates to: RCSLPGTSPPGG*AAPRLPAAPRS
Trigger: GCTCCGGGGAGCTGCGGGGAGACGCGGCGCAGCGCAGCCGCCTGGAGGAGAAGTTCCTGGAAGAGAACATCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TTTCTCCCTGACGGTGGGCAGGCCGTGTTCCATGGCTaGCTGGCCGCGGGCCTTCAAGGTGGCGCTCCTTGC +
Preference number: 6 (lower is better)
Translates to: FLPDGGQAVFHG*LAAGLQGGAPC
Trigger: GCAAGGAGCGCCACCTTGAAGGCCCGCGGCCAGGCAGCCATGGAACACGGCCTGCCCACCGTCAGGGAGAAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp TGGCGGCTTTGGGCACATGCTTGCTTTGGGGTTCCATaGCGGCGCCTGCCGAGCAGCTCTCCGGCAGAGCCA +
Preference number: 6 (lower is better)
Translates to: WRLWAHACFGVP*RRLPSSSPAEP
Trigger: TGGCTCTGCCGGAGAGCTGCTCGGCAGGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCCCAAAGCCGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AGTACTCGGAGTCGCTGGGCACGTAGGCATAGGGGCTaGCGTAAGGCAGGGCGACAGCCACCCGGTAGGCAG +
Preference number: 6 (lower is better)
Translates to: STRSRWARRHRG*RKAGRQPPGRQ
Trigger: CTGCCTACCGGGTGGCTGTCGCCCTGCCTTACGCCAGCCCCTATGCCTACGTGCCCAGCGACTCCGAGTACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AGAGCGACTCGCACTCCGCCGAGTACTCGGAGTCGCTaGGCACGTAGGCATAGGGGCTGGCGTAAGGCAGGG +
Preference number: 6 (lower is better)
Translates to: RATRTPPSTRSR*ARRHRGWRKAG
Trigger: CCCTGCCTTACGCCAGCCCCTATGCCTACGTGCCCAGCGACTCCGAGTACTCGGCGGAGTGCGAGTCGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp GGGCACATGCTTGCTTTGGGGTTCCATGGCGGCGCCTaGCGAGCAGCTCTCCGGCAGAGCCAACCTCTTGCT +
Preference number: 6 (lower is better)
Translates to: GHMLALGFHGGA*RAALRQSQPLA
Trigger: AGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp CTTGAGAGGCTGCCTTGGCGGCTTTGGGCACATGCTTaGTTTGGGGTTCCATGGCGGCGCCTGCCGAGCAGC +
Preference number: 6 (lower is better)
Translates to: LERLPWRLWAHA*FGVPWRRLPSS
Trigger: GCTGCTCGGCAGGCGCCGCCATGGAACCCCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAGCCTCTCAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp ATCCGAGTCGTCTGGGAAACGGCACTTCTTGCCTGCTaGCCGCGGTTTCTCCCTGACGGTGGGCAGGCCGTG +
Preference number: 6 (lower is better)
Translates to: IRVVWETALLAC*PRFLPDGGQAV
Trigger: CACGGCCTGCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp CTCTGCTCGTCCTCGCTGGTGTCCACCACCGTGGAGTaGAAGAGCGACTCGCACTCCGCCGAGTACTCGGAG +
Preference number: 6 (lower is better)
Translates to: LCSSSLVSTTVE*KSDSHSAEYSE
Trigger: CTCCGAGTACTCGGCGGAGTGCGAGTCGCTCTTCCACTCCACGGTGGTGGACACCAGCGAGGACGAGCAGAG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp GCCCTTCCTCGAGGCTTTGAGATGAGCCCTCGCTTTTaGAGTCCAAGGCCGGCCTGTCCAGCGCGGGCACAG +
Preference number: 6 (lower is better)
Translates to: ALPRGFEMSPRF*SPRPACPARAQ
Trigger: CTGTGCCCGCGCTGGACAGGCCGGCCTTGGACTTCAAAAGCGAGGGCTCATCTCAAAGCCTCGAGGAAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp GGCCCTCCGCAGGGCTTCTTCGTAGGAGACCTCGGCTaGCGATTTCCACCGCCGGTAGTCGGTTCGCTTGTG +
Preference number: 6 (lower is better)
Translates to: GPPQGFFVGDLG*RFPPPVVGSLV
Trigger: CACAAGCGAACCGACTACCGGCGGTGGAAATCGTCAGCCGAGGTCTCCTACGAAGAAGCCCTGCGGAGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TGTATCCGAGTCGTCTGGGAAACGGCACTTCTTGCCTaGTGCCCGCGGTTTCTCCCTGACGGTGGGCAGGCC +
Preference number: 6 (lower is better)
Translates to: CIRVVWETALLA*CPRFLPDGGQA
Trigger: GGCCTGCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TTAAACCCCCGCTCTCCTCTGAGTCGCTGGTGGTGGTaGTCTCGCCCACGAAGTCGCCTTCGCTCACGCTGG +
Preference number: 6 (lower is better)
Translates to: LNPRSPLSRWWW*SRPRSRLRSRW
Trigger: CCAGCGTGAGCGAAGGCGACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GGGACCAGATTAAACCCCCGCTCTCCTCTGAGTCGCTaGTGGTGGTGCTCTCGCCCACGAAGTCGCCTTCGC +
Preference number: 6 (lower is better)
Translates to: GTRLNPRSPLSR*WWCSRPRSRLR
Trigger: GCGAAGGCGACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAATCTGGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TCTTCTGCGACATCTTTTTCGGGAGCTGCAGGGCTTTaGTCTCTGCGGGGGCGACAGGGCCTCTGCCAGGAC +
Preference number: 6 (lower is better)
Translates to: SSATSFSGAAGL*SLRGRQGLCQD
Trigger: GTCCTGGCAGAGGCCCTGTCGCCCCCGCAGAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AAGTCCAAGGCCGGCCTGTCCAGCGCGGGCACAGCCTaGAGGCTGTTCTTCTGCGACATCTTTTTCGGGAGC +
Preference number: 6 (lower is better)
Translates to: KSKAGLSSAGTA*RLFFCDIFFGS
Trigger: GCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCCCGCGCTGGACAGGCCGGCCTTGGACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AGATTAAACCCCCGCTCTCCTCTGAGTCGCTGGTGGTaGTGCTCTCGCCCACGAAGTCGCCTTCGCTCACGC +
Preference number: 6 (lower is better)
Translates to: RLNPRSPLSRWW*CSRPRSRLRSR
Trigger: GCGTGAGCGAAGGCGACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAATCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp CTACCGGGAAGGCCAGCGTCCTGCAGCCCGCCACTGCGCCGGCCCTaGGCGGAGGTCTTCCTGAATTTCTTATTTGTATCCGAGTCGTCT +
Preference number: 6 (lower is better)
Translates to: LPGRPASCSPPLRRP*AEVFLNFLFVSESS
Trigger: AGACGACTCGGATACAAATAAGAAATTCAGGAAGACCTCCGCCAAGGGCCGGCGCAGTGGCGGGCTGCAGGACGCTGGCCTTCCCGGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp CCTTCATGGATTCCCCCAGCCCGGCTTGACACCTTGTaGGCTCTTGAGAGGCTGCCTTGGCGGCTTTGGGCA +
Preference number: 6 (lower is better)
Translates to: PSWIPPARLDTL*ALERLPWRLWA
Trigger: TGCCCAAAGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCGGGCTGGGGGAATCCATGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp CAGCCCGGCTTGACACCTTGTGAGCTCTTGAGAGGCTaGCTTGGCGGCTTTGGGCACATGCTTGCTTTGGGG +
Preference number: 6 (lower is better)
Translates to: QPGLTPCELLRG*LGGFGHMLALG
Trigger: CCCCAAAGCAAGCATGTGCCCAAAGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCGGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TGGAGGCTGTTCTTCTGCGACATCTTTTTCGGGAGCTaGAGGGCTTTGCTCTCTGCGGGGGCGACAGGGCCT +
Preference number: 6 (lower is better)
Translates to: WRLFFCDIFFGS*RALLSAGATGP
Trigger: AGGCCCTGTCGCCCCCGCAGAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp CTGTCCAGCGCGGGCACAGCCTGGAGGCTGTTCTTCTaGGACATCTTTTTCGGGAGCTGCAGGGCTTTGCTC +
Preference number: 6 (lower is better)
Translates to: LSSAGTAWRLFF*DIFFGSCRALL
Trigger: GAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCCCGCGCTGGACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AGCAGTTGGTGGTGTAGTTGCTCTGCTCGTCCTCGCTaGTGTCCACCACCGTGGAGTGGAAGAGCGACTCGC +
Preference number: 6 (lower is better)
Translates to: SSWWCSCSARPR*CPPPWSGRATR
Trigger: GCGAGTCGCTCTTCCACTCCACGGTGGTGGACACCAGCGAGGACGAGCAGAGCAACTACACCACCAACTGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp ACCAGATTAAACCCCCGCTCTCCTCTGAGTCGCTGGTaGTGGTGCTCTCGCCCACGAAGTCGCCTTCGCTCA +
Preference number: 6 (lower is better)
Translates to: TRLNPRSPLSRW*WCSRPRSRLRS
Trigger: TGAGCGAAGGCGACTTCGTGGGCGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAATCTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp GGATTCCCCCAGCCCGGCTTGACACCTTGTGAGCTCTaGAGAGGCTGCCTTGGCGGCTTTGGGCACATGCTT +
Preference number: 6 (lower is better)
Translates to: GFPQPGLTPCEL*RGCLGGFGHML
Trigger: AAGCATGTGCCCAAAGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCGGGCTGGGGGAATCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp TTCTTCTGCGACATCTTTTTCGGGAGCTGCAGGGCTTaGCTCTCTGCGGGGGCGACAGGGCCTCTGCCAGGA +
Preference number: 6 (lower is better)
Translates to: FFCDIFFGSCRA*LSAGATGPLPG
Trigger: TCCTGGCAGAGGCCCTGTCGCCCCCGCAGAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp AGGCCAGCGTCCTGCAGCCCGCCACTGCGCCGGCCCTaGGCGGAGGTCTTCCTGAATTTCTTATTTGTATCC +
Preference number: 6 (lower is better)
Translates to: RPASCSPPLRRP*AEVFLNFLFVS
Trigger: GGATACAAATAAGAAATTCAGGAAGACCTCCGCCAAGGGCCGGCGCAGTGGCGGGCTGCAGGACGCTGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp GTGGGACGGGTGTGGAGGTCTGGGGCCGTGACCGTTTaGATCGGGAGAGTCTGGACAAACTGGGACCAGATT +
Preference number: 6 (lower is better)
Translates to: VGRVWRSGAVTV*IGRVWTNWDQI
Trigger: AATCTGGTCCCAGTTTGTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp TGTGGGACGGGTGTGGAGGTCTGGGGCCGTGACCGTTaGAATCGGGAGAGTCTGGACAAACTGGGACCAGAT +
Preference number: 6 (lower is better)
Translates to: CGTGVEVWGRDR*NRESLDKLGPD
Trigger: ATCTGGTCCCAGTTTGTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp AGGTTTTTGTGGGACGGGTGTGGAGGTCTGGGGCCGTaGCCGTTTGAATCGGGAGAGTCTGGACAAACTGGG +
Preference number: 6 (lower is better)
Translates to: RFLWDGCGGLGP*PFESGESGQTG
Trigger: CCCAGTTTGTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCACAAAAACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp AACCGTCTGAGATGGTCAAGGCCGCCTCCAAGGGGCTaGAGAAGCAGGTGCTGGAATGGCAACTGGACAAAC +
Preference number: 6 (lower is better)
Translates to: NRLRWSRPPPRG*RSRCWNGNWTN
Trigger: GTTTGTCCAGTTGCCATTCCAGCACCTGCTTCTGCAGCCCCTTGGAGGCGGCCTTGACCATCTCAGACGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GCCGCCTCCAAGGGGCTGCAGAAGCAGGTGCTGGAATaGCAACTGGACAAACACTCACTGAACACGGAGTTG +
Preference number: 6 (lower is better)
Translates to: AASKGLQKQVLE*QLDKHSLNTEL
Trigger: CAACTCCGTGTTCAGTGAGTGTTTGTCCAGTTGCCATTCCAGCACCTGCTTCTGCAGCCCCTTGGAGGCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GATTCACATCTGCAGATTTGGGGCAACCGTCTGAGATaGTCAAGGCCGCCTCCAAGGGGCTGCAGAAGCAGG +
Preference number: 6 (lower is better)
Translates to: DSHLQIWGNRLR*SRPPPRGCRSR
Trigger: CCTGCTTCTGCAGCCCCTTGGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATGTGAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS CAA 72 bp TTATTTGTATCCGAGTCGTCTGGGAAACGGCACTTCTaGCCTGCTGCCCGCGGTTTCTCCCTGACGGTGGGC +
Preference number: 6 (lower is better)
Translates to: LFVSESSGKRHF*PAARGFSLTVG
Trigger: GCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp TCCATGGCGGCGCCTGCCGAGCAGCTCTCCGGCAGAGCCAACCTCTaGCTTTCTAACTGGTCTGTCTTTGAGTCTTTGGACCTCTGCTTA +
Preference number: 6 (lower is better)
Translates to: SMAAPAEQLSGRANL*LSNWSVFESLDLCL
Trigger: TAAGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCGCCGCCATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp CTGAATTTCTTATTTGTATCCGAGTCGTCTGGGAAACGGCACTTCTaGCCTGCTGCCCGCGGTTTCTCCCTGACGGTGGGCAGGCCGTGT +
Preference number: 6 (lower is better)
Translates to: LNFLFVSESSGKRHF*PAARGFSLTVGRPC
Trigger: ACACGGCCTGCCCACCGTCAGGGAGAAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAGAAATTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp CCATCCTATGAGATCTGCAGATTTGGGGCAACCGTCTaGGATGGTCAAGGCCGCCTCCAAGGGGCTGCAGAA +
Preference number: 6 (lower is better)
Translates to: PSYEICRFGATV*DGQGRLQGAAE
Trigger: TTCTGCAGCCCCTTGGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATCTCATAGGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS GCA 72 bp CATGGCTCCCAAGCCCCTCCTCTTCCCTCAGAGTGTTaGCCGTCAGACAAAGGAGAAACATTGGGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: HGSQAPPLPSEC*PSDKGETLGSA
Trigger: TGCAGAGCCCAATGTTTCTCCTTTGTCTGACGGGCAACACTCTGAGGGAAGAGGAGGGGCTTGGGAGCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp CGCCTGCCGAGCAGCTCTCCGGCAGAGCCAACCTCTTaGTTTCTAACTGGTCTGTCTTTGAGTCTTTGGACC +
Preference number: 6 (lower is better)
Translates to: RLPSSSPAEPTS*FLTGLSLSLWT
Trigger: GGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp GCGCCTGCCGAGCAGCTCTCCGGCAGAGCCAACCTCTaGCTTTCTAACTGGTCTGTCTTTGAGTCTTTGGAC +
Preference number: 6 (lower is better)
Translates to: APAEQLSGRANL*LSNWSVFESLD
Trigger: GTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp CCTCCTCTTCCCTCAGAGTGTTGCCCGTCAGACAAAGGAGAAACATaGGGCTCTGCACAGCCACAGCATGAAGTGGACTGGGGTAGCGAT +
Preference number: 6 (lower is better)
Translates to: PPLPSECCPSDKGET*GSAQPQHEVDWGSD
Trigger: ATCGCTACCCCAGTCCACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTCTGACGGGCAACACTCTGAGGGAAGAGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp TTTGACAAAGGTTTTTGTGGGACGGGTGTGGAGGTCTaGGGCCGTGACCGTTTGAATCGGGAGAGTCTGGAC +
Preference number: 6 (lower is better)
Translates to: FDKGFCGTGVEV*GRDRLNRESLD
Trigger: GTCCAGACTCTCCCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCACAAAAACCTTTGTCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp CGGAAACGGAGGATCTTCTTCTTGAGGTTGTGCGAAGCCTTGATTTaGACAAAGGTTTTTGTGGGACGGGTGTGGAGGTCTGGGGCCGTG +
Preference number: 6 (lower is better)
Translates to: RKRRIFFLRLCEALI*TKVFVGRVWRSGAV
Trigger: CACGGCCCCAGACCTCCACACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp CTTCACAGGGGCCGCCTTTACATTCCAACCATCCTATaGGATCTGCAGATTTGGGGCAACCGTCTGAGATGG +
Preference number: 6 (lower is better)
Translates to: LHRGRLYIPTIL*DLQIWGNRLRW
Trigger: CCATCTCAGACGGTTGCCCCAAATCTGCAGATCTCATAGGATGGTTGGAATGTAAAGGCGGCCCCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS CCA 72 bp ACTGGATGCAGGATGGGAAGCGGACCACAAACTGCTTaGAGATGGCAGGGAATTGTCTGTTTTGGTGGCGTT +
Preference number: 6 (lower is better)
Translates to: TGCRMGSGPQTA*RWQGIVCFGGV
Trigger: AACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp CTGTTTTGTATTCTTAAAGTTCACACTACTGCCCGGTaGGACGCCACTAGGGGCCCTGACACACACACTTCC +
Preference number: 6 (lower is better)
Translates to: LFCILKVHTTAR*DATRGPDTHTS
Trigger: GGAAGTGTGTGTGTCAGGGCCCCTAGTGGCGTCCCACCGGGCAGTAGTGTGAACTTTAAGAATACAAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp TACTGGATGCAGGATGGGAAGCGGACCACAAACTGCTaGGAGATGGCAGGGAATTGTCTGTTTTGGTGGCGT +
Preference number: 6 (lower is better)
Translates to: YWMQDGKRTTNC*EMAGNCLFWWR
Trigger: ACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp CCTTTACATTCCAACCATCCTATGAGATCTGCAGATTaGGGGCAACCGTCTGAGATGGTCAAGGCCGCCTCC +
Preference number: 6 (lower is better)
Translates to: PLHSNHPMRSAD*GQPSEMVKAAS
Trigger: GGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATCTCATAGGATGGTTGGAATGTAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150639.2
CDS CAA 90 bp GCAGGATGGGAAGCGGACCACAAACTGCTTGGAGATGGCAGGGAATaGTCTGTTTTGGTGGCGTTCAGTTCAGATCCAATGCAGATGTCG +
Preference number: 6 (lower is better)
Translates to: AGWEADHKLLGDGRE*SVLVAFSSDPMQMS
Trigger: CGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp CCAGAGCGGAAACGGAGGATCTTCTTCTTGAGGTTGTGCGAAGCCTaGATTTTGACAAAGGTTTTTGTGGGACGGGTGTGGAGGTCTGGG +
Preference number: 6 (lower is better)
Translates to: PERKRRIFFLRLCEA*ILTKVFVGRVWRSG
Trigger: CCCAGACCTCCACACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTTCCGCTCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp GGCAGAGCCAACCTCTTGCTTTCTAACTGGTCTGTCTTTGAGTCTTaGGACCTCTGCTTAGGAGGGGAGAATGGCCCGTTTTCCAAAGAG +
Preference number: 6 (lower is better)
Translates to: GRANLLLSNWSVFES*DLCLGGENGPFSKE
Trigger: CTCTTTGGAAAACGGGCCATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTTGGCTCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp TCTTACTGGATGCAGGATGGGAAGCGGACCACAAACTaGTTGGAGATGGCAGGGAATTGTCTGTTTTGGTGG +
Preference number: 6 (lower is better)
Translates to: SYWMQDGKRTTN*LEMAGNCLFWW
Trigger: CCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GGTCTTCCTGAATTTCTTATTTGTATCCGAGTCGTCTaGGAAACGGCACTTCTTGCCTGCTGCCCGCGGTTT +
Preference number: 6 (lower is better)
Translates to: GLPEFLICIRVV*ETALLACCPRF
Trigger: AAACCGCGGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAGAAATTCAGGAAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp AGATCACACTGGTATTTAGGATTCACATCTGCAGATTaGGGGCAACCGTCTGAGATGGTCAAGGCCGCCTCC +
Preference number: 6 (lower is better)
Translates to: RSHWYLGFTSAD*GQPSEMVKAAS
Trigger: GGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATGTGAATCCTAAATACCAGTGTGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061273.12
CDS CAA 90 bp CCATTTTCTTACTGGATGCAGGATGGGAAGCGGACCACAAACTGCTaGGAGATGGCAGGGAATTGTCTGTTTTGGTGGCGTTCAGTTCAG +
Preference number: 6 (lower is better)
Translates to: PFSYWMQDGKRTTNC*EMAGNCLFWWRSVQ
Trigger: CTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GAGAAACATTGGGCTCTGCACAGCCACAGCATGAAGTaGACTGGGGTAGCGATATACGTCATTCCCGTTTTT +
Preference number: 6 (lower is better)
Translates to: EKHWALHSHSMK*TGVAIYVIPVF
Trigger: AAAAACGGGAATGACGTATATCGCTACCCCAGTCCACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AACTGCTTGGAGATGGCAGGGAATTGTCTGTTTTGGTaGCGTTCAGTTCAGATCCAATGCAGATGTCGCTGG +
Preference number: 6 (lower is better)
Translates to: NCLEMAGNCLFW*RSVQIQCRCRW
Trigger: CCAGCGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp GAAGCGGACCACAAACTGCTTGGAGATGGCAGGGAATaGTCTGTTTTGGTGGCGTTCAGTTCAGATCCAATG +
Preference number: 6 (lower is better)
Translates to: EADHKLLGDGRE*SVLVAFSSDPM
Trigger: CATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp ACAAACTGCTTGGAGATGGCAGGGAATTGTCTGTTTTaGTGGCGTTCAGTTCAGATCCAATGCAGATGTCGC +
Preference number: 6 (lower is better)
Translates to: TNCLEMAGNCLF*WRSVQIQCRCR
Trigger: GCGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp GCACGAGGCTCAAAATATACCCATCCATTTTCTTACTaGATGCAGGATGGGAAGCGGACCACAAACTGCTTG +
Preference number: 6 (lower is better)
Translates to: ARGSKYTHPFSY*MQDGKRTTNCL
Trigger: CAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATGGGTATATTTTGAGCCTCGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp CACAAACTGCTTGGAGATGGCAGGGAATTGTCTGTTTaGGTGGCGTTCAGTTCAGATCCAATGCAGATGTCG +
Preference number: 6 (lower is better)
Translates to: HKLLGDGRELSV*VAFSSDPMQMS
Trigger: CGACATCTGCATTGGATCTGAACTGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp AACCTCTTGCTTTCTAACTGGTCTGTCTTTGAGTCTTaGGACCTCTGCTTAGGAGGGGAGAATGGCCCGTTT +
Preference number: 6 (lower is better)
Translates to: NLLLSNWSVFES*DLCLGGENGPF
Trigger: AAACGGGCCATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTCAAAGACAGACCAGTTAGAAAGCAAGAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp AGAAGGCCCTTGGTAGGGTCAGCGTTCACACTGGTTCTAGGTTTATaGGTCCTTACAGGGTGTGTTTTCTTCTGCACGAGGCTCAAAATA +
Preference number: 6 (lower is better)
Translates to: RRPLVGSAFTLVLGL*VLTGCVFFCTRLKI
Trigger: TATTTTGAGCCTCGTGCAGAAGAAAACACACCCTGTAAGGACCAATAAACCTAGAACCAGTGTGAACGCTGACCCTACCAAGGGCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp AGTTTCAAAGAGCCAGAGCGGAAACGGAGGATCTTCTTCTTGAGGTaGTGCGAAGCCTTGATTTTGACAAAGGTTTTTGTGGGACGGGTG +
Preference number: 6 (lower is better)
Translates to: SFKEPERKRRIFFLR*CEALILTKVFVGRV
Trigger: CACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTTCCGCTCTGGCTCTTTGAAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp AACAAACCGGCATCTCTTCTCCTCAAACAATTCAACTaGCTTCGCAGCAGCAAGATGTTCTCTTCCAGGAAC +
Preference number: 6 (lower is better)
Translates to: NKPASLLLKQFN*LRSSKMFSSRN
Trigger: GTTCCTGGAAGAGAACATCTTGCTGCTGCGAAGGCAGTTGAATTGTTTGAGGAGAAGAGATGCCGGTTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS GCA 72 bp GAGGCTCAAAATATACCCATCCATTTTCTTACTGGATaGAGGATGGGAAGCGGACCACAAACTGCTTGGAGA +
Preference number: 6 (lower is better)
Translates to: EAQNIPIHFLTG*RMGSGPQTAWR
Trigger: TCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATGGGTATATTTTGAGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CCA 72 bp AAAATATACCCATCCATTTTCTTACTGGATGCAGGATaGGAAGCGGACCACAAACTGCTTGGAGATGGCAGG +
Preference number: 6 (lower is better)
Translates to: KIYPSIFLLDAG*EADHKLLGDGR
Trigger: CCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATCCAGTAAGAAAATGGATGGGTATATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp AAACGGAGGATCTTCTTCTTGAGGTTGTGCGAAGCCTaGATTTTGACAAAGGTTTTTGTGGGACGGGTGTGG +
Preference number: 6 (lower is better)
Translates to: KRRIFFLRLCEA*ILTKVFVGRVW
Trigger: CCACACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 90 bp GTCATCAGTTTCAAAGAGCCAGAGCGGAAACGGAGGATCTTCTTCTaGAGGTTGTGCGAAGCCTTGATTTTGACAAAGGTTTTTGTGGGA +
Preference number: 6 (lower is better)
Translates to: VISFKEPERKRRIFF*RLCEALILTKVFVG
Trigger: TCCCACAAAAACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTTCCGCTCTGGCTCTTTGAAACTGATGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS CAA 72 bp TTCAAAGAGCCAGAGCGGAAACGGAGGATCTTCTTCTaGAGGTTGTGCGAAGCCTTGATTTTGACAAAGGTT +
Preference number: 6 (lower is better)
Translates to: FKEPERKRRIFF*RLCEALILTKV
Trigger: AACCTTTGTCAAAATCAAGGCTTCGCACAACCTCAAGAAGAAGATCCTCCGTTTCCGCTCTGGCTCTTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2
CDS TCA 72 bp CTCAGGTCACTTATCTGCTTGTCAAGTTCTTGCAACTaGTTCAACAAACCGGCATCTCTTCTCCTCAAACAA +
Preference number: 6 (lower is better)
Translates to: LRSLICLSSSCN*FNKPASLLLKQ
Trigger: TTGTTTGAGGAGAAGAGATGCCGGTTTGTTGAATCAGTTGCAAGAACTTGACAAGCAGATAAGTGACCTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061273.12
ENSMUST00000150639.2