RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DAAM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034574

Ensembl transcript IDs: ENSMUST00000085299.4, ENSMUST00000221317.2, ENSMUST00000223272.2

Found 359 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTCCTCCTCGCCACGTCTCCATCAGCACCGCAGCCAGGATGCTTaGAGCCTGTGGTTAGCGCGGGGCTGGGAGAGTCAGCTCTGCTTT +
Preference number: 1 (lower is better)
Translates to: HSSSPRLHQHRSQDA*SLWLARGWESQLCF
Trigger: AAAGCAGAGCTGACTCTCCCAGCCCCGCGCTAACCACAGGCTGCAAGCATCCTGGCTGCGGTGCTGATGGAGACGTGGCGAGGAGGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR GCA 90 bp GGCCTACATGGATGTGAGGATGATTCTAAGAGGGGCAAGGGGACATaGGACACAGACTTGCTCTCTGTTGTGAGTCTCTCTCCACAGTTC +
Preference number: 1 (lower is better)
Translates to: GLHGCEDDSKRGKGT*DTDLLSVVSLSPQF
Trigger: GAACTGTGGAGAGAGACTCACAACAGAGAGCAAGTCTGTGTCGCATGTCCCCTTGCCCCTCTTAGAATCATCCTCACATCCATGTAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR GCA 90 bp GGGCACGGTGTTCAGGGAAAGAAAATGAATCCCACTCAATATGAATaGATACGCAAAGAGTTTCTGGGTGCACACATTAACATGAACTTT +
Preference number: 1 (lower is better)
Translates to: GHGVQGKKMNPTQYE*IRKEFLGAHINMNF
Trigger: AAAGTTCATGTTAATGTGTGCACCCAGAAACTCTTTGCGTATGCATTCATATTGAGTGGGATTCATTTTCTTTCCCTGAACACCGTGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGCCTGTGAGGAAAACTaGAGACGCCCCAGAAGCACC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTACEEN*RRPRST
Trigger: GGTGCTTCTGGGGCGTCTTCAGTTTTCCTCACAGGC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCTTTATCCTGGGACATaGAGCACGGCCTGTGAGGAA +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTLYPGT*STACEE
Trigger: TTCCTCACAGGCCGTGCTGCATGTCCCAGGATAAAG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTaGCTTACCACTACAGCTCTACTATGCCTGGTACATAGTAAGTGC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSV*LTTTALLCLVHSKC
Trigger: GCACTTACTATGTACCAGGCATAGTAGAGCTGTAGTGGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 90 bp TGGTATTCTACCGTCCCTGAAAACACCGTGGAGAATGTGAACTCCTaGGTGGGCAGGGACTCTGTCTTGCTTACCACTACAGCTCTACTA +
Preference number: 2 (lower is better)
Translates to: WYSTVPENTVENVNS*VGRDSVLLTTTALL
Trigger: TAGTAGAGCTGTAGTGGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTTTTCAGGGACGGTAGAATACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCTCCATTTCTACCAGTaGAAATCGTCTCACTACACC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTLHFYQ*KSSHYT
Trigger: GGTGTAGTGAGACGATTTTCACTGGTAGAAATGGAG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCACTACAGCTCTACTATaGCTGGTACATAGTAAGTGC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTTTALL*LVHSKC
Trigger: GCACTTACTATGTACCAGGCATAGTAGAGCTGTAGT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTGTAATGGAAAGTTCTaGTCACCCCAAAAGGGCTGC +
Preference number: 2 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWCNGKF*SPQKGC
Trigger: GCAGCCCTTTTGGGGTGACCAGAACTTTCCATTACA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTCAATGAGGAAGCTCTaGCAATTCTGGTTCTTAACC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTSMRKL*QFWFLT
Trigger: GGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCACACACAATTTAAAATaGCAACACGTAACAGCGATC +
Preference number: 2 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTTHNLK*QHVTAI
Trigger: GATCGCTGTTACGTGTTGTCATTTTAAATTGTGTGT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACTACAGCTCTACTATaGCTGGTACATAGTAAGTGC +
Preference number: 2 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTTALL*LVHSKC
Trigger: GCACTTACTATGTACCAGGCATAGTAGAGCTGTAGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAAATTGCCATTGTTTTaGATCGCAAGGCAGTGTAAT +
Preference number: 2 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLKLPLF*IARQCN
Trigger: ATTACACTGCCTTGCGATCCAAAACAATGGCAATTT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCAATGAGGAAGCTCTaGCAATTCTGGTTCTTAACC +
Preference number: 2 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSMRKL*QFWFLT
Trigger: GGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGAGGAGAGAAGAAATTaGCATTGTTTTGGATCGCAA +
Preference number: 2 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWEERRN*HCFGSQ
Trigger: TTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGCAGGGACTCTGTCTTaGTTACCACTACAGCTCTAC +
Preference number: 2 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTAGTLS*LPLQLY
Trigger: GTAGAGCTGTAGTGGTAAGCAAGACAGAGTCCCTGC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTGTAATGGAAAGTTCTaGTCACCCCAAAAGGGCTGC +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQCNGKF*SPQKGC
Trigger: GCAGCCCTTTTGGGGTGACCAGAACTTTCCATTACA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCCACTAAGTCTTGGATaGGAAATCTTATTTGTCAGG +
Preference number: 2 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWPLSLG*EILFVR
Trigger: CCTGACAAATAAGATTTCCCATCCAAGACTTAGTGG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCTCCATTTCTACCAGTaGAAATCGTCTCACTACACC +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQLHFYQ*KSSHYT
Trigger: GGTGTAGTGAGACGATTTTCACTGGTAGAAATGGAG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATGTAATGGAAAGTTCTaGTCACCCCAAAAGGGCTGC +
Preference number: 2 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTCNGKF*SPQKGC
Trigger: GCAGCCCTTTTGGGGTGACCAGAACTTTCCATTACA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 90 bp TTACACACACACATTCACACCTTCACTCACAGAGGAGAGAAGAAATaGCCATTGTTTTGGATCGCAAGGCAGTGTAATGGAAAGTTCTGG +
Preference number: 2 (lower is better)
Translates to: LHTHIHTFTHRGEKK*PLFWIARQCNGKFW
Trigger: CCAGAACTTTCCATTACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGAAGGTGTGAATGTGTGTGTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCTCCATTTCTACCAGTaGAAATCGTCTCACTACACC +
Preference number: 2 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLHFYQ*KSSHYT
Trigger: GGTGTAGTGAGACGATTTTCACTGGTAGAAATGGAG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGAGGAGAGAAGAAATTaGCATTGTTTTGGATCGCAA +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQEERRN*HCFGSQ
Trigger: TTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCCCACTCAATATGAATaGATACGCAAAGAGTTTCTG +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQPTQYE*IRKEFL
Trigger: CAGAAACTCTTTGCGTATGCATTCATATTGAGTGGG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCCCACTCAATATGAATaGATACGCAAAGAGTTTCTG +
Preference number: 2 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHPTQYE*IRKEFL
Trigger: CAGAAACTCTTTGCGTATGCATTCATATTGAGTGGG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCATGATATGAATGTGTaGAAGATGTTCTCAACAGAC +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQHDMNV*KMFSTD
Trigger: GTCTGTTGAGAACATCTTGCACACATTCATATCATG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGAAATTGCCATTGTTTTaGATCGCAAGGCAGTGTAAT +
Preference number: 2 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQKLPLF*IARQCN
Trigger: ATTACACTGCCTTGCGATCCAAAACAATGGCAATTT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR GCA 72 bp CTCCTCGCCACGTCTCCATCAGCACCGCAGCCAGGATaGTTGCAGCCTGTGGTTAGCGCGGGGCTGGGAGAG +
Preference number: 3 (lower is better)
Translates to: LLATSPSAPQPG*LQPVVSAGLGE
Trigger: CTCTCCCAGCCCCGCGCTAACCACAGGCTGCAAGCATCCTGGCTGCGGTGCTGATGGAGACGTGGCGAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR TCA 72 bp GCAAGGGGACATGCGACACAGACTTGCTCTCTGTTGTaGGTCTCTCTCCACAGTTCCAAAACTGAGCTGGAC +
Preference number: 3 (lower is better)
Translates to: ARGHATQTCSLL*VSLHSSKTELD
Trigger: GTCCAGCTCAGTTTTGGAACTGTGGAGAGAGACTCACAACAGAGAGCAAGTCTGTGTCGCATGTCCCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR TCA 72 bp GGTATTCTACCGTCCCTGAAAACACCGTGGAGAATGTaGACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTA +
Preference number: 3 (lower is better)
Translates to: GILPSLKTPWRM*TPWWAGTLSCL
Trigger: TAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTTTTCAGGGACGGTAGAATACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR GCA 72 bp GGATGTGAGGATGATTCTAAGAGGGGCAAGGGGACATaGGACACAGACTTGCTCTCTGTTGTGAGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: GCEDDSKRGKGT*DTDLLSVVSLS
Trigger: AGAGAGACTCACAACAGAGAGCAAGTCTGTGTCGCATGTCCCCTTGCCCCTCTTAGAATCATCCTCACATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGAGAAGAAATTGCCATaGTTTTGGATCGCAAGGCAG +
Preference number: 3 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLEKKLP*FWIARQ
Trigger: CTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGAGAAGAAATTGCCATaGTTTTGGATCGCAAGGCAG +
Preference number: 3 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTEKKLP*FWIARQ
Trigger: CTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGAGAATGTGAACTCCTaGGTGGGCAGGGACTCTGTC +
Preference number: 3 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTENVNS*VGRDSV
Trigger: GACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR TCA 72 bp GCTCACCCGTCTGTTTTCCAACTCCATTTCTACCAGTaGAAATCGTCTCACTACACCAACCTTGGGAACCAT +
Preference number: 3 (lower is better)
Translates to: AHPSVFQLHFYQ*KSSHYTNLGNH
Trigger: ATGGTTCCCAAGGTTGGTGTAGTGAGACGATTTTCACTGGTAGAAATGGAGTTGGAAAACAGACGGGTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGATTCTCTACTGCTCATaGTGTTTTATCTCCCTGAGA +
Preference number: 3 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWILYCS*CFISLR
Trigger: TCTCAGGGAGATAAAACACAATGAGCAGTAGAGAAT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATATTCTCTACTGCTCATaGTGTTTTATCTCCCTGAGA +
Preference number: 3 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHILYCS*CFISLR
Trigger: TCTCAGGGAGATAAAACACAATGAGCAGTAGAGAAT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAATTCTCTACTGCTCATaGTGTTTTATCTCCCTGAGA +
Preference number: 3 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTILYCS*CFISLR
Trigger: TCTCAGGGAGATAAAACACAATGAGCAGTAGAGAAT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CCA 72 bp TTTTTAAATAGTACGGTTCCTGTCTACTATGCACATTaGTATTCTACCGTCCCTGAAAACACCGTGGAGAAT +
Preference number: 3 (lower is better)
Translates to: FLNSTVPVYYAH*YSTVPENTVEN
Trigger: ATTCTCCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTATTTAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR TCA 72 bp ATTGTACAGGTAGCGTCACTGACACACAATTTAAAATaGCAACACGTAACAGCGATCACTTCAAATATTCTT +
Preference number: 3 (lower is better)
Translates to: IVQVASLTHNLK*QHVTAITSNIL
Trigger: AAGAATATTTGAAGTGATCGCTGTTACGTGTTGTCATTTTAAATTGTGTGTCAGTGACGCTACCTGTACAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR GCA 72 bp TTCACAGCTTTTACACAGCACAGATTCCTCGCCATCTaGACTAAACATTATAGTTCATACAGATTAGTTTTT +
Preference number: 3 (lower is better)
Translates to: FTAFTQHRFLAI*TKHYSSYRLVF
Trigger: AAAAACTAATCTGTATGAACTATAATGTTTAGTGCAGATGGCGAGGAATCTGTGCTGTGTAAAAGCTGTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp CTCGCCACGTCTCCATCAGCACCGCAGCCAGGATGCTaGCAGCCTGTGGTTAGCGCGGGGCTGGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: LATSPSAPQPGC*QPVVSAGLGES
Trigger: TGACTCTCCCAGCCCCGCGCTAACCACAGGCTGCAAGCATCCTGGCTGCGGTGCTGATGGAGACGTGGCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCCAGGGGCTCCGGGTaGGGGTCCTCCTGGGACTGC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSRGSG*GSSWDC
Trigger: GCAGTCCCAGGAGGACCCTCACCCGGAGCCCCTGGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCCAGGGGCTCCGGGTaGGGGTCCTCCTGGGACTGC +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSRGSG*GSSWDC
Trigger: GCAGTCCCAGGAGGACCCTCACCCGGAGCCCCTGGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACGCTGCTCTTTGAGCTaGGCTTCCAGGCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLRCSLS*ASRRAR
Trigger: GCGGGCTCGCCTGGAAGCTCAGCTCAAAGAGCAGCG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGGGTCCTCCTGGGACTaGTGCACAGACGGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLGSSWD*CTDGPP
Trigger: AGGAGGGCCGTCTGTGCAGCAGTCCCAGGAGGACCC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGGGTCCTCCTGGGACTaGTGCACAGACGGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTGSSWD*CTDGPP
Trigger: AGGAGGGCCGTCTGTGCAGCAGTCCCAGGAGGACCC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAGGAAGTGCTCCACCTaGAAGGAGTGGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLRKCST*KEWGWW
Trigger: CCACCACCCCCACTCCTTTCAGGTGGAGCACTTCCT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCAGGAAGTGCTCCACCTaGAAGGAGTGGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTRKCST*KEWGWW
Trigger: CCACCACCCCCACTCCTTTCAGGTGGAGCACTTCCT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCTCCCGCTGCTCTTTaGGCTGAGCTTCCAGGCGAG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSPAAL*AELPGE
Trigger: CTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACCACCTCCAGGAGCTaGTTGAGGGCGCGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTTSRS*LRARLL
Trigger: CAGGAGCCGCGCCCTCAAGCAGCTCCTGGAGGTGGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp TCACTGATGCGGGTGGCGGTGCCTGGCCCACAACCGTaGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTA +
Preference number: 4 (lower is better)
Translates to: SLMRVAVPGPQP*SSPVCFPTPFL
Trigger: TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCACCGCCACCCGCATCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGGTGCAGAATGGACATaGAGTGGGGGTAGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTGAEWT*SGGRLR
Trigger: GCGAAGCCTACCCCCACTTCATGTCCATTCTGCACC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCTGCGCCGTGAGGTCTaGCACCTGCTGCTTAACTTG +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTLRREV*HLLLNL
Trigger: CAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCCACTCCGGCTCCCTaGCTCAGCACTGCATTGATG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSTPAP*LSTALM
Trigger: CATCAATGCAGTGCTGAGCCAGGGAGCCGGAGTGGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCTCCCGCTGCTCTTTaGGCTGAGCTTCCAGGCGAG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSPAAL*AELPGE
Trigger: CTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCCCGAAGAACTCATCTaGCTGGATCTTGCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTPEELI*LDLASL
Trigger: GAGGCTGGCAAGATCCAGCCAGATGAGTTCTTCGGG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGGGTCCTCCTGGGACTaGTGCACAGACGGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVGSSWD*CTDGPP
Trigger: AGGAGGGCCGTCTGTGCAGCAGTCCCAGGAGGACCC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACATCTGGCTGGATCTTaGCAGCCTCTTCCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLHLAGS*QPLPQS
Trigger: ACTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCATCTGGCTGGATCTTaGCAGCCTCTTCCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTHLAGS*QPLPQS
Trigger: ACTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCCACTCCGGCTCCCTaGCTCAGCACTGCATTGATG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSTPAP*LSTALM
Trigger: CATCAATGCAGTGCTGAGCCAGGGAGCCGGAGTGGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGGAAGCGGTCAGCCTTaGCCATCCGATCCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWGSGQP*PSDPAH
Trigger: ATGAGCTGGATCGGATGGCCAAGGCTGACCGCTTCC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGCCAGGGTGATGAACTaGCTGACAACAGACACGAAC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLARVMN*LTTDTN
Trigger: GTTCGTGTCTGTTGTCAGCCAGTTCATCACCCTGGC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp ACCGTCCCTGAAAACACCGTGGAGAATGTGAACTCCTaGGTGGGCAGGGACTCTGTCTTGCTTACCACTACA +
Preference number: 4 (lower is better)
Translates to: TVPENTVENVNS*VGRDSVLLTTT
Trigger: TGTAGTGGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTTTTCAGGGACGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCAACAGCAGCCAGTACTaGACTGTGTTACCACTCCTC +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTNSSQY*TVLPLL
Trigger: GAGGAGTGGTAACACAGTTCAGTACTGGCTGCTGTT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGCAACTTGGACCAGTTaGAGGATTTCAGGGCATTGG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLATWTS*RISGHW
Trigger: CCAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGCAACTTGGACCAGTTaGAGGATTTCAGGGCATTGG +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTATWTS*RISGHW
Trigger: CCAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCGCTGCTCTTTGAGCTaGGCTTCCAGGCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHRCSLS*ASRRAR
Trigger: GCGGGCTCGCCTGGAAGCTCAGCTCAAAGAGCAGCG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAACCACCTCCAGGAGCTaGTTGAGGGCGCGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTTTSRS*LRARLL
Trigger: CAGGAGCCGCGCCCTCAAGCAGCTCCTGGAGGTGGT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAAGAACTCATCTGGCTaGATCTTGCCAGCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLKNSSG*ILPASS
Trigger: GGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCCCGAAGAACTCATCTaGCTGGATCTTGCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWPEELI*LDLASL
Trigger: GAGGCTGGCAAGATCCAGCCAGATGAGTTCTTCGGG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCTTCACTGCTCTCCTTaGCCTTCCTCACCTTCCGCT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLHCSP*PSSPSA
Trigger: AGCGGAAGGTGAGGAAGGCCAAGGAGAGCAGTGAAG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACCCTGTGTTTGTCTGTaGGGTCAAGTTCATCCACAA +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLPCVCL*GQVHPQ
Trigger: TTGTGGATGAACTTGACCTCACAGACAAACACAGGG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGGCCATCCAAGTCGATaGATCTGGTTACAAACCTCA +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLGHPSR*IWLQTS
Trigger: TGAGGTTTGTAACCAGATTCATCGACTTGGATGGCC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGTCAGCTCAAACATCTaGGTGGCGCTTTTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTVSSNI*VALFVS
Trigger: AGACACAAAAAGCGCCACTCAGATGTTTGAGCTGAC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAGGATGTTGCAATTCTaGGCTCTCCGACCATCAATC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLRMLQF*ALRPSI
Trigger: GATTGATGGTCGGAGAGCTCAGAATTGCAACATCCT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATCTCCCGCTGCTCTTTaGGCTGAGCTTCCAGGCGAG +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVSPAAL*AELPGE
Trigger: CTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTTCTCTGCTGGAAGTaGAAACATGGCTTCCCTGTG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLFLCWK*KHGFPV
Trigger: CACAGGGAAGCCATGTTTGCACTTCCAGCAGAGAAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTCCCTGGCTCAGCACTaGATTGATGAAGGACATGAT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTSLAQH*IDEGHD
Trigger: ATCATGTCCTTCATCAATGCAGTGCTGAGCCAGGGA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCCCTGGCTCAGCACTaGATTGATGAAGGACATGAT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSLAQH*IDEGHD
Trigger: ATCATGTCCTTCATCAATGCAGTGCTGAGCCAGGGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCATCTGGAGGCAATGGTaGAGAATGGACATGAAGTGG +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTIWRQW*RMDMKW
Trigger: CCACTTCATGTCCATTCTGCACCATTGCCTCCAGAT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAATCTGGAGGCAATGGTaGAGAATGGACATGAAGTGG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLIWRQW*RMDMKW
Trigger: CCACTTCATGTCCATTCTGCACCATTGCCTCCAGAT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAACCTGCTGCTTAACTTaGTTGTGCTCAGTTGTCTCC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLTCCLT*LCSVVS
Trigger: GGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTTGGGCTTCACTTCTaGCACACGCTCTGCAAACTT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLFGLHF*HTLCKL
Trigger: AAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAGGGCATTGGTGGGCTaGGGAATATTCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLRALVG*GIFFFL
Trigger: CAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCAGGATTTCAGGGCATTaGTGGGCTGGGGAATATTCT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTRISGH*WAGEYS
Trigger: AGAATATTCCCCAGCCCACCAATGCCCTGAAATCCT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCTTGTCTCCAGGCTGTaGGGGCTGAGACTTCTGATA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLVSRL*GLRLLI
Trigger: TATCAGAAGTCTCAGCCCCCACAGCCTGGAGACAAG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAATTAAGTTTTGTGATTaGTCGCTCCCGGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLIKFCD*SLPAAV
Trigger: GACAGCAGCCGGGAGCGACCAATCACAAAACTTAAT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp GATTCTAAGAGGGGCAAGGGGACATGCGACACAGACTaGCTCTCTGTTGTGAGTCTCTCTCCACAGTTCCAA +
Preference number: 4 (lower is better)
Translates to: DSKRGKGTCDTD*LSVVSLSPQFQ
Trigger: TTGGAACTGTGGAGAGAGACTCACAACAGAGAGCAAGTCTGTGTCGCATGTCCCCTTGCCCCTCTTAGAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGCCGGCTCCATTGTCTaGAGTGCAAAGTTGCTATCA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWAGSIV*SAKLLS
Trigger: TGATAGCAACTTTGCACTTCAGACAATGGAGCCGGC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCCTTTATACAGCCAATaGGGGAGGTGTGTATCCGAG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWPLYSQ*GRCVSE
Trigger: CTCGGATACACACCTCCCTCATTGGCTGTATAAAGG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGCAACTTGGACCAGTTaGAGGATTTCAGGGCATTGG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWATWTS*RISGHW
Trigger: CCAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAACTCTTCGCTTAGGTTaGGGACTTTGGGGTACTTAT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLTLRLG*GLWGTY
Trigger: ATAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCACTCTTCGCTTAGGTTaGGGACTTTGGGGTACTTAT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTTLRLG*GLWGTY
Trigger: ATAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAAGATCTTCAACATCTaGGAAGCTGAAGCTAGCCAG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLKIFNI*EAEASQ
Trigger: CTGGCTAGCTTCAGCTTCTCAGATGTTGAAGATCTT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGGGCTTGGTTCTCAGTaGTGTCTTCAGACTCTCGAT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWGLGSQ*CLQTLD
Trigger: ATCGAGAGTCTGAAGACAGCACTGAGAACCAAGCCC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGTGGAGTCGGGATCCTaGCCTTTGTCATTCTGGATA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWVESGS*PLSFWI
Trigger: TATCCAGAATGACAAAGGGCAGGATCCCGACTCCAC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCTGCGCCGTGAGGTCTaGCACCTGCTGCTTAACTTG +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQLRREV*HLLLNL
Trigger: CAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGGCATCTGGAGGCAATaGTGCAGAATGGACATGAAG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWGIWRQ*CRMDMK
Trigger: CTTCATGTCCATTCTGCACCATTGCCTCCAGATGCC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCATTTCAGGGCATTGGTaGGCTGGGGAATATTCTTCT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTISGHW*AGEYSS
Trigger: AGAAGAATATTCCCCAGCCCACCAATGCCCTGAAAT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGGAAGCGGTCAGCCTTaGCCATCCGATCCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVGSGQP*PSDPAH
Trigger: ATGAGCTGGATCGGATGGCCAAGGCTGACCGCTTCC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGAAGAACTCATCTGGCTaGATCTTGCCAGCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWKNSSG*ILPASS
Trigger: GGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp GAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTaGCTTACCACTACAGCTCTACTATGCCTGGTACAT +
Preference number: 4 (lower is better)
Translates to: ENVNSLVGRDSV*LTTTALLCLVH
Trigger: ATGTACCAGGCATAGTAGAGCTGTAGTGGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGGTGCAGAATGGACATaGAGTGGGGGTAGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHGAEWT*SGGRLR
Trigger: GCGAAGCCTACCCCCACTTCATGTCCATTCTGCACC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGTTTCCGGTTCCGTTTaGGTTTTGAAAGGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTVSGSV*VLKGLC
Trigger: ACAAAGACCTTTCAAAACTCAAACGGAACCGGAAAC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACCTGGTCCTTTTTCTTaGTACAGTATATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLPGPFS*YSISAT
Trigger: AGTGGCAGATATACTGTAGCAAGAAAAAGGACCAGG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCTCATCTTCTCTGCCTaGTCTTTCCATTGCTTAACT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTLIFSA*SFHCLT
Trigger: AGTTAAGCAATGGAAAGAGCAGGCAGAGAAGATGAG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACTCATCTTCTCTGCCTaGTCTTTCCATTGCTTAACT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLIFSA*SFHCLT
Trigger: AGTTAAGCAATGGAAAGAGCAGGCAGAGAAGATGAG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATGCTTAACTTGCTTGTaGTCAGTTGTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLCLTCL*SVVSFS
Trigger: GGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTGCTTAACTTGCTTGTaGTCAGTTGTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTCLTCL*SVVSFS
Trigger: GGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACTGCGCCGTGAGGTCTaGCACCTGCTGCTTAACTTG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTLRREV*HLLLNL
Trigger: CAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCATGTTTACTTTCGCTaGTTGAGGAATATCCCGCAA +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTHVYFR*LRNIPQ
Trigger: TTGCGGGATATTCCTCAAGCAGCGAAAGTAAACATG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACCCAAAGTGCTTCACTaGTTTAGTGAACAGCTCTTT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLPKVLH*FSEQLF
Trigger: AAAGAGCTGTTCACTAAAGCAGTGAAGCACTTTGGG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGCCTCTTCCCCAAAGTaGTTCACTGCTTTAGTGAAC +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWASSPK*FTALVN
Trigger: GTTCACTAAAGCAGTGAAGCACTTTGGGGAAGAGGC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGGAAGCGGTCAGCCTTaGCCATCCGATCCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHGSGQP*PSDPAH
Trigger: ATGAGCTGGATCGGATGGCCAAGGCTGACCGCTTCC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCTGAGCAATTACATTaGTACTCTCAGAATGAGCCA +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSEQLH*YSQNEP
Trigger: TGGCTCATTCTGAGAGTATCAATGTAATTGCTCAGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTCTGAGCAATTACATTaGTACTCTCAGAATGAGCCA +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTSEQLH*YSQNEP
Trigger: TGGCTCATTCTGAGAGTATCAATGTAATTGCTCAGA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACTTTTTGAAGTACAGTaGTTGCAGTCTTTGCTGGTA +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLFEVQ*LQSLLV
Trigger: TACCAGCAAAGACTGCAATCACTGTACTTCAAAAAG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTGTTGTAGCTCATTGTaGTCTTTCCTCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTCCSSL*SFLIFS
Trigger: AGAGAAGATGAGGAAAGAGCACAATGAGCTACAACA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCTCCACTCTCTTCACTaGTCTCCTTGGCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQLHSLH*SPWPSS
Trigger: TGAGGAAGGCCAAGGAGAGCAGTGAAGAGAGTGGAG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTGCCCTTTGTCATTCTaGATAACTATCTGCTGTATG +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTCPLSF*ITICCM
Trigger: CATACAGCAGATAGTTATCCAGAATGACAAAGGGCA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGATTTCAGGGCATTGGTaGGCTGGGGAATATTCTTCT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWISGHW*AGEYSS
Trigger: AGAAGAATATTCCCCAGCCCACCAATGCCCTGAAAT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCTTGTCTCCAGGCTGTaGGGGCTGAGACTTCTGATA +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQLVSRL*GLRLLI
Trigger: TATCAGAAGTCTCAGCCCCCACAGCCTGGAGACAAG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGCCAGGGTGATGAACTaGCTGACAACAGACACGAAC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVARVMN*LTTDTN
Trigger: GTTCGTGTCTGTTGTCAGCCAGTTCATCACCCTGGC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCTTCACTGCTCTCCTTaGCCTTCCTCACCTTCCGCT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLHCSP*PSSPSA
Trigger: AGCGGAAGGTGAGGAAGGCCAAGGAGAGCAGTGAAG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGACAGCAAAAGATAAATaGAATCCCCCGGCCGCCTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQTAKDK*NPPAAS
Trigger: AGAGGCGGCCGGGGGATTTCATTTATCTTTTGCTGT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGCCGGCTCCATTGTCTaGAGTGCAAAGTTGCTATCA +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVAGSIV*SAKLLS
Trigger: TGATAGCAACTTTGCACTTCAGACAATGGAGCCGGC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGCCGGCTCCATTGTCTaGAGTGCAAAGTTGCTATCA +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQAGSIV*SAKLLS
Trigger: TGATAGCAACTTTGCACTTCAGACAATGGAGCCGGC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTACCTTTATACAGCCAATaGGGGAGGTGTGTATCCGAG +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVPLYSQ*GRCVSE
Trigger: CTCGGATACACACCTCCCTCATTGGCTGTATAAAGG...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAGCGAAGATGGAGCCTaGAGTCCAAACTCTCCACTC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSEDGA*SPNSPL
Trigger: GAGTGGAGAGTTTGGACTTCAGGCTCCATCTTCGCT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGAACAGCAGCCAGTACTaGACTGTGTTACCACTCCTC +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQNSSQY*TVLPLL
Trigger: GAGGAGTGGTAACACAGTTCAGTACTGGCTGCTGTT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCCTGGTCCTTTTTCTTaGTACAGTATATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWPGPFS*YSISAT
Trigger: AGTGGCAGATATACTGTAGCAAGAAAAAGGACCAGG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGTGGAGTCGGGATCCTaGCCTTTGTCATTCTGGATA +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQVESGS*PLSFWI
Trigger: TATCCAGAATGACAAAGGGCAGGATCCCGACTCCAC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTGCTTAACTTGCTTGTaGTCAGTTGTCTCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWCLTCL*SVVSFS
Trigger: GGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGTCATCAATGGCATCTaGTTCTTTCTGCTTGGAGTT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWVINGI*FFLLGV
Trigger: AACTCCAAGCAGAAAGAAGCAGATGCCATTGATGAC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACTCCACTCTCTTCACTaGTCTCCTTGGCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTLHSLH*SPWPSS
Trigger: TGAGGAAGGCCAAGGAGAGCAGTGAAGAGAGTGGAG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATATGTGATTTCTGGATaGTCATTGTTTCGGAAACAG +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLYVISG*SLFRKQ
Trigger: CTGTTTCCGAAACAATGACCATCCAGAAATCACATA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGGGTTAGCCTCCTCCTaGTCAGCTCAAACATCTGAG +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHGLASS*SAQTSE
Trigger: CTCAGATGTTTGAGCTGACCAGGAGGAGGCTAACCC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGGCATCTGGAGGCAATaGTGCAGAATGGACATGAAG +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQGIWRQ*CRMDMK
Trigger: CTTCATGTCCATTCTGCACCATTGCCTCCAGATGCC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAATTTCTTCCTTCTCTTaGGTCTTAGCATCACATTCT +
Preference number: 4 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLISSFS*VLASHS
Trigger: AGAATGTGATGCTAAGACCCAAGAGAAGGAAGAAAT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCTTGTCTCCAGGCTGTaGGGGCTGAGACTTCTGATA +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLVSRL*GLRLLI
Trigger: TATCAGAAGTCTCAGCCCCCACAGCCTGGAGACAAG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGCCAGGGTGATGAACTaGCTGACAACAGACACGAAC +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHARVMN*LTTDTN
Trigger: GTTCGTGTCTGTTGTCAGCCAGTTCATCACCCTGGC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATACAGCAAAAGATAAATaGAATCCCCCGGCCGCCTCT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHTAKDK*NPPAAS
Trigger: AGAGGCGGCCGGGGGATTTCATTTATCTTTTGCTGT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTACCCTGTGTTTGTCTGTaGGGTCAAGTTCATCCACAA +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVPCVCL*GQVHPQ
Trigger: TTGTGGATGAACTTGACCTCACAGACAAACACAGGG...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGGCCATCCAAGTCGATaGATCTGGTTACAAACCTCA +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVGHPSR*IWLQTS
Trigger: TGAGGTTTGTAACCAGATTCATCGACTTGGATGGCC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCTTTATACAGCCAATaGGGGAGGTGTGTATCCGAG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTPLYSQ*GRCVSE
Trigger: CTCGGATACACACCTCCCTCATTGGCTGTATAAAGG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGTCAGCTCAAACATCTaGGTGGCGCTTTTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQVSSNI*VALFVS
Trigger: AGACACAAAAAGCGCCACTCAGATGTTTGAGCTGAC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAACAGCAGCCAGTACTaGACTGTGTTACCACTCCTC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTNSSQY*TVLPLL
Trigger: GAGGAGTGGTAACACAGTTCAGTACTGGCTGCTGTT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGAATATTCTTCTTCTTaGGTGTTAGACTCACTGGAG +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWEYSSS*VLDSLE
Trigger: CTCCAGTGAGTCTAACACTCAAGAAGAAGAATATTC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAAGGATGTTGCAATTCTaGGCTCTCCGACCATCAATC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVRMLQF*ALRPSI
Trigger: GATTGATGGTCGGAGAGCTCAGAATTGCAACATCCT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCTTTTTGAAGTACAGTaGTTGCAGTCTTTGCTGGTA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLFEVQ*LQSLLV
Trigger: TACCAGCAAAGACTGCAATCACTGTACTTCAAAAAG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTTGCTACAGTATATCTaGCACTTTTTCTCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLLQYI*HFFSAG
Trigger: TCCAGCAGAGAAAAAGTGGCAGATATACTGTAGCAA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGGGCTTGGTTCTCAGTaGTGTCTTCAGACTCTCGAT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTGLGSQ*CLQTLD
Trigger: ATCGAGAGTCTGAAGACAGCACTGAGAACCAAGCCC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTTCTGGATAACTATCTaGTGTATGATTCTGTCTAAC +
Preference number: 4 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTFWITI*CMILSN
Trigger: GTTAGACAGAATCATACAGCAGATAGTTATCCAGAA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGTGGAGTCGGGATCCTaGCCTTTGTCATTCTGGATA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTVESGS*PLSFWI
Trigger: TATCCAGAATGACAAAGGGCAGGATCCCGACTCCAC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGACCTGCTGCTTAACTTaGTTGTGCTCAGTTGTCTCC +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQTCCLT*LCSVVS
Trigger: GGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAACCTGCTGCTTAACTTaGTTGTGCTCAGTTGTCTCC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVTCCLT*LCSVVS
Trigger: GGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATCGACAGAAGGATGTTaGAATTCTGAGCTCTCCGAC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVSTEGC*NSELSD
Trigger: GTCGGAGAGCTCAGAATTGCAACATCCTTCTGTCGA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTTCTGCCACACGCTCTaGAAACTTCTTTTTGAAGTA +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWFCHTL*KLLFEV
Trigger: TACTTCAAAAAGAAGTTTGCAGAGCGTGTGGCAGAA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTTGGGCTTCACTTCTaGCACACGCTCTGCAAACTT +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVFGLHF*HTLCKL
Trigger: AAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGAGGGCATTGGTGGGCTaGGGAATATTCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQRALVG*GIFFFL
Trigger: CAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATAAGAACTCATCTGGCTaGATCTTGCCAGCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHKNSSG*ILPASS
Trigger: GGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCCCTGTGTTTGTCTGTaGGGTCAAGTTCATCCACAA +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHPCVCL*GQVHPQ
Trigger: TTGTGGATGAACTTGACCTCACAGACAAACACAGGG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGGCCATCCAAGTCGATaGATCTGGTTACAAACCTCA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTGHPSR*IWLQTS
Trigger: TGAGGTTTGTAACCAGATTCATCGACTTGGATGGCC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGTCAGCTCAAACATCTaGGTGGCGCTTTTTGTGTCT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHVSSNI*VALFVS
Trigger: AGACACAAAAAGCGCCACTCAGATGTTTGAGCTGAC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAGGATGTTGCAATTCTaGGCTCTCCGACCATCAATC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTRMLQF*ALRPSI
Trigger: GATTGATGGTCGGAGAGCTCAGAATTGCAACATCCT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTTTACTTTCGCTGCTTaGGGAATATCCCGCAACTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQFTFAA*GISRNS
Trigger: AGAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAAAGATCTTCAACATCTaGGAAGCTGAAGCTAGCCAG +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVKIFNI*EAEASQ
Trigger: CTGGCTAGCTTCAGCTTCTCAGATGTTGAAGATCTT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTTTCTCTGCTGGAAGTaGAAACATGGCTTCCCTGTG +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHFLCWK*KHGFPV
Trigger: CACAGGGAAGCCATGTTTGCACTTCCAGCAGAGAAA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCCCTGGCTCAGCACTaGATTGATGAAGGACATGAT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSLAQH*IDEGHD
Trigger: ATCATGTCCTTCATCAATGCAGTGCTGAGCCAGGGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCGACAGAAGGATGTTaGAATTCTGAGCTCTCCGAC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSTEGC*NSELSD
Trigger: GTCGGAGAGCTCAGAATTGCAACATCCTTCTGTCGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATTTGGGCTTCACTTCTaGCACACGCTCTGCAAACTT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTFGLHF*HTLCKL
Trigger: AAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGATCTTGAATCCATATaGATTGCCTCTTTGTCCTTT +
Preference number: 4 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWDLESI*IASLSF
Trigger: AAAGGACAAAGAGGCAATGCATATGGATTCAAGATC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGCCTCTTCCCCAAAGTaGTTCACTGCTTTAGTGAAC +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHASSPK*FTALVN
Trigger: GTTCACTAAAGCAGTGAAGCACTTTGGGGAAGAGGC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGCCTCTTCCCCAAAGTaGTTCACTGCTTTAGTGAAC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTASSPK*FTALVN
Trigger: GTTCACTAAAGCAGTGAAGCACTTTGGGGAAGAGGC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAGGGCATTGGTGGGCTaGGGAATATTCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTRALVG*GIFFFL
Trigger: CAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGATTTCAGGGCATTGGTaGGCTGGGGAATATTCTTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQISGHW*AGEYSS
Trigger: AGAAGAATATTCCCCAGCCCACCAATGCCCTGAAAT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATAGGATTTCAGGGCATTaGTGGGCTGGGGAATATTCT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHRISGH*WAGEYS
Trigger: AGAATATTCCCCAGCCCACCAATGCCCTGAAATCCT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp CACACCTTCACTCACAGAGGAGAGAAGAAATTGCCATaGTTTTGGATCGCAAGGCAGTGTAATGGAAAGTTC +
Preference number: 4 (lower is better)
Translates to: HTFTHRGEKKLP*FWIARQCNGKF
Trigger: GAACTTTCCATTACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGAAGGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
3UTR CAA 72 bp CACATTCACACCTTCACTCACAGAGGAGAGAAGAAATaGCCATTGTTTTGGATCGCAAGGCAGTGTAATGGA +
Preference number: 4 (lower is better)
Translates to: HIHTFTHRGEKK*PLFWIARQCNG
Trigger: TCCATTACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGAAGGTGTGAATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATCTGTGCTCAGACTCTaGGCAATTACATTGATACTC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVSVLRL*AITLIL
Trigger: GAGTATCAATGTAATTGCTCAGAGTCTGAGCACAGA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTCTGTGCTCAGACTCTaGGCAATTACATTGATACTC +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQSVLRL*AITLIL
Trigger: GAGTATCAATGTAATTGCTCAGAGTCTGAGCACAGA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATACTCTTCGCTTAGGTTaGGGACTTTGGGGTACTTAT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHTLRLG*GLWGTY
Trigger: ATAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTTTACTTTCGCTGCTTaGGGAATATCCCGCAACTCT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHFTFAA*GISRNS
Trigger: AGAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCCTGGTCCTTTTTCTTaGTACAGTATATCTGCCACT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQPGPFS*YSISAT
Trigger: AGTGGCAGATATACTGTAGCAAGAAAAAGGACCAGG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGTCATCAATGGCATCTaGTTCTTTCTGCTTGGAGTT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQVINGI*FFLLGV
Trigger: AACTCCAAGCAGAAAGAAGCAGATGCCATTGATGAC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCATGTTTACTTTCGCTaGTTGAGGAATATCCCGCAA +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQHVYFR*LRNIPQ
Trigger: TTGCGGGATATTCCTCAAGCAGCGAAAGTAAACATG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAAAGTTGAGAATACATaGCAGGCCATCCAAGTCGAT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTKVENT*QAIQVD
Trigger: ATCGACTTGGATGGCCTGTCATGTATTCTCAACTTT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATAAAGTTGAGAATACATaGCAGGCCATCCAAGTCGAT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHKVENT*QAIQVD
Trigger: ATCGACTTGGATGGCCTGTCATGTATTCTCAACTTT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGTTTCCGGTTCCGTTTaGGTTTTGAAAGGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHVSGSV*VLKGLC
Trigger: ACAAAGACCTTTCAAAACTCAAACGGAACCGGAAAC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTGCTACAGTATATCTaGCACTTTTTCTCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVLLQYI*HFFSAG
Trigger: TCCAGCAGAGAAAAAGTGGCAGATATACTGTAGCAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACTCATCTTCTCTGCCTaGTCTTTCCATTGCTTAACT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTLIFSA*SFHCLT
Trigger: AGTTAAGCAATGGAAAGAGCAGGCAGAGAAGATGAG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTGTTGTAGCTCATTGTaGTCTTTCCTCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQCCSSL*SFLIFS
Trigger: AGAGAAGATGAGGAAAGAGCACAATGAGCTACAACA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTCTGCCACACGCTCTaGAAACTTCTTTTTGAAGTA +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVFCHTL*KLLFEV
Trigger: TACTTCAAAAAGAAGTTTGCAGAGCGTGTGGCAGAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACATGTTTACTTTCGCTaGTTGAGGAATATCCCGCAA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTHVYFR*LRNIPQ
Trigger: TTGCGGGATATTCCTCAAGCAGCGAAAGTAAACATG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCCAAAGTGCTTCACTaGTTTAGTGAACAGCTCTTT +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTPKVLH*FSEQLF
Trigger: AAAGAGCTGTTCACTAAAGCAGTGAAGCACTTTGGG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCTGAGCAATTACATTaGTACTCTCAGAATGAGCCA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSEQLH*YSQNEP
Trigger: TGGCTCATTCTGAGAGTATCAATGTAATTGCTCAGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGAATATTCTTCTTCTTaGGTGTTAGACTCACTGGAG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTEYSSS*VLDSLE
Trigger: CTCCAGTGAGTCTAACACTCAAGAAGAAGAATATTC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR TCA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCTTTTTGAAGTACAGTaGTTGCAGTCTTTGCTGGTA +
Preference number: 4 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLFEVQ*LQSLLV
Trigger: TACCAGCAAAGACTGCAATCACTGTACTTCAAAAAG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATTGCTACAGTATATCTaGCACTTTTTCTCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTLLQYI*HFFSAG
Trigger: TCCAGCAGAGAAAAAGTGGCAGATATACTGTAGCAA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAGATCTTGAATCCATATaGATTGCCTCTTTGTCCTTT +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVDLESI*IASLSF
Trigger: AAAGGACAAAGAGGCAATGCATATGGATTCAAGATC...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATGCCCTTTGTCATTCTaGATAACTATCTGCTGTATG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTCPLSF*ITICCM
Trigger: CATACAGCAGATAGTTATCCAGAATGACAAAGGGCA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGATTTCTTCCTTCTCTTaGGTCTTAGCATCACATTCT +
Preference number: 4 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQISSFS*VLASHS
Trigger: AGAATGTGATGCTAAGACCCAAGAGAAGGAAGAAAT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAATTTCTTCCTTCTCTTaGGTCTTAGCATCACATTCT +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVISSFS*VLASHS
Trigger: AGAATGTGATGCTAAGACCCAAGAGAAGGAAGAAAT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTCTGGATAACTATCTaGTGTATGATTCTGTCTAAC +
Preference number: 4 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVFWITI*CMILSN
Trigger: GTTAGACAGAATCATACAGCAGATAGTTATCCAGAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATATGTGATTTCTGGATaGTCATTGTTTCGGAAACAG +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTYVISG*SLFRKQ
Trigger: CTGTTTCCGAAACAATGACCATCCAGAAATCACATA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR GCA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATTCTGGATAACTATCTaGTGTATGATTCTGTCTAAC +
Preference number: 4 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTFWITI*CMILSN
Trigger: GTTAGACAGAATCATACAGCAGATAGTTATCCAGAA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp TCTCCTTGGCCTTCCTCACCTTCCGCTCCCTCTCCCGCTGCTCTTTaGGCTGAGCTTCCAGGCGAGCCCGCCGTTCCTCCTCCTCCTTCC +
Preference number: 5 (lower is better)
Translates to: SPWPSSPSAPSPAAL*AELPGEPAVPPPPS
Trigger: GGAAGGAGGAGGAGGAACGGCGGGCTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGAGGGAGCGGAAGGTGAGGAAGGCCAAGGAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp CCTGGGACTGCTGCACAGACGGCCCTCCTGTTCAGCTCGTGGAGCTaGGCCGTGAGGTCTGCCACCTGCTGCTTAACTTGCTTGTGCTCA +
Preference number: 5 (lower is better)
Translates to: PGTAAQTALLFSSWS*AVRSATCCLTCLCS
Trigger: TGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGGGCCGTCTGTGCAGCAGTCCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp GCCCTCCTGTTCAGCTCGTGGAGCTGCGCCGTGAGGTCTGCCACCTaGTGCTTAACTTGCTTGTGCTCAGTTGTCTCCTTTTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: ALLFSSWSCAVRSAT*CLTCLCSVVSFSSF
Trigger: GAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp ACAGACGGCCCTCCTGTTCAGCTCGTGGAGCTGCGCCGTGAGGTCTaGCACCTGCTGCTTAACTTGCTTGTGCTCAGTTGTCTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: TDGPPVQLVELRREV*HLLLNLLVLSCLLF
Trigger: GAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGGGCCGTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp CACTCCTCTTGTAAGGCATCTGGAGGCAATGGTGCAGAATGGACATaGAGTGGGGGTAGGCTTCGCTGTGGGTTAGCCTCCTCCTGGTCA +
Preference number: 5 (lower is better)
Translates to: HSSCKASGGNGAEWT*SGGRLRCGLASSWS
Trigger: TGACCAGGAGGAGGCTAACCCACAGCGAAGCCTACCCCCACTTCATGTCCATTCTGCACCATTGCCTCCAGATGCCTTACAAGAGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp CTCCTGTTCAGCTCGTGGAGCTGCGCCGTGAGGTCTGCCACCTGCTaGTTAACTTGCTTGTGCTCAGTTGTCTCCTTTTCCAGCTTCTCT +
Preference number: 5 (lower is better)
Translates to: LLFSSWSCAVRSATC*LTCLCSVVSFSSFS
Trigger: AGAGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAACAACAGACACGAACTaGTCTCCAGGCTGTGGGGGC +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLTTDTN*SPGCGG
Trigger: GCCCCCACAGCCTGGAGACAAGTTCGTGTCTGTTGT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp GGCTGCTGTCCGTCACCTGGTTGGAAATGCGTTTCCGGTTCCGTTTaGGTTTTGAAAGGTCTTTGTCGAACACCTCTCCTGAGCGCAGCG +
Preference number: 5 (lower is better)
Translates to: GCCPSPGWKCVSGSV*VLKGLCRTPLLSAA
Trigger: CGCTGCGCTCAGGAGAGGTGTTCGACAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCATCTGGCTGGATCTaGCCAGCCTCTTCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSSGWI*PASSPK
Trigger: CTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp TCGAGCTCCTCCACAGGGGGCATGGGCAGCGCCGGCTCCATTGTCTaGAGTGCAAAGTTGCTATCATTCCTAAGCCGATATGTGATTTCT +
Preference number: 5 (lower is better)
Translates to: SSSSTGGMGSAGSIV*SAKLLSFLSRYVIS
Trigger: AGAAATCACATATCGGCTTAGGAATGATAGCAACTTTGCACTTCAGACAATGGAGCCGGCGCTGCCCATGCCCCCTGTGGAGGAGCTCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp ACTCCAGCTCCGTCTCTACAGCTTTCAGGCCACTCCTCAGGGTGCTaGTCTCCTTGTCCAGCTCAGTCATGTTTACTTTCGCTGCTTGAG +
Preference number: 5 (lower is better)
Translates to: TPAPSLQLSGHSSGC*SPCPAQSCLLSLLE
Trigger: CTCAAGCAGCGAAAGTAAACATGACTGAGCTGGACAAGGAGATCAGCACCCTGAGGAGTGGCCTGAAAGCTGTAGAGACGGAGCTGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCACTCGGGCCAACTGGTaGCTCCCTTGTTTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTTRANW*LPCFLP
Trigger: AGGAAGAAAACAAGGGAGCAACCAGTTGGCCCGAGT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACAACAGACACGAACTaGTCTCCAGGCTGTGGGGGC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTTDTN*SPGCGG
Trigger: GCCCCCACAGCCTGGAGACAAGTTCGTGTCTGTTGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCACAAACCTCATGGGCTaGGTTCTCAGTGCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTTNLMG*VLSAVF
Trigger: GAAGACAGCACTGAGAACCAAGCCCATGAGGTTTGT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCGGCAACTTGGACCAGTaGAAGGATTTCAGGGCATTG +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTGNLDQ*KDFRAL
Trigger: CAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCC...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTACGAATCGCTTCTACTTaGGGCTTCACTTCTGCCACA +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLRIAST*GFTSAT
Trigger: TGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCG...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCAGGGTGCTGATCTCCTaGTCCAGCTCAGTCATGTTT +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTRVLIS*SSSVMF
Trigger: AAACATGACTGAGCTGGACAAGGAGATCAGCACCCT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACTCGGGCCAACTGGTaGCTCCCTTGTTTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTRANW*LPCFLP
Trigger: AGGAAGAAAACAAGGGAGCAACCAGTTGGCCCGAGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTGGTATCCGCTATCTaGTTGAGGCTGGAGATCTTG +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLVSAI*LRLEIL
Trigger: CAAGATCTCCAGCCTCAACAAGATAGCGGATACCAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTTGGTATCCGCTATCTaGTTGAGGCTGGAGATCTTG +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTLVSAI*LRLEIL
Trigger: CAAGATCTCCAGCCTCAACAAGATAGCGGATACCAA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp CAGGTTGAATTCCTAACATCAGAAATTCATAGCGAAGATGGAGCCTaGAGTCCAAACTCTCCACTCCGGCTCCCTGGCTCAGCACTGCAT +
Preference number: 5 (lower is better)
Translates to: QVEFLTSEIHSEDGA*SPNSPLRLPGSALH
Trigger: ATGCAGTGCTGAGCCAGGGAGCCGGAGTGGAGAGTTTGGACTTCAGGCTCCATCTTCGCTATGAATTTCTGATGTTAGGAATTCAACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCCTGGTCCTTTTTCTaGCTACAGTATATCTGCCAC +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSWSFF*LQYICH
Trigger: GTGGCAGATATACTGTAGCAAGAAAAAGGACCAGGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACAAACCTCATGGGCTaGGTTCTCAGTGCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTNLMG*VLSAVF
Trigger: GAAGACAGCACTGAGAACCAAGCCCATGAGGTTTGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTCTGAGTGGCGCTTTTaGTGTCTATGTGAACCAGTT +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTSEWRF*CLCEPV
Trigger: AACTGGTTCACATAGACACAAAAAGCGCCACTCAGA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATGCTGCTTAACTTGCTaGTGCTCAGTTGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLCCLTC*CSVVSF
Trigger: AAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGAACTCCTGCTGTCTTaGGTAGGCAGAGAACGTTCT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWELLLS*VGRERS
Trigger: AGAACGTTCTCTGCCTACCAAAGACAGCAGGAGTTC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATCTTTCTGCTTGGAGTaGTTCACAAAGAACTCCTGC +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLSFCLE*FTKNSC
Trigger: GCAGGAGTTCTTTGTGAACAACTCCAAGCAGAAAGA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTGAGGCTGGAGATCTaGAATCCATATGCATTGCCT +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLRLEI*NPYALP
Trigger: AGGCAATGCATATGGATTCAAGATCTCCAGCCTCAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGAGGGTGCTGATCTCCTaGTCCAGCTCAGTCATGTTT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWRVLIS*SSSVMF
Trigger: AAACATGACTGAGCTGGACAAGGAGATCAGCACCCT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAACAACAGACACGAACTaGTCTCCAGGCTGTGGGGGC +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVTTDTN*SPGCGG
Trigger: GCCCCCACAGCCTGGAGACAAGTTCGTGTCTGTTGT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATCTTCACTGCTCTCCTaGGCCTTCCTCACCTTCCGC +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVSSLLS*AFLTFR
Trigger: GCGGAAGGTGAGGAAGGCCAAGGAGAGCAGTGAAGA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCGTTTCCGGTTCCGTTaGAGTTTTGAAAGGTCTTTG +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTRFRFR*SFERSL
Trigger: CAAAGACCTTTCAAAACTCAAACGGAACCGGAAACG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp CCGAAGAACTCATCTGGCTGGATCTTGCCAGCCTCTTCCCCAAAGTaGTTCACTGCTTTAGTGAACAGCTCTTTAGCTTCTGCTAGAAGA +
Preference number: 5 (lower is better)
Translates to: PKNSSGWILPASSPK*FTALVNSSLASARR
Trigger: TCTTCTAGCAGAAGCTAAAGAGCTGTTCACTAAAGCAGTGAAGCACTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 90 bp TCAGGCAACTTGGACCAGTTGAAGGATTTCAGGGCATTGGTGGGCTaGGGAATATTCTTCTTCTTGAGTGTTAGACTCACTGGAGCACCA +
Preference number: 5 (lower is better)
Translates to: SGNLDQLKDFRALVG*GIFFFLSVRLTGAP
Trigger: TGGTGCTCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCGGGATCCTGCCCTTaGTCATTCTGGATAACTATC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSGSCP*SFWITI
Trigger: GATAGTTATCCAGAATGACAAAGGGCAGGATCCCGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTCTGTTGTAGCTCATaGTGCTCTTTCCTCATCTTC +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLFCCSS*CSFLIF
Trigger: GAAGATGAGGAAAGAGCACAATGAGCTACAACAGAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGCTTGCTTGTGCTCAGTaGTCTCCTTTTCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLACAQ*SPFPAS
Trigger: AGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAG...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCTCTGCTTCTTTCTGCTaGGAGTTGTTCACAAAGAAC +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTSASFC*ELFTKN
Trigger: GTTCTTTGTGAACAACTCCAAGCAGAAAGAAGCAGA...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGTTTACTTTCGCTGCTaGAGGAATATCCCGCAACTC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWVYFRC*RNIPQL
Trigger: GAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAAC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTCATCTGGCTGGATCTaGCCAGCCTCTTCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQSSGWI*PASSPK
Trigger: CTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCTTCACTGCTCTCCTaGGCCTTCCTCACCTTCCGC +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSSLLS*AFLTFR
Trigger: GCGGAAGGTGAGGAAGGCCAAGGAGAGCAGTGAAGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp CAAGTCGATGAATCTGGTTACAAACCTCATGGGCTTGGTTCTCAGTaGTGTCTTCAGACTCTCGATGGTTTTACTCCTCTCCTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: QVDESGYKPHGLGSQ*CLQTLDGFTPLLLF
Trigger: GAAGAGGAGGAGAGGAGTAAAACCATCGAGAGTCTGAAGACAGCACTGAGAACCAAGCCCATGAGGTTTGTAACCAGATTCATCGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 90 bp AAATTAAGTTTTGTGATTGGTCGCTCCCGGCTGCTGTCCGTCACCTaGTTGGAAATGCGTTTCCGGTTCCGTTTGAGTTTTGAAAGGTCT +
Preference number: 5 (lower is better)
Translates to: KLSFVIGRSRLLSVT*LEMRFRFRLSFERS
Trigger: AGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCCGGGAGCGACCAATCACAAAACTTAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCCTGGTCCTTTTTCTaGCTACAGTATATCTGCCAC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSWSFF*LQYICH
Trigger: GTGGCAGATATACTGTAGCAAGAAAAAGGACCAGGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAACTCGGGCCAACTGGTaGCTCCCTTGTTTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVTRANW*LPCFLP
Trigger: AGGAAGAAAACAAGGGAGCAACCAGTTGGCCCGAGT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGACTGTTCCATCCAATTaGTTCTCAGGCAACTTGGAC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWTVPSN*FSGNLD
Trigger: GTCCAAGTTGCCTGAGAACAAATTGGATGGAACAGT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCATCACTGACAGCTCTTaGACTTTAAGTTTGGAACTC +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTITDSS*TLSLEL
Trigger: GAGTTCCAAACTTAAAGTCAAAGAGCTGTCAGTGAT...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp AACACCGTGGAGAATGTGAACTCCTTGGTGGGCAGGGACTCTGTCTTGCTTACCCGCTTGATTTCATCATaGGATAATTTCAACCTCGAC +
Preference number: 5 (lower is better)
Translates to: NTVENVNSLVGRDSVLLTRLISS*DNFNLD
Trigger: GTCGAGGTTGAAATTATCCAATGATGAAATCAAGCG...GGTAAGCAAGACAGAGTCCCTGCCCACCAAGGAGTTCACATTCTCCACGGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTTGAGGCTGGAGATCTaGAATCCATATGCATTGCCT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWLRLEI*NPYALP
Trigger: AGGCAATGCATATGGATTCAAGATCTCCAGCCTCAA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTGTCAATACTGGATTaGGTATCCGCTATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLSILD*VSAILL
Trigger: CAACAAGATAGCGGATACCAAATCCAGTATTGACAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTCATCTGGCTGGATCTaGCCAGCCTCTTCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHSSGWI*PASSPK
Trigger: CTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 90 bp AAGTTTTCCAGAGGTGTGGAGTCGGGATCCTGCCCTTTGTCATTCTaGATAACTATCTGCTGTATGATTCTGTCTAACAGCAGCCAGTAC +
Preference number: 5 (lower is better)
Translates to: KFSRGVESGSCPLSF*ITICCMILSNSSQY
Trigger: GTACTGGCTGCTGTTAGACAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCTGGAAAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTAACAAACCTCATGGGCTaGGTTCTCAGTGCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVTNLMG*VLSAVF
Trigger: GAAGACAGCACTGAGAACCAAGCCCATGAGGTTTGT...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAAATGCCTGTCTAGTGTaGAATTTTCATGTTCCCTTA +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLNACLV*NFHVPL
Trigger: TAAGGGAACATGAAAATTCAACACTAGACAGGCATT...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTTCTGTTGTAGCTCATaGTGCTCTTTCCTCATCTTC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWFCCSS*CSFLIF
Trigger: GAAGATGAGGAAAGAGCACAATGAGCTACAACAGAA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTCTGCTTCTTTCTGCTaGGAGTTGTTCACAAAGAAC +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWSASFC*ELFTKN
Trigger: GTTCTTTGTGAACAACTCCAAGCAGAAAGAAGCAGA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTAGTTAGAATTGCCCGCTaGATTTCATCATTGGATAAT +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLVRIAR*ISSLDN
Trigger: ATTATCCAATGATGAAATCAAGCGGGCAATTCTAAC...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGCGAATCGCTTCTACTTaGGGCTTCACTTCTGCCACA +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQRIAST*GFTSAT
Trigger: TGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCG...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp GTGCCTGGCCCACAACCGTTGAGCTCACCCGTCTGTTTTCCAACTCCATTTCTATTGAATCCATATGCATaGCCTCTTTGTCCTTTATTC +
Preference number: 5 (lower is better)
Translates to: VPGPQPLSSPVCFPTPFLLNPYA*PLCPLF
Trigger: GAATAAAGGACAAAGAGGCAATGCATATGGATTCAA...TAGAAATGGAGTTGGAAAACAGACGGGTGAGCTCAACGGTTGTGGGCCAGGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGATTTCTGGATGGTCATaGTTTCGGAAACAGCAAAAG +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWISGWS*FRKQQK
Trigger: CTTTTGCTGTTTCCGAAACAATGACCATCCAGAAAT...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGATGGCTTCCCTGTGTTaGTCTGTGAGGTCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQMASLC*SVRSSS
Trigger: TGAACTTGACCTCACAGACAAACACAGGGAAGCCAT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGGGAATATTCTTCTTCTaGAGTGTTAGACTCACTGGA +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWGIFFF*SVRLTG
Trigger: TCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCC...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGGCAACTTGGACCAGTaGAAGGATTTCAGGGCATTG +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTGNLDQ*KDFRAL
Trigger: CAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGGCAACTTGGACCAGTaGAAGGATTTCAGGGCATTG +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHGNLDQ*KDFRAL
Trigger: CAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGAACTCCTGCTGTCTTaGGTAGGCAGAGAACGTTCT +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTELLLS*VGRERS
Trigger: AGAACGTTCTCTGCCTACCAAAGACAGCAGGAGTTC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCGAATCGCTTCTACTTaGGGCTTCACTTCTGCCACA +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHRIAST*GFTSAT
Trigger: TGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp CCTTGGGCAGATCCTCCTGTTCATCCATTGTTAGAATTGCCCGCTTaGTTTCATCATTGGATAATTTCAACCTCGACAGAAGGATGTTGC +
Preference number: 5 (lower is better)
Translates to: PWADPPVHPLLELPA*FHHWIISTSTEGCC
Trigger: GCAACATCCTTCTGTCGAGGTTGAAATTATCCAATGATGAAATCAAGCGGGCAATTCTAACAATGGATGAACAGGAGGATCTGCCCAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATATGGCTTCCCTGTGTTaGTCTGTGAGGTCAAGTTCA +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHMASLC*SVRSSS
Trigger: TGAACTTGACCTCACAGACAAACACAGGGAAGCCAT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTCGGGATCCTGCCCTTaGTCATTCTGGATAACTATC +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHSGSCP*SFWITI
Trigger: GATAGTTATCCAGAATGACAAAGGGCAGGATCCCGA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCGGGATCCTGCCCTTaGTCATTCTGGATAACTATC +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSGSCP*SFWITI
Trigger: GATAGTTATCCAGAATGACAAAGGGCAGGATCCCGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp CGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACCGTGGTGCCTGCTCTTTCCATaGCTTAACTTCATTTTCATT +
Preference number: 5 (lower is better)
Translates to: RFLSTMHIGILPSLKTPWCLLFP*LNFIFI
Trigger: AATGAAAATGAAGTTAAGCAATGGAAAGAGCAGGCA...CCACGGTGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCTTGCTTGTGCTCAGTaGTCTCCTTTTCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLACAQ*SPFPAS
Trigger: AGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGACTGTTCCATCCAATTaGTTCTCAGGCAACTTGGAC +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQTVPSN*FSGNLD
Trigger: GTCCAAGTTGCCTGAGAACAAATTGGATGGAACAGT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTGAGGCTGGAGATCTaGAATCCATATGCATTGCCT +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVLRLEI*NPYALP
Trigger: AGGCAATGCATATGGATTCAAGATCTCCAGCCTCAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTTGGTATCCGCTATCTaGTTGAGGCTGGAGATCTTG +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHLVSAI*LRLEIL
Trigger: CAAGATCTCCAGCCTCAACAAGATAGCGGATACCAA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGAACTCTTCGCTTAGGTaGAGGACTTTGGGGTACTTA +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQNSSLR*RTLGYL
Trigger: TAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGTT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAGTTTACTTTCGCTGCTaGAGGAATATCCCGCAACTC +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTVYFRC*RNIPQL
Trigger: GAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAAC...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTACGTTTCCGGTTCCGTTaGAGTTTTGAAAGGTCTTTG +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVRFRFR*SFERSL
Trigger: CAAAGACCTTTCAAAACTCAAACGGAACCGGAAACG...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp CTTTTTCTTGCTACAGTATATCTGCCACTTTTTCTCTGCTGGAAGTaGAAACATGGCTTCCCTGTGTTTGTCTGTGAGGTCAAGTTCATC +
Preference number: 5 (lower is better)
Translates to: LFLATVYLPLFLCWK*KHGFPVFVCEVKFI
Trigger: GATGAACTTGACCTCACAGACAAACACAGGGAAGCCATGTTTGCACTTCCAGCAGAGAAAAAGTGGCAGATATACTGTAGCAAGAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTCCTGGTCCTTTTTCTaGCTACAGTATATCTGCCAC +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHSWSFF*LQYICH
Trigger: GTGGCAGATATACTGTAGCAAGAAAAAGGACCAGGA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTCTGAGTGGCGCTTTTaGTGTCTATGTGAACCAGTT +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHSEWRF*CLCEPV
Trigger: AACTGGTTCACATAGACACAAAAAGCGCCACTCAGA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATTGCTGCTTAACTTGCTaGTGCTCAGTTGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHCCLTC*CSVVSF
Trigger: AAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCA...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATGCTGCTTAACTTGCTaGTGCTCAGTTGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTCCLTC*CSVVSF
Trigger: AAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATACTGTTCCATCCAATTaGTTCTCAGGCAACTTGGAC +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHTVPSN*FSGNLD
Trigger: GTCCAAGTTGCCTGAGAACAAATTGGATGGAACAGT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATCTTTCTGCTTGGAGTaGTTCACAAAGAACTCCTGC +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTSFCLE*FTKNSC
Trigger: GCAGGAGTTCTTTGTGAACAACTCCAAGCAGAAAGA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085299.4
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATAACTCTTCGCTTAGGTaGAGGACTTTGGGGTACTTA +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHNSSLR*RTLGYL
Trigger: TAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGTT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATCGTTTCCGGTTCCGTTaGAGTTTTGAAAGGTCTTTG +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHRFRFR*SFERSL
Trigger: CAAAGACCTTTCAAAACTCAAACGGAACCGGAAACG...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 90 bp ACGTTCTTGATATTAAAGTTTTCCAGAGGTGTGGAGTCGGGATCCTaGCCTTTGTCATTCTGGATAACTATCTGCTGTATGATTCTGTCT +
Preference number: 5 (lower is better)
Translates to: TFLILKFSRGVESGS*PLSFWITICCMILS
Trigger: AGACAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCTGGAAAACTTTAATATCAAGAACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGGAATATTCTTCTTCTaGAGTGTTAGACTCACTGGA +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQGIFFF*SVRLTG
Trigger: TCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGATCACTGACAGCTCTTaGACTTTAAGTTTGGAACTC +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQITDSS*TLSLEL
Trigger: GAGTTCCAAACTTAAAGTCAAAGAGCTGTCAGTGAT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 90 bp AGTGCAAAGTTGCTATCATTCCTAAGCCGATATGTGATTTCTGGATaGTCATTGTTTCGGAAACAGCAAAAGATAAATGAAATCCCCCGG +
Preference number: 5 (lower is better)
Translates to: SAKLLSFLSRYVISG*SLFRKQQKINEIPR
Trigger: CCGGGGGATTTCATTTATCTTTTGCTGTTTCCGAAACAATGACCATCCAGAAATCACATATCGGCTTAGGAATGATAGCAACTTTGCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATATTTCTGGATGGTCATaGTTTCGGAAACAGCAAAAG +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHISGWS*FRKQQK
Trigger: CTTTTGCTGTTTCCGAAACAATGACCATCCAGAAAT...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAATTTCTGGATGGTCATaGTTTCGGAAACAGCAAAAG +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTISGWS*FRKQQK
Trigger: CTTTTGCTGTTTCCGAAACAATGACCATCCAGAAAT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGAATGCCTGTCTAGTGTaGAATTTTCATGTTCCCTTA +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQNACLV*NFHVPL
Trigger: TAAGGGAACATGAAAATTCAACACTAGACAGGCATT...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATACCATATAATTTAAGGATACTAGGAGCTGGCAGGTCAGTGGTAAGCGTCCATGGAATATTCTTCTTCTaGAGTGTTAGACTCACTGGA +
Preference number: 5 (lower is better)
Translates to: IPYNLRILGAGRSVVSVHGIFFF*SVRLTG
Trigger: TCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCC...ATGGACGCTTACCACTGACCTGCCAGCTCCTAGTATCCTTAAATTATATGGTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACACGCTTGATTTCATCATaGGATAATTTCAACCTCGAC +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTRLISS*DNFNLD
Trigger: GTCGAGGTTGAAATTATCCAATGATGAAATCAAGCG...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGGTTAGAATTGCCCGCTaGATTTCATCATTGGATAAT +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQVRIAR*ISSLDN
Trigger: ATTATCCAATGATGAAATCAAGCGGGCAATTCTAAC...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATTGTTAGGTCAATGAGGAAGCTCTGGCAATTCTGGTTCTTAACCAGGATCCAGTTGAATCCATATGCATaGCCTCTTTGTCCTTTATTC +
Preference number: 5 (lower is better)
Translates to: IVRSMRKLWQFWFLTRIQLNPYA*PLCPLF
Trigger: GAATAAAGGACAAAGAGGCAATGCATATGGATTCAA...CTGGATCCTGGTTAAGAACCAGAATTGCCAGAGCTTCCTCATTGACCTAACAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp TCACTCACAGAGGAGAGAAGAAATTGCCATTGTTTTGGATCGCAAGGCAGTGTATTGAATCCATATGCATaGCCTCTTTGTCCTTTATTC +
Preference number: 5 (lower is better)
Translates to: SLTEERRNCHCFGSQGSVLNPYA*PLCPLF
Trigger: GAATAAAGGACAAAGAGGCAATGCATATGGATTCAA...TACACTGCCTTGCGATCCAAAACAATGGCAATTTCTTCTCTCCTCTGTGAGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATTGTCAATACTGGATTaGGTATCCGCTATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTLSILD*VSAILL
Trigger: CAACAAGATAGCGGATACCAAATCCAGTATTGACAA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 90 bp GGTAGGCAGAGAACGTTCTTTCTAGGTCTTCAAGGTCTAGAATTTTaGAGACTTTGGTATCATCAATTTCAGTCCATACTGTTCCATCCA +
Preference number: 5 (lower is better)
Translates to: GRQRTFFLGLQGLEF*RLWYHQFQSILFHP
Trigger: TGGATGGAACAGTATGGACTGAAATTGATGATACCAAAGTCTTCAAAATTCTAGACCTTGAAGACCTAGAAAGAACGTTCTCTGCCTACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACAAATGCCTGTCTAGTGTaGAATTTTCATGTTCCCTTA +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTNACLV*NFHVPL
Trigger: TAAGGGAACATGAAAATTCAACACTAGACAGGCATT...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS-3UTR CAA 90 bp ATAGTACGGTTCCTGTCTACTATGCACATTGGTATTCTACCGTCCCTGAAAACATGCCTGCTCTTTCCATaGCTTAACTTCATTTTCATT +
Preference number: 5 (lower is better)
Translates to: IVRFLSTMHIGILPSLKTCLLFP*LNFIFI
Trigger: AATGAAAATGAAGTTAAGCAATGGAAAGAGCAGGCA...TGTTTTCAGGGACGGTAGAATACCAATGTGCATAGTAGACAGGAACCGTACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp CTCACCTTCCGCTCCCTCTCCCGCTGCTCTTTGAGCTaGGCTTCCAGGCGAGCCCGCCGTTCCTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: LTFRSLSRCSLS*ASRRARRSSSS
Trigger: GGAGGAGGAGGAACGGCGGGCTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGAGGGAGCGGAAGGTGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp CCTTCCTCACCTTCCGCTCCCTCTCCCGCTGCTCTTTaGGCTGAGCTTCCAGGCGAGCCCGCCGTTCCTCCT +
Preference number: 6 (lower is better)
Translates to: PSSPSAPSPAAL*AELPGEPAVPP
Trigger: AGGAGGAACGGCGGGCTCGCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGAGGGAGCGGAAGGTGAGGAAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp GGGACTGCTGCACAGACGGCCCTCCTGTTCAGCTCGTaGAGCTGCGCCGTGAGGTCTGCCACCTGCTGCTTA +
Preference number: 6 (lower is better)
Translates to: GTAAQTALLFSS*SCAVRSATCCL
Trigger: TAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGGGCCGTCTGTGCAGCAGTCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp GCTGCACAGACGGCCCTCCTGTTCAGCTCGTGGAGCTaGGCCGTGAGGTCTGCCACCTGCTGCTTAACTTGC +
Preference number: 6 (lower is better)
Translates to: AAQTALLFSSWS*AVRSATCCLTC
Trigger: GCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGGGCCGTCTGTGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp CCTCCTGTTCAGCTCGTGGAGCTGCGCCGTGAGGTCTaGCACCTGCTGCTTAACTTGCTTGTGCTCAGTTGT +
Preference number: 6 (lower is better)
Translates to: PPVQLVELRREV*HLLLNLLVLSC
Trigger: ACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAACAGGAGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp AGCTCGTGGAGCTGCGCCGTGAGGTCTGCCACCTGCTaGTTAACTTGCTTGTGCTCAGTTGTCTCCTTTTCC +
Preference number: 6 (lower is better)
Translates to: SSWSCAVRSATC*LTCLCSVVSFS
Trigger: GGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp CTGGCTGACAACAGACACGAACTTGTCTCCAGGCTGTaGGGGCTGAGACTTCTGATACTCCAGCTCCGTCTC +
Preference number: 6 (lower is better)
Translates to: LADNRHELVSRL*GLRLLILQLRL
Trigger: GAGACGGAGCTGGAGTATCAGAAGTCTCAGCCCCCACAGCCTGGAGACAAGTTCGTGTCTGTTGTCAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp TGTAAGGCATCTGGAGGCAATGGTGCAGAATGGACATaGAGTGGGGGTAGGCTTCGCTGTGGGTTAGCCTCC +
Preference number: 6 (lower is better)
Translates to: CKASGGNGAEWT*SGGRLRCGLAS
Trigger: GGAGGCTAACCCACAGCGAAGCCTACCCCCACTTCATGTCCATTCTGCACCATTGCCTCCAGATGCCTTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp TTCAGCTCGTGGAGCTGCGCCGTGAGGTCTGCCACCTaGTGCTTAACTTGCTTGTGCTCAGTTGTCTCCTTT +
Preference number: 6 (lower is better)
Translates to: FSSWSCAVRSAT*CLTCLCSVVSF
Trigger: AAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTCCACGAGCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp AGTGGGGGTAGGCTTCGCTGTGGGTTAGCCTCCTCCTaGTCAGCTCAAACATCTGAGTGGCGCTTTTTGTGT +
Preference number: 6 (lower is better)
Translates to: SGGRLRCGLASS*SAQTSEWRFLC
Trigger: ACACAAAAAGCGCCACTCAGATGTTTGAGCTGACCAGGAGGAGGCTAACCCACAGCGAAGCCTACCCCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp GAGCTGCGCCGTGAGGTCTGCCACCTGCTGCTTAACTaGCTTGTGCTCAGTTGTCTCCTTTTCCAGCTTCTC +
Preference number: 6 (lower is better)
Translates to: ELRREVCHLLLN*LVLSCLLFQLL
Trigger: GAGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp CGGCTGCTGTCCGTCACCTGGTTGGAAATGCGTTTCCGGTTCCGTTaGAGTTTTGAAAGGTCTTTGTCGAACACCTCTCCTGAGCGCAGC +
Preference number: 6 (lower is better)
Translates to: RLLSVTWLEMRFRFR*SFERSLSNTSPERS
Trigger: GCTGCGCTCAGGAGAGGTGTTCGACAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp TCCACAGGGGGCATGGGCAGCGCCGGCTCCATTGTCTaGAGTGCAAAGTTGCTATCATTCCTAAGCCGATAT +
Preference number: 6 (lower is better)
Translates to: STGGMGSAGSIV*SAKLLSFLSRY
Trigger: ATATCGGCTTAGGAATGATAGCAACTTTGCACTTCAGACAATGGAGCCGGCGCTGCCCATGCCCCCTGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp AGCTGCGCCGTGAGGTCTGCCACCTGCTGCTTAACTTaGTTGTGCTCAGTTGTCTCCTTTTCCAGCTTCTCT +
Preference number: 6 (lower is better)
Translates to: SCAVRSATCCLT*LCSVVSFSSFS
Trigger: AGAGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp TGGTTGGAAATGCGTTTCCGGTTCCGTTTGAGTTTTGAAAGGTCTTaGTCGAACACCTCTCCTGAGCGCAGCGCCGAGACCAGGTCGTCA +
Preference number: 6 (lower is better)
Translates to: WLEMRFRFRLSFERS*SNTSPERSAETRSS
Trigger: TGACGACCTGGTCTCGGCGCTGCGCTCAGGAGAGGTGTTCGACAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp CCGTCTCTACAGCTTTCAGGCCACTCCTCAGGGTGCTaGTCTCCTTGTCCAGCTCAGTCATGTTTACTTTCG +
Preference number: 6 (lower is better)
Translates to: PSLQLSGHSSGC*SPCPAQSCLLS
Trigger: CGAAAGTAAACATGACTGAGCTGGACAAGGAGATCAGCACCCTGAGGAGTGGCCTGAAAGCTGTAGAGACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp ACACCTCCTCAGAGCCAGAGCGAATCGCTTCTACTTTaGGCTTCACTTCTGCCACACGCTCTGCAAACTTCT +
Preference number: 6 (lower is better)
Translates to: TPPQSQSESLLL*ASLLPHALQTS
Trigger: AGAAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCGCTCTGGCTCTGAGGAGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp TTTGTGATTGGTCGCTCCCGGCTGCTGTCCGTCACCTaGTTGGAAATGCGTTTCCGGTTCCGTTTGAGTTTT +
Preference number: 6 (lower is better)
Translates to: FVIGRSRLLSVT*LEMRFRFRLSF
Trigger: AAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCCGGGAGCGACCAATCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp AACACCTCCTCAGAGCCAGAGCGAATCGCTTCTACTTaGGGCTTCACTTCTGCCACACGCTCTGCAAACTTC +
Preference number: 6 (lower is better)
Translates to: NTSSEPERIAST*GFTSATRSANF
Trigger: GAAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCGCTCTGGCTCTGAGGAGGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp CGGCTCCTGAACACCTCCTCAGAGCCAGAGCGAATCGCTTCTACTTaGGGCTTCACTTCTGCCACACGCTCTGCAAACTTCTTTTTGAAG +
Preference number: 6 (lower is better)
Translates to: RLLNTSSEPERIAST*GFTSATRSANFFLK
Trigger: CTTCAAAAAGAAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCGCTCTGGCTCTGAGGAGGTGTTCAGGAGCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp TTGAAGGATTTCAGGGCATTGGTGGGCTGGGGAATATTCTTCTTCTaGAGTGTTAGACTCACTGGAGCACCAGGAGGTGGCAGAACTCCT +
Preference number: 6 (lower is better)
Translates to: LKDFRALVGWGIFFF*SVRLTGAPGGGRTP
Trigger: AGGAGTTCTGCCACCTCCTGGTGCTCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCTGAAATCCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp TTCCTAACATCAGAAATTCATAGCGAAGATGGAGCCTaGAGTCCAAACTCTCCACTCCGGCTCCCTGGCTCA +
Preference number: 6 (lower is better)
Translates to: FLTSEIHSEDGA*SPNSPLRLPGS
Trigger: TGAGCCAGGGAGCCGGAGTGGAGAGTTTGGACTTCAGGCTCCATCTTCGCTATGAATTTCTGATGTTAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp CCGTCACCTGGTTGGAAATGCGTTTCCGGTTCCGTTTaGGTTTTGAAAGGTCTTTGTCGAACACCTCTCCTG +
Preference number: 6 (lower is better)
Translates to: PSPGWKCVSGSV*VLKGLCRTPLL
Trigger: CAGGAGAGGTGTTCGACAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp TTAAGTTTTGTGATTGGTCGCTCCCGGCTGCTGTCCGTCACCTGGTaGGAAATGCGTTTCCGGTTCCGTTTGAGTTTTGAAAGGTCTTTG +
Preference number: 6 (lower is better)
Translates to: LSFVIGRSRLLSVTW*EMRFRFRLSFERSL
Trigger: CAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCCGGGAGCGACCAATCACAAAACTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp TCCTTGTCCAGCTCAGTCATGTTTACTTTCGCTGCTTaGGGAATATCCCGCAACTCTTCGCTTAGGTTGAGG +
Preference number: 6 (lower is better)
Translates to: SLSSSVMFTFAA*GISRNSSLRLR
Trigger: CCTCAACCTAAGCGAAGAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAACATGACTGAGCTGGACAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp GCCAGAGCGAATCGCTTCTACTTTGGGCTTCACTTCTaGCACACGCTCTGCAAACTTCTTTTTGAAGTACAG +
Preference number: 6 (lower is better)
Translates to: ARANRFYFGLHF*HTLCKLLFEVQ
Trigger: CTGTACTTCAAAAAGAAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAAGTAGAAGCGATTCGCTCTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp CTGAAGAAACTGATCAAAGATCCCGAAGAACTCATCTaGCTGGATCTTGCCAGCCTCTTCCCCAAAGTGCTT +
Preference number: 6 (lower is better)
Translates to: LKKLIKDPEELI*LDLASLFPKVL
Trigger: AAGCACTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTTCGGGATCTTTGATCAGTTTCTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp TCCGTCACCTGGTTGGAAATGCGTTTCCGGTTCCGTTaGAGTTTTGAAAGGTCTTTGTCGAACACCTCTCCT +
Preference number: 6 (lower is better)
Translates to: SVTWLEMRFRFR*SFERSLSNTSP
Trigger: AGGAGAGGTGTTCGACAAAGACCTTTCAAAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp TTCCATCCAATTTGTTCTCAGGCAACTTGGACCAGTTaGAGGATTTCAGGGCATTGGTGGGCTGGGGAATAT +
Preference number: 6 (lower is better)
Translates to: FHPICSQATWTS*RISGHWWAGEY
Trigger: ATATTCCCCAGCCCACCAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCCTGAGAACAAATTGGATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp GCTACAGTATATCTGCCACTTTTTCTCTGCTGGAAGTaGAAACATGGCTTCCCTGTGTTTGTCTGTGAGGTC +
Preference number: 6 (lower is better)
Translates to: ATVYLPLFLCWK*KHGFPVFVCEV
Trigger: GACCTCACAGACAAACACAGGGAAGCCATGTTTGCACTTCCAGCAGAGAAAAAGTGGCAGATATACTGTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp GAATCTGGTTACAAACCTCATGGGCTTGGTTCTCAGTaGTGTCTTCAGACTCTCGATGGTTTTACTCCTCTC +
Preference number: 6 (lower is better)
Translates to: ESGYKPHGLGSQ*CLQTLDGFTPL
Trigger: GAGAGGAGTAAAACCATCGAGAGTCTGAAGACAGCACTGAGAACCAAGCCCATGAGGTTTGTAACCAGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp AGAGGTGTGGAGTCGGGATCCTGCCCTTTGTCATTCTaGATAACTATCTGCTGTATGATTCTGTCTAACAGC +
Preference number: 6 (lower is better)
Translates to: RGVESGSCPLSF*ITICCMILSNS
Trigger: GCTGTTAGACAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp TTGGACCAGTTGAAGGATTTCAGGGCATTGGTGGGCTaGGGAATATTCTTCTTCTTGAGTGTTAGACTCACT +
Preference number: 6 (lower is better)
Translates to: LDQLKDFRALVG*GIFFFLSVRLT
Trigger: AGTGAGTCTAACACTCAAGAAGAAGAATATTCCCCAGCCCACCAATGCCCTGAAATCCTTCAACTGGTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp AAGTTTTCCAGAGGTGTGGAGTCGGGATCCTGCCCTTaGTCATTCTGGATAACTATCTGCTGTATGATTCTG +
Preference number: 6 (lower is better)
Translates to: KFSRGVESGSCP*SFWITICCMIL
Trigger: CAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCTGGAAAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp GCATCACATTCTCTCTCTTTCTTCTCCAGCTTCTGTTGTAGCTCATaGTGCTCTTTCCTCATCTTCTCTGCCTGCTCTTTCCATTGCTTA +
Preference number: 6 (lower is better)
Translates to: ASHSLSFFSSFCCSS*CSFLIFSACSFHCL
Trigger: TAAGCAATGGAAAGAGCAGGCAGAGAAGATGAGGAAAGAGCACAATGAGCTACAACAGAAGCTGGAGAAGAAAGAGAGAGAATGTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp TCGCTTTTCTCAGGAACGAATTTCAAAAGCTGTTCTAACATGTCCTaGGGCAGATCCTCCTGTTCATCCATTGTTAGAATTGCCCGCTTG +
Preference number: 6 (lower is better)
Translates to: SLFSGTNFKSCSNMS*GRSSCSSIVRIARL
Trigger: CAAGCGGGCAATTCTAACAATGGATGAACAGGAGGATCTGCCCAAGGACATGTTAGAACAGCTTTTGAAATTCGTTCCTGAGAAAAGCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp ATATTAAAGTTTTCCAGAGGTGTGGAGTCGGGATCCTaGCCTTTGTCATTCTGGATAACTATCTGCTGTATG +
Preference number: 6 (lower is better)
Translates to: ILKFSRGVESGS*PLSFWITICCM
Trigger: CATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCTGGAAAACTTTAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS GCA 72 bp CATCATTGGATAATTTCAACCTCGACAGAAGGATGTTaGAATTCTGAGCTCTCCGACCATCAATCACTGACA +
Preference number: 6 (lower is better)
Translates to: HHWIISTSTEGC*NSELSDHQSLT
Trigger: TGTCAGTGATTGATGGTCGGAGAGCTCAGAATTGCAACATCCTTCTGTCGAGGTTGAAATTATCCAATGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp TTGATATTAAAGTTTTCCAGAGGTGTGGAGTCGGGATCCTGCCCTTaGTCATTCTGGATAACTATCTGCTGTATGATTCTGTCTAACAGC +
Preference number: 6 (lower is better)
Translates to: LILKFSRGVESGSCP*SFWITICCMILSNS
Trigger: GCTGTTAGACAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAGGATCCCGACTCCACACCTCTGGAAAACTTTAATATCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp TTCTTGTCAATACTGGATTTGGTATCCGCTATCTTGTaGAGGCTGGAGATCTTGAATCCATATGCATTGCCT +
Preference number: 6 (lower is better)
Translates to: FLSILDLVSAIL*RLEILNPYALP
Trigger: AGGCAATGCATATGGATTCAAGATCTCCAGCCTCAACAAGATAGCGGATACCAAATCCAGTATTGACAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp GATCCTCCTGTTCATCCATTGTTAGAATTGCCCGCTTaGTTTCATCATTGGATAATTTCAACCTCGACAGAA +
Preference number: 6 (lower is better)
Translates to: DPPVHPLLELPA*FHHWIISTSTE
Trigger: TTCTGTCGAGGTTGAAATTATCCAATGATGAAATCAAGCGGGCAATTCTAACAATGGATGAACAGGAGGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp TCAGGAACGAATTTCAAAAGCTGTTCTAACATGTCCTaGGGCAGATCCTCCTGTTCATCCATTGTTAGAATT +
Preference number: 6 (lower is better)
Translates to: SGTNFKSCSNMS*GRSSCSSIVRI
Trigger: AATTCTAACAATGGATGAACAGGAGGATCTGCCCAAGGACATGTTAGAACAGCTTTTGAAATTCGTTCCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp ACTTCATTTTCATTAACCAACATTCTTACGACGTTCTaGATATTAAAGTTTTCCAGAGGTGTGGAGTCGGGA +
Preference number: 6 (lower is better)
Translates to: TSFSLTNILTTF*ILKFSRGVESG
Trigger: TCCCGACTCCACACCTCTGGAAAACTTTAATATCAAGAACGTCGTAAGAATGTTGGTTAATGAAAATGAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 72 bp CTTTCTAGGTCTTCAAGGTCTAGAATTTTGAAGACTTaGGTATCATCAATTTCAGTCCATACTGTTCCATCC +
Preference number: 6 (lower is better)
Translates to: LSRSSRSRILKT*VSSISVHTVPS
Trigger: GGATGGAACAGTATGGACTGAAATTGATGATACCAAAGTCTTCAAAATTCTAGACCTTGAAGACCTAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CAA 90 bp GAGAACGTTCTTTCTAGGTCTTCAAGGTCTAGAATTTTGAAGACTTaGGTATCATCAATTTCAGTCCATACTGTTCCATCCAATTTGTTC +
Preference number: 6 (lower is better)
Translates to: ENVLSRSSRSRILKT*VSSISVHTVPSNLF
Trigger: GAACAAATTGGATGGAACAGTATGGACTGAAATTGATGATACCAAAGTCTTCAAAATTCTAGACCTTGAAGACCTAGAAAGAACGTTCTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS TCA 72 bp AGAACGTTCTTTCTAGGTCTTCAAGGTCTAGAATTTTaGAGACTTTGGTATCATCAATTTCAGTCCATACTG +
Preference number: 6 (lower is better)
Translates to: RTFFLGLQGLEF*RLWYHQFQSIL
Trigger: CAGTATGGACTGAAATTGATGATACCAAAGTCTTCAAAATTCTAGACCTTGAAGACCTAGAAAGAACGTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp TTGCTATCATTCCTAAGCCGATATGTGATTTCTGGATaGTCATTGTTTCGGAAACAGCAAAAGATAAATGAA +
Preference number: 6 (lower is better)
Translates to: LLSFLSRYVISG*SLFRKQQKINE
Trigger: TTCATTTATCTTTTGCTGTTTCCGAAACAATGACCATCCAGAAATCACATATCGGCTTAGGAATGATAGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2
CDS CCA 72 bp AAAGTTGCTATCATTCCTAAGCCGATATGTGATTTCTaGATGGTCATTGTTTCGGAAACAGCAAAAGATAAA +
Preference number: 6 (lower is better)
Translates to: KVAIIPKPICDF*MVIVSETAKDK
Trigger: TTTATCTTTTGCTGTTTCCGAAACAATGACCATCCAGAAATCACATATCGGCTTAGGAATGATAGCAACTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085299.4
ENSMUST00000221317.2
ENSMUST00000223272.2