Pregenerated sensors for CYTL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062329Ensembl transcript IDs: ENSMUST00000073554.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGACACCTAGGAGCTGAGCTGAGCTTCCAACCTGTGCACAAAGCATaGTCAGAGGTAGGACCCTCACTGGTGTTTCAGAAGCTAGAGACA | + |
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Preference number: 1 (lower is better) Translates to: RHLGAELSFQPVHKA*SEVGPSLVFQKLET Trigger: TGTCTCTAGCTTCTGAAACACCAGTGAGGGTCCTACCTCTGAGCATGCTTTGTGCACAGGTTGGAAGCTCAGCTCAGCTCCTAGGTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR-3UTR CCA 90 bp | GCTGAGCTGAGCTTCCAACCTGTGCACAAAGCATGCTCAGAGGTAGGACCCTCACCAGCTTCAGACCTCTaGGTTGTTCTTCTGGTCCAC | + |
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Preference number: 2 (lower is better) Translates to: AELSFQPVHKACSEVGPSPASDL*VVLLVH Trigger: GTGGACCAGAAGAACAACCCAGAGGTCTGAAGCTGG...TGAGGGTCCTACCTCTGAGCATGCTTTGTGCACAGGTTGGAAGCTCAGCTCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR-3UTR GCA 90 bp | AGGTTTATTTGGTTTTCATCACCCTTCAGCGAAAGGGTGGCTCGTTTACACTACGCACTTTCCTCTTTGTaGCTCTTACATTCCAATGAG | + |
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Preference number: 2 (lower is better) Translates to: RFIWFSSPFSERVARLHYALSSL*LLHSNE Trigger: CTCATTGGAATGTAAGAGGCACAAAGAGGAAAGTGC...GTAGTGTAAACGAGCCACCCTTTCGCTGAAGGGTGATGAAAACCAAATAAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR-3UTR TCA 90 bp | TATTTGGTTTTCATCACCCTTCAGCGAAAGGGTGGCTCGTTTACACTACATAAAACAGTCACAAAGGCATaGGATTTTGCTGTTCCTAAG | + |
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Preference number: 2 (lower is better) Translates to: YLVFITLQRKGGSFTLHKTVTKA*DFAVPK Trigger: CTTAGGAACAGCAAAATCTCATGCCTTTGTGACTGT...TTTATGTAGTGTAAACGAGCCACCCTTTCGCTGAAGGGTGATGAAAACCAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR GCA 72 bp | GGAGCTGAGCTGAGCTTCCAACCTGTGCACAAAGCATaGTCAGAGGTAGGACCCTCACTGGTGTTTCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: GAELSFQPVHKA*SEVGPSLVFQK Trigger: CTTCTGAAACACCAGTGAGGGTCCTACCTCTGAGCATGCTTTGTGCACAGGTTGGAAGCTCAGCTCAGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR TCA 72 bp | TTGTGCCTCTTACATTCCAATGAGACACCTAGGAGCTaGGCTGAGCTTCCAACCTGTGCACAAAGCATGCTC | + |
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Preference number: 3 (lower is better) Translates to: LCLLHSNETPRS*AELPTCAQSML Trigger: GAGCATGCTTTGTGCACAGGTTGGAAGCTCAGCTCAGCTCCTAGGTGTCTCATTGGAATGTAAGAGGCACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR TCA 90 bp | GAGGTAGGACCCTCACTGGTGTTTCAGAAGCTAGAGACATGTGGCAGGTCTAACTCTGGAAGTCTGCCATaGTCTCACGGCTCAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: EVGPSLVFQKLETCGRSNSGSLP*SHGSGS Trigger: TGACCCTGAGCCGTGAGATCATGGCAGACTTCCAGA...GTTAGACCTGCCACATGTCTCTAGCTTCTGAAACACCAGTGAGGGTCCTACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR GCA 90 bp | TCAGAGGTAGGACCCTCACTGGTGTTTCAGAAGCTAGAGACATGTGGCAGGTCTCAGGCTCTGGAAGTCTaGCATGATCTCACGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SEVGPSLVFQKLETCGRSQALEV*HDLTAQ Trigger: CTGAGCCGTGAGATCATGGCAGACTTCCAGAGCCTG...AGACCTGCCACATGTCTCTAGCTTCTGAAACACCAGTGAGGGTCCTACCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR CCA 90 bp | GAGCTTCCAACCTGTGCACAAAGCATGCTCAGAGGTAGGACCCTCACTGGTGTTGAAGCCTGCAGGCTCTaGAAGTCTGCCATGATCTCA | + |
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Preference number: 4 (lower is better) Translates to: ELPTCAQSMLRGRTLTGVEACRL*KSAMIS Trigger: TGAGATCATGGCAGACTTCCAGAGCCTGCAGGCTTC...AACACCAGTGAGGGTCCTACCTCTGAGCATGCTTTGTGCACAGGTTGGAAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR TCA 90 bp | TCACTGGTGTTTCAGAAGCTAGAGACATGTGGCAGGTCTAACAGTGGCACTAAAGGAATCCTCAGGCTCTaGAGCCTGCAGGCTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SLVFQKLETCGRSNSGTKGILRL*SLQALE Trigger: TTCCAGAGCCTGCAGGCTTCAGAGCCTGAGGATTCC...TTTAGTGCCACTGTTAGACCTGCCACATGTCTCTAGCTTCTGAAACACCAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR TCA 90 bp | ATGCTCAGAGGTAGGACCCTCACTGGTGTTTCAGAAGCTAGAGACATGTGGCAGTGCAGAAGGAGTTCATaGTGGTATACAGCTTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: MLRGRTLTGVSEARDMWQCRRSS*WYTASA Trigger: TGCGGAAGCTGTATACCATCATGAACTCCTTCTGCA...CTGCCACATGTCTCTAGCTTCTGAAACACCAGTGAGGGTCCTACCTCTGAGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR GCA 90 bp | AGGTTTATTTGGTTTTCATCACCCTTCAGCGAAAGGGTGGCTCGTTTACACTACTCAGGCTCTGAAGCCTaGAGGCTCTGGAAGTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: RFIWFSSPFSERVARLHYSGSEA*RLWKSA Trigger: GGCAGACTTCCAGAGCCTGCAGGCTTCAGAGCCTGA...GTAGTGTAAACGAGCCACCCTTTCGCTGAAGGGTGATGAAAACCAAATAAACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR GCA 90 bp | AAGGTGCTTGCTCTCCAAAGCGAAGCCAGTGTGCACTTTCCTCTTTGTGCCTCTGGTCTTCTAAGGCACTaGAGTCATCTGAGAGGAATA | + |
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Preference number: 4 (lower is better) Translates to: KVLALQSEASVHFPLCASGLLRH*SHLRGI Trigger: TATTCCTCTCAGATGACTGCAGTGCCTTAGAAGACC...AGAGGCACAAAGAGGAAAGTGCACACTGGCTTCGCTTTGGAGAGCAAGCACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS-3UTR CCA 90 bp | AGAGGTTTATTTGGTTTTCATCACCCTTCAGCGAAAGGGTGGCTCGTTTACACTCGAAGTCTCTCAGCTTaGCCAGCACACAGTAGTTAT | + |
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Preference number: 4 (lower is better) Translates to: RGLFGFHHPSAKGWLVYTRSLSA*PAHSSY Trigger: ATAACTACTGTGTGCTGGCCAAGCTGAGAGACTTCG...AGTGTAAACGAGCCACCCTTTCGCTGAAGGGTGATGAAAACCAAATAAACCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| 3UTR CAA 72 bp | ATTAGTTCATTAAAACAGTCACAAAGGCATGAGATTTaGCTGTTCCTAAGGTGCTTGCTCTCCAAAGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: ISSLKQSQRHEI*LFLRCLLSKAK Trigger: CTTCGCTTTGGAGAGCAAGCACCTTAGGAACAGCAAAATCTCATGCCTTTGTGACTGTTTTAATGAACTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS GCA 90 bp | AGTCTGGAGGACCCGTGGCCTCGGGAATTGGGTCTTCTAAGGCACTaGAGTCATCTGAGAGGAATACCAAGTCCCGCCTGCAGAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: SLEDPWPRELGLLRH*SHLRGIPSPACRRS Trigger: ACTCCTTCTGCAGGCGGGACTTGGTATTCCTCTCAGATGACTGCAGTGCCTTAGAAGACCCAATTCCCGAGGCCACGGGTCCTCCAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS CCA 90 bp | CGGCCATCTTCCAGCACTGAGGAGAAGCCACGAAGTCTCTCAGCTTaGCCAGCACACAGTAGTTATGGATGTCCAGGTAAAGCCGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: RPSSSTEEKPRSLSA*PAHSSYGCPGKAGA Trigger: TGCCCCGGCTTTACCTGGACATCCATAACTACTGTGTGCTGGCCAAGCTGAGAGACTTCGTGGCTTCTCCTCAGTGCTGGAAGATGGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS TCA 90 bp | AGTCATCTGAGAGGAATACCAAGTCCCGCCTGCAGAAGGAGTTCATaGTGGTATACAGCTTCCGCACTCTGTCCTTCAGAGTGTCCACTT | + |
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Preference number: 5 (lower is better) Translates to: SHLRGIPSPACRRSS*WYTASALCPSECPL Trigger: AAGTGGACACTCTGAAGGACAGAGTGCGGAAGCTGTATACCATCATGAACTCCTTCTGCAGGCGGGACTTGGTATTCCTCTCAGATGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS CCA 72 bp | TCTCACGGCTCAGGGTCAGCATCCGAGAGTAGCAGGTaGGGGGCGCGGACTGTACTGCCAGAGGCCAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: SHGSGSASESSR*GARTVLPEARL Trigger: TAGCCTGGCCTCTGGCAGTACAGTCCGCGCCCCCCACCTGCTACTCTCGGATGCTGACCCTGAGCCGTGAGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS GCA 72 bp | GACCCGTGGCCTCGGGAATTGGGTCTTCTAAGGCACTaGAGTCATCTGAGAGGAATACCAAGTCCCGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: DPWPRELGLLRH*SHLRGIPSPAC Trigger: GCAGGCGGGACTTGGTATTCCTCTCAGATGACTGCAGTGCCTTAGAAGACCCAATTCCCGAGGCCACGGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS CAA 72 bp | AGCTCTGCCAGTCTGGAGGACCCGTGGCCTCGGGAATaGGGTCTTCTAAGGCACTGCAGTCATCTGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SSASLEDPWPRE*GLLRHCSHLRG Trigger: TCCTCTCAGATGACTGCAGTGCCTTAGAAGACCCAATTCCCGAGGCCACGGGTCCTCCAGACTGGCAGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS GCA 72 bp | AAGTACCTCACACAGGAATCCTCAGGCTCTGAAGCCTaGAGGCTCTGGAAGTCTGCCATGATCTCACGGCTC | + |
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Preference number: 6 (lower is better) Translates to: KYLTQESSGSEA*RLWKSAMISRL Trigger: GAGCCGTGAGATCATGGCAGACTTCCAGAGCCTGCAGGCTTCAGAGCCTGAGGATTCCTGTGTGAGGTACTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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| CDS CCA 72 bp | TCCAGCACTGAGGAGAAGCCACGAAGTCTCTCAGCTTaGCCAGCACACAGTAGTTATGGATGTCCAGGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SSTEEKPRSLSA*PAHSSYGCPGK Trigger: TTTACCTGGACATCCATAACTACTGTGTGCTGGCCAAGCTGAGAGACTTCGTGGCTTCTCCTCAGTGCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073554.4 |
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