Pregenerated sensors for CYSRT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036731Ensembl transcript IDs: ENSMUST00000043379.5, ENSMUST00000114356.3, ENSMUST00000186719.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCAACATGGCTAGTGGCTGGAACCCTATTCCAGAAGGCTACAGCTaGACGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCT | + |
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Preference number: 1 (lower is better) Translates to: ANMASGWNPIPEGYS*TLVDRLPCSGQEMA Trigger: AGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCACTAGCCATGTTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR-3UTR GCA 90 bp | ACCCTATTCCAGAAGGCTACAGCTGAACGCTGGTGGACAGGCTCCCCTGCTCAGAGCAGGAACCTGGGCTaGACAGCCCTGGAGGTTCAA | + |
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Preference number: 2 (lower is better) Translates to: TLFQKATAERWWTGSPAQSRNLG*TALEVQ Trigger: TTGAACCTCCAGGGCTGTGCAGCCCAGGTTCCTGCT...CTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR-3UTR TCA 90 bp | TTGTTGCCAACATGGCTAGTGGCTGGAACCCTATTCCAGAAGGCTACAGCTGAAGCAACACTTTGGCATTaGGCAGGAACCTGGGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: LLPTWLVAGTLFQKATAEATLWH*AGTWAA Trigger: TGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGC...TTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCACTAGCCATGTTGGCAACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR TCA 72 bp | GCTAGTGGCTGGAACCCTATTCCAGAAGGCTACAGCTaGACGCTGGTGGACAGGCTCCCCTGCTCAGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: ASGWNPIPEGYS*TLVDRLPCSGQ Trigger: CTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCACTAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR CCA 72 bp | CGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATaGCTGATGCTCATGACAACGGCTGCTCCTGATGTC | + |
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Preference number: 3 (lower is better) Translates to: RWWTGSPAQGRK*LMLMTTAAPDV Trigger: GACATCAGGAGCAGCCGTTGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR CCA 72 bp | GCTGGAACCCTATTCCAGAAGGCTACAGCTGAACGCTaGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGG | + |
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Preference number: 3 (lower is better) Translates to: AGTLFQKATAER*WTGSPAQGRKW Trigger: CCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR-3UTR CAA 90 bp | GAACGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGAGCAACACTTTGGCATaGAGCAGGAACCTGGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: ERWWTGSPAQGRKWLMLMSNTLA*SRNLGC Trigger: GCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCT...CATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| 3UTR-3UTR CAA 90 bp | ACCCTATTCCAGAAGGCTACAGCTGAACGCTGGTGGACAGGCTCCCCTGCTCAGATGTCCAGCAACACTTaGGCATTGAGCAGGAACCTG | + |
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Preference number: 3 (lower is better) Translates to: TLFQKATAERWWTGSPAQMSSNT*ALSRNL Trigger: CAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACAT...CTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR GCA 90 bp | TGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACAACGGCTGGAACCTCCTCTAACTaGTGCCCCAGGTCAGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: WTGSPAQGRKWLMLMTTAGTSSN*CPRSER Trigger: GCGCTCTGACCTGGGGCAGCAGTTAGAGGAGGTTCC...AGCCGTTGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | CGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACAGAGGCCCACTGGCTCTaGGATACATGTTCCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RWWTGSPAQGRKWLMLMTEAHWL*DTCSCR Trigger: CCTGCAGGAACATGTATCCCAGAGCCAGTGGGCCTC...TGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | CGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACACAGCAGCAGCAGTGGTaGGCAATGTCATCACCACGC | + |
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Preference number: 4 (lower is better) Translates to: RWWTGSPAQGRKWLMLMTQQQQW*AMSSPR Trigger: GCGTGGTGATGACATTGCCCACCACTGCTGCTGCTG...TGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | GACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACAACGGCTGCGGGCAGCAGCAGCAGTaGTGGGCAATGTCATCACCA | + |
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Preference number: 4 (lower is better) Translates to: DRLPCSGQEMADAHDNGCGQQQQ*WAMSSP Trigger: TGGTGATGACATTGCCCACCACTGCTGCTGCTGCCC...GCAGCCGTTGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | ACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACAACGGCTGCTCAGAAGCGAGGACAGTaGCAGCAGGAGCAGCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: TGSPAQGRKWLMLMTTAAQKRGQ*QQEQQG Trigger: CCCTTGCTGCTCCTGCTGCCACTGTCCTCGCTTCTG...AGCAGCCGTTGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR TCA 90 bp | GCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCATAGGGATTGCAGGGTaGCTGCCAGGTCTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: APDVQQHFGIEQEPGLHSIGIAG*LPGLLA Trigger: GGCCAGCAGACCTGGCAGTCACCCTGCAATCCCTAT...GCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR TCA 90 bp | ACGGCTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGATAGGGATTGCAGGGTaGCTGCCAGGTCTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: TAAPDVQQHFGIEQEPGLIGIAG*LPGLLA Trigger: GGCCAGCAGACCTGGCAGTCACCCTGCAATCCCTAT...CAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAGCCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR GCA 90 bp | GCTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACGGAACCTCCTCTAACTaGTGCCCCAGGTCAGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: AAPDVQQHFGIEQEPGLHGTSSN*CPRSER Trigger: GCGCTCTGACCTGGGGCAGCAGTTAGAGGAGGTTCC...GTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR CCA 90 bp | CCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCCCTCAGAAGCGAGGACAGTaGCAGCAGGAGCAGCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: PDVQQHFGIEQEPGLHSPQKRGQ*QQEQQG Trigger: CCCTTGCTGCTCCTGCTGCCACTGTCCTCGCTTCTG...AGGGCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR GCA 90 bp | ACAGCTGAACGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGTGGGATACATGTTCCTaGAGGCAGAGGCTGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: TAERWWTGSPAQGRKWLMWDTCS*RQRLSL Trigger: GAGACTCAGCCTCTGCCTGCAGGAACATGTATCCCA...CATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | GCTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACGAGGCCCACTGGCTCTaGGATACATGTTCCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AAPDVQQHFGIEQEPGLHEAHWL*DTCSCR Trigger: CCTGCAGGAACATGTATCCCAGAGCCAGTGGGCCTC...GTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR CCA 90 bp | CCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCCCTCAGCAGCAGCAGTGGTaGGCAATGTCATCACCACGC | + |
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Preference number: 4 (lower is better) Translates to: PDVQQHFGIEQEPGLHSPQQQQW*AMSSPR Trigger: GCGTGGTGATGACATTGCCCACCACTGCTGCTGCTG...AGGGCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR CCA 90 bp | TTGCCAACATGGCTAGTGGCTGGAACCCTATTCCAGAAGGCTACAGCTGAACGCGACTGCCAGGTCTGCTaGCCGTGCTCAGGAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LPTWLVAGTLFQKATAERDCQVC*PCSGAV Trigger: TACTGCTCCTGAGCACGGCCAGCAGACCTGGCAGTC...GCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCACTAGCCATGTTGGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | CTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGGGCAGCAGCAGCAGTaGTGGGCAATGTCATCACCA | + |
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Preference number: 4 (lower is better) Translates to: LLLMSSNTLALSRNLGCTGQQQQ*WAMSSP Trigger: TGGTGATGACATTGCCCACCACTGCTGCTGCTGCCC...TGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR TCA 90 bp | ACGGCTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGGAGCCCGAGGAATGCTaGTGTGGGCATATGGATTCT | + |
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Preference number: 4 (lower is better) Translates to: TAAPDVQQHFGIEQEPGLEPEEC*CGHMDS Trigger: AGAATCCATATGCCCACATCAGCATTCCTCGGGCTC...CAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAGCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR TCA 90 bp | ACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGATGCTCATGACAACGGCTGCTATAACACAACAGCTGTaGCAACGGCAGAAGCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: TGSPAQGRKWLMLMTTAAITQQL*QRQKRG Trigger: TCCTCGCTTCTGCCGTTGTCACAGCTGTTGTGTTAT...AGCAGCCGTTGTCATGAGCATCAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR GCA 90 bp | CTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCCCTGTGGGATACATGTTCCTaGAGGCAGAGGCTGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LMSSNTLALSRNLGCTALWDTCS*RQRLSL Trigger: GAGACTCAGCCTCTGCCTGCAGGAACATGTATCCCA...CAGGGCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR TCA 90 bp | TTGCCAACATGGCTAGTGGCTGGAACCCTATTCCAGAAGGCTACAGCTGAACGCGAGCCCGAGGAATGCTaGTGTGGGCATATGGATTCT | + |
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Preference number: 4 (lower is better) Translates to: LPTWLVAGTLFQKATAEREPEEC*CGHMDS Trigger: AGAATCCATATGCCCACATCAGCATTCCTCGGGCTC...GCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCACTAGCCATGTTGGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | GTGGCTGGAACCCTATTCCAGAAGGCTACAGCTGAACGCTGGTGGACAGGCTCCGCTGATGTGGGCATATaGATTCTTCACAACCATCTC | + |
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Preference number: 4 (lower is better) Translates to: VAGTLFQKATAERWWTGSADVGI*ILHNHL Trigger: GAGATGGTTGTGAAGAATCCATATGCCCACATCAGC...GGAGCCTGTCCACCAGCGTTCAGCTGTAGCCTTCTGGAATAGGGTTCCAGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS-3UTR CCA 90 bp | CTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCCCTGGCTGATGTGGGCATATaGATTCTTCACAACCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LMSSNTLALSRNLGCTALADVGI*ILHNHL Trigger: GAGATGGTTGTGAAGAATCCATATGCCCACATCAGC...CAGGGCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS CCA 90 bp | GCAGCAGCAGCAGTGGTGGGCAATGTCATCACCACGCCCTACAGGTaGCAGGCCAGCATAAGTCAGTCCCGATGGACGTTGCCCACTGCT | + |
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Preference number: 5 (lower is better) Translates to: AAAAVVGNVITTPYR*QASISQSRWTLPTA Trigger: AGCAGTGGGCAACGTCCATCGGGACTGACTTATGCTGGCCTGCCACCTGTAGGGCGTGGTGATGACATTGCCCACCACTGCTGCTGCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR CAA 90 bp | GCTACAGCTGAACGCTGGTGGACAGGCTCCCCTGCTCAGGGCAGGAAATGGCTGGTACCCTTGATGCCCTaGATACCTTTGGGCCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: ATAERWWTGSPAQGRKWLVPLMP*IPLGPG Trigger: CCCTGGGCCCAAAGGTATCAAGGGCATCAAGGGTAC...CAGCCATTTCCTGCCCTGAGCAGGGGAGCCTGTCCACCAGCGTTCAGCTGTAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043379.5 |
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| CDS GCA 90 bp | CAGCATAAGTCAGTCCCGATGGACGTTGCCCACTGCTATAGGGATTaGAGGGTGACTGCCAGGTCTGCTGGCCGTGCTCAGGAGCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: QHKSVPMDVAHCYRD*RVTARSAGRAQEQY Trigger: GTACTGCTCCTGAGCACGGCCAGCAGACCTGGCAGTCACCCTGCAATCCCTATAGCAGTGGGCAACGTCCATCGGGACTGACTTATGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS-3UTR CAA 90 bp | GCTGCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACGTACCCTTGATGCCCTaGATACCTTTGGGCCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: AAPDVQQHFGIEQEPGLHVPLMP*IPLGPG Trigger: CCCTGGGCCCAAAGGTATCAAGGGCATCAAGGGTAC...GTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS TCA 90 bp | CTAACTGCTGCCCCAGGTCAGAGCGCAGGTGAGCCCGAGGAATGCTaGTGTGGGCATATGGATTCTTCACAACCATCTCATGGGGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LTAAPGQSAGEPEEC*CGHMDSSQPSHGGP Trigger: TGGACCCCCATGAGATGGTTGTGAAGAATCCATATGCCCACATCAGCATTCCTCGGGCTCACCTGCGCTCTGACCTGGGGCAGCAGTTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS-3UTR CAA 90 bp | CTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCCCTGATGCCCTTGATACCTTaGGGCCCAGGGGCTTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: LMSSNTLALSRNLGCTALMPLIP*GPGASV Trigger: TACTGAAGCCCCTGGGCCCAAAGGTATCAAGGGCAT...CAGGGCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS-3UTR CAA 90 bp | GCTCCTGATGTCCAGCAACACTTTGGCATTGAGCAGGAACCTGGGCTGCACAGCATGCCCTTGATACCTTaGGGCCCAGGGGCTTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: APDVQQHFGIEQEPGLHSMPLIP*GPGASV Trigger: TACTGAAGCCCCTGGGCCCAAAGGTATCAAGGGCAT...GCTGTGCAGCCCAGGTTCCTGCTCAATGCCAAAGTGTTGCTGGACATCAGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS TCA 90 bp | GAAGAAGGAACCTCCTCTAACTGCTGCCCCAGGTCAGAGCGCAGGTaGGCCCGAGGAATGCTGATGTGGGCATATGGATTCTTCACAACC | + |
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Preference number: 5 (lower is better) Translates to: EEGTSSNCCPRSERR*ARGMLMWAYGFFTT Trigger: GGTTGTGAAGAATCCATATGCCCACATCAGCATTCCTCGGGCTCACCTGCGCTCTGACCTGGGGCAGCAGTTAGAGGAGGTTCCTTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS TCA 90 bp | AAGAGGCCCACTGGCTCTGGGATACATGTTCCTGCAGGCAGAGGCTaGGTCTCAGAGGAGGAAGATGAAGAAGGAACCTCCTCTAACTGC | + |
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Preference number: 5 (lower is better) Translates to: KRPTGSGIHVPAGRG*VSEEEDEEGTSSNC Trigger: GCAGTTAGAGGAGGTTCCTTCTTCATCTTCCTCCTCTGAGACTCAGCCTCTGCCTGCAGGAACATGTATCCCAGAGCCAGTGGGCCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS CCA 72 bp | CAGTGGCAGCAGGAGCAGCAAGGGCAGCAGCAGCAGTaGTGGGCAATGTCATCACCACGCCCTACAGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: QWQQEQQGQQQQ*WAMSSPRPTGG Trigger: GCCACCTGTAGGGCGTGGTGATGACATTGCCCACCACTGCTGCTGCTGCCCTTGCTGCTCCTGCTGCCACTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS GCA 72 bp | TCAGTCCCGATGGACGTTGCCCACTGCTATAGGGATTaGAGGGTGACTGCCAGGTCTGCTGGCCGTGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: SVPMDVAHCYRD*RVTARSAGRAQ Trigger: CTGAGCACGGCCAGCAGACCTGGCAGTCACCCTGCAATCCCTATAGCAGTGGGCAACGTCCATCGGGACTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS CCA 72 bp | GCAGTGGTGGGCAATGTCATCACCACGCCCTACAGGTaGCAGGCCAGCATAAGTCAGTCCCGATGGACGTTG | + |
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Preference number: 6 (lower is better) Translates to: AVVGNVITTPYR*QASISQSRWTL Trigger: CAACGTCCATCGGGACTGACTTATGCTGGCCTGCCACCTGTAGGGCGTGGTGATGACATTGCCCACCACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043379.5 ENSMUST00000186719.2 |
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| CDS CAA 90 bp | CAGGGTGACTGCCAGGTCTGCTGGCCGTGCTCAGGAGCAGTACCCTaGATGCCCTTGATACCTTTGGGCCCAGGGGCTTCAGTAGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: QGDCQVCWPCSGAVP*MPLIPLGPGASVVC Trigger: ACAAACTACTGAAGCCCCTGGGCCCAAAGGTATCAAGGGCATCAAGGGTACTGCTCCTGAGCACGGCCAGCAGACCTGGCAGTCACCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS TCA 72 bp | ACCTCCTCTAACTGCTGCCCCAGGTCAGAGCGCAGGTaGGCCCGAGGAATGCTGATGTGGGCATATGGATTC | + |
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Preference number: 6 (lower is better) Translates to: TSSNCCPRSERR*ARGMLMWAYGF Trigger: GAATCCATATGCCCACATCAGCATTCCTCGGGCTCACCTGCGCTCTGACCTGGGGCAGCAGTTAGAGGAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS CAA 72 bp | TGCTGGCCGTGCTCAGGAGCAGTACCCTTGATGCCCTaGATACCTTTGGGCCCAGGGGCTTCAGTAGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: CWPCSGAVPLMP*IPLGPGASVVC Trigger: ACAAACTACTGAAGCCCCTGGGCCCAAAGGTATCAAGGGCATCAAGGGTACTGCTCCTGAGCACGGCCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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| CDS TCA 72 bp | GCCCCAGGTCAGAGCGCAGGTGAGCCCGAGGAATGCTaGTGTGGGCATATGGATTCTTCACAACCATCTCAT | + |
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Preference number: 6 (lower is better) Translates to: APGQSAGEPEEC*CGHMDSSQPSH Trigger: ATGAGATGGTTGTGAAGAATCCATATGCCCACATCAGCATTCCTCGGGCTCACCTGCGCTCTGACCTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043379.5 ENSMUST00000114356.3 ENSMUST00000186719.2 |
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