Pregenerated sensors for CYSLTR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052821Ensembl transcript IDs: ENSMUST00000064892.4, ENSMUST00000113480.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGATTGAACCACTGTGAGCAAGAACACCATTCTTTTGCCGGTGCTTaGGTCAAGGGCAGAAGAGAATTAGAGACAAACTGGCCTTTGATC | + |
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Preference number: 1 (lower is better) Translates to: GLNHCEQEHHSFAGA*VKGRRELETNWPLI Trigger: GATCAAAGGCCAGTTTGTCTCTAATTCTCTTCTGCCCTTGACTCAAGCACCGGCAAAAGAATGGTGTTCTTGCTCACAGTGGTTCAATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR GCA 90 bp | AGGTTAAAAGAGATCAGGTTCACATGCAGACATCTTGGCTTCCAGTaGCATGCTCTCCCACCACAAAGCAGAAATGTAGCAAATGAGACC | + |
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Preference number: 1 (lower is better) Translates to: RLKEIRFTCRHLGFQ*HALPPQSRNVANET Trigger: GGTCTCATTTGCTACATTTCTGCTTTGTGGTGGGAGAGCATGGCACTGGAAGCCAAGATGTCTGCATGTGAACCTGATCTCTTTTAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CCA 90 bp | TTCAATATTTTAAGTGACTTTTATGGCATTCTTTGGAGTAAATCATaGGTGTGTGTAATGCTCATCATATACCGGGAGAACATGGCCCAC | + |
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Preference number: 1 (lower is better) Translates to: FNILSDFYGILWSKS*VCVMLIIYRENMAH Trigger: GTGGGCCATGTTCTCCCGGTATATGATGAGCATTACACACACCCATGATTTACTCCAAAGAATGCCATAAAAGTCACTTAAAATATTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR GCA 90 bp | AAGAACAATACATTCATTGTGAGTTTGCAGGTGACTGAAGTTTTGTaGCATATCTATATGGTACACGTAGGTACATATGTGAGTGGAACA | + |
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Preference number: 1 (lower is better) Translates to: KNNTFIVSLQVTEVL*HIYMVHVGTYVSGT Trigger: TGTTCCACTCACATATGTACCTACGTGTACCATATAGATATGGCACAAAACTTCAGTCACCTGCAAACTCACAATGAATGTATTGTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CCA 90 bp | CTTATTTTTCCATATTGTAAATTTCATGCAGCCTGTGGAGCTATTTaGCTGAATATTGGTCTGTTCTGGTACTTGAACATTCTCTTCTGG | + |
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Preference number: 1 (lower is better) Translates to: LIFPYCKFHAACGAI*LNIGLFWYLNILFW Trigger: CCAGAAGAGAATGTTCAAGTACCAGAACAGACCAATATTCAGCCAAATAGCTCCACAGGCTGCATGAAATTTACAATATGGAAAAATAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR GCA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGGAGATCAGGTTCACATaGAGACATCTTGGCTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGEIRFT*RHLGFQ Trigger: CTGGAAGCCAAGATGTCTGCATGTGAACCTGATCTC...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGTTTTCTGAAGGGAAGTaGAAGAAGAGTGGATCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGFSEGK*KKSGSR Trigger: CCTAGATCCACTCTTCTTCCACTTCCCTTCAGAAAA...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTACATAGTATGTTTGGTTaGGATCCCTGGGAGACATGC | + |
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Preference number: 2 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLHSMFG*DPWETC Trigger: GCATGTCTCCCAGGGATCTCAACCAAACATACTATG...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGAGACAAACTGGCCTTTaGTCAGATTTATCTTCCTTA | + |
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Preference number: 2 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGRQTGL*SDLSSL Trigger: TAAGGAAGATAAATCTGATCAAAGGCCAGTTTGTCT...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAGGGATTGAACCACTGTaGGCAAGAACACCATTCTTT | + |
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Preference number: 2 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLGIEPL*ARTPFF Trigger: AAAGAATGGTGTTCTTGCTCACAGTGGTTCAATCCC...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTATCCAGAGTTCAATCTTaGTTCTGTAGCTTGCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLSRVQS*FCSLLA Trigger: TGCCAGCAAGCTACAGAACCAAGATTGAACTCTGGA...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCTCTCATCTGATGGCATaGATGCAAAGGGAGATGTTA | + |
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Preference number: 2 (lower is better) Translates to: CLFLGRFLSYLVDKRVYASHLMA*MQREML Trigger: TAACATCTCCCTTTGCATGCATGCCATCAGATGAGA...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAATCTCCAGGTCTCATCTaGTGGCATGCATGCAAAGGG | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKSPGLI*WHACKG Trigger: CCCTTTGCATGCATGCCATCAGATGAGACCTGGAGA...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR GCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAGTGACTGAAGTTTTGTaGCATATCTATATGGTACAC | + |
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Preference number: 2 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLVTEVL*HIYMVH Trigger: GTGTACCATATAGATATGGCACAAAACTTCAGTCAC...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATCACATGCAGACATCTTaGCTTCCAGTGCCATGCTCT | + |
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Preference number: 2 (lower is better) Translates to: AGKMRIVMICTLQGICIYHMQTS*LPVPCS Trigger: AGAGCATGGCACTGGAAGCCAAGATGTCTGCATGTG...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 90 bp | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCATTaGTCAATCAAGTATCTCTTATCTGCTTGTCGCAAGAGCATAATA | + |
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Preference number: 2 (lower is better) Translates to: LSLSLSLSLSLSLSH*SIKYLLSACRKSII Trigger: TATTATGCTCTTGCGACAAGCAGATAAGAGATACTTGATTGACAAATGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCAGGTACATATGTGAGTaGAACAGCAAATACAAACAA | + |
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Preference number: 2 (lower is better) Translates to: CLFLGRFLSYLVDKRVYARYICE*NSKYKQ Trigger: TTGTTTGTATTTGCTGTTCCACTCACATATGTACCT...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATGTCTGTTCTGGTACTTaGACATTCTCTTCTGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: AGKMRIVMICTLQGICIYVCSGT*TFSSGR Trigger: TCTTCCAGAAGAGAATGTTCAAGTACCAGAACAGAC...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAGCCTGTGGAGCTATTTaGCTGAATATTGGTCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKACGAI*LNIGLF Trigger: GAACAGACCAATATTCAGCCAAATAGCTCCACAGGC...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 90 bp | AGAAAGAACAATACATTCATTGTGAGTTTGCAGGTGACTGAAGTTTaGTGCCATATCTATATGGTACACGTAGGTACATATGTGAGTGGA | + |
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Preference number: 2 (lower is better) Translates to: RKNNTFIVSLQVTEV*CHIYMVHVGTYVSG Trigger: TCCACTCACATATGTACCTACGTGTACCATATAGATATGGCACAAAACTTCAGTCACCTGCAAACTCACAATGAATGTATTGTTCTTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATCAGAAATGTAGCAAATaGGACCTGATGTCTTTTGAC | + |
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Preference number: 2 (lower is better) Translates to: AGKMRIVMICTLQGICIYQKCSK*DLMSFD Trigger: GTCAAAAGACATCAGGTCTCATTTGCTACATTTCTG...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAGAGTTTGCAGGTGACTaGAGTTTTGTGCCATATCTA | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKEFAGD*SFVPYL Trigger: TAGATATGGCACAAAACTTCAGTCACCTGCAAACTC...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATTTCTTCTGTCATATATaGGAATGCCAGTTGCCTTAC | + |
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Preference number: 2 (lower is better) Translates to: AGKMRIVMICTLQGICIYFFCHI*ECQLPY Trigger: GTAAGGCAACTGGCATTCCCATATATGACAGAAGAA...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAATATCTAACCACCTTTaGGTCCTTCAAATGGCCATA | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKISNHL*VLQMAI Trigger: TATGGCCATTTGAAGGACTCAAAGGTGGTTAGATAT...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAGTAGCAAATGAGACCTaGTGTCTTTTGACAAATATG | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKVANET*CLLTNM Trigger: CATATTTGTCAAAAGACATCAGGTCTCATTTGCTAC...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATTATTTGGCTGAATATTaGTCTGTTCTGGTACTTGAA | + |
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Preference number: 2 (lower is better) Translates to: AGKMRIVMICTLQGICIYYLAEY*SVLVLE Trigger: TTCAAGTACCAGAACAGACCAATATTCAGCCAAATA...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR GCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAATGTCATATATGGGAATaGCAGTTGCCTTACTTATTA | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKCHIWE*QLPYLL Trigger: TAATAAGTAAGGCAACTGGCATTCCCATATATGACA...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAGAATTAGAGACAAACTaGCCTTTGATCAGATTTATC | + |
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Preference number: 2 (lower is better) Translates to: CNLKELIILHRTLPFRRKELETN*PLIRFI Trigger: GATAAATCTGATCAAAGGCCAGTTTGTCTCTAATTC...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR GCA 72 bp | GAGATCAGGTTCACATGCAGACATCTTGGCTTCCAGTaGCATGCTCTCCCACCACAAAGCAGAAATGTAGCA | + |
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Preference number: 3 (lower is better) Translates to: EIRFTCRHLGFQ*HALPPQSRNVA Trigger: TGCTACATTTCTGCTTTGTGGTGGGAGAGCATGGCACTGGAAGCCAAGATGTCTGCATGTGAACCTGATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CCA 72 bp | CAGGTTAAAAGAGATCAGGTTCACATGCAGACATCTTaGCTTCCAGTGCCATGCTCTCCCACCACAAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: QVKRDQVHMQTS*LPVPCSPTTKQ Trigger: CTGCTTTGTGGTGGGAGAGCATGGCACTGGAAGCCAAGATGTCTGCATGTGAACCTGATCTCTTTTAACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR TCA 72 bp | CTTTACCTAGCTAGTCAGTACTACAAAGGAAACGGCTaGCCAAATGTACGTCCCGAGTCATCTCCAGGTCTC | + |
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Preference number: 3 (lower is better) Translates to: LYLASQYYKGNG*PNVRPESSPGL Trigger: GAGACCTGGAGATGACTCGGGACGTACATTTGGTCAGCCGTTTCCTTTGTAGTACTGACTAGCTAGGTAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTATTCTTTTGCCGGTGCTaGAGTCAAGGGCAGAAGAGA | + |
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Preference number: 3 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLFFCRC*SQGQKR Trigger: TCTCTTCTGCCCTTGACTCAAGCACCGGCAAAAGAA...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGCAGGTGACTGAAGTTTaGTGCCATATCTATATGGTA | + |
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Preference number: 3 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGQVTEV*CHIYMV Trigger: TACCATATAGATATGGCACAAAACTTCAGTCACCTG...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR TCA 72 bp | CACTGTGAGCAAGAACACCATTCTTTTGCCGGTGCTTaGGTCAAGGGCAGAAGAGAATTAGAGACAAACTGG | + |
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Preference number: 3 (lower is better) Translates to: HCEQEHHSFAGA*VKGRRELETNW Trigger: CCAGTTTGTCTCTAATTCTCTTCTGCCCTTGACTCAAGCACCGGCAAAAGAATGGTGTTCTTGCTCACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR TCA 72 bp | TTTGTGGGACTCCTAACAGTGGGAGTGTGGATGTTCTaGCTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: FVGLLTVGVWMF*LFCLFLGRFLS Trigger: AGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCCACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATTCACATGCAGACATCTaGGCTTCCAGTGCCATGCTC | + |
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Preference number: 3 (lower is better) Translates to: AGKMRIVMICTLQGICIYSHADI*ASSAML Trigger: GAGCATGGCACTGGAAGCCAAGATGTCTGCATGTGA...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAGGAATTTCTTTTTCATaGTTCTGCACTGTAGATGAG | + |
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Preference number: 3 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLGISFS*FCTVDE Trigger: CTCATCTACAGTGCAGAACAATGAAAAAGAAATTCC...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCACATTCATTGTGAGTTaGCAGGTGACTGAAGTTTTG | + |
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Preference number: 3 (lower is better) Translates to: CLFLGRFLSYLVDKRVYATFIVS*QVTEVL Trigger: CAAAACTTCAGTCACCTGCAAACTCACAATGAATGT...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CCA 72 bp | ATTTCATGCAGCCTGTGGAGCTATTTGGCTGAATATTaGTCTGTTCTGGTACTTGAACATTCTCTTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: ISCSLWSYLAEY*SVLVLEHSLLE Trigger: TTCCAGAAGAGAATGTTCAAGTACCAGAACAGACCAATATTCAGCCAAATAGCTCCACAGGCTGCATGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAGGTCTGTTCTGGTACTaGAACATTCTCTTCTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: CNLKELIILHRTLPFRRKGLFWY*NILFWK Trigger: CTTCCAGAAGAGAATGTTCAAGTACCAGAACAGACC...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CCA 72 bp | TTAAGTGACTTTTATGGCATTCTTTGGAGTAAATCATaGGTGTGTGTAATGCTCATCATATACCGGGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: LSDFYGILWSKS*VCVMLIIYREN Trigger: GTTCTCCCGGTATATGATGAGCATTACACACACCCATGATTTACTCCAAAGAATGCCATAAAAGTCACTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATGAGACAAACTGGCCTTaGATCAGATTTATCTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: AGKMRIVMICTLQGICIYETNWP*IRFIFL Trigger: AAGGAAGATAAATCTGATCAAAGGCCAGTTTGTCTC...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR TCA 72 bp | AAAGAACAATACATTCATTGTGAGTTTGCAGGTGACTaGAGTTTTGTGCCATATCTATATGGTACACGTAGG | + |
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Preference number: 3 (lower is better) Translates to: KEQYIHCEFAGD*SFVPYLYGTRR Trigger: CCTACGTGTACCATATAGATATGGCACAAAACTTCAGTCACCTGCAAACTCACAATGAATGTATTGTTCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR TCA 72 bp | CTCCCACCACAAAGCAGAAATGTAGCAAATGAGACCTaGTGTCTTTTGACAAATATGTTTGATATTTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: LPPQSRNVANET*CLLTNMFDICF Trigger: GAAACAAATATCAAACATATTTGTCAAAAGACATCAGGTCTCATTTGCTACATTTCTGCTTTGTGGTGGGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR GCA 72 bp | CTGATGAATTTTGACTTCTTCTGTCATATATGGGAATaGCAGTTGCCTTACTTATTAAGGAAGGATTATAGG | + |
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Preference number: 3 (lower is better) Translates to: LMNFDFFCHIWE*QLPYLLRKDYR Trigger: CCTATAATCCTTCCTTAATAAGTAAGGCAACTGGCATTCCCATATATGACAGAAGAAGTCAAAATTCATCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR GCA 72 bp | TTCTCTCTCTCATTTGTCAATCAAGTATCTCTTATCTaGTTGTCGCAAGAGCATAATATATCTGTCCTATTA | + |
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Preference number: 3 (lower is better) Translates to: FSLSFVNQVSLI*LSQEHNISVLL Trigger: TAATAGGACAGATATATTATGCTCTTGCGACAAGCAGATAAGAGATACTTGATTGACAAATGAGAGAGAGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 72 bp | CCGCATAGGTCTGAGCTAGGTGCTCTGCATAATACATaGTGGTTGTGTAGCTTGGTCTTTTTGTGGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: PHRSELGALHNT*WLCSLVFLWDS Trigger: GGAGTCCCACAAAAAGACCAAGCTACACAACCACAATGTATTATGCAGAGCACCTAGCTCAGACCTATGCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR CCA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGAGCCTTCCTACGACTTaGCATGTTTTTCTTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGSLPTT*HVFLHC Trigger: ACAATGAAGAAAAACATGCCAAGTCGTAGGAAGGCT...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR TCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTACTAGAGATAAGGTTATaGCCACTGACTTCTGCATCC | + |
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Preference number: 4 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLLEIRL*PLTSAS Trigger: GGATGCAGAAGTCAGTGGTCATAACCTTATCTCTAG...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAGACTGGAAAGACAATTaGAACACACCGGAAAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLDWKDN*NTPEKA Trigger: AGCTTTTTCCGGTGTGTTGCAATTGTCTTTCCAGTC...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR CCA 90 bp | GGGACTCCTAACAGTGGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACCAAATTAATGTTCTaGACTGGAAAGACAATTGCA | + |
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Preference number: 4 (lower is better) Translates to: GTPNSGSVDVLTLLPVLGTKLMF*TGKTIA Trigger: TGCAATTGTCTTTCCAGTCCAGAACATTAATTTGGT...CCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCCACTGTTAGGAGTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCAGAGCACAAAGCTATTaGCAAAGAAACCCACAACAG | + |
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Preference number: 4 (lower is better) Translates to: CLFLGRFLSYLVDKRVYARAQSY*QRNPQQ Trigger: CTGTTGTGGGTTTCTTTGGCAATAGCTTTGTGCTCT...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCATGACCACTGACTTCTaGATCCTAAGGACAGAATCA | + |
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Preference number: 4 (lower is better) Translates to: CLFLGRFLSYLVDKRVYAMTTDF*ILRTES Trigger: TGATTCTGTCCTTAGGATGCAGAAGTCAGTGGTCAT...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 72 bp | GGAGCTATTTGGCTGAATATTGGTCTGTTCTGGTACTaGAACATTCTCTTCTGGAAGACAGGGCACTACTTT | + |
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Preference number: 4 (lower is better) Translates to: GAIWLNIGLFWY*NILFWKTGHYF Trigger: AAAGTAGTGCCCTGTCTTCCAGAAGAGAATGTTCAAGTACCAGAACAGACCAATATTCAGCCAAATAGCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR TCA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCCATGGTATGTTTTTATaGGGACATAGAGCACAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CLFLGRFLSYLVDKRVYAHGMFL*GHRAQS Trigger: GCTTTGTGCTCTATGTCCTCATAAAAACATACCATG...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR TCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAGTATACTTGGAAGGCTaGTTTCTCATGGTATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLVYLEG*FLMVCF Trigger: AAAACATACCATGAGAAATCAGCCTTCCAAGTATAC...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 72 bp | TCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCATTaGTCAATCAAGTATCTCTTATCTGCTTGTCGCAAG | + |
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Preference number: 4 (lower is better) Translates to: SLSLSLSLSLSH*SIKYLLSACRK Trigger: CTTGCGACAAGCAGATAAGAGATACTTGATTGACAAATGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAATTCTCCAGGAATGTCTaGTTGGTGCCTTGGAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CNLKELIILHRTLPFRRKFSRNV*LVPWRY Trigger: GTACCTCCAAGGCACCAAGCAGACATTCCTGGAGAA...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | GGGAGTGTGGATGTTCTGACTCTTTTGCCTGTTCTTGGGACGCTTTTTGTCTTAAAATCCAAATTCCAATaGAAACGAACCTGGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: GSVDVLTLLPVLGTLFVLKSKFQ*KRTWLF Trigger: AAAAAGCCAGGTTCGTTTGCATTGGAATTTGGATTT...TAAGACAAAAAGCGTCCCAAGAACAGGCAAAAGAGTCAGAACATCCACACTCCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR GCA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATCACCAAAGAGCCACTTaGCTTTGTGAACATAATAGA | + |
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Preference number: 4 (lower is better) Translates to: AGKMRIVMICTLQGICIYHQRAT*LCEHNR Trigger: TCTATTATGTTCACAAAGGCAAGTGGCTCTTTGGTG...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| 3UTR CAA 72 bp | CACATGGAGAAACTGGAGAAAGTAGTAAGAAGTAAGTaGTATGGCATAGGCTATAAAGACATAATTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: HMEKLEKVVRSK*YGIGYKDIIQE Trigger: TTCTTGAATTATGTCTTTATAGCCTATGCCATACAACTTACTTCTTACTACTTTCTCCAGTTTCTCCATGTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR CCA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAATTAATCATGTATACTTaGAAGGCTGATTTCTCATGG | + |
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Preference number: 4 (lower is better) Translates to: CNLKELIILHRTLPFRRKLIMYT*KADFSW Trigger: CCATGAGAAATCAGCCTTCCAAGTATACATGATTAA...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS GCA 90 bp | CAACAATTTGATGCAGCTAGAGATAAGGTTATGACCACTGACTTCTaGATCCTAAGGACAGAATCACAGGGTCTAGTTTCACTGTGTAAA | + |
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Preference number: 5 (lower is better) Translates to: QQFDAARDKVMTTDF*ILRTESQGLVSLCK Trigger: TTTACACAGTGAAACTAGACCCTGTGATTCTGTCCTTAGGATGCAGAAGTCAGTGGTCATAACCTTATCTCTAGCTGCATCAAATTGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064892.4 ENSMUST00000113480.2 |
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| CDS-3UTR CAA 90 bp | TGCCTGTTCTTGGGACGCTTTTTGTCTTACTTGGTTGATAAGAGGGTTTATGCCTTCGGAATTCATCAATaGTGTCATGACACGTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: CLFLGRFLSYLVDKRVYAFGIHQ*CHDTCY Trigger: ATAACACGTGTCATGACACAATTGATGAATTCCGAA...GGCATAAACCCTCTTATCAACCAAGTAAGACAAAAAGCGTCCCAAGAACAGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR CAA 90 bp | GCTGGCAAAATGAGGATAGTAATGATATGTACTCTGCAGGGCATTTGTATTTATGATCAAAGCAACAATTaGATGCAGCTAGAGATAAGG | + |
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Preference number: 5 (lower is better) Translates to: AGKMRIVMICTLQGICIYDQSNN*MQLEIR Trigger: CCTTATCTCTAGCTGCATCAAATTGTTGCTTTGATC...ATAAATACAAATGCCCTGCAGAGTACATATCATTACTATCCTCATTTTGCCAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS-3UTR CAA 90 bp | TGTAACCTCAAGGAATTGATAATTCTACACAGAACACTTCCCTTTAGGAGAAAAAAGGTGGATAGTTCGTaGAATATGATATGGCATGAA | + |
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Preference number: 5 (lower is better) Translates to: CNLKELIILHRTLPFRRKKVDSS*NMIWHE Trigger: TTCATGCCATATCATATTCAACGAACTATCCACCTT...TTTTCTCCTAAAGGGAAGTGTTCTGTGTAGAATTATCAATTCCTTGAGGTTACA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000113480.2 |
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| CDS GCA 72 bp | GATGCAGCTAGAGATAAGGTTATGACCACTGACTTCTaGATCCTAAGGACAGAATCACAGGGTCTAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: DAARDKVMTTDF*ILRTESQGLVS Trigger: TGAAACTAGACCCTGTGATTCTGTCCTTAGGATGCAGAAGTCAGTGGTCATAACCTTATCTCTAGCTGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064892.4 ENSMUST00000113480.2 |
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| CDS GCA 72 bp | TGTAACCAAATTAATGTTCTGGACTGGAAAGACAATTaGAACACACCGGAAAAAGCTCATGGCTGTCATAAA | + |
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Preference number: 6 (lower is better) Translates to: CNQINVLDWKDN*NTPEKAHGCHK Trigger: TTTATGACAGCCATGAGCTTTTTCCGGTGTGTTGCAATTGTCTTTCCAGTCCAGAACATTAATTTGGTTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064892.4 ENSMUST00000113480.2 |
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