Pregenerated sensors for CYRIB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022378Ensembl transcript IDs: ENSMUST00000063838.11, ENSMUST00000164532.3, ENSMUST00000228226.2, ENSMUST00000228908.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGAGGCCAGAGAGGTCAACAGGAACTTTACCATCAAGTGCCGTGTaGACCACAATCTGGCGCTCTGATGGAGAGGGTCCAGAGGGCAGC | + |
|
Preference number: 1 (lower is better) Translates to: RRPERSTGTLPSSAV*TTIWRSDGEGPEGS Trigger: GCTGCCCTCTGGACCCTCTCCATCAGAGCGCCAGATTGTGGTGCACACGGCACTTGATGGTAAAGTTCCTGTTGACCTCTCTGGCCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CCA 90 bp | GCTCTGATGGAGAGGGTCCAGAGGGCAGCCTGTGATCATCTCCCATaGTTAAGCACTTTAACTGTGTCCCACCTCAGGTCACCTTGTCAT | + |
|
Preference number: 1 (lower is better) Translates to: ALMERVQRAACDHLP*LSTLTVSHLRSPCH Trigger: ATGACAAGGTGACCTGAGGTGGGACACAGTTAAAGTGCTTAACCATGGGAGATGATCACAGGCTGCCCTCTGGACCCTCTCCATCAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR GCA 90 bp | AAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTaGCTTCGAGACACCATGTGCTTCCTGTCACCGCCCTTTCATTCC | + |
|
Preference number: 1 (lower is better) Translates to: KYSYCSLSSNVKGSS*LRDTMCFLSPPFHS Trigger: GGAATGAAAGGGCGGTGACAGGAAGCACATGGTGTCTCGAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR GCA 90 bp | GTGAGATCTCGGACTTTCATTTATTTCCTCTGGAAGTACTCTTATTaGTCACTCTCCTCCAATGTCAAGGGCTCCTCGTGCCTTCGAGAC | + |
|
Preference number: 1 (lower is better) Translates to: VRSRTFIYFLWKYSY*SLSSNVKGSSCLRD Trigger: GTCTCGAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCCAGAGGAAATAAATGAAAGTCCGAGATCTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CCA 90 bp | CACTTCCTACGACCAGTGAGATCTCGGACTTTCATTTATTTCCTCTaGAAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCC | + |
|
Preference number: 1 (lower is better) Translates to: HFLRPVRSRTFIYFL*KYSYCSLSSNVKGS Trigger: GGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCCAGAGGAAATAAATGAAAGTCCGAGATCTCACTGGTCGTAGGAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CCA 90 bp | AGAAACTCTGATGGAAAGTGTTCCATGACCTTCTTCTGGCTTCTGTaGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCC | + |
|
Preference number: 1 (lower is better) Translates to: RNSDGKCSMTFFWLL*SRKFQDMMLPLPLS Trigger: GGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGCCAGAAGAAGGTCATGGAACACTTTCCATCAGAGTTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 90 bp | TTTGCCAACTTAATCTTCAACATGCAGAGTGTGAACCATGTTACCTaGAAGGCCACAGCAGGATTACTACATCTACTTCATTTATCAGTC | + |
|
Preference number: 1 (lower is better) Translates to: FANLIFNMQSVNHVT*KATAGLLHLLHLSV Trigger: GACTGATAAATGAAGTAGATGTAGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAGATTAAGTTGGCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | GCTAGGACCCACTCTCATCCAGGACGATGCCATACATACATAGGTCCTTACATTGTGTGCACCACAATCTaGCGCTCTGATGGAGAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: ARTHSHPGRCHTYIGPYIVCTTI*RSDGEG Trigger: ACCCTCTCCATCAGAGCGCCAGATTGTGGTGCACAC...AATGTAAGGACCTATGTATGTATGGCATCGTCCTGGATGAGAGTGGGTCCTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | GCAGGAGGCCAGAGAGGTCAACAGGAACTTTACCATCAAGTGCCGTGTGCACCACATTTTGGCTGCACATaGAAAAGCGGCAGTAGAAAA | + |
|
Preference number: 2 (lower is better) Translates to: AGGQRGQQELYHQVPCAPHFGCT*KSGSRK Trigger: TTTTCTACTGCCGCTTTTTCATGTGCAGCCAAAATG...TGGTGCACACGGCACTTGATGGTAAAGTTCCTGTTGACCTCTCTGGCCTCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | CTTCAACATGCAGAGTGTGAACCATGTTACCTGAAAGGCCACAGCAGGATTACTCCAGAGGGCAGCCTGTaGTCATCTCCCATGGTTAAG | + |
|
Preference number: 2 (lower is better) Translates to: LQHAECEPCYLKGHSRITPEGSL*SSPMVK Trigger: CTTAACCATGGGAGATGATCACAGGCTGCCCTCTGG...AGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | GCTAGGACCCACTCTCATCCAGGACGATGCCATACATACATAGGTCCTTACATTACTGTAGAAGCCTCCTaGAAGACATGGCCAATGTCA | + |
|
Preference number: 2 (lower is better) Translates to: ARTHSHPGRCHTYIGPYITVEAS*KTWPMS Trigger: TGACATTGGCCATGTCTTCCAGGAGGCTTCTACAGT...AATGTAAGGACCTATGTATGTATGGCATCGTCCTGGATGAGAGTGGGTCCTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | GGAAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTGCCTTCTTAGATGGCCTGTTTTaGAAGGACAAAATCCCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: GSTLIAHSPPMSRAPRAFLDGLF*KDKIPF Trigger: GAAAGGGATTTTGTCCTTTCAAAACAGGCCATCTAA...GAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | CTTCAACATGCAGAGTGTGAACCATGTTACCTGAAAGGCCACAGCAGGATTACTGCCTCCTGGAAGACATaGCCAATGTCATCTAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: LQHAECEPCYLKGHSRITASWKT*PMSSKW Trigger: CCATTTAGATGACATTGGCCATGTCTTCCAGGAGGC...AGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR GCA 90 bp | GACACTGAAGGAATAAGACATGGCTCTTCTCAGGTTCTCAGTCTCTGCAGCATCCAATGCGTAATTAGCTaGCTTAGATGGCCTGTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: DTEGIRHGSSQVLSLCSIQCVIS*LRWPVL Trigger: CAAAACAGGCCATCTAAGGCAGCTAATTACGCATTG...GATGCTGCAGAGACTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR GCA 90 bp | CTTCAACATGCAGAGTGTGAACCATGTTACCTGAAAGGCCACAGCAGGATTACTGAGACCTCAATGCAATaGGTAATTAGCTGCCTTAGA | + |
|
Preference number: 2 (lower is better) Translates to: LQHAECEPCYLKGHSRITETSMQ*VISCLR Trigger: TCTAAGGCAGCTAATTACGCATTGCATTGAGGTCTC...AGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | GACACTGAAGGAATAAGACATGGCTCTTCTCAGGTTCTCAGTCTCTGCAGCATCATTAGCTGCCTTAGATaGCCTGTTTTGAAAGGACAA | + |
|
Preference number: 2 (lower is better) Translates to: DTEGIRHGSSQVLSLCSIISCLR*PVLKGQ Trigger: TTGTCCTTTCAAAACAGGCCATCTAAGGCAGCTAAT...GATGCTGCAGAGACTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | GACACTGAAGGAATAAGACATGGCTCTTCTCAGGTTCTCAGTCTCTGCAGCATCTTCTTCTGGCTTCTGTaGTCCAGGAAATTTCAAGAT | + |
|
Preference number: 2 (lower is better) Translates to: DTEGIRHGSSQVLSLCSIFFWLL*SRKFQD Trigger: ATCTTGAAATTTCCTGGACCACAGAAGCCAGAAGAA...GATGCTGCAGAGACTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTGCAGCTTCTCTCAACTaGGACACATTTCTTTGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: FISPHSLHSITHLAALHIAASLN*DTFLCL Trigger: AAGGCAAAGAAATGTGTCTCAGTTGAGAGAAGCTGC...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTGATGACAGCTGGTGTTaGTCAGACAAACATGAAGGA | + |
|
Preference number: 2 (lower is better) Translates to: FISPHSLHSITHLAALHIDDSWC*SDKHEG Trigger: TCCTTCATGTTTGTCTGACCAACACCAGCTGTCATC...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | TTACATTCACCTGAAAATGCCCTTCTTCAAAATGAGGCCATATGTACAGGTTCCACGGGTTTCCTTCTATaGCTACGCTCACAAAGATTA | + |
|
Preference number: 2 (lower is better) Translates to: LHSPENALLQNEAICTGSTGFLL*LRSQRL Trigger: TAATCTTTGTGAGCGTAGTCATAGAAGGAAACCCGT...GGAACCTGTACATATGGCCTCATTTTGAAGAAGGGCATTTTCAGGTGAATGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTTGCAAGATCCTTGCTTaGGACACTGAAGGAATAAGA | + |
|
Preference number: 2 (lower is better) Translates to: FISPHSLHSITHLAALHICKILA*DTEGIR Trigger: TCTTATTCCTTCAGTGTCTCAAGCAAGGATCTTGCA...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR GCA 90 bp | TTACATTCACCTGAAAATGCCCTTCTTCAAAATGAGGCCATATGTACAGGTTCCTGGAAGTACTCTTATTaGTCACTCTCCTCCAATGTC | + |
|
Preference number: 2 (lower is better) Translates to: LHSPENALLQNEAICTGSWKYSY*SLSSNV Trigger: GACATTGGAGGAGAGTGAGCAATAAGAGTACTTCCA...GGAACCTGTACATATGGCCTCATTTTGAAGAAGGGCATTTTCAGGTGAATGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | GCTTCTGTGGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCCTCAAGAATAAGGAGATTTaGTGGCATTCACTAAGACTG | + |
|
Preference number: 2 (lower is better) Translates to: ASVVQEISRYDVTFASILKNKEI*WHSLRL Trigger: CAGTCTTAGTGAATGCCATCAAATCTCCTTATTCTT...GAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR TCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTTATCAGGCTGTTTTGTaGGACAGTTGTATTCAATGC | + |
|
Preference number: 2 (lower is better) Translates to: FISPHSLHSITHLAALHIYQAVL*DSCIQC Trigger: GCATTGAATACAACTGTCTCACAAAACAGCCTGATA...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CAA 90 bp | ACAACTTTCAAGCAGCTTCTCTCAACTGAGACACATTTCTTTGCCTaGGGCTTTATGATTTTAAATTGTAACTCATGTCACTTCCTACGA | + |
|
Preference number: 2 (lower is better) Translates to: TTFKQLLSTETHFFA*GFMILNCNSCHFLR Trigger: TCGTAGGAAGTGACATGAGTTACAATTTAAAATCATAAAGCCCAAGGCAAAGAAATGTGTCTCAGTTGAGAGAAGCTGCTTGAAAGTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR GCA 72 bp | TATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTaGCTTCGAGACACCATGTGCTTCCTGTCACCGCCC | + |
|
Preference number: 3 (lower is better) Translates to: YCSLSSNVKGSS*LRDTMCFLSPP Trigger: GGGCGGTGACAGGAAGCACATGGTGTCTCGAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | TTCTTAATTCACAGGTTGTGTAGGTCCAGAGGGAGGTaGATTGGCCCACCGACTGGGCTACTGACCCCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: FLIHRLCRSRGR*IGPPTGLLTPR Trigger: CCTAGGGGTCAGTAGCCCAGTCGGTGGGCCAATTCACCTCCCTCTGGACCTACACAACCTGTGAATTAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | GACACCATGTGCTTCCTGTCACCGCCCTTTCATTCCTaGAACCGAGAGCTGAGAAAGTACGGGTTTCCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: DTMCFLSPPFHS*NRELRKYGFPS Trigger: AGAAGGAAACCCGTACTTTCTCAGCTCTCGGTTTCAGGAATGAAAGGGCGGTGACAGGAAGCACATGGTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR GCA 72 bp | GTCAGTAGGGCTAGGACCCACTCTCATCCAGGACGATaGCATACATACATAGGTCCTTACATTCACCTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: VSRARTHSHPGR*HTYIGPYIHLK Trigger: TTTCAGGTGAATGTAAGGACCTATGTATGTATGGCATCGTCCTGGATGAGAGTGGGTCCTAGCCCTACTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CAA 90 bp | GACACTGAAGGAATAAGACATGGCTCTTCTCAGGTTCTCAGTCTCTGCAGCATCCTGGAAGTACTCTTATaGCTCACTCTCCTCCAATGT | + |
|
Preference number: 3 (lower is better) Translates to: DTEGIRHGSSQVLSLCSILEVLL*LTLLQC Trigger: ACATTGGAGGAGAGTGAGCAATAAGAGTACTTCCAG...GATGCTGCAGAGACTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | TCTTCTGGCTTCTGTGGTCCAGGAAATTTCAAGATATaGTGTTACCTTTGCCTCTATCCTCCCAGGACCTCC | + |
|
Preference number: 3 (lower is better) Translates to: SSGFCGPGNFKI*CYLCLYPPRTS Trigger: GGAGGTCCTGGGAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGCCAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | CGCTTCCTTCTAGAAACTCTGATGGAAAGTGTTCCATaGCCTTCTTCTGGCTTCTGTGGTCCAGGAAATTTC | + |
|
Preference number: 3 (lower is better) Translates to: RFLLETLMESVP*PSSGFCGPGNF Trigger: GAAATTTCCTGGACCACAGAAGCCAGAAGAAGGTCATGGAACACTTTCCATCAGAGTTTCTAGAAGGAAGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | TATTTAGGTACTATGCAAGATCCTTGCTTGAGACACTaGAGGAATAAGACATGGCTCTTCTCAGGTTCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: YLGTMQDPCLRH*RNKTWLFSGSQ Trigger: CTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTCTCAAGCAAGGATCTTGCATAGTACCTAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CCA 72 bp | ACCCATTATAACACTGTAGAAGCCTCCTGGAAGACATaGCCAATGTCATCTAAATGGTTTTTGGAGGAAGTA | + |
|
Preference number: 3 (lower is better) Translates to: THYNTVEASWKT*PMSSKWFLEEV Trigger: TACTTCCTCCAAAAACCATTTAGATGACATTGGCCATGTCTTCCAGGAGGCTTCTACAGTGTTATAATGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CCA 72 bp | TTATCAGTCCTCACTCACTCCATTCAATTACTCACTTaGCAGCTCTCCATATTTAGGTACTATGCAAGATCC | + |
|
Preference number: 3 (lower is better) Translates to: LSVLTHSIQLLT*QLSIFRYYARS Trigger: GGATCTTGCATAGTACCTAAATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR-3UTR CAA 90 bp | ATCAGTTACGAAGCAACACCACACGGAACAATCTGTAAACAGCAAGTAGTTAAGCTTAGATGGCCTGTTTaGAAAGGACAAAATCCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: ISYEATPHGTICKQQVVKLRWPV*KGQNPF Trigger: AAAGGGATTTTGTCCTTTCAAAACAGGCCATCTAAG...CTTAACTACTTGCTGTTTACAGATTGTTCCGTGTGGTGTTGCTTCGTAACTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | GCTGAATTCGACAACTTTCAAGCAGCTTCTCTCAACTaGGACACATTTCTTTGCCTTGGGCTTTATGATTTT | + |
|
Preference number: 3 (lower is better) Translates to: AEFDNFQAASLN*DTFLCLGLYDF Trigger: AAAATCATAAAGCCCAAGGCAAAGAAATGTGTCTCAGTTGAGAGAAGCTGCTTGAAAGTTGTCGAATTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR TCA 72 bp | TTAATCTTCAACATGCAGAGTGTGAACCATGTTACCTaGAAGGCCACAGCAGGATTACTACATCTACTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: LIFNMQSVNHVT*KATAGLLHLLH Trigger: ATGAAGTAGATGTAGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAGATTAA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CCA 90 bp | GGAGGCCAGAGAGGTCAACAGGAACTTTACCATCAAGTGCCGTGTGCACCACAATTGGGTGGGCGAGTATaGCGTACTAGTCAAGGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GGQRGQQELYHQVPCAPQLGGRV*RTSQGS Trigger: GGAGCCTTGACTAGTACGCCATACTCGCCCACCCAA...TTGTGGTGCACACGGCACTTGATGGTAAAGTTCCTGTTGACCTCTCTGGCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | GGAAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTGCCTTCCAGGATTTGTCATCTTaGGCTCATCAAACCGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: GSTLIAHSPPMSRAPRAFQDLSS*AHQTGV Trigger: CACTCCGGTTTGATGAGCTCAAGATGACAAATCCTG...GAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | GCTAGGACCCACTCTCATCCAGGACGATGCCATACATACATAGGTCCTTACATTTGTTTAGCGAGAGCCTaGTCTCGCTCTAGATGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ARTHSHPGRCHTYIGPYICLARA*SRSRCW Trigger: CCAACATCTAGAGCGAGAGCAGGCTCTCGCTAAACA...AATGTAAGGACCTATGTATGTATGGCATCGTCCTGGATGAGAGTGGGTCCTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | GCTTCTGTGGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCCTCCCGGTGTCTCCAGCATaGCTCTGCATACACTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: ASVVQEISRYDVTFASILPVSPA*LCIHLP Trigger: TGGCAAGTGTATGCAGAGTCATGCTGGAGACACCGG...GAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | GGAAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTGCCTTCAGCATGGACCTAATTTaGTTGGAGGTAGTCTCATCA | + |
|
Preference number: 4 (lower is better) Translates to: GSTLIAHSPPMSRAPRAFSMDLI*LEVVSS Trigger: TGATGAGACTACCTCCAAGCAAATTAGGTCCATGCT...GAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | ATCAGTTACGAAGCAACACCACACGGAACAATCTGTAAACAGCAAGTAGTTAAGGGCTGGATGCTGGATTaGCTCTCGTATTTCGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: ISYEATPHGTICKQQVVKGWMLD*LSYFVA Trigger: GGCCACGAAATACGAGAGGCAATCCAGCATCCAGCC...CTTAACTACTTGCTGTTTACAGATTGTTCCGTGTGGTGTTGCTTCGTAACTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | CTTCAACATGCAGAGTGTGAACCATGTTACCTGAAAGGCCACAGCAGGATTACTAACCGGAGTGTGAAGTaGAGAATCTCTGCAAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: LQHAECEPCYLKGHSRITNRSVK*RISANC Trigger: ACAGTTTGCAGAGATTCTTCACTTCACACTCCGGTT...AGTAATCCTGCTGTGGCCTTTCAGGTAACATGGTTCACACTCTGCATGTTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | GGAAGTACTCTTATTGCTCACTCTCCTCCAATGTCAAGGGCTCCTCGTGCCTTCATACACTTGCCATGGTaGTTAAACAATCTGTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: GSTLIAHSPPMSRAPRAFIHLPW*LNNLWY Trigger: ATACCACAGATTGTTTAAGCACCATGGCAAGTGTAT...GAAGGCACGAGGAGCCCTTGACATTGGAGGAGAGTGAGCAATAAGAGTACTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTTCTCGCTCTAGATGTTaGGTGGGCGAGTATGGCGTA | + |
|
Preference number: 4 (lower is better) Translates to: FISPHSLHSITHLAALHISRSRC*VGEYGV Trigger: TACGCCATACTCGCCCACCCAACATCTAGAGCGAGA...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | ACTTGGCAGCTCTCCATATTTAGGTACTATGCAAGATCCTTGCTTGAGACACTGGAAGTGAAGAATCTCTaGAAACTGTTTAGCGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TWQLSIFRYYARSLLETLEVKNL*KLFSES Trigger: GCTCTCGCTAAACAGTTTGCAGAGATTCTTCACTTC...CAGTGTCTCAAGCAAGGATCTTGCATAGTACCTAAATATGGAGAGCTGCCAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | GCTTCTGTGGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCCTCTACCCTCAAGCAGAATaGTACTGTCTCTTCATTGGT | + |
|
Preference number: 4 (lower is better) Translates to: ASVVQEISRYDVTFASILYPQAE*YCLFIG Trigger: ACCAATGAAGAGACAGTATCATTCTGCTTGAGGGTA...GAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | TACATCTACTTCATTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCGGTCATAGAGTATTATaGCACCCACCATTACCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: YIYFIYQSSLTPFNYSLGGHRVL*HPPLPS Trigger: TGAGGGTAATGGTGGGTGTCATAATACTCTATGACC...GCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAATGAAGTAGATGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CCA 90 bp | ATCAGTTACGAAGCAACACCACACGGAACAATCTGTAAACAGCAAGTAGTTAAGTCAGACTCTGTAGGCTaGGCATTTTCAAAATCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: ISYEATPHGTICKQQVVKSDSVG*AFSKSR Trigger: CCTTGATTTTGAAAATGCCCAGCCTACAGAGTCTGA...CTTAACTACTTGCTGTTTACAGATTGTTCCGTGTGGTGTTGCTTCGTAACTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTTGCATACACTTGCCATaGTGCTTAAACAATCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FISPHSLHSITHLAALHICIHLP*CLNNLW Trigger: CCACAGATTGTTTAAGCACCATGGCAAGTGTATGCA...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | TTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCAGCTCTCCATATTTTCTTCTGTAGTAGCTaGAGTCATTTTGTATGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: FISPHSLHSITHLAALHIFFCSS*SHFVWQ Trigger: CTGCCATACAAAATGACTTCAGCTACTACAGAAGAA...AATATGGAGAGCTGCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR TCA 90 bp | ATCAGTTACGAAGCAACACCACACGGAACAATCTGTAAACAGCAAGTAGTTAAGCTCAGCGTAAAACAATaGCATTCGATTTGCCAATTC | + |
|
Preference number: 4 (lower is better) Translates to: ISYEATPHGTICKQQVVKLSVKQ*HSICQF Trigger: GAATTGGCAAATCGAATGTCATTGTTTTACGCTGAG...CTTAACTACTTGCTGTTTACAGATTGTTCCGTGTGGTGTTGCTTCGTAACTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR GCA 90 bp | GCTTCTGTGGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCCTCAAAACTTCTTTAATTTaGCTACTAGTGGCACGACTG | + |
|
Preference number: 4 (lower is better) Translates to: ASVVQEISRYDVTFASILKTSLI*LLVARL Trigger: CAGTCGTGCCACTAGTAGGCAAATTAAAGAAGTTTT...GAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CAA 72 bp | GGCTGTTTTGTGAGACAGTTGTATTCAATGCTTAAGTaGACTGTAACAAATTACCACAAACTAGGTGGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: GCFVRQLYSMLK*TVTNYHKLGGL Trigger: TAAGCCACCTAGTTTGTGGTAATTTGTTACAGTCAACTTAAGCATTGAATACAACTGTCTCACAAAACAGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| 3UTR CAA 72 bp | AAGTGTAGTGATGTATCAGGCTGTTTTGTGAGACAGTaGTATTCAATGCTTAAGTTGACTGTAACAAATTAC | + |
|
Preference number: 4 (lower is better) Translates to: KCSDVSGCFVRQ*YSMLKLTVTNY Trigger: GTAATTTGTTACAGTCAACTTAAGCATTGAATACAACTGTCTCACAAAACAGCCTGATACATCACTACACTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | GCAGGAGGCCAGAGAGGTCAACAGGAACTTTACCATCAAGTGCCGTGTGCACCAGCAGGATTTGTCATCTaGAGCTCATCAAACCGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: AGGQRGQQELYHQVPCAPAGFVI*SSSNRS Trigger: ACTCCGGTTTGATGAGCTCAAGATGACAAATCCTGC...TGGTGCACACGGCACTTGATGGTAAAGTTCCTGTTGACCTCTCTGGCCTCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | GCAGGAGGCCAGAGAGGTCAACAGGAACTTTACCATCAAGTGCCGTGTGCACCAGTGTACCTGAGAGCATaGAGAAGACCTTCTACACTA | + |
|
Preference number: 5 (lower is better) Translates to: AGGQRGQQELYHQVPCAPVYLRA*RRPSTL Trigger: TAGTGTAGAAGGTCTTCTCAATGCTCTCAGGTACAC...TGGTGCACACGGCACTTGATGGTAAAGTTCCTGTTGACCTCTCTGGCCTCCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | GACACTGAAGGAATAAGACATGGCTCTTCTCAGGTTCTCAGTCTCTGCAGCATCCAGCATGGACCTAATTaGCTTGGAGGTAGTCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: DTEGIRHGSSQVLSLCSIQHGPN*LGGSLI Trigger: GATGAGACTACCTCCAAGCAAATTAGGTCCATGCTG...GATGCTGCAGAGACTGAGAACCTGAGAAGAGCCATGTCTTATTCCTTCAGTGTC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | ACTTGGCAGCTCTCCATATTTAGGTACTATGCAAGATCCTTGCTTGAGACACTGTTAAGGTTTTCAGCATaGGGGTGGCCTCAGCGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: TWQLSIFRYYARSLLETLLRFSA*GWPQRK Trigger: TTTACGCTGAGGCCACCCCAATGCTGAAAACCTTAA...CAGTGTCTCAAGCAAGGATCTTGCATAGTACCTAAATATGGAGAGCTGCCAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | GCTTCTGTGGTCCAGGAAATTTCAAGATATGATGTTACCTTTGCCTCTATCCTCATGGACCTAATTTGCTaGGAGGTAGTCTCATCATTC | + |
|
Preference number: 5 (lower is better) Translates to: ASVVQEISRYDVTFASILMDLIC*EVVSSF Trigger: GAATGATGAGACTACCTCCAAGCAAATTAGGTCCAT...GAGGATAGAGGCAAAGGTAACATCATATCTTGAAATTTCCTGGACCACAGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | TACATCTACTTCATTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCTCTCCGATACAAATTTaGTTGTTGCATCACTTAAGG | + |
|
Preference number: 5 (lower is better) Translates to: YIYFIYQSSLTPFNYSLGSPIQI*LLHHLR Trigger: CCTTAAGTGATGCAACAACAAAATTTGTATCGGAGA...GCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAATGAAGTAGATGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS-3UTR CAA 90 bp | TACATCTACTTCATTTATCAGTCCTCACTCACTCCATTCAATTACTCACTTGGCGATACTGTCTCTTCATaGGTAAATCTGCTTCTGTAT | + |
|
Preference number: 5 (lower is better) Translates to: YIYFIYQSSLTPFNYSLGDTVSS*VNLLLY Trigger: ATACAGAAGCAGATTTACCAATGAAGAGACAGTATC...GCCAAGTGAGTAATTGAATGGAGTGAGTGAGGACTGATAAATGAAGTAGATGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063838.11 |
||
| CDS CAA 90 bp | ATGACACCCACCATTACCCTCAAGCAGAATGATACTGTCTCTTCATaGGTAAATCTGCTTCTGTATTCCGGTGTCTCCAGCATGACTCTG | + |
|
Preference number: 6 (lower is better) Translates to: MTPTITLKQNDTVSS*VNLLLYSGVSSMTL Trigger: CAGAGTCATGCTGGAGACACCGGAATACAGAAGCAGATTTACCAATGAAGAGACAGTATCATTCTGCTTGAGGGTAATGGTGGGTGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000063838.11 ENSMUST00000164532.3 ENSMUST00000228226.2 |
||
| CDS TCA 72 bp | TTTGTCATCTTGAGCTCATCAAACCGGAGTGTGAAGTaGAGAATCTCTGCAAACTGTTTAGCGAGAGCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: FVILSSSNRSVK*RISANCLARAC Trigger: GCAGGCTCTCGCTAAACAGTTTGCAGAGATTCTTCACTTCACACTCCGGTTTGATGAGCTCAAGATGACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063838.11 ENSMUST00000164532.3 ENSMUST00000228226.2 ENSMUST00000228908.2 |
||
| CDS TCA 72 bp | GAGTATTATGACACCCACCATTACCCTCAAGCAGAATaGTACTGTCTCTTCATTGGTAAATCTGCTTCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: EYYDTHHYPQAE*YCLFIGKSASV Trigger: TACAGAAGCAGATTTACCAATGAAGAGACAGTATCATTCTGCTTGAGGGTAATGGTGGGTGTCATAATACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000063838.11 ENSMUST00000164532.3 ENSMUST00000228226.2 |
||