Pregenerated sensors for CYPT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048573Ensembl transcript IDs: ENSMUST00000056754.4, ENSMUST00000112573.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTTCACATCTTATTATTTTCACCATCATACAAATTAGTTTGTGGTaGAAAGTGGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGT | + |
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Preference number: 1 (lower is better) Translates to: FSHLIIFTIIQISLW*KVALTGPQLSSQTR Trigger: ACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCACTTTTCACCACAAACTAATTTGTATGATGGTGAAAATAATAAGATGTGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056754.4 |
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| 3UTR TCA 72 bp | CCATCATACAAATTAGTTTGTGGTGAAAAGTGGCCTTaGCAGGACCACAGCTCAGCTCCCAGACCCGTTCAC | + |
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Preference number: 3 (lower is better) Translates to: PSYKLVCGEKWP*QDHSSAPRPVH Trigger: GTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCACTTTTCACCACAAACTAATTTGTATGATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR GCA 90 bp | GTGGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGCGGCTGCTGCTGCTaGCGCAGCTCTAGACCCGTG | + |
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Preference number: 4 (lower is better) Translates to: VALTGPQLSSQTRSLMFHGGCCC*RSSRPV Trigger: CACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCC...ATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR GCA 90 bp | AAAGTGGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTGGCGGCTGCTGCTGCTaGCGCAGCTCTAGACCCGTG | + |
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Preference number: 4 (lower is better) Translates to: KVALTGPQLSSQTRSLMFGGCCC*RSSRPV Trigger: CACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCC...AAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCACTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR TCA 90 bp | GGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGAATTCTCCTTCTAAGTaGTTGTTCCCCCTTCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: GLDRTTAQLPDPFTDVSWNSPSK*LFPLLR Trigger: ACGAAGAAGGGGGAACAATCACTTAGAAGGAGAATT...CCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CCA 90 bp | CAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACCTGTTCAGGGTTCTCCATTCGGAACCTaGTCACTGTCAATGCATGGT | + |
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Preference number: 4 (lower is better) Translates to: QLPDPFTDVSWVFGPVQGSPFGT*SLSMHG Trigger: ACCATGCATTGACAGTGACCAGGTTCCGAATGGAGA...ACCCTGAACAGGTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CCA 90 bp | CAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACCTGTTCTCTCCATTCGGAACCTaGTCACTGTCAATGCATGGT | + |
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Preference number: 4 (lower is better) Translates to: QLSSQTRSLMFHGSLDLFSPFGT*SLSMHG Trigger: ACCATGCATTGACAGTGACCAGGTTCCGAATGGAGA...GAACAGGTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR TCA 90 bp | GTGGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATCGAATTAAGGAACGATaGGATCTCTTGGGAAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: VALTGPQLSSQTRSLMFHRIKER*DLLGSL Trigger: TAAGCTTCCCAAGAGATCTCATCGTTCCTTAATTCG...ATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR TCA 90 bp | GGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACAATTCTCCTTCTAAGTaGTTGTTCCCCCTTCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: GPQLSSQTRSLMFHGSLDNSPSK*LFPLLR Trigger: ACGAAGAAGGGGGAACAATCACTTAGAAGGAGAATT...GTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR TCA 90 bp | AAAAGTGGCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTCCACAGGAACGAGACTaGAAAAGAGAACGAATTAAG | + |
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Preference number: 4 (lower is better) Translates to: KSGLDRTTAQLPDPFTDVPQERD*KRERIK Trigger: CTTAATTCGTTCTCTTTTTCAGTCTCGTTCCTGTGG...AACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGCCACTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACCTGTTCCTCATGAGAGAACAATaGCACTGTAATCTCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: QLSSQTRSLMFHGSLDLFLMREQ*HCNLTW Trigger: CCAAGTGAGATTACAGTGGCATTGTTCTCTCATGAG...GAACAGGTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR GCA 90 bp | ACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACCTGTTCTCATGAGAGAACAATaGCACTGTAATCTCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: TAQLPDPFTDVSWVFGPVLMREQ*HCNLTW Trigger: CCAAGTGAGATTACAGTGGCATTGTTCTCTCATGAG...AACAGGTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CAA 90 bp | GCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTTCGATCTTTTGGCTTaGGCAGCGGCGGCTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: ALTGPQLSSQTRSLMFHGFDLLA*AAAAAA Trigger: AGCAGCAGCCGCCGCTGCCAAAGCCAAAAGATCGAA...CCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CAA 90 bp | ACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGTTCGATCTTTTGGCTTaGGCAGCGGCGGCTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TGPQLSSQTRSLMFHGSLFDLLA*AAAAAA Trigger: AGCAGCAGCCGCCGCTGCCAAAGCCAAAAGATCGAA...CAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CAA 90 bp | GCCTTGACAGGACCACAGCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGCGCTTCTTATTAAGCTaGAATCTTTTGGCGGCGGTC | + |
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Preference number: 5 (lower is better) Translates to: ALTGPQLSSQTRSLMFHGRFLLS*NLLAAV Trigger: GACCGCCGCCAAAAGATTCAAGCTTAATAAGAAGCG...CCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGCTGTGGTCCTGTCAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS-3UTR CAA 90 bp | GCTCAGCTCCCAGACCCGTTCACTGATGTTTCATGGGTCTTTGGACCTGTTCAGCGCTTCTTATTAAGCTaGAATCTTTTGGCGGCGGTC | + |
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Preference number: 5 (lower is better) Translates to: AQLPDPFTDVSWVFGPVQRFLLS*NLLAAV Trigger: GACCGCCGCCAAAAGATTCAAGCTTAATAAGAAGCG...CTGAACAGGTCCAAAGACCCATGAAACATCAGTGAACGGGTCTGGGAGCTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CCA 90 bp | CACATTGGCATTCTCATGAGAGAACAATGCCACTGTAATCTCACTTaGCTCCAAAGCCATAGTCGGTTCCGGTTCGATCAGCTCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: HIGILMREQCHCNLT*LQSHSRFRFDQLQL Trigger: CAACTGGAGCTGATCGAACCGGAACCGACTATGGCTTTGGAGCCAAGTGAGATTACAGTGGCATTGTTCTCTCATGAGAATGCCAATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS TCA 90 bp | AAGTTCAGTAGCACTCTTGATTCGTCTCCTAATTCTCCTTCTAAGTaGTTGTTCCCCCTTCTTCGTAATCTTAAATGTAATTCTGCTACG | + |
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Preference number: 5 (lower is better) Translates to: KFSSTLDSSPNSPSK*LFPLLRNLKCNSAT Trigger: CGTAGCAGAATTACATTTAAGATTACGAAGAAGGGGGAACAATCACTTAGAAGGAGAATTAGGAGACGAATCAAGAGTGCTACTGAACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056754.4 |
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| CDS GCA 72 bp | CGATCTTTTGGCTTTGGCAGCGGCGGCTGCTGCTGCTaGCGCAGCTCTAGACCCGTGGACTTTCTTGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: RSFGFGSGGCCC*RSSRPVDFLGH Trigger: GTGGCCAAGAAAGTCCACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCCGCTGCCAAAGCCAAAAGATCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS GCA 72 bp | CTTCGATCTTTTGGCTTTGGCAGCGGCGGCTGCTGCTaGTGCCGCAGCTCTAGACCCGTGGACTTTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: LRSFGFGSGGCC*CRSSRPVDFLG Trigger: GCCAAGAAAGTCCACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCCGCTGCCAAAGCCAAAAGATCGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS GCA 72 bp | AGGCTTCGATCTTTTGGCTTTGGCAGCGGCGGCTGCTaGTGCTGCCGCAGCTCTAGACCCGTGGACTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RLRSFGFGSGGC*CCRSSRPVDFL Trigger: AAGAAAGTCCACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCCGCTGCCAAAGCCAAAAGATCGAAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CCA 72 bp | GTCTCCATTCGGAACCTGGTCACTGTCAATGCATGGTaGAACTTCCTCCGGCTCAGACACATTGGCATTCTC | + |
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Preference number: 6 (lower is better) Translates to: VSIRNLVTVNAW*NFLRLRHIGIL Trigger: GAGAATGCCAATGTGTCTGAGCCGGAGGAAGTTCCACCATGCATTGACAGTGACCAGGTTCCGAATGGAGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CCA 72 bp | ATTCTCATGAGAGAACAATGCCACTGTAATCTCACTTaGCTCCAAAGCCATAGTCGGTTCCGGTTCGATCAG | + |
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Preference number: 6 (lower is better) Translates to: ILMREQCHCNLT*LQSHSRFRFDQ Trigger: CTGATCGAACCGGAACCGACTATGGCTTTGGAGCCAAGTGAGATTACAGTGGCATTGTTCTCTCATGAGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CAA 72 bp | GATCTAGGGTTTCGCTTCTTATTAAGCTTGAATCTTTaGGCGGCGGTCTTAGGCTTCGATCTTTTGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: DLGFRFLLSLNL*AAVLGFDLLAL Trigger: CAAAGCCAAAAGATCGAAGCCTAAGACCGCCGCCAAAAGATTCAAGCTTAATAAGAAGCGAAACCCTAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CAA 72 bp | GGAAGCTTAGATCTAGGGTTTCGCTTCTTATTAAGCTaGAATCTTTTGGCGGCGGTCTTAGGCTTCGATCTT | + |
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Preference number: 6 (lower is better) Translates to: GSLDLGFRFLLS*NLLAAVLGFDL Trigger: AAGATCGAAGCCTAAGACCGCCGCCAAAAGATTCAAGCTTAATAAGAAGCGAAACCCTAGATCTAAGCTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS CAA 72 bp | AGTTGGCTCCGCATCAATCGAAGTTCAGTAGCACTCTaGATTCGTCTCCTAATTCTCCTTCTAAGTGATTGT | + |
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Preference number: 6 (lower is better) Translates to: SWLRINRSSVAL*IRLLILLLSDC Trigger: ACAATCACTTAGAAGGAGAATTAGGAGACGAATCAAGAGTGCTACTGAACTTCGATTGATGCGGAGCCAACT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056754.4 ENSMUST00000112573.8 |
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| CDS TCA 72 bp | AGCACTCTTGATTCGTCTCCTAATTCTCCTTCTAAGTaGTTGTTCCCCCTTCTTCGTAATCTTAAATGTAAT | + |
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Preference number: 6 (lower is better) Translates to: STLDSSPNSPSK*LFPLLRNLKCN Trigger: ATTACATTTAAGATTACGAAGAAGGGGGAACAATCACTTAGAAGGAGAATTAGGAGACGAATCAAGAGTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056754.4 |
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