Pregenerated sensors for CYPT15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079619

Ensembl transcript IDs: ENSMUST00000115114.3

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CAA 90 bp	CCTATCTATGACTATCATGCTGTAAAATTTGCCCATAACATCGTGACGATGGCTGGAACTAGGGCTTTTTaGAGGTGTGATAGAACTTCT	+
Preference number: 3 (lower is better) Translates to: PIYDYHAVKFAHNIVTMAGTRAF*RCDRTS Trigger: AGAAGTTCTATCACACCTCAAAAAAGCCCTAGTTCC...AGCCATCGTCACGATGTTATGGGCAAATTTTACAGCATGATAGTCATAGATAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115114.3
3UTR CAA 72 bp	GAGCTAGCCACGTATTCATTAGGAACTAGGGCTTTTTaGAGGTGTGATAGAACTTCTTCTTTTGTGATGTCA	+
Preference number: 4 (lower is better) Translates to: ELATYSLGTRAF*RCDRTSSFVMS Trigger: TGACATCACAAAAGAAGAAGTTCTATCACACCTCAAAAAAGCCCTAGTTCCTAATGAATACGTGGCTAGCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115114.3
CDS-3UTR CAA 90 bp	CCTATCTATGACTATCATGCTGTAAAATTTGCCCATAACATCGTGACGATGGCTTGGTTCCCTTCACTTTaGATGCCAGTCGAAAAACTC	+
Preference number: 5 (lower is better) Translates to: PIYDYHAVKFAHNIVTMAWFPSL*MPVEKL Trigger: GAGTTTTTCGACTGGCATCAAAAGTGAAGGGAACCA...AGCCATCGTCACGATGTTATGGGCAAATTTTACAGCATGATAGTCATAGATAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115114.3
CDS GCA 72 bp	GGATACTTTACATTTCTTCAGCTGGGATGTTGCCCGTaGATAGGCAGTAGGCTTAGGTGTTCTCTTGACCAC	+
Preference number: 6 (lower is better) Translates to: GYFTFLQLGCCP*IGSRLRCSLDH Trigger: GTGGTCAAGAGAACACCTAAGCCTACTGCCTATGCACGGGCAACATCCCAGCTGAAGAAATGTAAAGTATCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115114.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu