RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CYPT14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095240

Ensembl transcript IDs: ENSMUST00000179096.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCAAGCCTTACATTTCTTTaGCTTGGATGTTGCTCGTGC +
Preference number: 4 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSSLTFL*LGCCSC
Trigger: GCACGAGCAACATCCAAGCCAAAGAAATGTAAGGCT...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS-3UTR TCA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCAGGTTCCCTTCACTTTTaGTGCCAGTTGAAAAACTCT +
Preference number: 4 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSGSLHF*CQLKNS
Trigger: AGAGTTTTTCAACTGGCATCAAAAGTGAAGGGAACC...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
3UTR CAA 72 bp GAGCTAGCCAGGTATTCATTAGGAACTAGAGCTTTTTaGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGT +
Preference number: 4 (lower is better)
Translates to: ELARYSLGTRAF*RCDRTSFVRSS
Trigger: ACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAAAGCTCTAGTTCCTAATGAATACCTGGCTAGCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS-3UTR TCA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCAACTTTTGATGCCAGTTaGAAAACTCTCTTTCCCTTT +
Preference number: 4 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSTFDAS*KTLFPF
Trigger: AAAGGGAAAGAGAGTTTTTCAACTGGCATCAAAAGT...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS-3UTR CCA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCACAGCATAAAGCATGTTaGTTCTTGATGGAATACTTG +
Preference number: 4 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSQHKAC*FLMEYL
Trigger: CAAGTATTCCATCAAGAACCAACATGCTTTATGCTG...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS CCA 90 bp GATGGAATACTTGCACTTAAGACGACAGGAAGCCTTACATTTCTTTaGCTTGGATGTTGCTCGTGCATAGGCAGTAGGCTTAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: DGILALKTTGSLTFL*LGCCSCIGSRLRCS
Trigger: AGAACACCTAAGCCTACTGCCTATGCACGAGCAACATCCAAGCCAAAGAAATGTAAGGCTTCCTGTCGTCTTAAGTGCAAGTATTCCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS-3UTR CAA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCAATCTCACCACAACTTTaGCAGCATAAAGCATGTTGG +
Preference number: 5 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSISPQL*QHKACW
Trigger: CCAACATGCTTTATGCTGCAAAAGTTGTGGTGAGAT...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS-3UTR CAA 90 bp TTTTTGAGGTGTGATAGAACTTCTTTTGTGAGGTCAAGTTGGCCGTCTCATTCATGGTTCCCTTCACTTTaGATGCCAGTTGAAAAACTC +
Preference number: 5 (lower is better)
Translates to: FLRCDRTSFVRSSWPSHSWFPSL*MPVEKL
Trigger: GAGTTTTTCAACTGGCATCAAAAGTGAAGGGAACCA...TGAATGAGACGGCCAACTTGACCTCACAAAAGAAGTTCTATCACACCTCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS CCA 72 bp CTTGCACTTAAGACGACAGGAAGCCTTACATTTCTTTaGCTTGGATGTTGCTCGTGCATAGGCAGTAGGCTT +
Preference number: 6 (lower is better)
Translates to: LALKTTGSLTFL*LGCCSCIGSRL
Trigger: AAGCCTACTGCCTATGCACGAGCAACATCCAAGCCAAAGAAATGTAAGGCTTCCTGTCGTCTTAAGTGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS CCA 72 bp GTTATCTCACCACAACTTTTGCAGCATAAAGCATGTTaGTTCTTGATGGAATACTTGCACTTAAGACGACAG +
Preference number: 6 (lower is better)
Translates to: VISPQLLQHKAC*FLMEYLHLRRQ
Trigger: CTGTCGTCTTAAGTGCAAGTATTCCATCAAGAACCAACATGCTTTATGCTGCAAAAGTTGTGGTGAGATAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2
CDS CAA 72 bp ACTCTCTTTCCCTTTCCTGTTATCTCACCACAACTTTaGCAGCATAAAGCATGTTGGTTCTTGATGGAATAC +
Preference number: 6 (lower is better)
Translates to: TLFPFPVISPQL*QHKACWFLMEY
Trigger: GTATTCCATCAAGAACCAACATGCTTTATGCTGCAAAAGTTGTGGTGAGATAACAGGAAAGGGAAAGAGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179096.2