Pregenerated sensors for CYP4A32 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063929

Ensembl transcript IDs: ENSMUST00000084342.6

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TATTTTCCAGCTCTCCCTCATCCTGCAGCTGATCCTTTCTCATCTTaGTCACTCCATCTGTGTGATCATGGGCAAGTTGACAAGCTTGTT	+
Preference number: 5 (lower is better) Translates to: YFPALPHPAADPFSS*SLHLCDHGQVDKLV Trigger: AACAAGCTTGTCAACTTGCCCATGATCACACAGATGGAGTGATCAAGATGAGAAAGGATCAGCTGCAGGATGAGGGAGAGCTGGAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS CCA 90 bp	AGATATTTCTCACACGGGAGTGAAATAGGTTATTCAAGTCCCCAATaGCCTGGAGGTAGGTCTTGTAATTTCCATCCACCTGAACACTGC	+
Preference number: 5 (lower is better) Translates to: RYFSHGSEIGYSSPQ*PGGRSCNFHPPEHC Trigger: GCAGTGTTCAGGTGGATGGAAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTATTTCACTCCCGTGTGAGAAATATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS CCA 90 bp	AGTCCTGACCAGCCAGCCTTTCCCATTTGTCTAGCATCAATCGAATaGAGTCAGCCATGTTTTTCACATAGGGTTTCAGAATGTCATAGT	+
Preference number: 5 (lower is better) Translates to: SPDQPAFPICLASIE*SQPCFSHRVSECHS Trigger: ACTATGACATTCTGAAACCCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTAGACAAATGGGAAAGGCTGGCTGGTCAGGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS CCA 90 bp	GACAAGCTTGTTTGGCCAAGCGGCCATTGGAAGAAAGTCTGTAGATaGTATCATTCTGATGAAAGATATTTCTCACACGGGAGTGAAATA	+
Preference number: 5 (lower is better) Translates to: DKLVWPSGHWKKVCR*YHSDERYFSHGSEI Trigger: TATTTCACTCCCGTGTGAGAAATATCTTTCATCAGAATGATACCATCTACAGACTTTCTTCCAATGGCCGCTTGGCCAAACAAGCTTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS CCA 72 bp	TCACACGGGAGTGAAATAGGTTATTCAAGTCCCCAATaGCCTGGAGGTAGGTCTTGTAATTTCCATCCACCT	+
Preference number: 6 (lower is better) Translates to: SHGSEIGYSSPQ*PGGRSCNFHPP Trigger: AGGTGGATGGAAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTATTTCACTCCCGTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS GCA 72 bp	CTCCCCCAGAACCAGCAAGGAAAAGCACTTGGGAAGTaGTCTATACATGACACAACTTCCTTTAGTTCTTGT	+
Preference number: 6 (lower is better) Translates to: LPQNQQGKALGK*SIHDTTSFSSC Trigger: ACAAGAACTAAAGGAAGTTGTGTCATGTATAGAGCACTTCCCAAGTGCTTTTCCTTGCTGGTTCTGGGGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000084342.6
CDS CCA 72 bp	GTTTGGCCAAGCGGCCATTGGAAGAAAGTCTGTAGATaGTATCATTCTGATGAAAGATATTTCTCACACGGG	+
Preference number: 6 (lower is better) Translates to: VWPSGHWKKVCR*YHSDERYFSHG Trigger: CCCGTGTGAGAAATATCTTTCATCAGAATGATACCATCTACAGACTTTCTTCCAATGGCCGCTTGGCCAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000084342.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu