Pregenerated sensors for CYP3A16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038656

Ensembl transcript IDs: ENSMUST00000031633.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGGGCAGATATACATAAGGATCAATGCTGCCCTTGTTCTCCTTGCTaGACCTTTCAGGTTGGAATTCTTCAGGCTCTGGCCAGTGCTGTG	+
Preference number: 5 (lower is better) Translates to: RADIHKDQCCPCSPC*TFQVGILQALASAV Trigger: CACAGCACTGGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTCAGCAAGGAGAACAAGGGCAGCATTGATCCTTATGTATATCTGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS TCA 90 bp	TGTGATCTCGATTTCAGAAAGGGCTTTATGAGAGTCTTTGTCTTTTaGCTTATTATAAGCTTCCATCATCAGATAAATAAAGTCCACGCG	+
Preference number: 5 (lower is better) Translates to: CDLDFRKGFMRVFVF*LIISFHHQINKVHA Trigger: CGCGTGGACTTTATTTATCTGATGATGGAAGCTTATAATAAGTCAAAAGACAAAGACTCTCATAAAGCCCTTTCTGAAATCGAGATCACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS TCA 72 bp	GTGTACAGGTCCCATATCGGTAGAGGAGCACCAGGATaGTTGCCAGGAGGACCAATGTATCCAGTGAGAGCG	+
Preference number: 6 (lower is better) Translates to: VYRSHIGRGAPG*LPGGPMYPVRA Trigger: CGCTCTCACTGGATACATTGGTCCTCCTGGCAATCATCCTGGTGCTCCTCTACCGATATGGGACCTGTACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS CAA 72 bp	AATGCTGCCCTTGTTCTCCTTGCTGAACCTTTCAGGTaGGAATTCTTCAGGCTCTGGCCAGTGCTGTGGGTC	+
Preference number: 6 (lower is better) Translates to: NAALVLLAEPFR*EFFRLWPVLWV Trigger: GACCCACAGCACTGGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTCAGCAAGGAGAACAAGGGCAGCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS TCA 72 bp	ATACATAAGGATCAATGCTGCCCTTGTTCTCCTTGCTaGACCTTTCAGGTTGGAATTCTTCAGGCTCTGGCC	+
Preference number: 6 (lower is better) Translates to: IHKDQCCPCSPC*TFQVGILQALA Trigger: GGCCAGAGCCTGAAGAATTCCAACCTGAAAGGTTCAGCAAGGAGAACAAGGGCAGCATTGATCCTTATGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS TCA 72 bp	ATCGTCTCTGGGTCCGTGATGACAAAGAGAGGTATTTaGCCATCAAACAACCCCCACGTTTTTCCATACTTT	+
Preference number: 6 (lower is better) Translates to: IVSGSVMTKRGI*PSNNPHVFPYF Trigger: AAAGTATGGAAAAACGTGGGGGTTGTTTGATGGTCAAATACCTCTCTTTGTCATCACGGACCCAGAGACGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS GCA 72 bp	CAAATTTCCATAAACCCTTGTAATAATTCAGGACAGTaGCTAAAAATGGCAGAGGTTTGGGCCCAGGAATTC	+
Preference number: 6 (lower is better) Translates to: QISINPCNNSGQ*LKMAEVWAQEF Trigger: GAATTCCTGGGCCCAAACCTCTGCCATTTTTAGGCACTGTCCTGAATTATTACAAGGGTTTATGGAAATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031633.5
CDS TCA 72 bp	TTATCACTGTTGACCCTTTCGGGATATAAATACCATTaGTTTCAACATCCTTTTTACAGACTCTCTGAAGTC	+
Preference number: 6 (lower is better) Translates to: LSLLTLSGYKYH*FQHPFYRLSEV Trigger: GACTTCAGAGAGTCTGTAAAAAGGATGTTGAAATCAATGGTATTTATATCCCGAAAGGGTCAACAGTGATAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031633.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu